RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6173
         (137 letters)



>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 470

 Score = 29.7 bits (66), Expect = 0.12
 Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 1/57 (1%)

Query: 82  KGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSL-VLHTEWGEY 137
           +G   +  K            +  +V PG Q           AV     +  E+ EY
Sbjct: 257 RGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEY 313


>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase
          (Pantoate-beta-alanine ligase, PanC) {Mycobacterium
          tuberculosis [TaxId: 1773]}
          Length = 286

 Score = 27.5 bits (60), Expect = 0.60
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 4/45 (8%)

Query: 21 YSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTV 65
           S   RL  +++   P  G L      GH+ L + + +    V V
Sbjct: 21 VSRALRLTGRRVMLVPTMGAL----HEGHLALVRAAKRVPGSVVV 61


>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
           (G) domain {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 341

 Score = 24.7 bits (53), Expect = 5.3
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 71  NIVSDRDSFVWKGHARLGVK-HTDSKDKEPSKALLKSV 107
            I++ +   +     +L +    D KD E  KALLK V
Sbjct: 285 AIMNFKKDEIPVLLEKLEIVLKGDEKDLEG-KALLKVV 321


>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 311

 Score = 24.4 bits (52), Expect = 5.8
 Identities = 6/33 (18%), Positives = 12/33 (36%)

Query: 45 GTAGHVILAKLSTKTSTDVTVKISTMNIVSDRD 77
          G  G V    L       +   + ++N ++D  
Sbjct: 38 GHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.403 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 462,738
Number of extensions: 17257
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 4
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.8 bits)