RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6172
(130 letters)
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 139 bits (352), Expect = 4e-40
Identities = 61/123 (49%), Positives = 82/123 (66%)
Query: 4 DLWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVN 63
+LWR+C WL +C VL H+ W A + +LA LRDGV++C LLNNL P I++REVN
Sbjct: 5 ELWRQCTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVN 64
Query: 64 QKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSLCPKV 123
+PQ++QFLCL+NIR F+ C F + ++LFE LFD DF KV++TLS LS P
Sbjct: 65 LRPQMSQFLCLKNIRTFLSTCCEKFGLKRSELFEAFDLFDVQDFGKVIYTLSALSWTPIA 124
Query: 124 QKQ 126
Q +
Sbjct: 125 QNR 127
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Length = 121
Score = 95.7 bits (238), Expect = 7e-27
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 2 SDDLWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMRE 61
+ WL GVL K L +L++GVV+C L+N L P + +
Sbjct: 4 GSSGEEQIVTWLISLGVLESPKKTICD--PEEFLKSSLKNGVVLCKLINRLMPGSV--EK 59
Query: 62 VNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLS 118
PQ + C+ NI F++ C + ++F+P L+ +F KVL TL ++
Sbjct: 60 FCLDPQT-EADCINNINDFLKGCATL----QVEIFDPDDLYSGVNFSKVLSTLLAVN 111
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics,
northeast structural genomics consortiu PSI-biology,
calponin-homology domain; NMR {Homo sapiens}
Length = 126
Score = 93.9 bits (233), Expect = 4e-26
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 4 DLWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVN 63
+ + WL GVL K L +L+DGVV+C LL L P I +V
Sbjct: 12 NSAEQTVTWLITLGVLESPKKTISD--PEGFLQASLKDGVVLCRLLERLLPGTI--EKVY 67
Query: 64 QKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLS 118
+P+ + CL NIR F++ C + + F+ + L+ +F KVL +L L+
Sbjct: 68 PEPRS-ESECLSNIREFLRGCGASLRL---ETFDANDLYQGQNFNKVLSSLVTLN 118
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Length = 144
Score = 92.3 bits (229), Expect = 3e-25
Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 5/117 (4%)
Query: 2 SDDLWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMRE 61
++L W+ + + L++GV++ L+N+L P +
Sbjct: 7 GEELEERLVEWIVVQC----GPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVK 62
Query: 62 VNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLS 118
V + P F + + F++ +Y + + D+F+ L++ D V TL L
Sbjct: 63 VPENPPSMVFKQMEQVAQFLKAAEDYG-VIKTDMFQTVDLYEGKDMAAVQRTLMALG 118
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Length = 155
Score = 81.6 bits (201), Expect = 5e-21
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 6/117 (5%)
Query: 2 SDDLWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMRE 61
DL + W+T + + L+DG V+C L+N L P +
Sbjct: 15 DADLEQILIQWITTQC----RKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVK 70
Query: 62 VNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLS 118
Q + F + I F+Q Y I D+F+ L++ + V TL L
Sbjct: 71 KIQASTM-AFKQMEQISQFLQAAERY-GINTTDIFQTVDLWEGKNMACVQRTLMNLG 125
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle,
cytokine; 2.22A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 203
Score = 76.9 bits (189), Expect = 1e-18
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 12/112 (10%)
Query: 7 RECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKP 66
E W+ L D S +LR+GVV+ L+ P + ++
Sbjct: 58 DEAKKWI--EECLGTD------LGPTSTFEQSLRNGVVLALLVQKFQPDKL--IKIFYSN 107
Query: 67 QLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLS 118
+L QF NI F+ + E FE + +++ + KV++ + LS
Sbjct: 108 EL-QFRHSDNINKFLDFIHGI-GLPEIFHFELTDIYEGKNLPKVIYCIHALS 157
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle,
protein binding; 2.21A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 159
Score = 73.7 bits (181), Expect = 6e-18
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 12/112 (10%)
Query: 7 RECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKP 66
E W+ L D S +LR+GVV+ L+ P + ++
Sbjct: 14 DEAKKWIE--ECLGTD------LGPTSTFEQSLRNGVVLALLVQKFQPDKL--IKIFYSN 63
Query: 67 QLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLS 118
+L QF NI F+ + E FE + +++ + KV++ + LS
Sbjct: 64 EL-QFRHSDNINKFLDFIHGI-GLPEIFHFELTDIYEGKNLPKVIYCIHALS 113
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo
sapiens}
Length = 190
Score = 74.2 bits (182), Expect = 8e-18
Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 22/135 (16%)
Query: 7 RECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKP 66
E W+ L ED ++L LR+GV + L N P + ++++ +
Sbjct: 28 EEAKRWM--EACLGEDLPPT------TELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDRE 79
Query: 67 Q------LAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSLC 120
Q F N+ ++ + + E + ++D + + ++ + LSL
Sbjct: 80 QTRYKATGLHFRHTDNVIQWLNAMDEI-GLPKIFYPETTDIYDRKNMPRCIYCIHALSLY 138
Query: 121 -------PKVQKQKN 128
P++Q
Sbjct: 139 LFKLGLAPQIQDLYG 153
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin
binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Length = 108
Score = 72.0 bits (177), Expect = 8e-18
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
Query: 4 DLWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVN 63
R+ W+ G + L+DGV++C L+N L P +
Sbjct: 3 QTERQLRVWI--EGATGRRIG--------DNFMDGLKDGVILCELINKLQPGSVQ----K 48
Query: 64 QKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLS 118
+ + L NI F++ ++Y + +D+FE + LF+ + +V TL L+
Sbjct: 49 VNDPVQNWHKLENIGNFLRAIKHYG-VKPHDIFEANDLFENTNHTQVQSTLIALA 102
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, protein binding; 2.50A {Homo sapiens}
Length = 193
Score = 74.3 bits (182), Expect = 9e-18
Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 22/134 (16%)
Query: 8 ECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQ 67
E W+ L ED ++L LR+GV + L N P + ++++ + Q
Sbjct: 51 EAKRWME--ACLGEDLPPT------TELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQ 102
Query: 68 LA------QFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSLC- 120
F N+ ++ + + E + ++D + + ++ + LSL
Sbjct: 103 TRYKATGLHFRHTDNVIQWLNAMDEI-GLPKIFYPETTDIYDRKNMPRCIYCIHALSLYL 161
Query: 121 ------PKVQKQKN 128
P++Q
Sbjct: 162 FKLGLAPQIQDLYG 175
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 146
Score = 71.8 bits (176), Expect = 3e-17
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 15/117 (12%)
Query: 2 SDDLWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMRE 61
E W+ + D L+DG ++C L+N L P + +
Sbjct: 15 DPQKEAELRTWIEGLT----------GLSIGPDFQKGLKDGTILCTLMNKLQPGSV--PK 62
Query: 62 VNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLS 118
+N+ Q + L N+ FI+ +Y + DLFE + LF+ G+ +V +L L+
Sbjct: 63 INRSMQ--NWHQLENLSNFIKAMVSY-GMNPVDLFEANDLFESGNMTQVQVSLLALA 116
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 136
Score = 69.5 bits (170), Expect = 2e-16
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 2 SDDLWRECAAWLTRCGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMRE 61
+E W+ V N+ + L+DG+++C +N L P + ++
Sbjct: 15 DHQREQELREWIEG--VTGRRIGNNFMDG--------LKDGIILCEFINKLQPGSV--KK 62
Query: 62 VNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLS 118
+N+ Q + L NI FI+ Y + +D+FE + LF+ + +V TL L+
Sbjct: 63 INESTQ--NWHQLENIGNFIKAITKY-GVKPHDIFEANDLFENTNHTQVQSTLLALA 116
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics;
2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 40.5 bits (94), Expect = 4e-05
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 29 EASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRN 86
+ + L ++DGV++C L+N P ID R +N K L + N + + +
Sbjct: 33 DPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKA 90
Score = 39.7 bits (92), Expect = 1e-04
Identities = 9/57 (15%), Positives = 29/57 (50%)
Query: 31 SMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNY 87
++++ +R+G ++ +L+ + P+ ++ + ++ P F + N I+I +
Sbjct: 293 YVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQL 349
Score = 29.3 bits (65), Expect = 0.34
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 24 KANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQK 65
K + ++S+ + L+D LLN L P D ++ K
Sbjct: 166 KKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAK 207
Score = 27.7 bits (61), Expect = 1.3
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 39 LRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICR 85
L G+ NLL ++P ++ V N + + R
Sbjct: 427 LSSGLFFLNLLWAVEPRVVNWNLV--TKGETDDEKRLNATYIVSVAR 471
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 37.6 bits (87), Expect = 4e-04
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 31 SMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRN 86
+ DL + DG+V+C ++N P ID R +N+K L F+ N+ + +
Sbjct: 52 NTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKK-LTPFIIQENLNLALNSASA 106
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 34.3 bits (78), Expect = 0.006
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 32 MSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRN 86
+++L L DG+ + LL L + R+ NQ+P + + L N+ + ++
Sbjct: 67 IANLQTDLSDGLRLIALLEVLSQKKMH-RKHNQRPTF-RQMQLENVSVALEFLDR 119
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin
homology, actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 32.8 bits (74), Expect = 0.025
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 31 SMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQ---LAQFLCLRNIRIFIQICRN 86
+ +DG+++ L+N+ P ID R +N++ L F C+ N + I +
Sbjct: 40 ETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKA 98
Score = 30.5 bits (68), Expect = 0.15
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 39 LRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICR 85
+ GV + ++L+ + +D V + L ++N R+ I I R
Sbjct: 438 ISTGVFVLDVLHGIKSEYVDYNLV--TDGSTEELAIQNARLAISIAR 482
Score = 25.1 bits (54), Expect = 9.3
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 24 KANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQK 65
KA ++S+ + + DG LLN L P +
Sbjct: 175 KAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAPLQTT 216
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.040
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 26/91 (28%)
Query: 18 VLREDHKANWSEASMSDLALTL---RDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCL 74
++ +D N + D+ + + DG + L ++ +D
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC--------------- 482
Query: 75 RNIRIFIQICRNYFDIAENDLFEPSMLFDFG 105
I R F+ + + DFG
Sbjct: 483 --------IIRLPVKWETTTQFKATHILDFG 505
Score = 32.3 bits (73), Expect = 0.041
Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 48/155 (30%)
Query: 8 ECAAW--LTRCGVLRED-----HKANWS--E----ASMSDLALTLRDGVVIC----NLLN 50
E AA+ L G++ D H S E AS++D +++ V + +
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGH----SLGEYAALASLAD-VMSIESLVEVVFYRGMTMQ 1794
Query: 51 NLDP------ACIDMREVNQKP-QLAQFLCLRNIRIFI-QICRNYFDIAE--NDLFEP-- 98
P + M +N P ++A ++ + ++ + + E N E
Sbjct: 1795 VAVPRDELGRSNYGMIAIN--PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852
Query: 99 ---SMLFDFGDFFKVLHTLSKLSLCPKVQKQKNIK 130
+ GD L L ++ K + I
Sbjct: 1853 YVAA-----GD----LRALDTVTNVLNFIKLQKID 1878
Score = 26.6 bits (58), Expect = 2.8
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 38/83 (45%)
Query: 70 QFLCLRNIRIFI---------------QICRNYFD--IAENDLFE---PSMLFD------ 103
+L +I ++ +NY I F+ S LF
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 104 ------FG------DFFKVLHTL 114
FG D+F+ L L
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDL 176
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction,
alternative splicing, calponin homology domain,
actin-binding, cell membrane; 1.05A {Homo sapiens} PDB:
2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Length = 131
Score = 31.0 bits (70), Expect = 0.057
Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 31 SMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRN 86
+++L DGV + L+ L+ + + P + N+ ++ ++
Sbjct: 41 EVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDS-FEQKVLNVSFAFELMQD 95
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 31.1 bits (70), Expect = 0.077
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 25 ANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQIC 84
A + ++ + + +DG+ +C L++ P ID ++ + I
Sbjct: 154 APYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDP-------------IGNL 200
Query: 85 RNYFDIAENDLFEPSML 101
F++AE L P ML
Sbjct: 201 NTAFEVAEKYLDIPKML 217
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2e9k_A
Length = 121
Score = 30.0 bits (68), Expect = 0.097
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 40 RDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDL 95
+ G+ +C +++ P ID ++++ + + FDIAE +L
Sbjct: 38 KSGLALCAIIHRYRPDLIDFDSLDEQNV-------------EKNNQLAFDIAEKEL 80
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains;
CH domain, mical, structural genomics; NMR {Homo
sapiens} PDB: 2dk9_A
Length = 116
Score = 29.9 bits (68), Expect = 0.11
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 13/62 (20%)
Query: 40 RDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPS 99
DG+ +C L+ L P ++ E+ ++ +AEN+L
Sbjct: 36 ADGLALCALVYRLQPGLLEPSELQGLGA-------------LEATAWALKVAENELGITP 82
Query: 100 ML 101
++
Sbjct: 83 VV 84
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 29.9 bits (67), Expect = 0.19
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 32 MSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRN 86
+ +L L DG+ + LL L + R+ +Q+P + + L N+ + ++
Sbjct: 40 IGNLQTDLSDGLRLIALLEVLSQKRMY-RKYHQRPTF-RQMQLENVSVALEFLDR 92
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain,
actin binding, structural genomics, NPPSFA; NMR {Homo
sapiens} PDB: 2jv9_A 2k3s_A
Length = 128
Score = 28.9 bits (65), Expect = 0.25
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 13/62 (20%)
Query: 40 RDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPS 99
DG+ C L++N P D +++ + + Q F AE P
Sbjct: 36 SDGMAFCALVHNFFPEAFDYGQLSPQNR-------------RQNFEVAFSSAETHADCPQ 82
Query: 100 ML 101
+L
Sbjct: 83 LL 84
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase,
all alpha, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 129
Score = 29.0 bits (65), Expect = 0.29
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 33 SDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRN 86
DL + DGV++ ++ + I+ +N P+ + + NI +
Sbjct: 41 RDLQQDVTDGVLLAQIIQVVANEKIED--INGCPKN-RSQMIENIDACLNFLAA 91
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis
bullosa, actin-binding, alternative splicing, coiled
coil, cytoplasm; 2.75A {Homo sapiens}
Length = 296
Score = 28.9 bits (64), Expect = 0.42
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Query: 31 SMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDI 90
+ + RDG + +++ P IDM +V ++ L + F +
Sbjct: 209 RCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQTNL-------------ENLDQAFSV 255
Query: 91 AENDL 95
AE DL
Sbjct: 256 AERDL 260
>2r8u_A Microtubule-associated protein RP/EB family member 1;
cytoskeleton, acetylation, cell cycle, cell division,
cytoplasm, mitosis, phosphorylation; 1.35A {Homo
sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A
2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Length = 268
Score = 29.0 bits (64), Expect = 0.43
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 39 LRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIF 80
L G C ++ L P I +++V + +L + ++N +I
Sbjct: 38 LCSGAAYCQFMDMLFPGSIALKKVKFQAKL-EHEYIQNFKIL 78
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB:
2d85_A
Length = 124
Score = 28.1 bits (62), Expect = 0.51
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 38 TLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICR 85
T+ + + +L++ + P CI+ V N + + + R
Sbjct: 36 TISSSLAVVDLIDAIQPGCINYDLVKSGNLTED-DKHNNAKYAVSMAR 82
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member
3; CH domain, microtubule-binding, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 159
Score = 28.5 bits (63), Expect = 0.55
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 39 LRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIF 80
L G C ++ L P C+ +R+V + +L + + N ++
Sbjct: 45 LCSGAAYCQFMDMLFPGCVHLRKVKFQAKL-EHEYIHNFKVL 85
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology
domain, structural protein; 2.00A {Mus musculus} SCOP:
a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Length = 245
Score = 28.0 bits (62), Expect = 0.76
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Query: 31 SMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDI 90
+ + RDG + +++ P IDM +V ++ L + F +
Sbjct: 153 RCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNL-------------ENLDQAFSV 199
Query: 91 AENDL 95
AE DL
Sbjct: 200 AERDL 204
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin
homology domain, microtubule plus END, +TIP, protein
binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB:
1pa7_A 1ueg_A 3co1_A 1v5k_A
Length = 123
Score = 27.2 bits (60), Expect = 0.98
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 39 LRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIF 80
L G C ++ L P I +++V + +L + ++N +I
Sbjct: 28 LCSGAAYCQFMDMLFPGSIALKKVKFQAKL-EHEYIQNFKIL 68
>1bhd_A Utrophin; calponin homology, actin binding, structural protein;
2.00A {Homo sapiens} SCOP: a.40.1.1
Length = 118
Score = 27.2 bits (61), Expect = 1.0
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 13/62 (20%)
Query: 40 RDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPS 99
DG+ +L+ P +V + I+ + F A+ L
Sbjct: 37 TDGLAFNAVLHRHKPDLFSWDKVVKMSP-------------IERLEHAFSKAQTYLGIEK 83
Query: 100 ML 101
+L
Sbjct: 84 LL 85
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Homo sapiens}
Length = 127
Score = 27.3 bits (61), Expect = 1.1
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 13/56 (23%)
Query: 40 RDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDL 95
RDG+ +++ P +D + + +N F++AE +L
Sbjct: 36 RDGLAFNAIVHKHRPDLLDFESLKKCNA-------------HYNLQNAFNLAEKEL 78
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA,
riken structural genomics/proteomics initiative, unknown
function; NMR {Mus musculus} SCOP: a.40.3.1
Length = 164
Score = 27.3 bits (60), Expect = 1.1
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 39 LRDGVVICNLLNNLDPACID---MREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDL 95
L +GV + +L+ +D A + + + N++ + +Y+
Sbjct: 33 LTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITSYYHEFLGQQ 92
Query: 96 FEPSMLFDF 104
++ D
Sbjct: 93 ISEELIPDL 101
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin
binding, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 26.5 bits (59), Expect = 1.6
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 40 RDGVVICNLLNNLDPACIDMREVNQK 65
R+G+ C +L++ P ID + +N +
Sbjct: 38 RNGLSFCAILHHFRPDLIDYKSLNPQ 63
>1bkr_A Spectrin beta chain; filamentous actin-binding domain,
cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB:
1aa2_A
Length = 109
Score = 26.1 bits (58), Expect = 2.1
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 13/56 (23%)
Query: 40 RDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDL 95
RDG+ L++ P ID ++ + +N F++AE L
Sbjct: 32 RDGMAFNALIHKHRPDLIDFDKLKKSNA-------------HYNLQNAFNLAEQHL 74
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 26.1 bits (57), Expect = 3.5
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 31 SMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDI 90
++ + + DG+ + L+++ P D V + + Q + F+I
Sbjct: 155 NVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQ------------QSATQRLEHAFNI 202
Query: 91 AENDLFEPSML 101
A L +L
Sbjct: 203 ARYQLGIEKLL 213
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 25.9 bits (58), Expect = 4.3
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 7/34 (20%)
Query: 29 EASMSDLALTLRDGVV---ICNLLNNLDPACIDM 59
EA + ++ + NL +DPAC +
Sbjct: 348 EAWWT--IEMMKRNWYAPTL-NL-TEVDPACAPL 377
>3uws_B Hypothetical protein; clostripain family protein, peptidase_C11,
structural genomi center for structural genomics, JCSG;
HET: MSE; 1.70A {Parabacteroides merdae}
Length = 228
Score = 25.8 bits (56), Expect = 4.6
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 55 ACIDMREVNQ-KPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHT 113
+ E++ K + L + + E P ML+DF D+ K L T
Sbjct: 100 SLTKTSELDNLKSAIHDILADKTESDIYSLDPKNMQRLEYLYRSPGMLYDFNDYIKQLAT 159
Query: 114 LSKLS 118
+
Sbjct: 160 AEQYD 164
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 25.2 bits (54), Expect = 8.0
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 34 DLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDIAEN 93
+ ++ +DG+ C L++ P ID ++ + + FD+AE
Sbjct: 144 NFHISWKDGLGFCALIHRHRPELIDYGKLRKDDP-------------LTNLNTAFDVAEK 190
Query: 94 DLFEPSML 101
L P ML
Sbjct: 191 YLDIPKML 198
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif,
amino acid binding, ligase; 2.08A {Aquifex aeolicus}
SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A
1ygb_A 3htz_A
Length = 465
Score = 25.2 bits (56), Expect = 8.7
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 4/16 (25%)
Query: 96 FEPSML--FDFGDFFK 109
FE ML F FGD+FK
Sbjct: 91 FE--MLGNFSFGDYFK 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.448
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,012,561
Number of extensions: 104036
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 55
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (23.6 bits)