Query psy6173
Match_columns 137
No_of_seqs 103 out of 119
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 19:34:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1983|consensus 99.3 1.7E-12 3.7E-17 123.1 6.1 116 10-137 474-589 (993)
2 PF08596 Lgl_C: Lethal giant l 98.0 1.1E-05 2.3E-10 70.2 6.3 95 27-135 2-98 (395)
3 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0011 2.4E-08 41.9 4.3 32 28-59 13-44 (47)
4 PF00400 WD40: WD domain, G-be 94.5 0.12 2.6E-06 29.2 4.6 28 27-54 12-39 (39)
5 smart00320 WD40 WD40 repeats. 92.3 0.3 6.5E-06 24.4 3.5 27 28-54 14-40 (40)
6 PF10313 DUF2415: Uncharacteri 85.8 3.2 7E-05 26.0 5.1 30 28-57 2-34 (43)
7 KOG2055|consensus 84.0 1.3 2.8E-05 40.4 3.7 29 28-56 484-512 (514)
8 cd00200 WD40 WD40 domain, foun 84.0 2.5 5.4E-05 30.6 4.7 33 27-59 10-42 (289)
9 cd00200 WD40 WD40 domain, foun 82.0 4.3 9.2E-05 29.4 5.3 33 27-59 52-84 (289)
10 KOG1983|consensus 78.8 5.7 0.00012 38.9 6.4 41 19-59 290-330 (993)
11 KOG1587|consensus 65.3 9.1 0.0002 35.3 4.1 36 24-59 240-276 (555)
12 TIGR03866 PQQ_ABC_repeats PQQ- 65.3 16 0.00034 27.8 4.9 31 29-59 251-282 (300)
13 KOG0318|consensus 62.0 16 0.00034 34.1 5.0 38 22-59 439-476 (603)
14 KOG3881|consensus 61.6 10 0.00023 33.9 3.7 47 9-59 234-280 (412)
15 KOG4640|consensus 55.4 12 0.00025 35.5 3.0 33 27-59 21-53 (665)
16 KOG1036|consensus 54.9 12 0.00025 32.6 2.8 33 27-59 233-265 (323)
17 KOG0307|consensus 54.6 28 0.0006 34.7 5.5 30 29-58 67-100 (1049)
18 PTZ00421 coronin; Provisional 53.3 24 0.00051 31.7 4.6 31 28-58 77-108 (493)
19 PHA02450 hypothetical protein 52.3 7.1 0.00015 25.2 0.8 11 15-25 31-41 (53)
20 KOG1408|consensus 48.7 22 0.00048 34.7 3.8 40 22-62 455-494 (1080)
21 PTZ00420 coronin; Provisional 48.5 41 0.0009 31.0 5.5 32 28-59 169-200 (568)
22 PF08662 eIF2A: Eukaryotic tra 48.5 31 0.00066 26.7 4.0 32 28-59 102-136 (194)
23 TIGR00002 S16 ribosomal protei 47.9 14 0.0003 25.7 1.8 18 5-22 25-42 (78)
24 KOG0296|consensus 46.8 59 0.0013 29.1 5.9 42 10-59 98-139 (399)
25 KOG0639|consensus 45.9 38 0.00081 31.9 4.7 51 3-58 447-497 (705)
26 KOG1332|consensus 44.9 19 0.00041 30.9 2.5 30 29-58 210-243 (299)
27 PF07433 DUF1513: Protein of u 44.6 18 0.00039 31.1 2.3 33 11-47 87-119 (305)
28 PTZ00421 coronin; Provisional 44.3 59 0.0013 29.2 5.7 32 28-59 170-201 (493)
29 PF06753 Bradykinin: Bradykini 43.7 12 0.00026 19.5 0.7 10 105-114 2-11 (19)
30 PRK14524 rpsP 30S ribosomal pr 43.4 18 0.00039 26.1 1.8 18 5-22 26-43 (94)
31 PTZ00420 coronin; Provisional 42.7 41 0.00089 31.1 4.5 32 27-58 75-107 (568)
32 COG3627 PhnJ Uncharacterized e 40.4 18 0.00039 30.3 1.7 23 9-33 221-243 (291)
33 KOG2110|consensus 40.1 53 0.0012 29.3 4.6 33 27-59 219-251 (391)
34 PF14157 YmzC: YmzC-like prote 39.6 77 0.0017 21.5 4.3 23 37-59 28-50 (63)
35 KOG0286|consensus 39.5 68 0.0015 28.1 5.1 31 29-59 58-88 (343)
36 PRK00040 rpsP 30S ribosomal pr 38.3 16 0.00035 25.2 1.0 18 5-22 26-43 (75)
37 PF08954 DUF1900: Domain of un 37.2 71 0.0015 24.1 4.4 32 28-59 12-44 (136)
38 PLN00181 protein SPA1-RELATED; 37.0 52 0.0011 30.6 4.3 29 27-55 764-792 (793)
39 PF08662 eIF2A: Eukaryotic tra 36.9 64 0.0014 24.9 4.2 30 27-56 144-179 (194)
40 KOG0270|consensus 36.6 2E+02 0.0044 26.3 7.7 95 29-133 289-384 (463)
41 KOG0307|consensus 36.5 22 0.00048 35.4 1.8 38 27-65 254-292 (1049)
42 KOG1407|consensus 36.4 24 0.00052 30.5 1.9 29 31-59 194-222 (313)
43 KOG0305|consensus 36.4 34 0.00075 31.2 3.0 31 26-56 343-376 (484)
44 KOG2445|consensus 35.3 60 0.0013 28.6 4.1 41 24-65 110-152 (361)
45 KOG1063|consensus 35.3 69 0.0015 30.9 4.8 46 13-58 34-89 (764)
46 PTZ00152 cofilin/actin-depolym 35.1 30 0.00065 25.6 2.0 10 30-39 74-83 (122)
47 PLN00181 protein SPA1-RELATED; 35.0 63 0.0014 30.1 4.5 30 28-57 485-514 (793)
48 KOG2321|consensus 35.0 60 0.0013 30.8 4.3 40 19-59 222-261 (703)
49 PF00886 Ribosomal_S16: Riboso 34.4 16 0.00034 24.1 0.4 19 5-23 19-37 (62)
50 PRK14525 rpsP 30S ribosomal pr 33.4 32 0.0007 24.5 1.8 18 5-22 27-44 (88)
51 KOG2066|consensus 33.3 32 0.0007 33.4 2.4 27 29-56 115-146 (846)
52 PLN03216 actin depolymerizing 32.8 35 0.00077 25.5 2.1 10 29-38 87-96 (141)
53 KOG0318|consensus 32.5 1.2E+02 0.0027 28.4 5.9 50 23-72 484-533 (603)
54 PF14761 HPS3_N: Hermansky-Pud 32.3 52 0.0011 27.1 3.1 31 28-59 136-166 (215)
55 KOG1009|consensus 32.3 70 0.0015 29.0 4.1 31 27-57 66-96 (434)
56 TIGR03866 PQQ_ABC_repeats PQQ- 31.8 1.1E+02 0.0023 23.2 4.7 29 31-59 161-190 (300)
57 PRK14520 rpsP 30S ribosomal pr 31.7 34 0.00073 26.9 1.9 18 5-22 27-44 (155)
58 PF10282 Lactonase: Lactonase, 31.6 2E+02 0.0044 23.8 6.7 29 30-58 295-324 (345)
59 KOG0645|consensus 31.6 1.4E+02 0.003 25.9 5.7 35 25-59 60-94 (312)
60 KOG0322|consensus 31.4 40 0.00087 29.2 2.4 28 28-55 295-322 (323)
61 PRK14522 rpsP 30S ribosomal pr 31.2 31 0.00067 25.9 1.5 18 5-22 27-44 (116)
62 KOG0263|consensus 30.5 63 0.0014 31.0 3.7 32 28-59 579-610 (707)
63 CHL00005 rps16 ribosomal prote 30.4 26 0.00056 24.6 1.0 18 5-22 26-43 (82)
64 KOG2919|consensus 30.1 53 0.0012 29.2 3.0 30 30-59 299-330 (406)
65 PF03463 eRF1_1: eRF1 domain 1 29.1 64 0.0014 23.7 2.9 21 26-46 67-87 (132)
66 KOG0263|consensus 28.8 84 0.0018 30.2 4.2 32 28-59 621-652 (707)
67 KOG1240|consensus 28.2 85 0.0018 32.3 4.3 32 28-59 1100-1131(1431)
68 PF04762 IKI3: IKI3 family; I 28.1 1.2E+02 0.0027 29.6 5.3 46 13-58 61-107 (928)
69 PRK11028 6-phosphogluconolacto 28.0 88 0.0019 25.3 3.8 28 32-59 279-307 (330)
70 KOG0973|consensus 27.9 62 0.0014 32.0 3.3 33 27-59 326-358 (942)
71 KOG1036|consensus 27.3 85 0.0018 27.4 3.7 34 26-59 13-46 (323)
72 KOG0284|consensus 27.2 77 0.0017 28.9 3.5 30 26-55 96-125 (464)
73 KOG1274|consensus 27.0 73 0.0016 31.5 3.6 32 28-59 190-221 (933)
74 KOG0310|consensus 26.8 74 0.0016 29.2 3.4 29 29-57 71-99 (487)
75 PF07319 DnaI_N: Primosomal pr 26.7 43 0.00093 23.4 1.6 16 103-118 71-86 (94)
76 KOG1539|consensus 26.4 1.2E+02 0.0026 29.9 4.8 33 27-59 494-526 (910)
77 KOG0266|consensus 26.2 1.6E+02 0.0035 25.7 5.4 32 28-59 336-367 (456)
78 KOG3419|consensus 26.2 47 0.001 24.8 1.7 17 6-22 28-44 (112)
79 PF10433 MMS1_N: Mono-function 25.4 1.1E+02 0.0024 26.8 4.3 30 28-57 45-74 (504)
80 COG4004 Uncharacterized protei 25.1 70 0.0015 23.3 2.4 18 28-45 41-58 (96)
81 PF04762 IKI3: IKI3 family; I 24.6 1.8E+02 0.0038 28.6 5.7 50 12-75 113-162 (928)
82 KOG0647|consensus 24.4 93 0.002 27.4 3.4 30 25-54 250-279 (347)
83 PF11532 HnRNP_M: Heterogeneou 24.3 28 0.00061 20.3 0.2 16 7-22 9-25 (30)
84 KOG0293|consensus 23.9 83 0.0018 28.9 3.1 33 27-59 313-345 (519)
85 KOG1086|consensus 23.9 1.4E+02 0.0031 27.7 4.6 82 36-128 464-550 (594)
86 KOG2111|consensus 23.9 1.6E+02 0.0034 26.1 4.7 33 27-59 227-259 (346)
87 COG3490 Uncharacterized protei 23.7 87 0.0019 27.6 3.1 31 12-46 151-181 (366)
88 KOG0650|consensus 23.5 88 0.0019 29.9 3.3 45 4-59 554-598 (733)
89 KOG1445|consensus 23.3 67 0.0015 31.2 2.5 27 17-58 634-660 (1012)
90 KOG2055|consensus 22.9 1.2E+02 0.0026 28.1 3.9 33 27-59 214-246 (514)
91 PF02611 CDH: CDP-diacylglycer 22.5 47 0.001 27.3 1.3 14 122-135 91-104 (222)
92 PF03178 CPSF_A: CPSF A subuni 22.4 1.1E+02 0.0023 25.0 3.3 25 34-59 94-118 (321)
93 PF06058 DCP1: Dcp1-like decap 22.3 65 0.0014 23.8 1.8 15 45-59 24-38 (122)
94 KOG0268|consensus 22.3 1.4E+02 0.003 27.0 4.1 42 15-59 169-221 (433)
95 KOG1009|consensus 22.1 2.4E+02 0.0053 25.6 5.7 57 11-74 333-392 (434)
96 PF15492 Nbas_N: Neuroblastoma 22.1 1.5E+02 0.0033 25.4 4.2 105 28-137 45-162 (282)
97 PRK11028 6-phosphogluconolacto 22.0 2.1E+02 0.0045 23.0 5.0 29 31-59 232-261 (330)
98 PF10282 Lactonase: Lactonase, 21.7 2.9E+02 0.0064 22.9 5.9 30 30-59 90-120 (345)
99 KOG0310|consensus 21.2 2.8E+02 0.006 25.6 5.9 49 28-77 240-292 (487)
100 PF08149 BING4CT: BING4CT (NUC 21.2 1.3E+02 0.0028 21.2 3.1 30 25-54 8-37 (80)
101 KOG2048|consensus 21.0 1.7E+02 0.0037 28.1 4.7 46 12-59 463-508 (691)
102 PRK14521 rpsP 30S ribosomal pr 21.0 68 0.0015 25.9 1.8 17 5-21 27-43 (186)
103 KOG0290|consensus 20.6 1.1E+02 0.0024 27.0 3.1 29 28-56 289-318 (364)
104 PF11768 DUF3312: Protein of u 20.5 1.5E+02 0.0032 27.7 4.1 33 27-59 300-332 (545)
105 KOG0645|consensus 20.3 97 0.0021 26.9 2.7 30 28-59 235-264 (312)
106 PF13889 Chromosome_seg: Chrom 20.2 91 0.002 20.5 2.0 18 26-43 4-21 (56)
No 1
>KOG1983|consensus
Probab=99.32 E-value=1.7e-12 Score=123.08 Aligned_cols=116 Identities=40% Similarity=0.622 Sum_probs=109.4
Q ss_pred CCcccccccCCCCCCccceEEEEEeecCCCeEEEecccceEEEEEecCCCcceeeEeEEEeeeeeCCCCccccCcccccc
Q psy6173 10 SLNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVSDRDSFVWKGHARLGV 89 (137)
Q Consensus 10 ~PfrkvG~~DP~sDDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e~~~~ei~~l~v~l~~d~e~~~w~g~~~L~v 89 (137)
..|+.=|+||||+||+++.++++.+|+.++.++|+|++||+.+.++.... ++..+...++++.+++..+.|++|..|..
T Consensus 474 ~~~~t~~~~~~~~~~~~~~~~~~~ic~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 552 (993)
T KOG1983|consen 474 SAFLTDGSFDPYSDDPRLGVQKPALCKKSGQLAVGGTAGQILTLELTDSI-VTGAVSFFCADLNQDVSVFKWKGHDRLSP 552 (993)
T ss_pred cccccCCcCCcccccccccCCcchhcccccccccccccceeeeeeecccc-cccceeeeehhhhhccccccccCchhccc
Confidence 44554588999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred ccCCCCCCCCccccccccCCCCcceEEEEeCCCcceeEEEeeccccCC
Q psy6173 90 KHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWGEY 137 (137)
Q Consensus 90 r~~~~~~~~~vk~~~~~~ppGfQ~~lv~ql~PP~~ITsLal~SsyGLv 137 (137)
+. +++..+.|+|+...+|+.||..+++.++.+.|.++
T Consensus 553 ~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 589 (993)
T KOG1983|consen 553 RS-----------NPLSLPDGFQPFVDVQDRPPAGVTQGTLASGWILV 589 (993)
T ss_pred cc-----------cccCCCCccccceEEEecCCcceeeeccccceecc
Confidence 97 88899999999999999999999999999999875
No 2
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.03 E-value=1.1e-05 Score=70.23 Aligned_cols=95 Identities=22% Similarity=0.307 Sum_probs=47.1
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCCccee-eEeEEEeeeeeCCCCccccCcccc-ccccCCCCCCCCccccc
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDV-TVKISTMNIVSDRDSFVWKGHARL-GVKHTDSKDKEPSKALL 104 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e~~~~-ei~~l~v~l~~d~e~~~w~g~~~L-~vr~~~~~~~~~vk~~~ 104 (137)
++|+.|+||++++-|+|+-.+|.|+||||.+.. ... .-.--..+.-..+....+. ...| .++. | .+
T Consensus 2 ~~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~-~~~~~~~~~~~~~~~~~~~~~~~-~~~l~di~~---------r-~~ 69 (395)
T PF08596_consen 2 VSVTHVSFAPETLELAVGLESGEVVLFKFGKNQ-NYGNREQPPDLDYNFRRFSLNNS-PGKLTDISD---------R-AP 69 (395)
T ss_dssp --EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--GGGS-S-SEEE-GG---------G---
T ss_pred ceEEEEEecCCCceEEEEccCCcEEEEEcccCC-CCCccCCCcccCcccccccccCC-CcceEEehh---------h-CC
Confidence 689999999999999999999999999999875 222 1111111111000000011 1111 1111 0 11
Q ss_pred cccCCCCcceEEEEeCCCcceeEEEeecccc
Q psy6173 105 KSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 135 (137)
Q Consensus 105 ~~~ppGfQ~~lv~ql~PP~~ITsLal~SsyG 135 (137)
.....||+|-.++++. -.+||||+. |.=|
T Consensus 70 ~~~~~gf~P~~l~~~~-~g~vtal~~-S~iG 98 (395)
T PF08596_consen 70 PSLKEGFLPLTLLDAK-QGPVTALKN-SDIG 98 (395)
T ss_dssp TT-SEEEEEEEEE----S-SEEEEEE--BTS
T ss_pred cccccccCchhheecc-CCcEeEEec-CCCc
Confidence 2234589999999999 899999998 3443
No 3
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.09 E-value=0.0011 Score=41.87 Aligned_cols=32 Identities=19% Similarity=0.472 Sum_probs=29.1
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-|+.+.|||....|+++-..|+|.+||++-+.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 49999999999999999999999999996543
No 4
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=94.52 E-value=0.12 Score=29.15 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=26.0
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEE
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAK 54 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~ 54 (137)
-.|.-|.|.|..+.|++++..|.|-+|+
T Consensus 12 ~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 12 SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4799999999999999999999999985
No 5
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=92.30 E-value=0.3 Score=24.44 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=24.2
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEE
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAK 54 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~ 54 (137)
.|..+.|.+..+.++.++..|++.+|+
T Consensus 14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 689999999999999999999998873
No 6
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=85.78 E-value=3.2 Score=25.95 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=27.8
Q ss_pred eEEEEEeecCCC---eEEEecccceEEEEEecC
Q psy6173 28 AVKKICFCPVTG---TLLIAGTAGHVILAKLST 57 (137)
Q Consensus 28 AIq~I~lCpeSr---~L~VaG~sG~Vil~~f~~ 57 (137)
||.-+.|||+++ .|+.+--.|+|-|+..+.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 788999999988 999999999999999874
No 7
>KOG2055|consensus
Probab=83.99 E-value=1.3 Score=40.37 Aligned_cols=29 Identities=38% Similarity=0.550 Sum_probs=26.8
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEec
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLS 56 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~ 56 (137)
-++-++|-|.||.||||..+|+|-|||+.
T Consensus 484 ~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 484 HVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceEEEEecCCCceEEeecCCCceeeEeec
Confidence 47788999999999999999999999985
No 8
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=83.98 E-value=2.5 Score=30.62 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=29.4
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|.|..+.|++++..|+|.+|++...+
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~ 42 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE 42 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC
Confidence 358999999999999999999999999998654
No 9
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=82.04 E-value=4.3 Score=29.37 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=29.2
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
..|..+.|+|.+..|++++..|+|.+|++...+
T Consensus 52 ~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 52 GPVRDVAASADGTYLASGSSDKTIRLWDLETGE 84 (289)
T ss_pred cceeEEEECCCCCEEEEEcCCCeEEEEEcCccc
Confidence 467899999999999999999999999998744
No 10
>KOG1983|consensus
Probab=78.77 E-value=5.7 Score=38.89 Aligned_cols=41 Identities=12% Similarity=-0.015 Sum_probs=35.2
Q ss_pred CCCCCCccceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 19 DPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 19 DP~sDDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
+++.++-+.+.+.+.||.++..++++|.++.|+++.+..++
T Consensus 290 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 330 (993)
T KOG1983|consen 290 NRILTELPRSGKPFWICQGGMPRGSYGDRHCVSVEHDGTQV 330 (993)
T ss_pred cccccccccccCcEEEecCCCccceecccceeEeecCCcee
Confidence 34556666899999999999999999999999999976666
No 11
>KOG1587|consensus
Probab=65.33 E-value=9.1 Score=35.32 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=31.9
Q ss_pred CccceEEEEEeecCCCeEEEeccc-ceEEEEEecCCC
Q psy6173 24 DPRLAVKKICFCPVTGTLLIAGTA-GHVILAKLSTKT 59 (137)
Q Consensus 24 DprlAIq~I~lCpeSr~L~VaG~s-G~Vil~~f~~~e 59 (137)
+.+=.|.-+.|||....||++|.- |||++|..++..
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~ 276 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGS 276 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCC
Confidence 445678999999999999999986 999999999877
No 12
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=65.29 E-value=16 Score=27.77 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=25.0
Q ss_pred EEEEEeecCCCeEEEe-cccceEEEEEecCCC
Q psy6173 29 VKKICFCPVTGTLLIA-GTAGHVILAKLSTKT 59 (137)
Q Consensus 29 Iq~I~lCpeSr~L~Va-G~sG~Vil~~f~~~e 59 (137)
+..++|.|....|+++ +.+|.|.+|.+...+
T Consensus 251 ~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 251 VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred cceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 4456788988888886 568999999998777
No 13
>KOG0318|consensus
Probab=61.96 E-value=16 Score=34.09 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=34.1
Q ss_pred CCCccceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 22 SDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 22 sDDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
+-+.+|...-+++||..-..||+|..|.|-||+++..+
T Consensus 439 ~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~ 476 (603)
T KOG0318|consen 439 SIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDE 476 (603)
T ss_pred eeccccccceEEEcCCCCEEEEecccceEEEEEecCCc
Confidence 44567888899999999999999999999999999866
No 14
>KOG3881|consensus
Probab=61.56 E-value=10 Score=33.86 Aligned_cols=47 Identities=17% Similarity=0.301 Sum_probs=40.0
Q ss_pred CCCcccccccCCCCCCccceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 9 ESLNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 9 ~~PfrkvG~~DP~sDDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.+..|.|-.|| |.+.| |.-+.|-|....+.+|.+.|++-.|..+.--
T Consensus 234 ~~qRRPV~~fd-~~E~~---is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 234 RHQRRPVAQFD-FLENP---ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred cccCcceeEec-cccCc---ceeeeecCCCcEEEEecccchhheecccCce
Confidence 36677888888 77655 9999999999999999999999999987654
No 15
>KOG4640|consensus
Probab=55.43 E-value=12 Score=35.47 Aligned_cols=33 Identities=15% Similarity=0.367 Sum_probs=30.5
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.-|..|.|||+--.++.+-++|+|+++|+|-+-
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR 53 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQR 53 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccce
Confidence 789999999999999999999999999999554
No 16
>KOG1036|consensus
Probab=54.91 E-value=12 Score=32.60 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=28.8
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
+-|.-|+|=|..++|+.||..|.|.+|+...-.
T Consensus 233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred EEeceeEeccccceEEecCCCceEEEccCcchh
Confidence 568889999999999999999999999876433
No 17
>KOG0307|consensus
Probab=54.60 E-value=28 Score=34.71 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=23.8
Q ss_pred EEEEEeecCCCe----EEEecccceEEEEEecCC
Q psy6173 29 VKKICFCPVTGT----LLIAGTAGHVILAKLSTK 58 (137)
Q Consensus 29 Iq~I~lCpeSr~----L~VaG~sG~Vil~~f~~~ 58 (137)
-+++.||+.--. ++-|+..|.|++|.-.+.
T Consensus 67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~ 100 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI 100 (1049)
T ss_pred ceeeeecccCCCccceeeccccCCceEEecchhh
Confidence 368889987555 777788899999998774
No 18
>PTZ00421 coronin; Provisional
Probab=53.29 E-value=24 Score=31.74 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=27.5
Q ss_pred eEEEEEeec-CCCeEEEecccceEEEEEecCC
Q psy6173 28 AVKKICFCP-VTGTLLIAGTAGHVILAKLSTK 58 (137)
Q Consensus 28 AIq~I~lCp-eSr~L~VaG~sG~Vil~~f~~~ 58 (137)
.|..+.|+| ....|++|+..|.|.+|++...
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~ 108 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEE 108 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCC
Confidence 589999999 6778999999999999999754
No 19
>PHA02450 hypothetical protein
Probab=52.26 E-value=7.1 Score=25.21 Aligned_cols=11 Identities=45% Similarity=0.903 Sum_probs=8.7
Q ss_pred ccccCCCCCCc
Q psy6173 15 VGCFDPYSDDP 25 (137)
Q Consensus 15 vG~~DP~sDDp 25 (137)
-|.||||+.|.
T Consensus 31 pg~fdpfcpdh 41 (53)
T PHA02450 31 PGQFDPFCPDH 41 (53)
T ss_pred CCccCCCCCCC
Confidence 48999998765
No 20
>KOG1408|consensus
Probab=48.69 E-value=22 Score=34.70 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=36.4
Q ss_pred CCCccceEEEEEeecCCCeEEEecccceEEEEEecCCCcce
Q psy6173 22 SDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTD 62 (137)
Q Consensus 22 sDDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e~~~ 62 (137)
.-|+|+.|.-|+.-|+-..|+.+-.+|.+-||.+-..+ -+
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-~~ 494 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-YT 494 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhhh-hh
Confidence 46889999999999999999999999999999998776 44
No 21
>PTZ00420 coronin; Provisional
Probab=48.54 E-value=41 Score=31.04 Aligned_cols=32 Identities=6% Similarity=-0.004 Sum_probs=28.9
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|..++|.|....|++++..|+|.+|..+..+
T Consensus 169 ~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 169 KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred cEEEEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence 58889999999999999999999999998766
No 22
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=48.49 E-value=31 Score=26.71 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=27.0
Q ss_pred eEEEEEeecCCCeEEEecc---cceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGT---AGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~---sG~Vil~~f~~~e 59 (137)
.+..|+|-|..+.|++||. .|.+-+|..++.+
T Consensus 102 ~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 102 PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 5567999999999999985 4789999998666
No 23
>TIGR00002 S16 ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles.
Probab=47.85 E-value=14 Score=25.69 Aligned_cols=18 Identities=17% Similarity=0.427 Sum_probs=15.3
Q ss_pred CCCCCCCcccccccCCCC
Q psy6173 5 GPRSESLNLNVGCFDPYS 22 (137)
Q Consensus 5 ~~~~~~PfrkvG~~DP~s 22 (137)
-+|+.++.-++|.|||-.
T Consensus 25 ~~RdGk~iE~lG~YnP~~ 42 (78)
T TIGR00002 25 SRRDGRYIEELGFYNPLT 42 (78)
T ss_pred CCCCCCceeEeeeccCCC
Confidence 467888999999999964
No 24
>KOG0296|consensus
Probab=46.76 E-value=59 Score=29.11 Aligned_cols=42 Identities=24% Similarity=0.172 Sum_probs=34.6
Q ss_pred CCcccccccCCCCCCccceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 10 SLNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 10 ~PfrkvG~~DP~sDDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
=++-..|+=| .|.-+.|--+...|+.|+-+|.|.||+.++..
T Consensus 98 ~~~eltgHKD--------SVt~~~FshdgtlLATGdmsG~v~v~~~stg~ 139 (399)
T KOG0296|consen 98 FAGELTGHKD--------SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG 139 (399)
T ss_pred ceeEecCCCC--------ceEEEEEccCceEEEecCCCccEEEEEcccCc
Confidence 4555566666 57888999999999999999999999998665
No 25
>KOG0639|consensus
Probab=45.93 E-value=38 Score=31.86 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=38.5
Q ss_pred cCCCCCCCCcccccccCCCCCCccceEEEEEeecCCCeEEEecccceEEEEEecCC
Q psy6173 3 MSGPRSESLNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTK 58 (137)
Q Consensus 3 ~~~~~~~~PfrkvG~~DP~sDDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~ 58 (137)
+++++...|....-+-.+ | -=|.-..|-|.+|+|+|+|-+..|.||.+-..
T Consensus 447 is~pg~k~PvsqLdcl~r---d--nyiRSckL~pdgrtLivGGeastlsiWDLAap 497 (705)
T KOG0639|consen 447 ISQPGNKSPVSQLDCLNR---D--NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAP 497 (705)
T ss_pred ccCCCCCCccccccccCc---c--cceeeeEecCCCceEEeccccceeeeeeccCC
Confidence 456667777666555533 1 24777788999999999999999999998643
No 26
>KOG1332|consensus
Probab=44.93 E-value=19 Score=30.87 Aligned_cols=30 Identities=23% Similarity=0.478 Sum_probs=25.6
Q ss_pred EEEEEeecCCC----eEEEecccceEEEEEecCC
Q psy6173 29 VKKICFCPVTG----TLLIAGTAGHVILAKLSTK 58 (137)
Q Consensus 29 Iq~I~lCpeSr----~L~VaG~sG~Vil~~f~~~ 58 (137)
|..++|||..| +++.++..|+|+||+-+++
T Consensus 210 VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 210 VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred hhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 66789999985 6888899999999999844
No 27
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.58 E-value=18 Score=31.12 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=28.9
Q ss_pred CcccccccCCCCCCccceEEEEEeecCCCeEEEeccc
Q psy6173 11 LNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTA 47 (137)
Q Consensus 11 PfrkvG~~DP~sDDprlAIq~I~lCpeSr~L~VaG~s 47 (137)
=|+|+|.|+-+--+| +.|.|-|...+|+||+=+
T Consensus 87 ~~~ri~E~~s~GIGP----Hel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGP----HELLLMPDGETLVVANGG 119 (305)
T ss_pred CcEEEeEecCCCcCh----hhEEEcCCCCEEEEEcCC
Confidence 689999999999888 778899999999999744
No 28
>PTZ00421 coronin; Provisional
Probab=44.26 E-value=59 Score=29.24 Aligned_cols=32 Identities=6% Similarity=0.004 Sum_probs=28.9
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|.-|.|.|....|++++..|.|.+|.++...
T Consensus 170 ~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 170 QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred ceEEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence 48889999999999999999999999998655
No 29
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=43.66 E-value=12 Score=19.54 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=8.0
Q ss_pred cccCCCCcce
Q psy6173 105 KSVSPGFQPT 114 (137)
Q Consensus 105 ~~~ppGfQ~~ 114 (137)
+|.||||-|.
T Consensus 2 qr~p~gftpf 11 (19)
T PF06753_consen 2 QRRPPGFTPF 11 (19)
T ss_pred CccCCCCCcc
Confidence 5789999875
No 30
>PRK14524 rpsP 30S ribosomal protein S16; Provisional
Probab=43.42 E-value=18 Score=26.10 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=15.1
Q ss_pred CCCCCCCcccccccCCCC
Q psy6173 5 GPRSESLNLNVGCFDPYS 22 (137)
Q Consensus 5 ~~~~~~PfrkvG~~DP~s 22 (137)
-+|+.++.-++|.|||-.
T Consensus 26 ~~RdGk~iE~lG~YnP~~ 43 (94)
T PRK14524 26 KRRDGAYIESLGYYNPLK 43 (94)
T ss_pred CCCCCCceeEeeecCCCC
Confidence 367888899999999974
No 31
>PTZ00420 coronin; Provisional
Probab=42.75 E-value=41 Score=31.08 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=28.0
Q ss_pred ceEEEEEeecC-CCeEEEecccceEEEEEecCC
Q psy6173 27 LAVKKICFCPV-TGTLLIAGTAGHVILAKLSTK 58 (137)
Q Consensus 27 lAIq~I~lCpe-Sr~L~VaG~sG~Vil~~f~~~ 58 (137)
-+|.-|.|+|. ..+|+.||..|.|.||++...
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~ 107 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHN 107 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Confidence 37999999997 689999999999999999753
No 32
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=40.44 E-value=18 Score=30.34 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.6
Q ss_pred CCCcccccccCCCCCCccceEEEEE
Q psy6173 9 ESLNLNVGCFDPYSDDPRLAVKKIC 33 (137)
Q Consensus 9 ~~PfrkvG~~DP~sDDprlAIq~I~ 33 (137)
-|||.+|-+.| |+|.| |-||.-.
T Consensus 221 vPP~T~V~SLD-F~DHP-Fevq~wd 243 (291)
T COG3627 221 VPPFTRVESLD-FDDHP-FEVQQWD 243 (291)
T ss_pred cCCcceeeecc-cCCCc-ceeeecc
Confidence 48999999999 77777 9999864
No 33
>KOG2110|consensus
Probab=40.14 E-value=53 Score=29.33 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=30.6
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.-|--|+|-|.+-.|++++..+.|=+||+.+..
T Consensus 219 ~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 219 VSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 578889999999999999999999999999877
No 34
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=39.61 E-value=77 Score=21.45 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=18.6
Q ss_pred CCCeEEEecccceEEEEEecCCC
Q psy6173 37 VTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 37 eSr~L~VaG~sG~Vil~~f~~~e 59 (137)
+-++++|-|-+|+|=+|||+...
T Consensus 28 ~~N~Fav~~e~~~iKIfkyd~~t 50 (63)
T PF14157_consen 28 EHNHFAVVDEDGQIKIFKYDEDT 50 (63)
T ss_dssp STTEEEEE-ETTEEEEEEEETTT
T ss_pred cCCEEEEEecCCeEEEEEeCCCC
Confidence 46778888999999999998665
No 35
>KOG0286|consensus
Probab=39.46 E-value=68 Score=28.12 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=26.6
Q ss_pred EEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 29 VKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 29 Iq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
|--+.|+++||.|+.|-..|-+|||.--...
T Consensus 58 i~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn 88 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSASQDGKLIVWDSFTTN 88 (343)
T ss_pred eeeeEecCCcCeEEeeccCCeEEEEEccccc
Confidence 4457899999999999999999999875555
No 36
>PRK00040 rpsP 30S ribosomal protein S16; Reviewed
Probab=38.34 E-value=16 Score=25.17 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=15.3
Q ss_pred CCCCCCCcccccccCCCC
Q psy6173 5 GPRSESLNLNVGCFDPYS 22 (137)
Q Consensus 5 ~~~~~~PfrkvG~~DP~s 22 (137)
-+|+.++.-++|.|||-.
T Consensus 26 ~~RdGk~iE~lG~ydP~~ 43 (75)
T PRK00040 26 SPRDGRFIERVGFYNPLA 43 (75)
T ss_pred CCCCCCceeEEeecCCCC
Confidence 467888899999999974
No 37
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=37.20 E-value=71 Score=24.15 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=24.2
Q ss_pred eEEEEEeecCCCeEEEeccc-ceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTA-GHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~s-G~Vil~~f~~~e 59 (137)
++-.-++++.+++|-++|.+ |.|-.|++++++
T Consensus 12 g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~ 44 (136)
T PF08954_consen 12 GVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDES 44 (136)
T ss_dssp S-EEEEE-TTT-EEEEEETT-S-EEEEEE-SST
T ss_pred ceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCC
Confidence 67778899999999999998 789999998775
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=37.03 E-value=52 Score=30.63 Aligned_cols=29 Identities=17% Similarity=0.472 Sum_probs=26.6
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEe
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKL 55 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f 55 (137)
-.|..++|.|++.+|+.|+..|.|.+|++
T Consensus 764 ~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 764 QFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 36899999999999999999999999986
No 39
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=36.86 E-value=64 Score=24.92 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=23.4
Q ss_pred ceEEEEEeecCCCeEEEeccc------ceEEEEEec
Q psy6173 27 LAVKKICFCPVTGTLLIAGTA------GHVILAKLS 56 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~s------G~Vil~~f~ 56 (137)
..+..++|.|.+|.|++|.++ ..+.||.|.
T Consensus 144 ~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 144 SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 357899999999999999875 445666664
No 40
>KOG0270|consensus
Probab=36.62 E-value=2e+02 Score=26.32 Aligned_cols=95 Identities=17% Similarity=0.336 Sum_probs=53.0
Q ss_pred EEEEEeecCCCeEEEecc-cceEEEEEecCCCcceeeEeEEEeeeeeCCCCccccCccccccccCCCCCCCCcccccccc
Q psy6173 29 VKKICFCPVTGTLLIAGT-AGHVILAKLSTKTSTDVTVKISTMNIVSDRDSFVWKGHARLGVKHTDSKDKEPSKALLKSV 107 (137)
Q Consensus 29 Iq~I~lCpeSr~L~VaG~-sG~Vil~~f~~~e~~~~ei~~l~v~l~~d~e~~~w~g~~~L~vr~~~~~~~~~vk~~~~~~ 107 (137)
||.+.|=|......+.|. .|+|.|+..+....+..++.+ -.+.|...|+-|.....--+. ++..|+.-- .+
T Consensus 289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-----~g~VEkv~w~~~se~~f~~~t--ddG~v~~~D-~R 360 (463)
T KOG0270|consen 289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF-----DGEVEKVAWDPHSENSFFVST--DDGTVYYFD-IR 360 (463)
T ss_pred eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-----ccceEEEEecCCCceeEEEec--CCceEEeee-cC
Confidence 899999998887766665 799999999964424444432 223344556555433221110 000011111 23
Q ss_pred CCCCcceEEEEeCCCcceeEEEeecc
Q psy6173 108 SPGFQPTCLVQLHPPAAVTSLVLHTE 133 (137)
Q Consensus 108 ppGfQ~~lv~ql~PP~~ITsLal~Ss 133 (137)
.+| +|-.-+|-+ -+.|++|++|..
T Consensus 361 ~~~-~~vwt~~AH-d~~ISgl~~n~~ 384 (463)
T KOG0270|consen 361 NPG-KPVWTLKAH-DDEISGLSVNIQ 384 (463)
T ss_pred CCC-CceeEEEec-cCCcceEEecCC
Confidence 455 555555554 247888888753
No 41
>KOG0307|consensus
Probab=36.47 E-value=22 Score=35.38 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=32.7
Q ss_pred ceEEEEEeecCC-CeEEEecccceEEEEEecCCCcceeeE
Q psy6173 27 LAVKKICFCPVT-GTLLIAGTAGHVILAKLSTKTSTDVTV 65 (137)
Q Consensus 27 lAIq~I~lCpeS-r~L~VaG~sG~Vil~~f~~~e~~~~ei 65 (137)
-+|-.+.||++. +.|+..|..++|+.+.-+..| .-.++
T Consensus 254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE-vl~~~ 292 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE-VLGEL 292 (1049)
T ss_pred cceeeeccCCCCchhhhcccCCCCeeEecCCCce-Eeeec
Confidence 478889999999 999999999999999998877 55444
No 42
>KOG1407|consensus
Probab=36.42 E-value=24 Score=30.46 Aligned_cols=29 Identities=17% Similarity=0.056 Sum_probs=25.1
Q ss_pred EEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 31 KICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 31 ~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-|.|.|..|+|+++++.+.|.||..++--
T Consensus 194 cI~f~p~GryfA~GsADAlvSLWD~~ELi 222 (313)
T KOG1407|consen 194 CIEFDPDGRYFATGSADALVSLWDVDELI 222 (313)
T ss_pred EEEECCCCceEeeccccceeeccChhHhh
Confidence 37799999999999999999999876543
No 43
>KOG0305|consensus
Probab=36.36 E-value=34 Score=31.22 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=20.1
Q ss_pred cceEEEEEeecCCCeEEEeccc---ceEEEEEec
Q psy6173 26 RLAVKKICFCPVTGTLLIAGTA---GHVILAKLS 56 (137)
Q Consensus 26 rlAIq~I~lCpeSr~L~VaG~s---G~Vil~~f~ 56 (137)
.-||+.|+|||..+=|...|-+ +++-.|.-+
T Consensus 343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~ 376 (484)
T KOG0305|consen 343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN 376 (484)
T ss_pred ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC
Confidence 4699999999986555444444 455554444
No 44
>KOG2445|consensus
Probab=35.35 E-value=60 Score=28.65 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=33.1
Q ss_pred CccceEEEEEeecC--CCeEEEecccceEEEEEecCCCcceeeE
Q psy6173 24 DPRLAVKKICFCPV--TGTLLIAGTAGHVILAKLSTKTSTDVTV 65 (137)
Q Consensus 24 DprlAIq~I~lCpe--Sr~L~VaG~sG~Vil~~f~~~e~~~~ei 65 (137)
|.|=+|.-|.|||. +-+|+.+++.|.+-||+.-+-- ....+
T Consensus 110 DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-nLs~W 152 (361)
T KOG2445|consen 110 DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-NLSQW 152 (361)
T ss_pred cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc-ccccc
Confidence 56789999999995 7799999999999999986554 33333
No 45
>KOG1063|consensus
Probab=35.32 E-value=69 Score=30.89 Aligned_cols=46 Identities=24% Similarity=0.345 Sum_probs=0.0
Q ss_pred ccccccCCC-------CCCccceEEEEEeecCCC---eEEEecccceEEEEEecCC
Q psy6173 13 LNVGCFDPY-------SDDPRLAVKKICFCPVTG---TLLIAGTAGHVILAKLSTK 58 (137)
Q Consensus 13 rkvG~~DP~-------sDDprlAIq~I~lCpeSr---~L~VaG~sG~Vil~~f~~~ 58 (137)
+-|-.|||. .+-..-+|.=+.|=|.|- .|++||..|||++|+|+++
T Consensus 34 ~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~ 89 (764)
T KOG1063|consen 34 PAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDE 89 (764)
T ss_pred ceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeeh
No 46
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=35.10 E-value=30 Score=25.64 Aligned_cols=10 Identities=0% Similarity=0.072 Sum_probs=8.0
Q ss_pred EEEEeecCCC
Q psy6173 30 KKICFCPVTG 39 (137)
Q Consensus 30 q~I~lCpeSr 39 (137)
-.|+|||++-
T Consensus 74 vFI~w~Pd~a 83 (122)
T PTZ00152 74 HFFMYARESS 83 (122)
T ss_pred EEEEECCCCC
Confidence 6888999864
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=35.03 E-value=63 Score=30.10 Aligned_cols=30 Identities=17% Similarity=0.093 Sum_probs=27.0
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
.|.-|.|-|...+|++||..|.|.||+++.
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~ 514 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECES 514 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCc
Confidence 477889999999999999999999999864
No 48
>KOG2321|consensus
Probab=34.96 E-value=60 Score=30.85 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=32.6
Q ss_pred CCCCCCccceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 19 DPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 19 DP~sDDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
+|+.|.- -+|+.|.|--..-.+.|+-..|+|.+|.++...
T Consensus 222 ~pg~~~~-~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 222 HPGGDAA-PSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred Ccccccc-CcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 5665555 579999998777788999999999999998655
No 49
>PF00886 Ribosomal_S16: Ribosomal protein S16; InterPro: IPR000307 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups: Eubacterial S16. Algal and plant chloroplast S16. Cyanelle S16. Neurospora crassa mitochondrial S24 (cyt-21). S16 proteins have about 100 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2Y14_P 3UZ6_S 2J02_P 1HNZ_P 3V26_P 3KNL_P 1N34_P 2J00_P 1HNW_P 3OHC_P ....
Probab=34.39 E-value=16 Score=24.15 Aligned_cols=19 Identities=26% Similarity=0.644 Sum_probs=16.0
Q ss_pred CCCCCCCcccccccCCCCC
Q psy6173 5 GPRSESLNLNVGCFDPYSD 23 (137)
Q Consensus 5 ~~~~~~PfrkvG~~DP~sD 23 (137)
-+|+.++.-.+|.|||-.+
T Consensus 19 ~~RdGk~iE~lG~YdP~~~ 37 (62)
T PF00886_consen 19 SPRDGKFIEELGFYDPIPN 37 (62)
T ss_dssp SSTTSSESEEEEEEETTSS
T ss_pred cccccchhhccceEcCCCC
Confidence 3677889999999999865
No 50
>PRK14525 rpsP 30S ribosomal protein S16; Provisional
Probab=33.37 E-value=32 Score=24.50 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=14.6
Q ss_pred CCCCCCCcccccccCCCC
Q psy6173 5 GPRSESLNLNVGCFDPYS 22 (137)
Q Consensus 5 ~~~~~~PfrkvG~~DP~s 22 (137)
-+|+.++.-++|.|||-.
T Consensus 27 ~~RdGk~IE~lG~YnP~~ 44 (88)
T PRK14525 27 NARDGKYLEDVGIYDPTK 44 (88)
T ss_pred CCCCCCceeEEecccCCC
Confidence 467788888999999964
No 51
>KOG2066|consensus
Probab=33.34 E-value=32 Score=33.42 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=23.9
Q ss_pred EEEEEeecC-----CCeEEEecccceEEEEEec
Q psy6173 29 VKKICFCPV-----TGTLLIAGTAGHVILAKLS 56 (137)
Q Consensus 29 Iq~I~lCpe-----Sr~L~VaG~sG~Vil~~f~ 56 (137)
|+-|+|-|. ||+++++|.+| +++|+=+
T Consensus 115 iksial~Pd~~~~~sk~fv~GG~ag-lvL~er~ 146 (846)
T KOG2066|consen 115 IKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN 146 (846)
T ss_pred ceeEEeccchhhhhhhheeecCcce-EEEehhh
Confidence 778999998 99999999999 9998744
No 52
>PLN03216 actin depolymerizing factor; Provisional
Probab=32.78 E-value=35 Score=25.54 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=5.5
Q ss_pred EEEEEeecCC
Q psy6173 29 VKKICFCPVT 38 (137)
Q Consensus 29 Iq~I~lCpeS 38 (137)
+-.|+|||++
T Consensus 87 lvFI~w~Pd~ 96 (141)
T PLN03216 87 IFFIAWSPEA 96 (141)
T ss_pred EEEEEECCCC
Confidence 3445666664
No 53
>KOG0318|consensus
Probab=32.49 E-value=1.2e+02 Score=28.40 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=41.0
Q ss_pred CCccceEEEEEeecCCCeEEEecccceEEEEEecCCCcceeeEeEEEeee
Q psy6173 23 DDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNI 72 (137)
Q Consensus 23 DDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e~~~~ei~~l~v~l 72 (137)
.|.|-+|.-|++-|.--+|+++-+++-|++|.....|..+..+.+-..+|
T Consensus 484 ~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI 533 (603)
T KOG0318|consen 484 LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKI 533 (603)
T ss_pred ecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeE
Confidence 46678999999999999999999999999999997774556665444443
No 54
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=32.35 E-value=52 Score=27.07 Aligned_cols=31 Identities=35% Similarity=0.575 Sum_probs=24.8
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
...-|+=||.||.|+||- ..-++||+|.-+-
T Consensus 136 ~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 136 PPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred CCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 346688999999999975 4578899997665
No 55
>KOG1009|consensus
Probab=32.34 E-value=70 Score=28.96 Aligned_cols=31 Identities=32% Similarity=0.373 Sum_probs=28.9
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
-||.-|.|-|+.-.|+.||-+|.|++|+-.+
T Consensus 66 ~aVN~vRf~p~gelLASg~D~g~v~lWk~~~ 96 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGDGGEVFLWKQGD 96 (434)
T ss_pred ceeEEEEEcCCcCeeeecCCCceEEEEEecC
Confidence 4899999999999999999999999999983
No 56
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=31.79 E-value=1.1e+02 Score=23.18 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=23.1
Q ss_pred EEEeecCCCeEEEec-ccceEEEEEecCCC
Q psy6173 31 KICFCPVTGTLLIAG-TAGHVILAKLSTKT 59 (137)
Q Consensus 31 ~I~lCpeSr~L~VaG-~sG~Vil~~f~~~e 59 (137)
.+.|.|.++.|++++ .+|.|.+|.....+
T Consensus 161 ~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence 467888888887776 48999999987665
No 57
>PRK14520 rpsP 30S ribosomal protein S16; Provisional
Probab=31.73 E-value=34 Score=26.90 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=14.8
Q ss_pred CCCCCCCcccccccCCCC
Q psy6173 5 GPRSESLNLNVGCFDPYS 22 (137)
Q Consensus 5 ~~~~~~PfrkvG~~DP~s 22 (137)
-+|+.++.-+||.|||-.
T Consensus 27 ~~RDGk~IE~lG~YnP~~ 44 (155)
T PRK14520 27 TKRDGRAIEEIGRYHPKE 44 (155)
T ss_pred CCCCCCceeeeeccCCCC
Confidence 467888888999999964
No 58
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=31.65 E-value=2e+02 Score=23.83 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=23.2
Q ss_pred EEEEeecCCCeEEEec-ccceEEEEEecCC
Q psy6173 30 KKICFCPVTGTLLIAG-TAGHVILAKLSTK 58 (137)
Q Consensus 30 q~I~lCpeSr~L~VaG-~sG~Vil~~f~~~ 58 (137)
..|.+.|..+.|+||+ .++.|.+|+.+.+
T Consensus 295 r~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 295 RHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred cEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 5677899999999998 5689999998643
No 59
>KOG0645|consensus
Probab=31.65 E-value=1.4e+02 Score=25.94 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=31.1
Q ss_pred ccceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 25 PRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 25 prlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
..=+|..|+|-|..+.||.|--.+.|.||+=.+.|
T Consensus 60 hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e 94 (312)
T KOG0645|consen 60 HKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE 94 (312)
T ss_pred chheeeeeeecCCCcEEEEeeccceEEEeecCCCc
Confidence 34689999999999999999999999999877665
No 60
>KOG0322|consensus
Probab=31.38 E-value=40 Score=29.22 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=26.3
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEe
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKL 55 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f 55 (137)
+|+-++|-|.++.++.|+-.++|.+|++
T Consensus 295 gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 6788999999999999999999999986
No 61
>PRK14522 rpsP 30S ribosomal protein S16; Provisional
Probab=31.21 E-value=31 Score=25.92 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=14.8
Q ss_pred CCCCCCCcccccccCCCC
Q psy6173 5 GPRSESLNLNVGCFDPYS 22 (137)
Q Consensus 5 ~~~~~~PfrkvG~~DP~s 22 (137)
-+++.++.-.+|.|||..
T Consensus 27 ~~RDGk~IE~lG~YdP~~ 44 (116)
T PRK14522 27 SPRDGKYIELLGWYDPHS 44 (116)
T ss_pred CCCCCCcceeeeccCCCC
Confidence 367788889999999964
No 62
>KOG0263|consensus
Probab=30.54 E-value=63 Score=31.02 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=28.7
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-|.-+.+||-.|+|+.|+.+|-|.+|++....
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred ceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence 37888999999999999999999999997744
No 63
>CHL00005 rps16 ribosomal protein S16
Probab=30.43 E-value=26 Score=24.64 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=14.9
Q ss_pred CCCCCCCcccccccCCCC
Q psy6173 5 GPRSESLNLNVGCFDPYS 22 (137)
Q Consensus 5 ~~~~~~PfrkvG~~DP~s 22 (137)
-+|+.++.-++|.|||-.
T Consensus 26 ~~RdGk~iE~lG~YnP~~ 43 (82)
T CHL00005 26 SRREGRDLEKVGFYDPIK 43 (82)
T ss_pred CCCCCcceeEeeeccCCC
Confidence 367788888999999964
No 64
>KOG2919|consensus
Probab=30.06 E-value=53 Score=29.24 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=25.3
Q ss_pred EEEE--eecCCCeEEEecccceEEEEEecCCC
Q psy6173 30 KKIC--FCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 30 q~I~--lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
|.|. +.|.++.|+.+++.|-|-+|++.+-.
T Consensus 299 QRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 299 QRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred ceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 5565 56889999999999999999998843
No 65
>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification.; PDB: 2VGN_A 2VGM_A 3J16_A 3IZQ 3AGK_A 3AGJ_B 3OBW_A 3E1Y_D 1DT9_A 2LLX_A ....
Probab=29.10 E-value=64 Score=23.68 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=18.8
Q ss_pred cceEEEEEeecCCCeEEEecc
Q psy6173 26 RLAVKKICFCPVTGTLLIAGT 46 (137)
Q Consensus 26 rlAIq~I~lCpeSr~L~VaG~ 46 (137)
+.+|++|.|-|+++.|-+.|.
T Consensus 67 ~i~ve~v~~~~~~~~Lri~G~ 87 (132)
T PF03463_consen 67 TIKVEKVEFDPENGLLRISGK 87 (132)
T ss_dssp EEEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEeEecCCCCEEEEEeE
Confidence 468999999999999999985
No 66
>KOG0263|consensus
Probab=28.78 E-value=84 Score=30.19 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=29.5
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|--|+||.++..|+++|..-+|.+|.|.+.-
T Consensus 621 ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 621 TIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 67789999999999999999999999998766
No 67
>KOG1240|consensus
Probab=28.17 E-value=85 Score=32.28 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=29.2
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-+.++.+|+.+.+++||+..|+|.+++.+-.+
T Consensus 1100 r~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~ 1131 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYN 1131 (1431)
T ss_pred ceEEEEeccCCCeEEEEcCCCeEEEEEccccc
Confidence 58899999999999999999999999998733
No 68
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=28.07 E-value=1.2e+02 Score=29.61 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=33.3
Q ss_pred ccccccCCCC-CCccceEEEEEeecCCCeEEEecccceEEEEEecCC
Q psy6173 13 LNVGCFDPYS-DDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTK 58 (137)
Q Consensus 13 rkvG~~DP~s-DDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~ 58 (137)
+.+-.||.-. +++.=-|--+.+++++..||++-.+|-|++++....
T Consensus 61 ~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~ 107 (928)
T PF04762_consen 61 EVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILVREDPD 107 (928)
T ss_pred eEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEEEccCC
Confidence 4445565220 233346888899999999999999999999976543
No 69
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=27.98 E-value=88 Score=25.27 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=21.5
Q ss_pred EEeecCCCeEEEecc-cceEEEEEecCCC
Q psy6173 32 ICFCPVTGTLLIAGT-AGHVILAKLSTKT 59 (137)
Q Consensus 32 I~lCpeSr~L~VaG~-sG~Vil~~f~~~e 59 (137)
+.|-|..+.|.||+. ++.|.+|+++.+.
T Consensus 279 ~~~~~dg~~l~va~~~~~~v~v~~~~~~~ 307 (330)
T PRK11028 279 FNIDHSGKYLIAAGQKSHHISVYEIDGET 307 (330)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEcCCC
Confidence 456778888888887 7889998887543
No 70
>KOG0973|consensus
Probab=27.91 E-value=62 Score=32.02 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=30.4
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.+|--++|||....|.+.--.|.|.+++|.+.|
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 367889999999999999999999999998877
No 71
>KOG1036|consensus
Probab=27.25 E-value=85 Score=27.41 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=30.0
Q ss_pred cceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 26 RLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 26 rlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.=+|..|.|-|.+..|+|+-=+|.+.+|++...+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~ 46 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS 46 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh
Confidence 3489999999999999999999999999998765
No 72
>KOG0284|consensus
Probab=27.20 E-value=77 Score=28.86 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=25.8
Q ss_pred cceEEEEEeecCCCeEEEecccceEEEEEe
Q psy6173 26 RLAVKKICFCPVTGTLLIAGTAGHVILAKL 55 (137)
Q Consensus 26 rlAIq~I~lCpeSr~L~VaG~sG~Vil~~f 55 (137)
+..|-.|.|-||.|.|++|-.+|-+.||..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg 125 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNG 125 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecC
Confidence 455778889999999999999999988764
No 73
>KOG1274|consensus
Probab=26.99 E-value=73 Score=31.46 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=27.7
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.+.+.+|=|++|+|++.++.+.|.+|+-+.-|
T Consensus 190 i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 190 ICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred eeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence 45678999999999999999999999866555
No 74
>KOG0310|consensus
Probab=26.84 E-value=74 Score=29.23 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=25.1
Q ss_pred EEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 29 VKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 29 Iq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
+--+.||...+.||.++.+|||-||..+.
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 44567999999999999999999999654
No 75
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=26.73 E-value=43 Score=23.40 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=12.1
Q ss_pred cccccCCCCcceEEEE
Q psy6173 103 LLKSVSPGFQPTCLVQ 118 (137)
Q Consensus 103 ~~~~~ppGfQ~~lv~q 118 (137)
+....-+||+|.|++.
T Consensus 71 ~~~~~~~Gy~P~L~~~ 86 (94)
T PF07319_consen 71 GCPNIAKGYQPKLVVN 86 (94)
T ss_dssp TS--SSTTEEEEEEEE
T ss_pred CCCCcCCCCCCeEEee
Confidence 5667889999999976
No 76
>KOG1539|consensus
Probab=26.41 E-value=1.2e+02 Score=29.89 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=30.6
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-+|.-+++.--.++++.||..|++..|.|++..
T Consensus 494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred CceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence 379999999999999999999999999999877
No 77
>KOG0266|consensus
Probab=26.25 E-value=1.6e+02 Score=25.73 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=30.1
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.+.-+.|+|+...|+++.-.+++-+|++++..
T Consensus 336 ~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 336 PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred ceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 68999999999999999999999999999776
No 78
>KOG3419|consensus
Probab=26.24 E-value=47 Score=24.80 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.4
Q ss_pred CCCCCCcccccccCCCC
Q psy6173 6 PRSESLNLNVGCFDPYS 22 (137)
Q Consensus 6 ~~~~~PfrkvG~~DP~s 22 (137)
.+..+|.-++|.|||--
T Consensus 28 ~rdgk~iE~lG~ydPlp 44 (112)
T KOG3419|consen 28 RRDGKPIEQLGTYDPLP 44 (112)
T ss_pred cccCCchhheecccCCC
Confidence 56778899999999974
No 79
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=25.37 E-value=1.1e+02 Score=26.81 Aligned_cols=30 Identities=10% Similarity=0.217 Sum_probs=24.9
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
.-+.++-+|.+|.++++-..|+..+|.++.
T Consensus 45 ~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~ 74 (504)
T PF10433_consen 45 PGQYLAVDPSGRCIAVSAYEGNFLVYPLNR 74 (504)
T ss_dssp T--EEEE-TTSSEEEEEEBTTEEEEEE-SS
T ss_pred CCcEEEECCcCCEEEEEecCCeEEEEEecc
Confidence 357899999999999999999999999999
No 80
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.13 E-value=70 Score=23.29 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=17.1
Q ss_pred eEEEEEeecCCCeEEEec
Q psy6173 28 AVKKICFCPVTGTLLIAG 45 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG 45 (137)
||++|..=||.+.|+|-+
T Consensus 41 gis~ieik~E~kkL~v~t 58 (96)
T COG4004 41 GISRIEIKPENKKLLVNT 58 (96)
T ss_pred CceEEEEecccceEEEec
Confidence 899999999999999988
No 81
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=24.65 E-value=1.8e+02 Score=28.59 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=38.0
Q ss_pred cccccccCCCCCCccceEEEEEeecCCCeEEEecccceEEEEEecCCCcceeeEeEEEeeeeeC
Q psy6173 12 NLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVSD 75 (137)
Q Consensus 12 frkvG~~DP~sDDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e~~~~ei~~l~v~l~~d 75 (137)
.--||.+|- .|+-++|.|.--+|+++-..|+|+++.=.-+. +.|++|..+
T Consensus 113 ~E~VG~vd~-------GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~-------i~E~~l~~~ 162 (928)
T PF04762_consen 113 IEIVGSVDS-------GILAASWSPDEELLALVTGEGNLLLMTRDFDP-------ISEVPLDSD 162 (928)
T ss_pred eEEEEEEcC-------cEEEEEECCCcCEEEEEeCCCEEEEEeccceE-------EEEeecCcc
Confidence 344777775 89999999999999999999999998643333 445555543
No 82
>KOG0647|consensus
Probab=24.45 E-value=93 Score=27.37 Aligned_cols=30 Identities=40% Similarity=0.588 Sum_probs=26.0
Q ss_pred ccceEEEEEeecCCCeEEEecccceEEEEE
Q psy6173 25 PRLAVKKICFCPVTGTLLIAGTAGHVILAK 54 (137)
Q Consensus 25 prlAIq~I~lCpeSr~L~VaG~sG~Vil~~ 54 (137)
.=+||--|+|=|.-|+|+.||..|....|.
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEec
Confidence 348999999999999999999999765553
No 83
>PF11532 HnRNP_M: Heterogeneous nuclear ribonucleoprotein M; InterPro: IPR024666 Heterogeneous nuclear ribonucleoproteins (hnRNPs) bind directly to nascent RNA polymerase II transcripts and play an important role in both transcript-specific packaging and alternative splicing of pre-mRNAs []. hnRNP M proteins are an abundant group of hnRNPs that have been shown to bind avidly to poly(G) and poly(U) RNA homopolymers []. hnRNP M family members are able to induce exon skipping and promote exon inclusion, suggesting that the proteins may broadly contribute to the fidelity of splice site recognition and alternative splicing regulation []. This entry represents the N-terminal PY nuclear localisation signal of heterogeneous nuclear ribonucleoprotein M [].; PDB: 2OT8_C.
Probab=24.25 E-value=28 Score=20.26 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=1.9
Q ss_pred CCCCCcccc-cccCCCC
Q psy6173 7 RSESLNLNV-GCFDPYS 22 (137)
Q Consensus 7 ~~~~Pfrkv-G~~DP~s 22 (137)
|-|+|+++. |.|+||+
T Consensus 9 rkEk~~Krgg~rfEPY~ 25 (30)
T PF11532_consen 9 RKEKPQKRGGNRFEPYA 25 (30)
T ss_dssp --------------SS-
T ss_pred hhhcccccCCccccccc
Confidence 457777775 6899995
No 84
>KOG0293|consensus
Probab=23.91 E-value=83 Score=28.88 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=30.2
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
+.++-.+|||.+-.+++++..++++.+.++-.+
T Consensus 313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~ 345 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI 345 (519)
T ss_pred CCcceeEEccCCceeEecCCCCcEEEecCCcch
Confidence 678889999999999999999999999997666
No 85
>KOG1086|consensus
Probab=23.88 E-value=1.4e+02 Score=27.71 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=45.8
Q ss_pred cCCCe-EEEecccceEEEEEecCCCcce--eeEeEEEeeeeeCCCCccccCccccccccCCCCCCCCccccccc--cCCC
Q psy6173 36 PVTGT-LLIAGTAGHVILAKLSTKTSTD--VTVKISTMNIVSDRDSFVWKGHARLGVKHTDSKDKEPSKALLKS--VSPG 110 (137)
Q Consensus 36 peSr~-L~VaG~sG~Vil~~f~~~e~~~--~ei~~l~v~l~~d~e~~~w~g~~~L~vr~~~~~~~~~vk~~~~~--~ppG 110 (137)
|.|+. +.|=-..|.=|+|.|.+.. .. .+|.++.+-+++...-.+|.=.-++.+-+ +.-||-.|.+ .-+-
T Consensus 464 Psn~~Pv~vyd~~GfRILlhfaq~~-~pg~sdV~v~vlsmlntap~pikdI~lq~avpk-----~mkvkLQp~sgteL~~ 537 (594)
T KOG1086|consen 464 PSNRLPVTVYDSNGFRILLHFAQSD-MPGRSDVLVVVLSMLNTAPQPIKDIVLQLAVPK-----SMKVKLQPPSGTELPA 537 (594)
T ss_pred cCCCCCeEEEccCCcEEEeeeccCC-CCCCCceEEEEEEeecCCCcchhhheeeecccc-----ceeeeccCCCcccCCC
Confidence 55554 4455677999999999887 55 57777777777644433443333333311 0001111111 3344
Q ss_pred CcceEEEEeCCCcceeEE
Q psy6173 111 FQPTCLVQLHPPAAVTSL 128 (137)
Q Consensus 111 fQ~~lv~ql~PP~~ITsL 128 (137)
|-| ++||++||-+
T Consensus 538 Fsp-----i~ppaaitqv 550 (594)
T KOG1086|consen 538 FSP-----IMPPAAITQV 550 (594)
T ss_pred CCC-----CCChHHHHHH
Confidence 555 6799998854
No 86
>KOG2111|consensus
Probab=23.87 E-value=1.6e+02 Score=26.06 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=31.2
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|.-|+|-|.+-.|||+--.|.|=+|.+.+.+
T Consensus 227 A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 227 ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred heEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 689999999999999999999999999998866
No 87
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.67 E-value=87 Score=27.59 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=24.3
Q ss_pred cccccccCCCCCCccceEEEEEeecCCCeEEEecc
Q psy6173 12 NLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGT 46 (137)
Q Consensus 12 frkvG~~DP~sDDprlAIq~I~lCpeSr~L~VaG~ 46 (137)
|.+||.|+=|.=-| +.+.|-+..|+|+||+-
T Consensus 151 fqrvgE~~t~GiGp----Hev~lm~DGrtlvvanG 181 (366)
T COG3490 151 FQRVGEFSTHGIGP----HEVTLMADGRTLVVANG 181 (366)
T ss_pred cceecccccCCcCc----ceeEEecCCcEEEEeCC
Confidence 56677777765444 78899999999999974
No 88
>KOG0650|consensus
Probab=23.46 E-value=88 Score=29.91 Aligned_cols=45 Identities=27% Similarity=0.269 Sum_probs=36.9
Q ss_pred CCCCCCCCcccccccCCCCCCccceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 4 SGPRSESLNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 4 ~~~~~~~PfrkvG~~DP~sDDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
|--++..||||.+- -||.+.|=|-.-+|.|| +.-+|.+|.|.+++
T Consensus 554 SK~~sQ~PF~kskG----------~vq~v~FHPs~p~lfVa-Tq~~vRiYdL~kqe 598 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKG----------LVQRVKFHPSKPYLFVA-TQRSVRIYDLSKQE 598 (733)
T ss_pred ccccccCchhhcCC----------ceeEEEecCCCceEEEE-eccceEEEehhHHH
Confidence 44567788888653 58889999999999998 56799999999988
No 89
>KOG1445|consensus
Probab=23.29 E-value=67 Score=31.19 Aligned_cols=27 Identities=30% Similarity=0.639 Sum_probs=0.0
Q ss_pred ccCCCCCCccceEEEEEeecCCCeEEEecccceEEEEEecCC
Q psy6173 17 CFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTK 58 (137)
Q Consensus 17 ~~DP~sDDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~ 58 (137)
.||||+|.- |+||+-.|+|-||++...
T Consensus 634 ~WdPFD~~r---------------LAVa~ddg~i~lWr~~a~ 660 (1012)
T KOG1445|consen 634 HWDPFDDER---------------LAVATDDGQINLWRLTAN 660 (1012)
T ss_pred ccCCCChHH---------------eeecccCceEEEEEeccC
No 90
>KOG2055|consensus
Probab=22.89 E-value=1.2e+02 Score=28.06 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=29.6
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
=+|+-|.|=|..-.|+|||-.|.+-+|...-.-
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~ 246 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV 246 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCcc
Confidence 479999999999999999999999999996443
No 91
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=22.49 E-value=47 Score=27.32 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=10.6
Q ss_pred CcceeEEEeecccc
Q psy6173 122 PAAVTSLVLHTEWG 135 (137)
Q Consensus 122 P~~ITsLal~SsyG 135 (137)
|...-+|||||.||
T Consensus 91 pd~~lsLaINS~~g 104 (222)
T PF02611_consen 91 PDDDLSLAINSQYG 104 (222)
T ss_dssp -GGGEEEEEB-GGG
T ss_pred CccceEEEecCccC
Confidence 56777999999998
No 92
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=22.39 E-value=1.1e+02 Score=25.05 Aligned_cols=25 Identities=16% Similarity=0.474 Sum_probs=21.1
Q ss_pred eecCCCeEEEecccceEEEEEecCCC
Q psy6173 34 FCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 34 lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
+|+..++ ++++.+..|.+|++...+
T Consensus 94 i~~~~~~-lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 94 ICSFNGR-LVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEETTE-EEEEETTEEEEEEEETTS
T ss_pred hhhhCCE-EEEeecCEEEEEEccCcc
Confidence 6666888 778889999999999877
No 93
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=22.26 E-value=65 Score=23.81 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=12.1
Q ss_pred cccceEEEEEecCCC
Q psy6173 45 GTAGHVILAKLSTKT 59 (137)
Q Consensus 45 G~sG~Vil~~f~~~e 59 (137)
.+|.||+||+|+...
T Consensus 24 ~~a~~v~vY~f~~~~ 38 (122)
T PF06058_consen 24 DTASHVVVYKFDHET 38 (122)
T ss_dssp EEEEEEEEEEEETTT
T ss_pred hhCCeEEEEeecCCC
Confidence 357899999998665
No 94
>KOG0268|consensus
Probab=22.26 E-value=1.4e+02 Score=27.00 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=33.8
Q ss_pred ccccCCCCCCccceEEEEEeec-----------CCCeEEEecccceEEEEEecCCC
Q psy6173 15 VGCFDPYSDDPRLAVKKICFCP-----------VTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 15 vG~~DP~sDDprlAIq~I~lCp-----------eSr~L~VaG~sG~Vil~~f~~~e 59 (137)
|-.||++-|+| |+.+.|=. |+-+|+++|..+-++||.++...
T Consensus 169 i~IWD~~R~~P---v~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~ 221 (433)
T KOG0268|consen 169 IDIWDEQRDNP---VSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS 221 (433)
T ss_pred eeecccccCCc---cceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC
Confidence 44899998998 66666532 57889999999999999998655
No 95
>KOG1009|consensus
Probab=22.15 E-value=2.4e+02 Score=25.61 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=44.3
Q ss_pred CcccccccCCCCCCccceEEEEEeecCCCeEEEecccceEEEEEecCCCcce---eeEeEEEeeeee
Q psy6173 11 LNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTD---VTVKISTMNIVS 74 (137)
Q Consensus 11 PfrkvG~~DP~sDDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e~~~---~ei~~l~v~l~~ 74 (137)
||--|+..+ | .||+-|+|-+..-.|+|.-+.|+-.+-.|.+.| -- .++.++.+++-.
T Consensus 333 P~~~v~nih-y-----~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e-lg~~~~~~sv~~~~~~~ 392 (434)
T KOG1009|consen 333 PLAVVDNIH-Y-----SAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE-LGIRLKEISVLSKRLDS 392 (434)
T ss_pred ceEEEeeee-e-----eeecceeecCCCcEEEEeccCCceEEEEEcchh-ccceecccccccccCCC
Confidence 666666666 5 689999999999999999999999999999888 32 344455555544
No 96
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=22.06 E-value=1.5e+02 Score=25.44 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=58.6
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCCcceeeEeEEEeeeeeCCCCccccCccccccccCCCCCCCC--------
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVSDRDSFVWKGHARLGVKHTDSKDKEP-------- 99 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e~~~~ei~~l~v~l~~d~e~~~w~g~~~L~vr~~~~~~~~~-------- 99 (137)
==++++|-|....|+.|-..|+|-+|.+...+ .-.|.. .+...-|-..-+ -|..-+..+.+. +-+..
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf~I~p-~~~~~~d~~~Ai-agl~Fl~~~~s~-~ws~ELlvi~Y~G 119 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LFVIPP-AMSFPGDLSDAI-AGLIFLEYKKSA-QWSYELLVINYRG 119 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccce--eEEcCc-ccccCCccccce-eeeEeecccccc-ccceeEEEEeccc
Confidence 45789999999999999999999999887655 111110 000000100000 000111111100 00000
Q ss_pred -cccccc--ccCCCCcceEEEEeC--CCcceeEEEeeccccCC
Q psy6173 100 -SKALLK--SVSPGFQPTCLVQLH--PPAAVTSLVLHTEWGEY 137 (137)
Q Consensus 100 -vk~~~~--~~ppGfQ~~lv~ql~--PP~~ITsLal~SsyGLv 137 (137)
.|+=-+ ..--|||-.+.+++. =|..|++...+....|+
T Consensus 120 ~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LL 162 (282)
T PF15492_consen 120 QLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLL 162 (282)
T ss_pred eeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEE
Confidence 112111 123589999999884 68999999999988774
No 97
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=22.04 E-value=2.1e+02 Score=23.05 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=24.2
Q ss_pred EEEeecCCCeEEEecc-cceEEEEEecCCC
Q psy6173 31 KICFCPVTGTLLIAGT-AGHVILAKLSTKT 59 (137)
Q Consensus 31 ~I~lCpeSr~L~VaG~-sG~Vil~~f~~~e 59 (137)
.|.|.|..+.|.|++. ++.|.+|+.+..+
T Consensus 232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 232 DIHITPDGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred eEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence 5888999999999976 6889999997554
No 98
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=21.70 E-value=2.9e+02 Score=22.88 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=26.1
Q ss_pred EEEEeecCCCeEEEecc-cceEEEEEecCCC
Q psy6173 30 KKICFCPVTGTLLIAGT-AGHVILAKLSTKT 59 (137)
Q Consensus 30 q~I~lCpeSr~L~VaG~-sG~Vil~~f~~~e 59 (137)
..|++.|..+.|.||.- +|.|.+|++++..
T Consensus 90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDG 120 (345)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred EEEEEecCCCEEEEEEccCCeEEEEEccCCc
Confidence 45788899999999984 8999999999865
No 99
>KOG0310|consensus
Probab=21.20 E-value=2.8e+02 Score=25.63 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=36.8
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCCcceeeEe----EEEeeeeeCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVK----ISTMNIVSDRD 77 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e~~~~ei~----~l~v~l~~d~e 77 (137)
.|+-+.|-.+|..|..||-.|||=+|+..+-- ..+.+. ++.+.+..|.+
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K-vv~s~~~~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK-VVHSWKYPGPVLSIAVSPDDQ 292 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEccceE-EEEeeecccceeeEEecCCCc
Confidence 56667777778999999999999999976666 555554 56666666543
No 100
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=21.17 E-value=1.3e+02 Score=21.21 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=24.8
Q ss_pred ccceEEEEEeecCCCeEEEecccceEEEEE
Q psy6173 25 PRLAVKKICFCPVTGTLLIAGTAGHVILAK 54 (137)
Q Consensus 25 prlAIq~I~lCpeSr~L~VaG~sG~Vil~~ 54 (137)
+.-.|..+.|||.--.|+|+-..|.--+--
T Consensus 8 ~~~~v~~~~F~PfEDvLgvGh~~G~sSiiV 37 (80)
T PF08149_consen 8 PGSPVESLRFCPFEDVLGVGHSKGFSSIIV 37 (80)
T ss_pred CCCeeeeeEEechHHeeEeeccCceeEEec
Confidence 346899999999999999999998655543
No 101
>KOG2048|consensus
Probab=21.04 E-value=1.7e+02 Score=28.06 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=36.4
Q ss_pred cccccccCCCCCCccceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 12 NLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 12 frkvG~~DP~sDDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
|.+.=.+-|=.+-| +|.+|.--|....+||+++.|+|-+|++...+
T Consensus 463 ~kel~~~~~~~~~~--~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 463 FKELKSIQSQAKCP--SISRLVVSSDGNYIAAISTRGQIFVYNLETLE 508 (691)
T ss_pred hhhhhccccccCCC--cceeEEEcCCCCEEEEEeccceEEEEEcccce
Confidence 33344444444555 79999999999999999999999999998777
No 102
>PRK14521 rpsP 30S ribosomal protein S16; Provisional
Probab=20.97 E-value=68 Score=25.91 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=14.3
Q ss_pred CCCCCCCcccccccCCC
Q psy6173 5 GPRSESLNLNVGCFDPY 21 (137)
Q Consensus 5 ~~~~~~PfrkvG~~DP~ 21 (137)
-+|+.++.-+||+|||-
T Consensus 27 ~~RDGk~IE~lG~YnP~ 43 (186)
T PRK14521 27 APRDGKFIEKIGTYNPN 43 (186)
T ss_pred CCCCCCceeeeeecCCC
Confidence 46788888899999995
No 103
>KOG0290|consensus
Probab=20.64 E-value=1.1e+02 Score=26.98 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=0.0
Q ss_pred eEEEEEeecCCC-eEEEecccceEEEEEec
Q psy6173 28 AVKKICFCPVTG-TLLIAGTAGHVILAKLS 56 (137)
Q Consensus 28 AIq~I~lCpeSr-~L~VaG~sG~Vil~~f~ 56 (137)
.|.-|+|-|.|+ .+|.||-.-|+++|++.
T Consensus 289 ~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 289 SVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred cccceEecCCCCceeeecCCcceEEEEecc
No 104
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=20.48 E-value=1.5e+02 Score=27.73 Aligned_cols=33 Identities=9% Similarity=0.220 Sum_probs=29.4
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
+....|+|=|.+..++|++..|++-+|+..=..
T Consensus 300 ~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 300 FIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 778889999999999999999999999875444
No 105
>KOG0645|consensus
Probab=20.26 E-value=97 Score=26.88 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=25.4
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
++--|.|| ++.+|.||-.+-+.||+-++..
T Consensus 235 ~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~ 264 (312)
T KOG0645|consen 235 ALYDVPWD--NGVIASGGGDDAIRLFKESDSP 264 (312)
T ss_pred ceEeeeec--ccceEeccCCCEEEEEEecCCC
Confidence 34458899 9999999999999999988754
No 106
>PF13889 Chromosome_seg: Chromosome segregation during meiosis
Probab=20.24 E-value=91 Score=20.54 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=14.3
Q ss_pred cceEEEEEeecCCCeEEE
Q psy6173 26 RLAVKKICFCPVTGTLLI 43 (137)
Q Consensus 26 rlAIq~I~lCpeSr~L~V 43 (137)
|+||+.=+.||.+|++-.
T Consensus 4 RYliHLrf~~~~~gr~YL 21 (56)
T PF13889_consen 4 RYLIHLRFCCPRSGRFYL 21 (56)
T ss_pred EEEEEEEEecCCCCcEEE
Confidence 789999999998766543
Done!