RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6172
(130 letters)
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain. The CH domain is
found in both cytoskeletal proteins and signal
transduction proteins. The CH domain is involved in
actin binding in some members of the family. However in
calponins there is evidence that the CH domain is not
involved in its actin binding activity. Most member
proteins have from two to four copies of the CH domain,
however some proteins such as calponin have only a
single copy.
Length = 104
Score = 51.9 bits (125), Expect = 1e-09
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 13/115 (11%)
Query: 6 WRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQK 65
+ W+ +++ LRDG+ +C LLN L P ID+++VN+
Sbjct: 1 EKALLRWINEVLGEYGGLP-------VTNFFEDLRDGLALCALLNKLRPGLIDLKKVNKN 53
Query: 66 PQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSLC 120
F L N+ + ++ + + + EP L + G+ VL L++L
Sbjct: 54 R----FDKLENLNLALEFAEKKLGVPK--VLEPEDLVEDGNEKLVLTLLAQLFRR 102
>gnl|CDD|214479 smart00033, CH, Calponin homology domain. Actin binding domains
present in duplicate at the N-termini of spectrin-like
proteins (including dystrophin, alpha-actinin). These
domains cross-link actin filaments into bundles and
networks. A calponin homology domain is predicted in
yeasst Cdc24p.
Length = 101
Score = 50.4 bits (121), Expect = 3e-09
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 31 SMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDI 90
+++ + L+DGV +C LLN+L P +D ++V L++F + NI + +
Sbjct: 18 PVTNFSSDLKDGVALCALLNSLSPGLVDKKKVA--ASLSRFKKIENINLALSFAEKLGGK 75
Query: 91 AEN----DLFEPS 99
DL E
Sbjct: 76 VVLFEPEDLVEGP 88
>gnl|CDD|221350 pfam11971, CAMSAP_CH, CAMSAP CH domain. This domain is the
N-terminal CH domain from the CAMSAP proteins.
Length = 85
Score = 48.8 bits (117), Expect = 8e-09
Identities = 10/66 (15%), Positives = 26/66 (39%)
Query: 23 HKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQ 82
+ + +L DG + L++ P + + ++ K ++ L NI++ +
Sbjct: 4 ARCTPLSPPVENLTRDFSDGCALAALIHFYCPQLVPLHDICLKETMSVADSLYNIQLLQE 63
Query: 83 ICRNYF 88
C +
Sbjct: 64 FCEEHL 69
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which
may be present as a single copy or in tandem repeats
(which increases binding affinity). The CH domain is
found in cytoskeletal and signal transduction proteins,
including actin-binding proteins like spectrin,
alpha-actinin, dystrophin, utrophin, and fimbrin,
proteins essential for regulation of cell shape
(cortexillins), and signaling proteins (Vav).
Length = 107
Score = 47.3 bits (113), Expect = 4e-08
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 4 DLWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVN 63
E W+ + ++++ + L+DG+ +C LLN+L P ID +++N
Sbjct: 1 SQKEELLRWI-------NKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKIN 53
Query: 64 QKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSL 119
L++F L NI + + + F+ L + GD VL L L
Sbjct: 54 ---PLSRFKRLENINLALNFAEKL-GV-PVVNFDAEDLVEDGDEKLVLGLLWSLIR 104
>gnl|CDD|227526 COG5199, SCP1, Calponin [Cytoskeleton].
Length = 178
Score = 44.9 bits (106), Expect = 1e-06
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 34 DLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAEN 93
DL L+DGV +C +LN P I +E F+ + NI FI + + E
Sbjct: 35 DLLSLLKDGVRLCRILNEASPLDIKYKESKMP-----FVQMENISSFINGLKKL-RVPEY 88
Query: 94 DLFEPSMLFDFGDFFKVLHTLSKLS 118
+LF+ + LF+ D +V+ L LS
Sbjct: 89 ELFQTNDLFEAKDLRQVVICLYSLS 113
>gnl|CDD|219007 pfam06395, CDC24, CDC24 Calponin. Is a calponin homology domain.
Length = 89
Score = 30.3 bits (69), Expect = 0.074
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 35 LALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAEND 94
L R G +C L N L P V+ +C +++ F+ C++ + D
Sbjct: 6 LWKLFRQGYPLCALFNALQPEE--PLPVDTVSSDDAKICKKSVYDFLLACKSELGFPDED 63
Query: 95 LFEPSMLF--DFGDFFKVLHTLSKL 117
LF S LF D F KVL ++K+
Sbjct: 64 LFTISDLFGDDTTGFVKVLQVVNKV 88
>gnl|CDD|221676 pfam12632, Vezatin, Mysoin-binding motif of peroxisomes. Vezatin
is a peroxisome transmembrane receptor that is involved
in membrane-membrane and cell-cell adhesions. In the
movement of peroxisomes it binds to class V and class
VIIa myosins to guide the organelle through the
microtubules and allow pathogens to internalise
themselves into host cells. Vezatin is crucial for
spermatozoan production. In mouse cells it interacts
with the cadherin-catenin complex bridging it to the
C-terminal FERM domain of myosin VIIA.
Length = 246
Score = 29.7 bits (67), Expect = 0.34
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 39 LRDGVVIC--NLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIF-IQICRNYFDIAENDL 95
LR + L NL A + + L ++ + +I + Y E +
Sbjct: 111 LRKALSRTLSLLFYNLKQAISKLLPLANGDNLEKYCDIYDISELDLYEANEYLSEEEAE- 169
Query: 96 FEPSMLFDFGDFFKVLHTLSKLSLC 120
+ L F+ L L K LC
Sbjct: 170 -DNESLKALKILFQRLEFLRKFFLC 193
>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin
(EF-Hand superfamily) [Cytoskeleton].
Length = 612
Score = 28.0 bits (62), Expect = 1.5
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 29 EASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQ---LAQFLCLRNIRIFIQICR 85
E D + RDG+ L+++ P +D ++ + + L F N I I R
Sbjct: 144 EVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQKKNKALNNFQAFENANKVIGIAR 203
>gnl|CDD|182930 PRK11054, helD, DNA helicase IV; Provisional.
Length = 684
Score = 27.6 bits (62), Expect = 2.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 4 DLWRECAAWLTRCGVLREDHKANWSEA 30
+ WR+C AWL R H W+EA
Sbjct: 154 EAWRKCLAWLQDGEAARLQHNQAWTEA 180
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain
fatty acyl-CoA synthetases, which catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters.
Length = 430
Score = 27.3 bits (61), Expect = 2.3
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 3 DDLWRECAAWLTRCGVLREDHKA 25
+L A L GV + D A
Sbjct: 8 LELVDRLAGLLQEKGVRKGDRVA 30
>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to
tyrosine kinase). Protein Tyrosine Kinase (PTK) family;
Receptor related to tyrosine kinase (Ryk); pseudokinase
domain. The PTKc (catalytic domain) family to which this
subfamily belongs, is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ryk is a
receptor tyr kinase (RTK) containing an extracellular
region with two leucine-rich motifs, a transmembrane
segment, and an intracellular inactive pseudokinase
domain. The extracellular region of Ryk shows homology
to the N-terminal domain of Wnt inhibitory factor-1
(WIF) and serves as the ligand (Wnt) binding domain of
Ryk. Ryk is expressed in many different tissues both
during development and in adults, suggesting a
widespread function. It acts as a chemorepulsive axon
guidance receptor of Wnt glycoproteins and is
responsible for the establishment of axon tracts during
the development of the central nervous system. In
addition, studies in mice reveal that Ryk is essential
in skeletal, craniofacial, and cardiac development.
Thus, it appears Ryk is involved in signal transduction
despite its lack of kinase activity. Ryk may function as
an accessory protein that modulates the signals coming
from catalytically active partner RTKs such as the Eph
receptors.
Length = 280
Score = 26.6 bits (59), Expect = 4.0
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 30 ASMSDLALTLRDGVVICNL--LNNLDPACIDMREVNQKPQLA-QFLCLRNIRIFIQICR 85
AS + L L++ ++ L N L + + E + P + ++ N+++F+Q CR
Sbjct: 47 ASEIQVTLLLQESCLLYGLSHQNILPILHVCI-EDGEPPFVLYPYMNWGNLKLFLQQCR 104
>gnl|CDD|204801 pfam11978, MVP_shoulder, Shoulder domain. This domain is found in
the Major Vault Protein and has been called the shoulder
domain. This family includes two bacterial proteins.
This suggests that some bacteria may possess vault
particles.
Length = 118
Score = 25.7 bits (57), Expect = 6.2
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 78 RIFIQIC-RNYFDIAENDLFEPSMLFDFGDFFK 109
R+ +Q+ +FD+ +D + F DF
Sbjct: 18 RLQLQLSYNWHFDVDRDDPADAQKWFSVPDFVG 50
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.140 0.448
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,526,217
Number of extensions: 557558
Number of successful extensions: 549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 545
Number of HSP's successfully gapped: 18
Length of query: 130
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 44
Effective length of database: 7,123,158
Effective search space: 313418952
Effective search space used: 313418952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)