RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6173
         (137 letters)



>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
           complex; 2.40A {Saccharomyces cerevisiae}
          Length = 902

 Score = 68.4 bits (166), Expect = 1e-14
 Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 10/132 (7%)

Query: 4   SGPRSESLNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDV 63
            G   ++ +  V      +    LAV KI F   T  L ++   G V+L K        V
Sbjct: 466 HGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSV 525

Query: 64  TVKISTMNIVSDRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPA 123
               +         +F             D +D+ P+      V  GF P+  V  +   
Sbjct: 526 E---NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG-----VRQGFMPSTAVHAN-KG 576

Query: 124 AVTSLVLHTEWG 135
             +++  ++  G
Sbjct: 577 KTSAIN-NSNIG 587


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 33.0 bits (74), Expect = 0.014
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 13/31 (41%)

Query: 2  KMSGPRSESLNLNVGCFDPYSDD--PRLAVK 30
          K+      SL L       Y+DD  P LA+K
Sbjct: 24 KLQA----SLKL-------YADDSAPALAIK 43



 Score = 26.1 bits (56), Expect = 3.3
 Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 7/33 (21%)

Query: 96  DKEPSKAL---LKSVSPGFQPTCLVQLHPPAAV 125
           +K+  K L   LK  +    P   ++    A +
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAIK----ATM 46


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.6 bits (66), Expect = 0.32
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 12/92 (13%)

Query: 19  DPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVSDRDS 78
           +P        V  +C        L  G   H + AKL  +  T +   + T  ++    +
Sbjct: 73  EPSKVGQFDQVLNLCLTEFENCYL-EGNDIHALAAKLLQENDTTL---VKTKELIK---N 125

Query: 79  FVWKGHARLGVKHTDSKDKEPSKALLKSVSPG 110
           ++    AR+  K    K K  S AL ++V  G
Sbjct: 126 YI---TARIMAKRPFDK-KSNS-ALFRAVGEG 152


>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
           1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
          Length = 350

 Score = 28.4 bits (64), Expect = 0.65
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 14/57 (24%)

Query: 12  NLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHV--ILAKLSTKTSTDVTVK 66
           NLN+GC  P S+      ++  +    G  L+      V  IL  +       VTVK
Sbjct: 88  NLNLGC--P-SE----KAQEGGY----GACLLL-DLARVREILKAMGEAVRVPVTVK 132


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.132    0.403 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,916,930
Number of extensions: 98023
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 6
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)