Query psy6173
Match_columns 137
No_of_seqs 103 out of 119
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 19:34:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oaj_A Protein SNI1; WD40 repe 97.2 0.00047 1.6E-08 62.5 5.8 91 26-135 488-587 (902)
2 3f3f_A Nucleoporin SEH1; struc 91.2 0.49 1.7E-05 34.5 6.0 33 27-59 307-339 (351)
3 4aow_A Guanine nucleotide-bind 90.9 0.58 2E-05 34.7 6.3 32 28-59 40-72 (340)
4 3dw8_B Serine/threonine-protei 89.6 0.62 2.1E-05 36.2 5.6 33 27-59 29-61 (447)
5 3f3f_A Nucleoporin SEH1; struc 89.4 0.6 2.1E-05 34.0 5.1 33 27-59 12-44 (351)
6 3zwl_B Eukaryotic translation 88.9 0.45 1.5E-05 35.4 4.2 33 27-59 316-348 (369)
7 3k26_A Polycomb protein EED; W 88.7 0.53 1.8E-05 35.1 4.5 31 27-57 336-366 (366)
8 4aow_A Guanine nucleotide-bind 87.9 0.62 2.1E-05 34.5 4.4 31 27-57 307-337 (340)
9 4ggc_A P55CDC, cell division c 87.3 0.65 2.2E-05 34.1 4.2 31 28-58 286-316 (318)
10 3mmy_A MRNA export factor; mRN 86.4 0.71 2.4E-05 34.3 4.0 32 28-59 275-306 (368)
11 1yfq_A Cell cycle arrest prote 86.3 0.98 3.4E-05 33.6 4.7 33 27-59 12-44 (342)
12 4a11_B DNA excision repair pro 86.2 0.94 3.2E-05 34.3 4.6 33 27-59 44-77 (408)
13 3i2n_A WD repeat-containing pr 85.9 5 0.00017 29.6 8.5 33 27-59 260-293 (357)
14 4ggc_A P55CDC, cell division c 85.9 1.7 5.9E-05 31.7 5.8 33 27-59 68-100 (318)
15 3zwl_B Eukaryotic translation 84.9 1.5 5.1E-05 32.5 5.2 33 27-59 33-65 (369)
16 3mmy_A MRNA export factor; mRN 84.7 1.2 4.1E-05 33.0 4.5 33 27-59 87-119 (368)
17 4ery_A WD repeat-containing pr 84.6 1.9 6.5E-05 32.1 5.6 33 27-59 66-98 (312)
18 4a11_B DNA excision repair pro 84.4 1.3 4.4E-05 33.5 4.7 33 27-59 335-367 (408)
19 3jrp_A Fusion protein of prote 83.2 1.4 4.7E-05 33.0 4.3 31 27-57 12-42 (379)
20 1k8k_C P40, ARP2/3 complex 41 82.3 1.6 5.6E-05 32.6 4.5 33 27-59 53-85 (372)
21 1r5m_A SIR4-interacting protei 81.9 1.3 4.4E-05 33.6 3.8 29 28-56 396-424 (425)
22 3odt_A Protein DOA1; ubiquitin 81.8 2.5 8.5E-05 30.7 5.2 32 27-59 19-50 (313)
23 3fm0_A Protein CIAO1; WDR39,SG 81.7 3.4 0.00012 31.8 6.2 33 27-59 106-138 (345)
24 1gxr_A ESG1, transducin-like e 81.5 2.2 7.4E-05 31.3 4.8 33 27-59 266-298 (337)
25 1sq9_A Antiviral protein SKI8; 81.4 2.6 8.9E-05 32.0 5.4 33 27-59 292-324 (397)
26 1gxr_A ESG1, transducin-like e 81.1 2.9 9.9E-05 30.6 5.4 33 27-59 184-216 (337)
27 1got_B GT-beta; complex (GTP-b 80.8 3.1 0.0001 31.9 5.6 32 28-59 57-88 (340)
28 3vl1_A 26S proteasome regulato 80.7 3.1 0.00011 31.9 5.7 33 27-59 140-172 (420)
29 1yfq_A Cell cycle arrest prote 80.4 2 6.8E-05 31.8 4.3 33 27-59 57-91 (342)
30 3jrp_A Fusion protein of prote 80.4 3 0.0001 31.1 5.3 33 27-59 257-289 (379)
31 4g56_B MGC81050 protein; prote 80.3 1.9 6.4E-05 33.7 4.3 32 28-59 313-345 (357)
32 2ynn_A Coatomer subunit beta'; 80.2 3 0.0001 31.4 5.4 32 28-59 15-46 (304)
33 3k26_A Polycomb protein EED; W 79.9 2.2 7.6E-05 31.6 4.4 33 27-59 162-194 (366)
34 1k8k_C P40, ARP2/3 complex 41 79.7 1.8 6E-05 32.5 3.8 32 28-59 10-41 (372)
35 4gga_A P55CDC, cell division c 79.4 2.4 8.2E-05 33.4 4.7 33 27-59 148-180 (420)
36 4ery_A WD repeat-containing pr 79.3 3.2 0.00011 30.8 5.1 32 28-59 25-56 (312)
37 3odt_A Protein DOA1; ubiquitin 78.9 3.4 0.00012 29.9 5.1 33 27-59 60-92 (313)
38 3ei3_B DNA damage-binding prot 78.5 3.5 0.00012 31.5 5.3 33 27-59 74-107 (383)
39 2pbi_B Guanine nucleotide-bind 78.5 3.9 0.00013 31.7 5.6 33 27-59 65-97 (354)
40 4aez_A CDC20, WD repeat-contai 78.1 3.3 0.00011 32.3 5.1 33 27-59 135-167 (401)
41 2aq5_A Coronin-1A; WD40 repeat 77.7 3.1 0.0001 32.3 4.8 32 27-58 82-114 (402)
42 3iz6_a 40S ribosomal protein R 77.6 3.6 0.00012 32.1 5.2 33 27-59 67-99 (380)
43 3frx_A Guanine nucleotide-bind 77.6 4 0.00014 31.0 5.3 33 27-59 197-229 (319)
44 1r5m_A SIR4-interacting protei 77.5 3.4 0.00011 31.2 4.9 33 27-59 150-182 (425)
45 3vl1_A 26S proteasome regulato 77.0 3.7 0.00012 31.6 5.0 33 27-59 182-214 (420)
46 3i2n_A WD repeat-containing pr 76.9 3.1 0.00011 30.8 4.4 33 27-59 322-355 (357)
47 2aq5_A Coronin-1A; WD40 repeat 76.7 3.6 0.00012 31.9 5.0 33 27-59 177-209 (402)
48 2pm9_A Protein WEB1, protein t 76.6 3.9 0.00013 31.2 5.0 33 27-59 263-296 (416)
49 1sq9_A Antiviral protein SKI8; 76.6 3.6 0.00012 31.2 4.8 31 27-57 355-395 (397)
50 3ow8_A WD repeat-containing pr 76.4 3.7 0.00012 31.5 4.9 32 28-59 250-281 (321)
51 3fm0_A Protein CIAO1; WDR39,SG 76.1 3.4 0.00012 31.7 4.7 33 27-59 62-94 (345)
52 1pgu_A Actin interacting prote 76.0 2.6 9E-05 33.9 4.1 30 27-57 585-614 (615)
53 3ow8_A WD repeat-containing pr 76.0 3 0.0001 32.0 4.3 33 27-59 207-239 (321)
54 4gga_A P55CDC, cell division c 75.8 2.9 9.9E-05 33.0 4.2 32 28-59 366-397 (420)
55 2xzm_R RACK1; ribosome, transl 75.5 4.1 0.00014 31.1 4.9 30 28-57 215-244 (343)
56 3dwl_C Actin-related protein 2 75.3 2.3 7.9E-05 32.2 3.4 33 27-59 206-238 (377)
57 3bg1_A Protein SEC13 homolog; 75.1 4.7 0.00016 30.6 5.1 31 28-58 264-294 (316)
58 3ei3_B DNA damage-binding prot 75.1 5.2 0.00018 30.5 5.4 33 27-59 251-284 (383)
59 4e54_B DNA damage-binding prot 75.1 2.6 9E-05 33.4 3.8 32 28-59 121-153 (435)
60 2pm7_B Protein transport prote 74.5 4.8 0.00017 30.1 5.0 32 27-58 255-286 (297)
61 4aez_A CDC20, WD repeat-contai 74.2 5 0.00017 31.3 5.2 33 27-59 218-250 (401)
62 4g56_B MGC81050 protein; prote 74.1 4.5 0.00015 31.5 4.9 32 28-59 141-172 (357)
63 1got_B GT-beta; complex (GTP-b 73.7 6.5 0.00022 30.0 5.6 33 27-59 271-303 (340)
64 3dwl_C Actin-related protein 2 73.4 4.9 0.00017 30.4 4.8 30 27-56 147-176 (377)
65 2vdu_B TRNA (guanine-N(7)-)-me 73.3 11 0.00039 29.8 7.2 30 26-55 307-337 (450)
66 3frx_A Guanine nucleotide-bind 73.1 6.1 0.00021 29.9 5.4 33 27-59 66-98 (319)
67 3gre_A Serine/threonine-protei 72.8 4.6 0.00016 31.5 4.6 30 27-56 112-141 (437)
68 3gre_A Serine/threonine-protei 72.7 4 0.00014 31.8 4.3 31 27-57 64-95 (437)
69 4h5i_A Guanine nucleotide-exch 72.6 5 0.00017 31.4 4.8 32 28-59 271-302 (365)
70 3vu4_A KMHSV2; beta-propeller 72.6 4.7 0.00016 31.3 4.6 33 27-59 241-273 (355)
71 4h5i_A Guanine nucleotide-exch 72.3 5.1 0.00017 31.4 4.8 32 27-58 313-344 (365)
72 3lrv_A PRE-mRNA-splicing facto 72.2 4.9 0.00017 30.6 4.6 32 27-59 215-246 (343)
73 2pm7_B Protein transport prote 72.1 5.4 0.00019 29.8 4.8 31 27-57 10-40 (297)
74 2hes_X YDR267CP; beta-propelle 71.8 4.7 0.00016 30.8 4.4 30 28-57 109-138 (330)
75 2pm9_A Protein WEB1, protein t 71.7 3.7 0.00013 31.3 3.8 31 27-57 68-98 (416)
76 1vyh_C Platelet-activating fac 71.6 6.2 0.00021 31.2 5.2 33 27-59 109-141 (410)
77 4e54_B DNA damage-binding prot 71.2 4.4 0.00015 32.1 4.3 33 27-59 297-329 (435)
78 2oit_A Nucleoporin 214KDA; NH2 70.9 3.8 0.00013 33.5 3.9 45 11-56 21-65 (434)
79 3mkq_A Coatomer beta'-subunit; 70.6 6.7 0.00023 33.1 5.5 33 27-59 56-88 (814)
80 2xzm_R RACK1; ribosome, transl 70.6 8.5 0.00029 29.3 5.7 32 28-59 78-109 (343)
81 2hes_X YDR267CP; beta-propelle 70.2 5 0.00017 30.6 4.2 31 27-57 59-89 (330)
82 3bg1_A Protein SEC13 homolog; 70.1 5.2 0.00018 30.3 4.3 31 28-58 15-45 (316)
83 4gqb_B Methylosome protein 50; 69.8 6.3 0.00021 30.9 4.9 32 28-59 129-160 (344)
84 3lrv_A PRE-mRNA-splicing facto 69.8 4.2 0.00015 30.9 3.8 32 28-59 172-203 (343)
85 3vu4_A KMHSV2; beta-propeller 69.8 7.4 0.00025 30.1 5.2 33 27-59 196-229 (355)
86 3iz6_a 40S ribosomal protein R 69.5 4.3 0.00015 31.7 3.8 32 28-59 346-377 (380)
87 2ynn_A Coatomer subunit beta'; 69.3 7.9 0.00027 29.0 5.2 33 27-59 229-261 (304)
88 3mkq_A Coatomer beta'-subunit; 68.7 7.6 0.00026 32.8 5.4 32 28-59 15-46 (814)
89 1pgu_A Actin interacting prote 68.6 5.9 0.0002 31.8 4.5 29 28-56 65-96 (615)
90 2ovr_B FBW7, F-BOX/WD repeat p 68.4 5.5 0.00019 31.3 4.2 33 27-59 408-444 (445)
91 2ymu_A WD-40 repeat protein; u 68.3 5.8 0.0002 31.9 4.4 31 27-57 58-88 (577)
92 3dw8_B Serine/threonine-protei 67.1 7 0.00024 30.1 4.5 33 27-59 227-260 (447)
93 1pby_B Quinohemoprotein amine 67.0 8 0.00027 28.2 4.6 30 30-59 283-312 (337)
94 1erj_A Transcriptional repress 66.4 7 0.00024 30.6 4.5 33 27-59 124-156 (393)
95 1erj_A Transcriptional repress 66.3 10 0.00034 29.7 5.4 32 28-59 167-198 (393)
96 2j04_A TAU60, YPL007P, hypothe 66.1 7.1 0.00024 34.9 4.9 33 27-59 130-162 (588)
97 2vdu_B TRNA (guanine-N(7)-)-me 65.3 14 0.00048 29.2 6.1 29 28-56 104-133 (450)
98 2ymu_A WD-40 repeat protein; u 64.8 6.2 0.00021 31.8 4.0 30 27-56 509-538 (577)
99 1vyh_C Platelet-activating fac 64.7 12 0.00042 29.4 5.7 33 27-59 193-225 (410)
100 2oit_A Nucleoporin 214KDA; NH2 64.3 8.1 0.00028 31.5 4.6 33 27-59 150-183 (434)
101 2j04_B YDR362CP, TAU91; beta p 63.7 8.1 0.00028 32.8 4.6 32 28-59 209-246 (524)
102 2pbi_B Guanine nucleotide-bind 63.2 8.3 0.00028 29.8 4.3 33 27-59 241-273 (354)
103 2xyi_A Probable histone-bindin 63.0 8.9 0.00031 30.3 4.5 32 27-58 232-264 (430)
104 3v7d_B Cell division control p 62.4 11 0.00039 29.4 5.0 33 27-59 311-343 (464)
105 1nr0_A Actin interacting prote 60.7 9.6 0.00033 32.0 4.5 33 27-59 537-569 (611)
106 1nr0_A Actin interacting prote 60.3 13 0.00046 31.0 5.4 32 28-59 241-272 (611)
107 3dm0_A Maltose-binding peripla 59.6 14 0.00047 31.3 5.4 33 27-59 431-463 (694)
108 2xyi_A Probable histone-bindin 59.6 9.9 0.00034 30.1 4.2 32 28-59 380-412 (430)
109 4gqb_B Methylosome protein 50; 59.6 24 0.00081 27.5 6.4 31 28-59 84-114 (344)
110 3bws_A Protein LP49; two-domai 58.6 13 0.00046 28.5 4.7 30 28-57 402-432 (433)
111 3v7d_B Cell division control p 58.4 13 0.00045 29.0 4.7 32 27-59 163-194 (464)
112 4gq1_A NUP37; propeller, trans 57.1 10 0.00035 29.7 3.9 32 28-59 138-177 (393)
113 3sfz_A APAF-1, apoptotic pepti 56.4 17 0.00059 32.6 5.6 33 27-59 658-690 (1249)
114 3sfz_A APAF-1, apoptotic pepti 55.3 15 0.00051 33.0 5.1 33 27-59 616-648 (1249)
115 1jmx_B Amine dehydrogenase; ox 54.5 17 0.00058 26.7 4.5 31 29-59 297-327 (349)
116 1l0q_A Surface layer protein; 54.2 22 0.00077 26.8 5.3 32 28-59 75-107 (391)
117 3dm0_A Maltose-binding peripla 53.3 15 0.00051 31.1 4.5 30 28-57 664-693 (694)
118 3jro_A Fusion protein of prote 52.8 11 0.00037 32.8 3.7 31 27-57 10-40 (753)
119 3jro_A Fusion protein of prote 51.0 17 0.00058 31.6 4.6 32 27-58 205-239 (753)
120 3hfq_A Uncharacterized protein 50.3 38 0.0013 25.2 6.0 30 29-58 288-318 (347)
121 4gq1_A NUP37; propeller, trans 49.6 19 0.00064 28.2 4.3 32 28-59 188-220 (393)
122 2oaj_A Protein SNI1; WD40 repe 48.4 16 0.00055 32.9 4.2 32 28-59 19-50 (902)
123 1ri6_A Putative isomerase YBHE 48.0 14 0.00047 27.0 3.1 29 28-56 39-68 (343)
124 3bws_A Protein LP49; two-domai 46.8 37 0.0013 26.0 5.6 32 28-59 171-202 (433)
125 1l0q_A Surface layer protein; 46.5 35 0.0012 25.7 5.3 32 28-59 33-65 (391)
126 3scy_A Hypothetical bacterial 45.9 21 0.00074 26.9 4.0 31 29-59 308-339 (361)
127 1ri6_A Putative isomerase YBHE 43.8 57 0.0019 23.6 5.9 31 29-59 279-310 (343)
128 2ojh_A Uncharacterized protein 43.5 33 0.0011 24.0 4.4 31 28-59 43-74 (297)
129 1xip_A Nucleoporin NUP159; bet 41.8 13 0.00044 31.0 2.3 45 12-57 22-67 (388)
130 3vgz_A Uncharacterized protein 40.8 80 0.0027 23.0 6.4 35 25-59 229-264 (353)
131 3hfq_A Uncharacterized protein 40.8 70 0.0024 23.7 6.1 30 30-59 89-119 (347)
132 1p22_A F-BOX/WD-repeat protein 38.3 46 0.0016 26.0 5.0 30 28-59 175-204 (435)
133 2ovr_B FBW7, F-BOX/WD repeat p 37.4 53 0.0018 25.5 5.2 31 27-59 363-393 (445)
134 3vgz_A Uncharacterized protein 35.6 47 0.0016 24.3 4.4 31 29-59 187-217 (353)
135 3u4y_A Uncharacterized protein 33.9 34 0.0012 25.1 3.4 36 24-59 270-306 (331)
136 1nir_A Nitrite reductase; hemo 33.0 66 0.0022 27.0 5.4 29 28-56 180-208 (543)
137 2l72_A Tgadf, actin depolymeri 32.9 24 0.00083 25.3 2.3 17 22-38 76-99 (139)
138 1p22_A F-BOX/WD-repeat protein 32.7 70 0.0024 24.9 5.2 30 28-59 258-287 (435)
139 3bbn_P Ribosomal protein S16; 32.3 18 0.00062 24.8 1.4 18 5-22 26-43 (88)
140 1q7f_A NHL, brain tumor CG1071 31.8 76 0.0026 22.9 4.9 30 29-59 253-282 (286)
141 3pys_P 30S ribosomal protein S 31.6 23 0.00078 24.0 1.8 18 5-22 26-43 (83)
142 3scy_A Hypothetical bacterial 31.6 63 0.0021 24.2 4.6 31 28-58 212-243 (361)
143 1vkk_A GMF-gamma, GLIA maturat 30.1 27 0.00092 25.3 2.2 12 27-38 96-107 (154)
144 1q67_A Decapping protein invol 30.0 48 0.0016 26.5 3.7 28 14-59 26-53 (231)
145 3u4y_A Uncharacterized protein 29.8 1.2E+02 0.0042 22.0 5.9 32 28-59 177-209 (331)
146 1jmx_B Amine dehydrogenase; ox 29.8 62 0.0021 23.5 4.2 30 29-58 94-135 (349)
147 3dr2_A Exported gluconolactona 29.2 1.7E+02 0.0059 21.5 7.9 48 11-58 167-225 (305)
148 1m4j_A A6 gene product, twinfi 28.8 31 0.0011 24.3 2.2 10 22-31 63-72 (142)
149 2lj8_A Cofilin/actin depolymer 28.7 30 0.001 24.6 2.2 8 31-38 90-97 (144)
150 2ojh_A Uncharacterized protein 28.0 94 0.0032 21.5 4.7 30 29-58 131-161 (297)
151 2vac_A Twinfilin-2; transferas 28.0 33 0.0011 23.9 2.2 11 22-32 60-70 (134)
152 3r8n_P 30S ribosomal protein S 27.4 18 0.0006 24.5 0.7 19 5-23 26-44 (82)
153 2j04_B YDR362CP, TAU91; beta p 26.6 47 0.0016 28.0 3.4 33 27-59 484-519 (524)
154 1v6f_A MGMF-beta, GLIA maturat 26.2 35 0.0012 24.4 2.2 11 28-38 91-101 (151)
155 1pby_B Quinohemoprotein amine 26.0 99 0.0034 22.2 4.7 30 30-59 85-126 (337)
156 2kvk_A Actin severing and dyna 24.8 41 0.0014 23.8 2.3 8 22-29 59-66 (144)
157 1jof_A Carboxy-CIS,CIS-muconat 23.5 1.1E+02 0.0038 23.2 4.8 30 28-57 255-291 (365)
158 1qks_A Cytochrome CD1 nitrite 23.4 1.2E+02 0.0042 25.9 5.4 29 28-56 198-226 (567)
159 3bn0_A 30S ribosomal protein S 22.7 24 0.00082 25.2 0.7 17 5-21 27-43 (112)
160 1jof_A Carboxy-CIS,CIS-muconat 22.1 1.2E+02 0.0041 23.1 4.7 30 28-57 194-224 (365)
161 2j04_A TAU60, YPL007P, hypothe 22.1 80 0.0027 28.1 4.1 27 28-54 87-113 (588)
162 2pof_A CDP-diacylglycerol pyro 21.8 35 0.0012 27.1 1.5 14 122-135 96-109 (227)
163 1hqz_1 ABP1P, actin-binding pr 21.4 50 0.0017 23.0 2.2 10 29-38 81-90 (141)
164 2qkl_A DCP1 protein, SPBC3B9.2 20.7 30 0.001 24.8 0.9 15 45-59 28-42 (127)
165 2los_A Transmembrane protein 1 25.2 22 0.00076 25.6 0.0 36 11-50 4-39 (121)
No 1
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00047 Score=62.53 Aligned_cols=91 Identities=21% Similarity=0.276 Sum_probs=57.3
Q ss_pred cceEEEEEeecCCCeEEEecccceEEEEEecCCCc---------ceeeEeEEEeeeeeCCCCccccCccccccccCCCCC
Q psy6173 26 RLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTS---------TDVTVKISTMNIVSDRDSFVWKGHARLGVKHTDSKD 96 (137)
Q Consensus 26 rlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e~---------~~~ei~~l~v~l~~d~e~~~w~g~~~L~vr~~~~~~ 96 (137)
..+|..|+|||.+++|++|+..|.|.||++...+. ...++.+...++...+ .++..+..|.
T Consensus 488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----- 557 (902)
T 2oaj_A 488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTN-----GVLVDVRDRA----- 557 (902)
T ss_dssp SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSS-----CSEEECGGGC-----
T ss_pred CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCc-----cccccccccC-----
Confidence 35899999999999999999999999999986530 1111211111222111 2334444443
Q ss_pred CCCccccccccCCCCcceEEEEeCCCcceeEEEeecccc
Q psy6173 97 KEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 135 (137)
Q Consensus 97 ~~~vk~~~~~~ppGfQ~~lv~ql~PP~~ITsLal~SsyG 135 (137)
.+ ....|||+..+++. ....||+||++ ..|
T Consensus 558 ------~~-~~~~g~~~~~~l~~-h~~~V~svafS-pdG 587 (902)
T 2oaj_A 558 ------PT-GVRQGFMPSTAVHA-NKGKTSAINNS-NIG 587 (902)
T ss_dssp ------CT-TCSEEEEEEEEECC-CSCSEEEEEEC-BTS
T ss_pred ------CC-CCCCccceeEEEEc-CCCcEEEEEec-CCc
Confidence 22 34558888766665 56889999954 555
No 2
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=91.24 E-value=0.49 Score=34.46 Aligned_cols=33 Identities=24% Similarity=0.155 Sum_probs=30.3
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|.|..+.|+++|..|.|.+|+++...
T Consensus 307 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 307 GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp SCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 369999999999999999999999999998765
No 3
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=90.91 E-value=0.58 Score=34.69 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=28.1
Q ss_pred eEEEEEeecCC-CeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVT-GTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeS-r~L~VaG~sG~Vil~~f~~~e 59 (137)
+|.-|+|+|+. .+|+.||..|.|.||++.+.+
T Consensus 40 ~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~ 72 (340)
T 4aow_A 40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDE 72 (340)
T ss_dssp CEEEEEECTTCTTEEEEEETTSCEEEEEECCSS
T ss_pred CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 68899999985 578889999999999998766
No 4
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=89.59 E-value=0.62 Score=36.21 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=29.1
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
=+|.-|.|.|....|++|+..|.|.||++...+
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~ 61 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQEN 61 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC--
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCC
Confidence 489999999999999999999999999998654
No 5
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=89.40 E-value=0.6 Score=33.98 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=30.0
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
=+|..|.|.|....|++|+..|.|.+|++....
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 44 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT 44 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSS
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC
Confidence 479999999999999999999999999998654
No 6
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=88.94 E-value=0.45 Score=35.41 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=29.7
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|+|..+.|++++..|.|.+|++++..
T Consensus 316 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 316 GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 368889999999999999999999999998654
No 7
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=88.73 E-value=0.53 Score=35.08 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=27.4
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
-.|..++|.|.++.|++++..|.|.+|++.+
T Consensus 336 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 336 AAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 4799999999999999999999999999853
No 8
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=87.90 E-value=0.62 Score=34.54 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=28.5
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
-.|..++|.|..++|++||..|.|.||+++.
T Consensus 307 ~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 307 PQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 4789999999999999999999999999865
No 9
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=87.32 E-value=0.65 Score=34.08 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=28.3
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTK 58 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~ 58 (137)
.|.-|+|.|...+|+.||..|.|.||++.+.
T Consensus 286 ~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 286 RVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 6899999999999999999999999998654
No 10
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=86.43 E-value=0.71 Score=34.28 Aligned_cols=32 Identities=38% Similarity=0.565 Sum_probs=29.7
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
+|..+.|+|..+.|++++..|.|.+|++...+
T Consensus 275 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 275 AVNGIAFHPVHGTLATVGSDGRFSFWDKDART 306 (368)
T ss_dssp CEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred ceEEEEEecCCCEEEEEccCCeEEEEECCCCc
Confidence 69999999999999999999999999998655
No 11
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=86.29 E-value=0.98 Score=33.56 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=30.2
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
=+|.-++|+|....|++++..|.|.+|++...+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~ 44 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA 44 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC
Confidence 479999999999999999999999999998665
No 12
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=86.19 E-value=0.94 Score=34.26 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=30.0
Q ss_pred ceEEEEEeec-CCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCP-VTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCp-eSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..|.|+| ....|++++..|.|.+|++...+
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~ 77 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS 77 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc
Confidence 4799999999 89999999999999999998765
No 13
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=85.89 E-value=5 Score=29.64 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=29.4
Q ss_pred ceEEEEEeecCCC-eEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTG-TLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr-~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|+|..+ .|++++..|.|.+|+++...
T Consensus 260 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 260 STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 4789999999988 79999999999999998665
No 14
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=85.86 E-value=1.7 Score=31.74 Aligned_cols=33 Identities=9% Similarity=0.144 Sum_probs=29.9
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|.-|.|.|..+.|++|+..|.|.+|.++..+
T Consensus 68 ~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~ 100 (318)
T 4ggc_A 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 100 (318)
T ss_dssp CCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred CeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence 468999999999999999999999999987665
No 15
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=84.93 E-value=1.5 Score=32.50 Aligned_cols=33 Identities=3% Similarity=-0.049 Sum_probs=30.0
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..|.|.|....|++++..|.|.+|++...+
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 65 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE 65 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTTCC
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch
Confidence 479999999999999999999999999987665
No 16
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=84.74 E-value=1.2 Score=33.05 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=29.7
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|.|...+|++++..|.|.+|+++..+
T Consensus 87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 119 (368)
T 3mmy_A 87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ 119 (368)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC
Confidence 368899999999999999999999999998665
No 17
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=84.57 E-value=1.9 Score=32.09 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=30.2
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
..|..+.|.|....|++++..|.|.+|+++..+
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 98 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 98 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCCCc
Confidence 578999999999999999999999999998665
No 18
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=84.40 E-value=1.3 Score=33.48 Aligned_cols=33 Identities=12% Similarity=-0.042 Sum_probs=29.0
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|.|..+.|++++..|.|.+|+++..+
T Consensus 335 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 335 KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 468899999999999999999999999998776
No 19
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=83.20 E-value=1.4 Score=32.97 Aligned_cols=31 Identities=3% Similarity=-0.018 Sum_probs=28.4
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
-+|..|+|.|...+|++|+..|.|.+|++..
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 42 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEG 42 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEET
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCC
Confidence 3699999999999999999999999999974
No 20
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=82.32 E-value=1.6 Score=32.63 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=29.7
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..|.|.|....|++++..|.|.+|++...+
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 478999999999999999999999999997654
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=81.86 E-value=1.3 Score=33.56 Aligned_cols=29 Identities=3% Similarity=0.011 Sum_probs=27.4
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEec
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLS 56 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~ 56 (137)
.|..+.|.|..+.|++++..|.|.+|++.
T Consensus 396 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 396 YIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ceEEEEccCCCceEEEEecCceEEEEeec
Confidence 79999999999999999999999999875
No 22
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=81.84 E-value=2.5 Score=30.67 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=28.5
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..|+| |..++|++++..|.|.+|++...+
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~ 50 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW 50 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEEEEESSSE
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE
Confidence 46888999 999999999999999999997655
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=81.71 E-value=3.4 Score=31.77 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=29.5
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..|+|.|...+|++++..|.|.+|+++..+
T Consensus 106 ~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~ 138 (345)
T 3fm0_A 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECTTS
T ss_pred CCceEEEEeCCCCEEEEEECCCeEEEEECCCCC
Confidence 368899999999999999999999999997654
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=81.53 E-value=2.2 Score=31.26 Aligned_cols=33 Identities=9% Similarity=-0.001 Sum_probs=30.0
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|.|..+.|++++..|.|.+|++...+
T Consensus 266 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 468999999999999999999999999998766
No 25
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=81.42 E-value=2.6 Score=32.02 Aligned_cols=33 Identities=27% Similarity=0.227 Sum_probs=30.0
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|.|..+.|++++..|.|.+|+++..+
T Consensus 292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324 (397)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 468999999999999999999999999997665
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=81.10 E-value=2.9 Score=30.58 Aligned_cols=33 Identities=15% Similarity=-0.034 Sum_probs=29.9
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|+|....|++++..|.|.+|.++..+
T Consensus 184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence 368899999999999999999999999998665
No 27
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=80.76 E-value=3.1 Score=31.89 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=29.1
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|.-|.|.|.++.|++|+..|.|.+|+....+
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~ 88 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN 88 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 68999999999999999999999999986655
No 28
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=80.75 E-value=3.1 Score=31.93 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=30.0
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|.|....|++|+..|.|.+|.+...+
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 172 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGS 172 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 468999999999999999999999999998665
No 29
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=80.37 E-value=2 Score=31.84 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=28.8
Q ss_pred ceEEEEEeecCCC-eEEEecccceEEEEEe-cCCC
Q psy6173 27 LAVKKICFCPVTG-TLLIAGTAGHVILAKL-STKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr-~L~VaG~sG~Vil~~f-~~~e 59 (137)
-.|..+.|+|... .|++++..|.|.+|.+ ...+
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 91 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence 3688999999999 9999999999999998 5544
No 30
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=80.35 E-value=3 Score=31.07 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=29.9
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|.|....|++++..|.|.+|+++...
T Consensus 257 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 257 DVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 468999999999999999999999999998654
No 31
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=80.28 E-value=1.9 Score=33.73 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=26.2
Q ss_pred eEEEEEeec-CCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCP-VTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCp-eSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|.-|+|.| ..++|+.+|..|.|.+|.+....
T Consensus 313 ~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 313 FVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 588899999 67889999999999999997665
No 32
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=80.25 E-value=3 Score=31.36 Aligned_cols=32 Identities=31% Similarity=0.290 Sum_probs=29.3
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|.-|.|.|....|++|+..|.|.+|++....
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~ 46 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQV 46 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 58999999999999999999999999987654
No 33
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=79.94 E-value=2.2 Score=31.63 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=29.7
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..|.|.|....|++++..|.|.+|+++..+
T Consensus 162 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 194 (366)
T 3k26_A 162 DEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR 194 (366)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEESCSHH
T ss_pred CceeEEEECCCCCEEEEecCCCCEEEEECCCCc
Confidence 579999999999999999999999999997543
No 34
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=79.73 E-value=1.8 Score=32.46 Aligned_cols=32 Identities=9% Similarity=0.030 Sum_probs=28.9
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|.-+.|.|....|++++..|.|.+|++...+
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~ 41 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK 41 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc
Confidence 58889999999999999999999999997663
No 35
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=79.36 E-value=2.4 Score=33.42 Aligned_cols=33 Identities=9% Similarity=0.144 Sum_probs=29.9
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|.-|+|.|...+|++|+..|.|.+|.+...+
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence 469999999999999999999999999987655
No 36
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=79.28 E-value=3.2 Score=30.84 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=29.1
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|..+.|.|....|++++..|.|.+|.+...+
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 56 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc
Confidence 69999999999999999999999999987654
No 37
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=78.95 E-value=3.4 Score=29.94 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=29.6
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|.|....|++++..|.|.+|++.+..
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 92 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATS 92 (313)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTCCT
T ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEeeecC
Confidence 468889999999999999999999999987654
No 38
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=78.53 E-value=3.5 Score=31.50 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=29.6
Q ss_pred ceEEEEEeecCC-CeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVT-GTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeS-r~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|.-|.|+|.. ++|++|+..|.|.+|++...+
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 107 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN 107 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc
Confidence 468999999998 899999999999999998655
No 39
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=78.45 E-value=3.9 Score=31.70 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=29.3
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|.-+.|+|..++|+.|+..|.|.+|+.....
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~ 97 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN 97 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Confidence 369999999999999999999999999876554
No 40
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=78.10 E-value=3.3 Score=32.28 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=29.7
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..|+|.|...+|++++..|.|.+|++...+
T Consensus 135 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 167 (401)
T 4aez_A 135 TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT 167 (401)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence 468999999999999999999999999987665
No 41
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=77.72 E-value=3.1 Score=32.34 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=29.2
Q ss_pred ceEEEEEeec-CCCeEEEecccceEEEEEecCC
Q psy6173 27 LAVKKICFCP-VTGTLLIAGTAGHVILAKLSTK 58 (137)
Q Consensus 27 lAIq~I~lCp-eSr~L~VaG~sG~Vil~~f~~~ 58 (137)
-+|..|.|+| ....|++|+..|.|.+|++...
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 4799999999 8889999999999999999875
No 42
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=77.62 E-value=3.6 Score=32.13 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=29.7
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|.-+.|.|..+.|+.|+..|.|.+|.....+
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~ 99 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ 99 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 368999999999999999999999999986655
No 43
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=77.56 E-value=4 Score=31.00 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=29.7
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|.|...+|++++..|.|.+|++....
T Consensus 197 ~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 197 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 368889999999999999999999999997665
No 44
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=77.53 E-value=3.4 Score=31.23 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=29.6
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..|.|+|....|++++..|.|.+|++...+
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 150 APIVSVKWNKDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp SCEEEEEECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred ccEEEEEECCCCCEEEEEecCCeEEEEECCCCc
Confidence 468899999999999999999999999997655
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=76.95 E-value=3.7 Score=31.55 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=29.8
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|.|..+.|++++..|.|.+|.++..+
T Consensus 182 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 468999999999999999999999999987655
No 46
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=76.90 E-value=3.1 Score=30.78 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=27.7
Q ss_pred ceEEEEEeecCCCeEE-EecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLL-IAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~-VaG~sG~Vil~~f~~~e 59 (137)
-.|..++|.|..+.|+ .++..|.|.+|.+.+-+
T Consensus 322 ~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 322 QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 3689999999999999 58889999999998654
No 47
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=76.72 E-value=3.6 Score=31.91 Aligned_cols=33 Identities=6% Similarity=-0.032 Sum_probs=29.7
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..|.|.|....|++++..|.|.+|+++..+
T Consensus 177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence 368999999999999999999999999987655
No 48
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=76.64 E-value=3.9 Score=31.16 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=29.3
Q ss_pred ceEEEEEeec-CCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCP-VTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCp-eSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|+| ....|++++..|.|.+|++...+
T Consensus 263 ~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~ 296 (416)
T 2pm9_A 263 KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE 296 (416)
T ss_dssp SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC
T ss_pred CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc
Confidence 4689999999 88899999999999999987665
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=76.58 E-value=3.6 Score=31.22 Aligned_cols=31 Identities=10% Similarity=-0.038 Sum_probs=27.9
Q ss_pred ceEEEEEeecCC----------CeEEEecccceEEEEEecC
Q psy6173 27 LAVKKICFCPVT----------GTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 27 lAIq~I~lCpeS----------r~L~VaG~sG~Vil~~f~~ 57 (137)
-.|..++|.|.. ..|++++..|.|.+|+++.
T Consensus 355 ~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 355 PGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp CCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred CceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 479999999997 6999999999999999864
No 50
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=76.38 E-value=3.7 Score=31.51 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=29.0
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|..++|+|..+.|+.|+..|.|.+|+++..+
T Consensus 250 ~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence 58889999999999999999999999987655
No 51
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=76.10 E-value=3.4 Score=31.75 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=29.1
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..|+|.|..++|++|+..|.|.+|+++..+
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~ 94 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQDD 94 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-
T ss_pred CcEEEEEECCCCCEEEEEECCCcEEEEEccCCC
Confidence 468999999999999999999999999987653
No 52
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=76.04 E-value=2.6 Score=33.91 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=27.1
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
-+|..+.|+|..+ |+++|..|.|.+|+++.
T Consensus 585 ~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 585 DGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred cceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 4799999999999 99999999999999864
No 53
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=76.00 E-value=3 Score=31.98 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=29.7
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
..|..+.|.|.++.|++|+..|.|.+|+++..+
T Consensus 207 ~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp SCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence 468889999999999999999999999998665
No 54
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=75.83 E-value=2.9 Score=32.96 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=29.0
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|..|+|.|...+|+.||..|.|.+|++.+.+
T Consensus 366 ~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 366 RVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp CEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 68999999999999999999999999987544
No 55
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=75.47 E-value=4.1 Score=31.10 Aligned_cols=30 Identities=10% Similarity=0.254 Sum_probs=27.4
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
.|..++|.|..++|++++..|.|.+|.+..
T Consensus 215 ~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 215 NVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 588899999999999999999999999943
No 56
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=75.29 E-value=2.3 Score=32.25 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=29.2
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|+|...+|++++..|.|.+|+++..+
T Consensus 206 ~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 206 GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp SSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 358999999999999999999999999998776
No 57
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=75.13 E-value=4.7 Score=30.58 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=27.9
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTK 58 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~ 58 (137)
.|..++|.|..++|++||..|.|.+|+.+..
T Consensus 264 ~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 264 VVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp CEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 5788999999999999999999999998643
No 58
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=75.09 E-value=5.2 Score=30.53 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=29.6
Q ss_pred ceEEEEEeec-CCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCP-VTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCp-eSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..|.|+| ....|++++..|.|.+|.++..+
T Consensus 251 ~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 251 KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 3688999999 88999999999999999998766
No 59
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=75.07 E-value=2.6 Score=33.45 Aligned_cols=32 Identities=16% Similarity=0.417 Sum_probs=26.8
Q ss_pred eEEEEEeecC-CCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPV-TGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpe-Sr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|.-|+|.|. ..+|++|+..|.|.||++...+
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~ 153 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD 153 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCS
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC
Confidence 4999999995 5678889999999999987554
No 60
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=74.53 E-value=4.8 Score=30.11 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=28.4
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTK 58 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~ 58 (137)
-.|..++|.|...+|+++|..|.|.+|+.+..
T Consensus 255 ~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 255 DVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp SCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence 36888999999999999999999999998643
No 61
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=74.21 E-value=5 Score=31.26 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=29.8
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|.|....|++++..|.|.+|.++..+
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 250 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI 250 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTCSS
T ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC
Confidence 468899999999999999999999999998755
No 62
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=74.07 E-value=4.5 Score=31.50 Aligned_cols=32 Identities=22% Similarity=0.145 Sum_probs=29.3
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|.-|+|.|...+|++|+..|.|.+|.++..+
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~ 172 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA 172 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTTE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 58899999999999999999999999987665
No 63
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=73.68 E-value=6.5 Score=30.02 Aligned_cols=33 Identities=9% Similarity=-0.005 Sum_probs=29.9
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
..|..++|.|..+.|++++..|.|.+|...+.+
T Consensus 271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 478999999999999999999999999987665
No 64
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=73.37 E-value=4.9 Score=30.38 Aligned_cols=30 Identities=7% Similarity=0.005 Sum_probs=28.0
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEec
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLS 56 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~ 56 (137)
-.|..|.|.|....|++++..|.|.+|+++
T Consensus 147 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 147 STILSLDWHPNNVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp SCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence 578999999999999999999999999986
No 65
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=73.26 E-value=11 Score=29.76 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=27.9
Q ss_pred cceEEEEEeecCCCeEEEec-ccceEEEEEe
Q psy6173 26 RLAVKKICFCPVTGTLLIAG-TAGHVILAKL 55 (137)
Q Consensus 26 rlAIq~I~lCpeSr~L~VaG-~sG~Vil~~f 55 (137)
..+|..|.|+|..+.|++++ ..|.|.+|++
T Consensus 307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred eEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 47899999999999999998 8899999999
No 66
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=73.10 E-value=6.1 Score=29.93 Aligned_cols=33 Identities=15% Similarity=0.009 Sum_probs=29.9
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-+|.-+.|.|..++|+.|+..|.|.+|.+...+
T Consensus 66 ~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~ 98 (319)
T 3frx_A 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 468889999999999999999999999997665
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=72.77 E-value=4.6 Score=31.45 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=27.8
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEec
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLS 56 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~ 56 (137)
-.|.-|.|+|....|++|+..|.|.+|++.
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~ 141 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVN 141 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEec
Confidence 469999999999999999999999999995
No 68
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=72.75 E-value=4 Score=31.82 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=28.6
Q ss_pred ceEEEEEeec-CCCeEEEecccceEEEEEecC
Q psy6173 27 LAVKKICFCP-VTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 27 lAIq~I~lCp-eSr~L~VaG~sG~Vil~~f~~ 57 (137)
-+|..|+|+| ....|++|+..|.|.||++..
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~ 95 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKE 95 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHH
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcc
Confidence 4799999999 888999999999999999976
No 69
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=72.60 E-value=5 Score=31.42 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=28.7
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
+|.-|+|.|..++|++|+..|.|.||.....+
T Consensus 271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 271 GITSMDVDMKGELAVLASNDNSIALVKLKDLS 302 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred CeEeEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence 57889999999999999999999999987654
No 70
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=72.55 E-value=4.7 Score=31.27 Aligned_cols=33 Identities=6% Similarity=0.040 Sum_probs=29.8
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..++|.|.+..|++++..|.|.+|+++...
T Consensus 241 ~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 241 ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp SCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred CcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 468999999999999999999999999997654
No 71
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=72.32 E-value=5.1 Score=31.37 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=29.0
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTK 58 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~ 58 (137)
.+|..|+|.|.+++|+.|+..|.|-||++...
T Consensus 313 ~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 313 FAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 47999999999999999999999999998543
No 72
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=72.21 E-value=4.9 Score=30.60 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=28.4
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..|.|+|....|++++ .+.|.+|.+++.+
T Consensus 215 ~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 215 AKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV 246 (343)
T ss_dssp SCEEEEEECTTSSEEEEEE-SSBEEEEETTSST
T ss_pred CCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC
Confidence 4799999999999999988 6699999998876
No 73
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=72.07 E-value=5.4 Score=29.82 Aligned_cols=31 Identities=0% Similarity=-0.030 Sum_probs=28.4
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
-.|..++|.|..++|++|+..|.|.||++..
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~ 40 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEG 40 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCS
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCC
Confidence 3689999999999999999999999999964
No 74
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=71.82 E-value=4.7 Score=30.77 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=27.5
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
.|..+.|.|...+|+.|+..|.|.+|+++.
T Consensus 109 ~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 109 EVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 588899999999999999999999999953
No 75
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=71.69 E-value=3.7 Score=31.31 Aligned_cols=31 Identities=10% Similarity=-0.004 Sum_probs=28.9
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
-.|..|.|.|...+|++++..|.|.+|++..
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~ 98 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNE 98 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSS
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeeccc
Confidence 3699999999999999999999999999987
No 76
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=71.61 E-value=6.2 Score=31.22 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=30.0
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|.|....|++|+..|.|.+|.+...+
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~ 141 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGD 141 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 478999999999999999999999999988665
No 77
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=71.17 E-value=4.4 Score=32.13 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=30.0
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..|+|+|...+|++++..|.|.+|.+...+
T Consensus 297 ~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 297 HPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp SCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred ccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 468999999999999999999999999998665
No 78
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=70.92 E-value=3.8 Score=33.48 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=35.8
Q ss_pred CcccccccCCCCCCccceEEEEEeecCCCeEEEecccceEEEEEec
Q psy6173 11 LNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLS 56 (137)
Q Consensus 11 PfrkvG~~DP~sDDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~ 56 (137)
..+++-.||+..+-|.-.+..|++++..+.|++||..| |.+|...
T Consensus 21 ~~~~vri~~~~~~~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~ 65 (434)
T 2oit_A 21 ALKKVRIFDSPEELPKERSSLLAVSNKYGLVFAGGASG-LQIFPTK 65 (434)
T ss_dssp ECCEEECSCCCSSCCCSCCBCEEEETTTTEEEEEETTE-EEEEEHH
T ss_pred eeeeEEecCCccccCCCCccEEEEecCCCEEEEECCCE-EEEEEch
Confidence 34567778887665666789999999999999999988 7776654
No 79
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=70.62 E-value=6.7 Score=33.12 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=30.0
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|.|..+.|++++..|.|.+|.++..+
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 88 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 468999999999999999999999999987665
No 80
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=70.55 E-value=8.5 Score=29.29 Aligned_cols=32 Identities=16% Similarity=0.059 Sum_probs=29.2
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|..+.|.|....|+.|+..|.|.+|.++..+
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~ 109 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGT 109 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSC
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 58889999999999999999999999997665
No 81
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=70.16 E-value=5 Score=30.62 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=27.3
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
-+|..|+|.|...+|++++..|.|.+|....
T Consensus 59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~ 89 (330)
T 2hes_X 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEE 89 (330)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEC--
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEEccc
Confidence 4799999999999999999999999998853
No 82
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=70.12 E-value=5.2 Score=30.30 Aligned_cols=31 Identities=6% Similarity=-0.014 Sum_probs=28.5
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTK 58 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~ 58 (137)
+|.-|.|.|..++|+.|+..|.|.||++...
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~ 45 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNG 45 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEEETT
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEecCC
Confidence 6999999999999999999999999998754
No 83
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=69.84 E-value=6.3 Score=30.86 Aligned_cols=32 Identities=6% Similarity=0.021 Sum_probs=29.2
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
+|.-|+|.|...+|++|+..|.|.+|.++..+
T Consensus 129 ~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~ 160 (344)
T 4gqb_B 129 IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV 160 (344)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 58889999999999999999999999987665
No 84
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=69.80 E-value=4.2 Score=30.94 Aligned_cols=32 Identities=13% Similarity=0.014 Sum_probs=29.0
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|..++|.|....|++|+..|.|.+|.++..+
T Consensus 172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence 47889999999999999999999999998665
No 85
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=69.76 E-value=7.4 Score=30.12 Aligned_cols=33 Identities=9% Similarity=0.101 Sum_probs=29.7
Q ss_pred ceEEEEEeecCCCeEEEecccce-EEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGH-VILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~-Vil~~f~~~e 59 (137)
-.|..|+|.|....|+.|+..|. |.+|.++..+
T Consensus 196 ~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~ 229 (355)
T 3vu4_A 196 NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV 229 (355)
T ss_dssp SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 36899999999999999999998 9999998665
No 86
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=69.53 E-value=4.3 Score=31.66 Aligned_cols=32 Identities=6% Similarity=0.015 Sum_probs=28.6
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|.-+.|.|....|++|+..|.|.+|.++...
T Consensus 346 ~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 346 RISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 57889999999999999999999999997543
No 87
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=69.34 E-value=7.9 Score=29.01 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=29.0
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|.|....|+.|+..|.|.+|+.+..+
T Consensus 229 ~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 357888999999999999999999999987665
No 88
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=68.68 E-value=7.6 Score=32.80 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=29.2
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|.-|+|.|....|++++..|.|.+|+.....
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~ 46 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV 46 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 58999999999999999999999999987654
No 89
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=68.64 E-value=5.9 Score=31.82 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=27.5
Q ss_pred e-EEEEEeec--CCCeEEEecccceEEEEEec
Q psy6173 28 A-VKKICFCP--VTGTLLIAGTAGHVILAKLS 56 (137)
Q Consensus 28 A-Iq~I~lCp--eSr~L~VaG~sG~Vil~~f~ 56 (137)
+ |..+.|.| ..+.|++++..|.|.+|++.
T Consensus 65 ~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~ 96 (615)
T 1pgu_A 65 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 96 (615)
T ss_dssp SCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred ceEEEEEECcCCCCCEEEEecCCCEEEEEeCC
Confidence 5 99999999 99999999999999999996
No 90
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=68.36 E-value=5.5 Score=31.33 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=29.3
Q ss_pred ceEEEEEeecCCCeEEEecccce----EEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGH----VILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~----Vil~~f~~~e 59 (137)
-.|..+.|.|....|++|+..|. |.+|.|+.+.
T Consensus 408 ~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 408 GVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp CEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred ceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 46899999999999999999997 9999998764
No 91
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=68.31 E-value=5.8 Score=31.94 Aligned_cols=31 Identities=23% Similarity=0.159 Sum_probs=27.8
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
-+|.-|+|.|..++|++++..|.|.||..+.
T Consensus 58 ~~V~~l~fspdg~~las~~~d~~i~vWd~~~ 88 (577)
T 2ymu_A 58 SSVWGVAFSPDGQTIASASDDKTVKLWNRNG 88 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 4689999999999999999999999998643
No 92
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=67.10 E-value=7 Score=30.13 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=29.3
Q ss_pred ceEEEEEeecCC-CeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVT-GTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeS-r~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|.-+.|.|.. ..|++++..|.|.+|.++..+
T Consensus 227 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 227 EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 358999999998 899999999999999998655
No 93
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=67.01 E-value=8 Score=28.24 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=23.5
Q ss_pred EEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 30 KKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 30 q~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
..+.|.|..++|.+++..|.|.+|.....+
T Consensus 283 ~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp CEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred eeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 456788888888888888888888876655
No 94
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=66.44 E-value=7 Score=30.58 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=29.5
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
..|.-+.|.|....|++|+..|.|.+|.+...+
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~ 156 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK 156 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 358999999999999999999999999987654
No 95
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=66.35 E-value=10 Score=29.67 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=28.8
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|.-+.|.|...+|++++..|.|.+|+++..+
T Consensus 167 ~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred CEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence 58889999999999999999999999987654
No 96
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=66.12 E-value=7.1 Score=34.87 Aligned_cols=33 Identities=6% Similarity=0.277 Sum_probs=30.1
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.+|.-++|-|++++|++||..|+|.+|......
T Consensus 130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp TCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 479999999999999999999999999998753
No 97
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=65.25 E-value=14 Score=29.21 Aligned_cols=29 Identities=7% Similarity=0.176 Sum_probs=26.5
Q ss_pred eEEEEEeecCCCeE-EEecccceEEEEEec
Q psy6173 28 AVKKICFCPVTGTL-LIAGTAGHVILAKLS 56 (137)
Q Consensus 28 AIq~I~lCpeSr~L-~VaG~sG~Vil~~f~ 56 (137)
+|.-+.|.|....| ++++..|.|.+|++.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~ 133 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVD 133 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECc
Confidence 59999999999997 778889999999998
No 98
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=64.82 E-value=6.2 Score=31.76 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=27.0
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEec
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLS 56 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~ 56 (137)
-.|..|+|.|..++|++|+..|.|.||+..
T Consensus 509 ~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 509 SSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 368899999999999999999999999853
No 99
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=64.66 E-value=12 Score=29.45 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=29.7
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|.-+.|.|....|++|+..|.|.+|++....
T Consensus 193 ~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~ 225 (410)
T 1vyh_C 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225 (410)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 368999999999999999999999999987654
No 100
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=64.32 E-value=8.1 Score=31.47 Aligned_cols=33 Identities=9% Similarity=0.203 Sum_probs=29.0
Q ss_pred ceEEEEEeecC-CCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPV-TGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpe-Sr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..|.|+|. ..+|++++..|.|.+|.++...
T Consensus 150 ~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~ 183 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV 183 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence 46999999998 7789999999999999998654
No 101
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=63.68 E-value=8.1 Score=32.76 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=27.2
Q ss_pred eEEEEEeecC------CCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPV------TGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpe------Sr~L~VaG~sG~Vil~~f~~~e 59 (137)
+|..|.|||. .++|+.|+..|.|.||++...+
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence 4788999996 4789999999999999997553
No 102
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=63.16 E-value=8.3 Score=29.82 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=29.4
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|.-|.|.|....|++++..|.|.+|.++...
T Consensus 241 ~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~ 273 (354)
T 2pbi_B 241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADR 273 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 368899999999999999999999999997654
No 103
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=62.98 E-value=8.9 Score=30.35 Aligned_cols=32 Identities=3% Similarity=0.045 Sum_probs=27.7
Q ss_pred ceEEEEEeec-CCCeEEEecccceEEEEEecCC
Q psy6173 27 LAVKKICFCP-VTGTLLIAGTAGHVILAKLSTK 58 (137)
Q Consensus 27 lAIq~I~lCp-eSr~L~VaG~sG~Vil~~f~~~ 58 (137)
-.|..|.|+| ....|++++..|.|.+|+++..
T Consensus 232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 3589999999 6778888889999999999865
No 104
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=62.44 E-value=11 Score=29.43 Aligned_cols=33 Identities=6% Similarity=-0.037 Sum_probs=29.5
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|..+.|.|....|++++..|.|.+|.+...+
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 468899999999999999999999999997655
No 105
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=60.72 E-value=9.6 Score=31.95 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=29.7
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|.-++|.|..++|+.|+..|.|.+|++++.+
T Consensus 537 ~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 537 AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred cceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 468999999999999999999999999997644
No 106
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=60.29 E-value=13 Score=31.04 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=29.1
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|.-+.|.|...+|+.|+..|.|.+|++...+
T Consensus 241 ~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 241 SVFGLTWSPDGTKIASASADKTIKIWNVATLK 272 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 68999999999999999999999999987544
No 107
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=59.60 E-value=14 Score=31.28 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=29.4
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|.-+.|.|..+.|++++..|.|.||++....
T Consensus 431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~ 463 (694)
T 3dm0_A 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV 463 (694)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 358889999999999999999999999997655
No 108
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=59.60 E-value=9.9 Score=30.08 Aligned_cols=32 Identities=3% Similarity=0.118 Sum_probs=28.2
Q ss_pred eEEEEEeecCCC-eEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTG-TLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr-~L~VaG~sG~Vil~~f~~~e 59 (137)
.|..++|+|... .|+.++..|.|.+|++++..
T Consensus 380 ~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 380 KISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred CceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 589999999998 88899999999999997544
No 109
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=59.58 E-value=24 Score=27.47 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=27.2
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|.-+.|.|+ +.|++|+..|.|.||+++..+
T Consensus 84 ~v~~~~~s~d-~~l~~~s~dg~v~lWd~~~~~ 114 (344)
T 4gqb_B 84 GVADLTWVGE-RGILVASDSGAVELWELDENE 114 (344)
T ss_dssp CEEEEEEETT-TEEEEEETTSEEEEEEECTTS
T ss_pred CEEEEEEeCC-CeEEEEECCCEEEEEeccCCC
Confidence 4888999997 678899999999999998765
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=58.62 E-value=13 Score=28.54 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=26.1
Q ss_pred eEEEEEeecCCCeEEEecc-cceEEEEEecC
Q psy6173 28 AVKKICFCPVTGTLLIAGT-AGHVILAKLST 57 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~-sG~Vil~~f~~ 57 (137)
.+..+.|.|..+.|++++. .|.|.+|+++.
T Consensus 402 ~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 402 QPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 4678899999999999986 99999999863
No 111
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=58.38 E-value=13 Score=29.04 Aligned_cols=32 Identities=13% Similarity=0.023 Sum_probs=27.8
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-+|..+.|+|.. .|++|+..|.|.+|+++..+
T Consensus 163 ~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~ 194 (464)
T 3v7d_B 163 GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC 194 (464)
T ss_dssp SCEEEEEECSTT-EEEEEETTSCEEEEETTTTE
T ss_pred cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc
Confidence 478889998877 99999999999999997655
No 112
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=57.07 E-value=10 Score=29.75 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=27.7
Q ss_pred eEEEEEeec--------CCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCP--------VTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCp--------eSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|.-|.|+| +..+|+.||..+.|.||+++...
T Consensus 138 ~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~ 177 (393)
T 4gq1_A 138 FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG 177 (393)
T ss_dssp CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred ceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence 489999998 56799999999999999997654
No 113
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=56.41 E-value=17 Score=32.62 Aligned_cols=33 Identities=12% Similarity=0.005 Sum_probs=29.6
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-.|.-+.|+|..+.|++++..|+|.+|++....
T Consensus 658 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~ 690 (1249)
T 3sfz_A 658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGK 690 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Confidence 468899999999999999999999999987654
No 114
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=55.33 E-value=15 Score=33.00 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=30.2
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-+|..++|.|..+.|++||..|.|.+|++...+
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~ 648 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGE 648 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Confidence 468999999999999999999999999998766
No 115
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=54.45 E-value=17 Score=26.67 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=24.5
Q ss_pred EEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 29 VKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 29 Iq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
+..++|.|..++|.+++..|.|.+|+....+
T Consensus 297 ~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 297 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp CCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred ccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 3457788888888888888999998876555
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=54.22 E-value=22 Score=26.81 Aligned_cols=32 Identities=6% Similarity=0.200 Sum_probs=27.0
Q ss_pred eEEEEEeecCCCeEEEecc-cceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGT-AGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~-sG~Vil~~f~~~e 59 (137)
.|..+.|.|..+.|+++|. .|.|.+|.....+
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~ 107 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT 107 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCe
Confidence 6788999999999988875 4999999987655
No 117
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=53.33 E-value=15 Score=31.07 Aligned_cols=30 Identities=13% Similarity=0.115 Sum_probs=26.0
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
.+..+.|.|..++|++++..|.|.+|.+++
T Consensus 664 ~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 664 YCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 477889999999999999999999998864
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=52.82 E-value=11 Score=32.80 Aligned_cols=31 Identities=3% Similarity=-0.018 Sum_probs=28.4
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
-.|.-+.|.|...+|++||..|.|.+|.+..
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~ 40 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEG 40 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEET
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCC
Confidence 3689999999999999999999999999874
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=50.96 E-value=17 Score=31.59 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=28.8
Q ss_pred ceEEEEEeecC---CCeEEEecccceEEEEEecCC
Q psy6173 27 LAVKKICFCPV---TGTLLIAGTAGHVILAKLSTK 58 (137)
Q Consensus 27 lAIq~I~lCpe---Sr~L~VaG~sG~Vil~~f~~~ 58 (137)
-.|..|.|+|. ...|+++|..|.|.+|.++..
T Consensus 205 ~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 205 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 35888999999 899999999999999999875
No 120
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=50.29 E-value=38 Score=25.23 Aligned_cols=30 Identities=7% Similarity=0.113 Sum_probs=24.8
Q ss_pred EEEEEeecCCCeEEEeccc-ceEEEEEecCC
Q psy6173 29 VKKICFCPVTGTLLIAGTA-GHVILAKLSTK 58 (137)
Q Consensus 29 Iq~I~lCpeSr~L~VaG~s-G~Vil~~f~~~ 58 (137)
+..|+|.|..++|+|++.. +.|.+|+++.+
T Consensus 288 ~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~ 318 (347)
T 3hfq_A 288 PRDFDLDPTEAFVVVVNQNTDNATLYARDLT 318 (347)
T ss_dssp CCEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cCeEEECCCCCEEEEEEcCCCcEEEEEEeCC
Confidence 3567899999999999875 89999998643
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=49.64 E-value=19 Score=28.23 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=26.5
Q ss_pred eEEEEEeecCC-CeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVT-GTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeS-r~L~VaG~sG~Vil~~f~~~e 59 (137)
.|.-++|+|.. .+|++++..|.|.+|++....
T Consensus 188 ~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 188 PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL 220 (393)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred CcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence 46678999986 479999999999999987554
No 122
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=48.37 E-value=16 Score=32.88 Aligned_cols=32 Identities=19% Similarity=0.078 Sum_probs=28.4
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|.-|+|.|..++|++|+..|.|.||.....+
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~ 50 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE 50 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE
Confidence 68999999999999999999999999776544
No 123
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=47.95 E-value=14 Score=26.99 Aligned_cols=29 Identities=14% Similarity=0.207 Sum_probs=25.0
Q ss_pred eEEEEEeecCCCeEEEeccc-ceEEEEEec
Q psy6173 28 AVKKICFCPVTGTLLIAGTA-GHVILAKLS 56 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~s-G~Vil~~f~ 56 (137)
.+..++|.|..+.|++++.. |.|.+|.++
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~ 68 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 68 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEec
Confidence 34568899999999999987 999999997
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=46.83 E-value=37 Score=25.95 Aligned_cols=32 Identities=19% Similarity=0.046 Sum_probs=27.1
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|..+.|.|..+.|+.++..|.|.+|++...+
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 67888998888888888888999999987654
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=46.55 E-value=35 Score=25.74 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=25.9
Q ss_pred eEEEEEeecCCCeEEEec-ccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAG-TAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG-~sG~Vil~~f~~~e 59 (137)
.+.-+.|.|..+.|.++| ..|.|.+|++...+
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~ 65 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCe
Confidence 467889999999885554 88999999987655
No 126
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=45.95 E-value=21 Score=26.89 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=24.8
Q ss_pred EEEEEeecCCCeEEEec-ccceEEEEEecCCC
Q psy6173 29 VKKICFCPVTGTLLIAG-TAGHVILAKLSTKT 59 (137)
Q Consensus 29 Iq~I~lCpeSr~L~VaG-~sG~Vil~~f~~~e 59 (137)
+..++|.|..++|++++ .++.|.+|+++.+.
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence 34678999999999998 57999999987433
No 127
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=43.83 E-value=57 Score=23.59 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=24.6
Q ss_pred EEEEEeecCCCeEEEec-ccceEEEEEecCCC
Q psy6173 29 VKKICFCPVTGTLLIAG-TAGHVILAKLSTKT 59 (137)
Q Consensus 29 Iq~I~lCpeSr~L~VaG-~sG~Vil~~f~~~e 59 (137)
+..++|.|..+.|++++ ..|.|.+|+++...
T Consensus 279 ~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 279 PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ 310 (343)
T ss_dssp CCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred cceEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 34578899999899998 57999999887543
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=43.51 E-value=33 Score=23.99 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=25.8
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecC-CC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLST-KT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~-~e 59 (137)
.|.-+.|.|..++|++++ .|.|.+|.+.. .+
T Consensus 43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~ 74 (297)
T 2ojh_A 43 LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS 74 (297)
T ss_dssp CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS
T ss_pred ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC
Confidence 577889999999888876 78999999877 44
No 129
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=41.75 E-value=13 Score=30.95 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=33.6
Q ss_pred cccccccCCCCCCccce-EEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173 12 NLNVGCFDPYSDDPRLA-VKKICFCPVTGTLLIAGTAGHVILAKLST 57 (137)
Q Consensus 12 frkvG~~DP~sDDprlA-Iq~I~lCpeSr~L~VaG~sG~Vil~~f~~ 57 (137)
-.|+-.|++|.|+-++. +..+++-+.-|.|++||..|-++ ++..+
T Consensus 22 l~~~~~~~~~~~~l~~~~~nlLais~~~gll~a~~~~~l~v-~~~~~ 67 (388)
T 1xip_A 22 LGQKQILPSFNEKLPFASLQNLDISNSKSLFVAASGSKAVV-GELQL 67 (388)
T ss_dssp EEEEECSCCCTTCCCSSCCBCEEEETTTTEEEEEETTEEEE-EEHHH
T ss_pred CCccccccCccccCCcccccEEEEcCCCCEEEEeCCCEEEE-EEhhH
Confidence 34555677876544454 99999999999999999886665 88653
No 130
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=40.85 E-value=80 Score=23.03 Aligned_cols=35 Identities=9% Similarity=0.103 Sum_probs=28.0
Q ss_pred ccceEEEEEeecCCCeEEEeccc-ceEEEEEecCCC
Q psy6173 25 PRLAVKKICFCPVTGTLLIAGTA-GHVILAKLSTKT 59 (137)
Q Consensus 25 prlAIq~I~lCpeSr~L~VaG~s-G~Vil~~f~~~e 59 (137)
++..+.-|.|-|..++|.+++.. ++|.+|.....+
T Consensus 229 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 229 KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 34566778999999988888766 999999886655
No 131
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=40.85 E-value=70 Score=23.75 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=24.8
Q ss_pred EEEEeecCCCeEEEec-ccceEEEEEecCCC
Q psy6173 30 KKICFCPVTGTLLIAG-TAGHVILAKLSTKT 59 (137)
Q Consensus 30 q~I~lCpeSr~L~VaG-~sG~Vil~~f~~~e 59 (137)
.-|+|.|..++|++++ .+|.|.+|+++...
T Consensus 89 ~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g 119 (347)
T 3hfq_A 89 AYVAVDEARQLVYSANYHKGTAEVMKIAADG 119 (347)
T ss_dssp SEEEEETTTTEEEEEETTTTEEEEEEECTTS
T ss_pred EEEEECCCCCEEEEEeCCCCEEEEEEeCCCC
Confidence 4578899999999998 67999999997543
No 132
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=38.27 E-value=46 Score=25.95 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=20.7
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
.|..+.+ ....|++|+..|.|.+|++...+
T Consensus 175 ~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 175 SVLCLQY--DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred cEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence 4554545 56777888888888888876554
No 133
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=37.43 E-value=53 Score=25.54 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=25.9
Q ss_pred ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-+|..+.|. .+.|++++..|.|.+|++...+
T Consensus 363 ~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 363 SAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp SCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc
Confidence 467777775 6899999999999999998766
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=35.57 E-value=47 Score=24.31 Aligned_cols=31 Identities=10% Similarity=0.140 Sum_probs=26.0
Q ss_pred EEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 29 VKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 29 Iq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
+..+.|.|..++|.++...|.|.+|.....+
T Consensus 187 ~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~ 217 (353)
T 3vgz_A 187 STGLALDSEGKRLYTTNADGELITIDTADNK 217 (353)
T ss_dssp CCCCEEETTTTEEEEECTTSEEEEEETTTTE
T ss_pred cceEEECCCCCEEEEEcCCCeEEEEECCCCe
Confidence 3456799999999999999999999876555
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=33.88 E-value=34 Score=25.06 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=27.0
Q ss_pred CccceEEEEEeecCCCeEEEecc-cceEEEEEecCCC
Q psy6173 24 DPRLAVKKICFCPVTGTLLIAGT-AGHVILAKLSTKT 59 (137)
Q Consensus 24 DprlAIq~I~lCpeSr~L~VaG~-sG~Vil~~f~~~e 59 (137)
.+..+...+.|.|..++|.+++. +|.|.+|+++...
T Consensus 270 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 270 RPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 34455566899999999987766 5689999987544
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=33.04 E-value=66 Score=26.99 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=26.2
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEec
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLS 56 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~ 56 (137)
++..+.+-|..++|.|++..|.|.+|+++
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECc
Confidence 36778899999999999999999999994
No 137
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=32.94 E-value=24 Score=25.25 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=11.3
Q ss_pred CCCccceE-------EEEEeecCC
Q psy6173 22 SDDPRLAV-------KKICFCPVT 38 (137)
Q Consensus 22 sDDprlAI-------q~I~lCpeS 38 (137)
+++||+++ -.|+|||++
T Consensus 76 ~~~prY~~y~dg~k~vFI~w~Pd~ 99 (139)
T 2l72_A 76 ANDCRFGVYDCGNKIQFVLWCPDN 99 (139)
T ss_dssp CCSCCEEEEECSSCEEEEEECCTT
T ss_pred CCCcEEEEEcCCCcEEEEEECCCC
Confidence 46677766 457777775
No 138
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=32.75 E-value=70 Score=24.88 Aligned_cols=30 Identities=20% Similarity=0.106 Sum_probs=24.9
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
+|..+.+ ....|++|+..|.|.+|.++..+
T Consensus 258 ~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~ 287 (435)
T 1p22_A 258 AVNVVDF--DDKYIVSASGDRTIKVWNTSTCE 287 (435)
T ss_dssp CEEEEEE--ETTEEEEEETTSEEEEEETTTCC
T ss_pred cEEEEEe--CCCEEEEEeCCCeEEEEECCcCc
Confidence 5666666 68899999999999999988765
No 139
>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=32.31 E-value=18 Score=24.78 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=14.9
Q ss_pred CCCCCCCcccccccCCCC
Q psy6173 5 GPRSESLNLNVGCFDPYS 22 (137)
Q Consensus 5 ~~~~~~PfrkvG~~DP~s 22 (137)
-+|+.++.-+||.|||-.
T Consensus 26 ~~RDGr~IE~lG~YnP~~ 43 (88)
T 3bbn_P 26 SRREGRDLQKVGFYDPIK 43 (88)
T ss_dssp SCSSSCCSSCCCCBCTTS
T ss_pred CCCCCCcEeEEEeccCCC
Confidence 367888889999999963
No 140
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=31.79 E-value=76 Score=22.85 Aligned_cols=30 Identities=7% Similarity=0.156 Sum_probs=22.3
Q ss_pred EEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 29 VKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 29 Iq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
+.-|++.|. |.|.|+...+.|.+|++....
T Consensus 253 ~~~i~~~~~-g~l~vs~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 253 CFDVALMDD-GSVVLASKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEEEEETT-TEEEEEETTTEEEEEECSCCC
T ss_pred ceeEEECCC-CcEEEECCCCeEEEEEccccc
Confidence 456778885 567777778899999986543
No 141
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=31.65 E-value=23 Score=23.99 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.1
Q ss_pred CCCCCCCcccccccCCCC
Q psy6173 5 GPRSESLNLNVGCFDPYS 22 (137)
Q Consensus 5 ~~~~~~PfrkvG~~DP~s 22 (137)
-+|+.++.-++|.|||-.
T Consensus 26 ~~RdGr~IE~lG~YnP~~ 43 (83)
T 3pys_P 26 RKRDGKYIEKIGYYDPRK 43 (83)
T ss_dssp SCTTCCCSEECCCBCSSC
T ss_pred CCCCCCceeeeeEEcCCC
Confidence 367788888999999976
No 142
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=31.56 E-value=63 Score=24.24 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=25.9
Q ss_pred eEEEEEeecCCCeEEEec-ccceEEEEEecCC
Q psy6173 28 AVKKICFCPVTGTLLIAG-TAGHVILAKLSTK 58 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG-~sG~Vil~~f~~~ 58 (137)
....+.|.|..+.|.+++ .++.|.+|++...
T Consensus 212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 456789999999998888 5899999999743
No 143
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A
Probab=30.15 E-value=27 Score=25.29 Aligned_cols=12 Identities=25% Similarity=0.180 Sum_probs=7.6
Q ss_pred ceEEEEEeecCC
Q psy6173 27 LAVKKICFCPVT 38 (137)
Q Consensus 27 lAIq~I~lCpeS 38 (137)
--+-.|+|||++
T Consensus 96 ~klvFI~w~P~~ 107 (154)
T 1vkk_A 96 YPLCFIFSSPVG 107 (154)
T ss_dssp CCEEEEEECCTT
T ss_pred ccEEEEEECCCC
Confidence 344567777775
No 144
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7
Probab=30.00 E-value=48 Score=26.47 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=20.5
Q ss_pred cccccCCCCCCccceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173 14 NVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 14 kvG~~DP~sDDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e 59 (137)
-++-||| +|+.|.+. +.|++||+|+...
T Consensus 26 VL~RyDP-------~IkqIL~~-----------t~hasvYkfd~~~ 53 (231)
T 1q67_A 26 VIGRYDP-------KIKQLLFH-----------TPHASLYKWDFKK 53 (231)
T ss_dssp HHHHHCT-------TEEEEEEE-----------EEEEEEEEEETTT
T ss_pred HHHhhCh-------hHHHHHhc-----------CCeEEEEEecCCC
Confidence 3778888 46666543 5799999998664
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=29.84 E-value=1.2e+02 Score=21.96 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=25.9
Q ss_pred eEEEEEeecCCCeEEEecc-cceEEEEEecCCC
Q psy6173 28 AVKKICFCPVTGTLLIAGT-AGHVILAKLSTKT 59 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~-sG~Vil~~f~~~e 59 (137)
....+.|.|..++|.+++. .+.|.+|++...+
T Consensus 177 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 177 RPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209 (331)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred CccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 3577889999998877774 7899999987666
No 146
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=29.83 E-value=62 Score=23.54 Aligned_cols=30 Identities=3% Similarity=0.004 Sum_probs=25.2
Q ss_pred EEEEEeecCCCeEEEeccc------------ceEEEEEecCC
Q psy6173 29 VKKICFCPVTGTLLIAGTA------------GHVILAKLSTK 58 (137)
Q Consensus 29 Iq~I~lCpeSr~L~VaG~s------------G~Vil~~f~~~ 58 (137)
+..+.|.|..++|++++.. ++|.+|.+...
T Consensus 94 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 135 (349)
T 1jmx_B 94 MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG 135 (349)
T ss_dssp SSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred ccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc
Confidence 4567899999999999976 99999998763
No 147
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=29.15 E-value=1.7e+02 Score=21.54 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=31.8
Q ss_pred CcccccccCCCCCCcc-c----eEEEEEeecCCCeEEEeccc------ceEEEEEecCC
Q psy6173 11 LNLNVGCFDPYSDDPR-L----AVKKICFCPVTGTLLIAGTA------GHVILAKLSTK 58 (137)
Q Consensus 11 PfrkvG~~DP~sDDpr-l----AIq~I~lCpeSr~L~VaG~s------G~Vil~~f~~~ 58 (137)
+...|-.+||-....+ + ...-|+|.|..++|.|+.+. +.|.+|.....
T Consensus 167 ~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 167 AHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp SCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred CCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 3456777787433321 1 12457899999999999876 67888877643
No 148
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2
Probab=28.78 E-value=31 Score=24.28 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=6.7
Q ss_pred CCCccceEEE
Q psy6173 22 SDDPRLAVKK 31 (137)
Q Consensus 22 sDDprlAIq~ 31 (137)
+++||+|+=.
T Consensus 63 ~~~~rY~~~~ 72 (142)
T 1m4j_A 63 DKQPCYVLFR 72 (142)
T ss_dssp TTCCEEEEEE
T ss_pred CCCceEEEEE
Confidence 5678877733
No 149
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei}
Probab=28.69 E-value=30 Score=24.60 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=4.6
Q ss_pred EEEeecCC
Q psy6173 31 KICFCPVT 38 (137)
Q Consensus 31 ~I~lCpeS 38 (137)
.|+|||++
T Consensus 90 fI~w~Pd~ 97 (144)
T 2lj8_A 90 LISWNPDS 97 (144)
T ss_dssp EEEECCTT
T ss_pred EEEEcCCC
Confidence 45566654
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=28.02 E-value=94 Score=21.52 Aligned_cols=30 Identities=3% Similarity=-0.117 Sum_probs=24.0
Q ss_pred EEEEEeecCCCeEE-EecccceEEEEEecCC
Q psy6173 29 VKKICFCPVTGTLL-IAGTAGHVILAKLSTK 58 (137)
Q Consensus 29 Iq~I~lCpeSr~L~-VaG~sG~Vil~~f~~~ 58 (137)
+..+.|.|..+.|+ +++..|.+-||.++..
T Consensus 131 ~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 131 SYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp EEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred ccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 67788999999888 5667898888887543
No 151
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens}
Probab=27.96 E-value=33 Score=23.89 Aligned_cols=11 Identities=9% Similarity=0.374 Sum_probs=7.1
Q ss_pred CCCccceEEEE
Q psy6173 22 SDDPRLAVKKI 32 (137)
Q Consensus 22 sDDprlAIq~I 32 (137)
+++||+|+=..
T Consensus 60 ~~~prY~v~~~ 70 (134)
T 2vac_A 60 AQQPCYLLYRL 70 (134)
T ss_dssp TTCCEEEEEEE
T ss_pred CCCCEEEEEEC
Confidence 56788877433
No 152
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=27.37 E-value=18 Score=24.50 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=15.1
Q ss_pred CCCCCCCcccccccCCCCC
Q psy6173 5 GPRSESLNLNVGCFDPYSD 23 (137)
Q Consensus 5 ~~~~~~PfrkvG~~DP~sD 23 (137)
-+|+.++.-++|.|||-.+
T Consensus 26 ~~RdGr~IE~lG~YnP~~~ 44 (82)
T 3r8n_P 26 NARNGRFIERVGFFNPIAS 44 (82)
T ss_dssp SCTTSCEEEEEEEECTTCC
T ss_pred CCCCCCceeeeeEEcCCCC
Confidence 3677788888999999754
No 153
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=26.63 E-value=47 Score=27.98 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=26.1
Q ss_pred ceEEEEEeecCC---CeEEEecccceEEEEEecCCC
Q psy6173 27 LAVKKICFCPVT---GTLLIAGTAGHVILAKLSTKT 59 (137)
Q Consensus 27 lAIq~I~lCpeS---r~L~VaG~sG~Vil~~f~~~e 59 (137)
-+|..++|.|.. ..|+.|+.+|-|-|++|.-+-
T Consensus 484 ~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 484 INITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp CSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred ceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 467788999995 377777777999999997654
No 154
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Probab=26.24 E-value=35 Score=24.38 Aligned_cols=11 Identities=27% Similarity=0.196 Sum_probs=7.1
Q ss_pred eEEEEEeecCC
Q psy6173 28 AVKKICFCPVT 38 (137)
Q Consensus 28 AIq~I~lCpeS 38 (137)
-+-.|+|||++
T Consensus 91 k~vfI~w~P~~ 101 (151)
T 1v6f_A 91 PLCFIFSSPVG 101 (151)
T ss_dssp CEEEEEECCTT
T ss_pred cEEEEEECCCC
Confidence 34567777775
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=26.02 E-value=99 Score=22.19 Aligned_cols=30 Identities=23% Similarity=0.133 Sum_probs=23.7
Q ss_pred EEEEeecCCCeEEEec------------ccceEEEEEecCCC
Q psy6173 30 KKICFCPVTGTLLIAG------------TAGHVILAKLSTKT 59 (137)
Q Consensus 30 q~I~lCpeSr~L~VaG------------~sG~Vil~~f~~~e 59 (137)
..+.|.|..+.|++++ ..++|.+|.....+
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 126 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS 126 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc
Confidence 3478899999999996 46999999986544
No 156
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani}
Probab=24.76 E-value=41 Score=23.83 Aligned_cols=8 Identities=13% Similarity=0.430 Sum_probs=5.2
Q ss_pred CCCccceE
Q psy6173 22 SDDPRLAV 29 (137)
Q Consensus 22 sDDprlAI 29 (137)
+++||+|+
T Consensus 59 ~~~prY~~ 66 (144)
T 2kvk_A 59 TEKPCYVA 66 (144)
T ss_dssp TTSCCEEE
T ss_pred ccCceEEE
Confidence 46677765
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=23.45 E-value=1.1e+02 Score=23.22 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=25.1
Q ss_pred eEEEEE-eecCCCeEEEecccc------eEEEEEecC
Q psy6173 28 AVKKIC-FCPVTGTLLIAGTAG------HVILAKLST 57 (137)
Q Consensus 28 AIq~I~-lCpeSr~L~VaG~sG------~Vil~~f~~ 57 (137)
.+..|. |.|..+.|.+++.++ .|.+|+++.
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~ 291 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC
Confidence 577888 999999999988765 799999974
No 158
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=23.39 E-value=1.2e+02 Score=25.90 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=25.9
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEEec
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAKLS 56 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~ 56 (137)
+++.+.|-|..++|.|++..|.|.+|++.
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 45678899999999999999999999995
No 159
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1
Probab=22.73 E-value=24 Score=25.24 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=10.3
Q ss_pred CCCCCCCcccccccCCC
Q psy6173 5 GPRSESLNLNVGCFDPY 21 (137)
Q Consensus 5 ~~~~~~PfrkvG~~DP~ 21 (137)
-+|+.++.-+||.|||-
T Consensus 27 ~~RDGr~IE~lG~YnP~ 43 (112)
T 3bn0_A 27 SPREGKYIDILGTYDPK 43 (112)
T ss_dssp ------CSEEEEEEETT
T ss_pred CCCCCCCEeEeeeccCC
Confidence 36778888899999997
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=22.10 E-value=1.2e+02 Score=23.05 Aligned_cols=30 Identities=7% Similarity=0.048 Sum_probs=24.9
Q ss_pred eEEEEEeecCCCeEEEecc-cceEEEEEecC
Q psy6173 28 AVKKICFCPVTGTLLIAGT-AGHVILAKLST 57 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~-sG~Vil~~f~~ 57 (137)
.+..+.|-|..+.|.+++. ++.|.+|+++.
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence 3567889999999999886 68999998864
No 161
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=22.08 E-value=80 Score=28.08 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=26.0
Q ss_pred eEEEEEeecCCCeEEEecccceEEEEE
Q psy6173 28 AVKKICFCPVTGTLLIAGTAGHVILAK 54 (137)
Q Consensus 28 AIq~I~lCpeSr~L~VaG~sG~Vil~~ 54 (137)
.|.-++|-|...+|++++.+|.|.+|+
T Consensus 87 ~V~~vawSPdG~~LAs~s~dg~V~iwd 113 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLSNNGNVSVFK 113 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 599999999999999999999999998
No 162
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4
Probab=21.75 E-value=35 Score=27.13 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=11.8
Q ss_pred CcceeEEEeecccc
Q psy6173 122 PAAVTSLVLHTEWG 135 (137)
Q Consensus 122 P~~ITsLal~SsyG 135 (137)
|..--+|||||.||
T Consensus 96 pd~~lsLaINS~~g 109 (227)
T 2pof_A 96 PDRAVSLAINSRTG 109 (227)
T ss_dssp CGGGEEEEEBCGGG
T ss_pred CccceEEEecCCCC
Confidence 55667999999998
No 163
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2
Probab=21.42 E-value=50 Score=22.98 Aligned_cols=10 Identities=30% Similarity=0.740 Sum_probs=5.8
Q ss_pred EEEEEeecCC
Q psy6173 29 VKKICFCPVT 38 (137)
Q Consensus 29 Iq~I~lCpeS 38 (137)
+-.|+|||++
T Consensus 81 ~vfI~w~Pd~ 90 (141)
T 1hqz_1 81 IIIIGWCPDS 90 (141)
T ss_dssp EEEEEECCTT
T ss_pred EEEEEECCCC
Confidence 3445666665
No 164
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=20.75 E-value=30 Score=24.83 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=9.3
Q ss_pred cccceEEEEEecCCC
Q psy6173 45 GTAGHVILAKLSTKT 59 (137)
Q Consensus 45 G~sG~Vil~~f~~~e 59 (137)
.+++||+||+|+...
T Consensus 28 ~~a~~v~vY~f~~~~ 42 (127)
T 2qkl_A 28 DIASHVAVYQFDVGS 42 (127)
T ss_dssp EEEEEEEEECC----
T ss_pred ccCCeEEEEEecCCC
Confidence 346899999999653
No 165
>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}
Probab=25.23 E-value=22 Score=25.56 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=27.9
Q ss_pred CcccccccCCCCCCccceEEEEEeecCCCeEEEecccceE
Q psy6173 11 LNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHV 50 (137)
Q Consensus 11 PfrkvG~~DP~sDDprlAIq~I~lCpeSr~L~VaG~sG~V 50 (137)
-|+|||.-||- ++..++++.+ +....+.++|..|++
T Consensus 4 ~~~~~~~~~~~---~~m~~~~~~~-~yg~Ll~~GGiiGY~ 39 (121)
T 2los_A 4 LYKKVGMQDTS---SVVPLHWFGF-GYAALVASGGIIGYV 39 (121)
Confidence 47899999985 4456666665 478888999999987
Done!