RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6172
(130 letters)
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 144
Score = 81.2 bits (200), Expect = 2e-21
Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 7/130 (5%)
Query: 2 SDDLWRECAAWLTR-CGVLREDHKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMR 60
++L W+ CG + + L++GV++ L+N+L P
Sbjct: 7 GEELEERLVEWIVVQCG-----PDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPV 61
Query: 61 EVNQKPQLAQFLCLRNIRIFIQICRNYFDIAENDLFEPSMLFDFGDFFKVLHTLSKLSLC 120
+V + P F + + F++ +Y + + D+F+ L++ D V TL L
Sbjct: 62 KVPENPPSMVFKQMEQVAQFLKAAEDY-GVIKTDMFQTVDLYEGKDMAAVQRTLMALGSL 120
Query: 121 PKVQKQKNIK 130
+ N +
Sbjct: 121 AVTKNDGNYR 130
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 108
Score = 58.4 bits (141), Expect = 6e-13
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 29 EASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYF 88
+ L+DGV++C L+N L P + + + L NI F++ ++Y
Sbjct: 18 RRIGDNFMDGLKDGVILCELINKLQPGSVQ----KVNDPVQNWHKLENIGNFLRAIKHYG 73
Query: 89 DIAENDLFEPSMLFDFGDFFKVLHTLSKLS 118
+ +D+FE + LF+ + +V TL L+
Sbjct: 74 -VKPHDIFEANDLFENTNHTQVQSTLIALA 102
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 159
Score = 52.7 bits (126), Expect = 3e-10
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 31 SMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRNYFDI 90
S +LR+GVV+ L+ P + + +L QF NI F+
Sbjct: 30 PTSTFEQSLRNGVVLALLVQKFQPDKLIK--IFYSNEL-QFRHSDNINKFLDFIHGIGLP 86
Query: 91 AENDLFEPSMLFDFGDFFKVLHTLSKLSL 119
E FE + +++ + KV++ + LS
Sbjct: 87 -EIFHFELTDIYEGKNLPKVIYCIHALSY 114
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking
domain {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 500
Score = 40.4 bits (94), Expect = 2e-05
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 34 DLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRN 86
L ++DGV++C L+N P ID R +N K L + N + + +
Sbjct: 32 QLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKA 84
Score = 28.8 bits (64), Expect = 0.17
Identities = 9/55 (16%), Positives = 29/55 (52%)
Query: 32 MSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRN 86
++++ +R+G ++ +L+ + P+ ++ + ++ P F + N I+I +
Sbjct: 288 VNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQ 342
Score = 28.8 bits (64), Expect = 0.17
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 38 TLRDGVVICNLLNNLDPACIDMREVNQK 65
+L G+ NLL ++P ++ V +
Sbjct: 420 SLSSGLFFLNLLWAVEPRVVNWNLVTKG 447
Score = 27.3 bits (60), Expect = 0.60
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 31 SMSDLALTLRDGVVICNLLNNLDPACIDMREVNQK 65
++S+ + L+D LLN L P D ++ K
Sbjct: 167 TVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAK 201
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 505
Score = 35.8 bits (82), Expect = 7e-04
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 34 DLALTLRDGVVICNLLNNLDPACIDMREVNQKPQ---LAQFLCLRNIRIFIQICRN 86
+ +DG+++ L+N+ P ID R +N++ L F C+ N + I +
Sbjct: 35 EFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKA 90
Score = 29.2 bits (65), Expect = 0.15
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 39 LRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICR 85
+ GV + ++L+ + +D V + L ++N R+ I I R
Sbjct: 430 ISTGVFVLDVLHGIKSEYVDYNLV--TDGSTEELAIQNARLAISIAR 474
Score = 25.4 bits (55), Expect = 2.6
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 28 SEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQK 65
++S+ + + DG LLN L P +
Sbjct: 171 WPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAPLQTT 208
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin),
actin-crosslinking domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 131
Score = 31.1 bits (70), Expect = 0.016
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 31 SMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRN 86
+ DL + DG+V+C ++N P ID R +N+K L F+ N+ + +
Sbjct: 32 NTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKK-LTPFIIQENLNLALNSASA 86
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1,
N-terminal microtubule binding domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 29.0 bits (65), Expect = 0.076
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 39 LRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIF 80
L G C ++ L P I +++V + +L + ++N +I
Sbjct: 26 LCSGAAYCQFMDMLFPGSIALKKVKFQAKL-EHEYIQNFKIL 66
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 28.8 bits (64), Expect = 0.090
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 31 SMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRN 86
+SDL LRDG + +LL L + ++ +F L+N++I + R+
Sbjct: 29 HISDLYEDLRDGHNLISLLEVLSG-----DSLPREKGRMRFHKLQNVQIALDYLRH 79
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 28.6 bits (64), Expect = 0.094
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 13/79 (16%)
Query: 23 HKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQ 82
+S+ ++ + + DG+ +L+ P +V + I+
Sbjct: 17 TTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSP-------------IE 63
Query: 83 ICRNYFDIAENDLFEPSML 101
+ F A+ L +L
Sbjct: 64 RLEHAFSKAQTYLGIEKLL 82
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 111
Score = 28.8 bits (64), Expect = 0.10
Identities = 11/71 (15%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 23 HKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQ 82
+ + + + +L L+DG + +LL L +++ ++ + L N+ ++
Sbjct: 20 QFSKFGKQHIENLFSDLQDGRRLLDLLEGLTG-----QKLPKEKGSTRVHALNNVNKALR 74
Query: 83 ICRNYFDIAEN 93
+ +N N
Sbjct: 75 VLQNNNVDLVN 85
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 27.6 bits (61), Expect = 0.27
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 39 LRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRN 86
+ + + +L++ + P CI+ V L + N + + + R
Sbjct: 37 ISSSLAVVDLIDAIQPGCINYDLVKSGN-LTEDDKHNNAKYAVSMARR 83
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 164
Score = 26.0 bits (57), Expect = 1.1
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 38 TLRDGVVICNLLNNLDPACID---MREVNQKPQLAQFLCLRNIRIFIQICRNYF 88
L +GV + +L+ +D A + + + N++ + +Y+
Sbjct: 32 QLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITSYY 85
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin),
actin-crosslinking domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 25.0 bits (54), Expect = 2.4
Identities = 7/56 (12%), Positives = 22/56 (39%)
Query: 31 SMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQICRN 86
+++ + ++D +LLN + P E ++ F +++ + +
Sbjct: 29 KINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQ 84
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 24.9 bits (54), Expect = 2.7
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 23 HKANWSEASMSDLALTLRDGVVICNLLNNLDPACIDMREVNQKPQLAQFLCLRNIRIFIQ 82
N+ + ++ + + DG+ + L+++ P D V + + +
Sbjct: 28 STRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQS-----ATQRLEHAFN 82
Query: 83 ICRNYFDI 90
I R I
Sbjct: 83 IARYQLGI 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.140 0.448
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 505,678
Number of extensions: 20924
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 22
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.5 bits)