Query psy6174
Match_columns 174
No_of_seqs 9 out of 11
Neff 1.6
Searched_HMMs 29240
Date Fri Aug 16 19:36:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uv1_A DER F 7 allergen; super 97.5 0.0003 1E-08 53.2 7.8 91 21-113 58-152 (196)
2 3h4z_A Maltose-binding peripla 80.6 4.1 0.00014 34.7 6.7 88 21-113 428-522 (568)
3 1e5p_A Aphrodisin; lipocalin, 36.8 37 0.0013 23.1 3.6 29 118-146 103-133 (151)
4 4gb3_1 Coat protein 1; capsid 30.4 41 0.0014 28.4 3.6 36 77-112 207-245 (281)
5 1dzk_A PIG OBP, odorant-bindin 29.5 41 0.0014 22.9 2.8 29 118-146 109-139 (157)
6 1bj7_A D 2; allergen, lipocali 26.6 68 0.0023 21.9 3.6 29 118-146 108-138 (156)
7 2hlv_A Odorant-binding protein 25.7 46 0.0016 22.9 2.6 29 118-146 110-140 (160)
8 3aw5_A Multicopper oxidase; be 25.6 66 0.0023 26.8 4.0 21 83-103 186-206 (448)
9 2uxt_A Protein SUFI, SUFI; oxi 20.7 82 0.0028 26.2 3.6 21 83-103 199-219 (451)
10 2g3b_A Putative TETR-family tr 19.9 51 0.0017 22.7 1.9 30 137-166 178-207 (208)
No 1
>3uv1_A DER F 7 allergen; super-roll; 2.00A {Dermatophagoides farinae}
Probab=97.54 E-value=0.0003 Score=53.20 Aligned_cols=91 Identities=21% Similarity=0.292 Sum_probs=60.8
Q ss_pred ceeeecceeeeecCceEEEEecCcceEEeeeeec--ceeEeee--hhhcchhhhhhhhcccccceeeeeeEEEEeeCCce
Q psy6174 21 KATLLGLSTLRRDGDVTVNVMSAHTTVKAKFFVG--PLMLKVE--KEFGRGVKKELRSATATTAEMMGKINLRVMHGGQA 96 (174)
Q Consensus 21 kaTLyGLsSLkR~gdV~Vn~m~~hTTvK~kF~~G--PL~LkVE--KefgrgakkelrSATAtT~EM~Gkl~lrv~~gg~A 96 (174)
.|+++||||++|.||+++.+.. .++.+...+| =+.+... =+.+.|.-.--=.++++...+..++.+.+--+|..
T Consensus 58 ng~l~GLSs~~R~Gd~~~~~~~--~~~~~~~~vg~~~~~v~~~y~~~~~~~~~~~~g~v~~~i~~~~v~~~~~~~~~~~~ 135 (196)
T 3uv1_A 58 NIEARGLKQMKRQGDANVKGEE--GIVKAHLLIGVHDDIVSMEYDLAYKLGDLHPTTHVISDIQDFVVALSLEIPDEGNI 135 (196)
T ss_dssp EEEEECGGGEEESSSCEEEEET--TEEEEEEEEEESSSCEEEEEEEEEEBTTBCCEEEEEEEEETCEEEEEEEEESSSCC
T ss_pred EEEEEccccEEEccceEEEEcC--CeEEEEEEeeeceeEEEEEEEEEEEEcccCCcEEEEEEEEEEEEEEEEEEcCCCce
Confidence 4899999999999999988754 4455555555 2333332 22222221111236677778888888988777899
Q ss_pred eeEEEeeecCceeeecc
Q psy6174 97 TLHSIRVLQPKQVRVDS 113 (174)
Q Consensus 97 tLhSIrVlQPkqvrV~S 113 (174)
+|-++++.+=.++.|.-
T Consensus 136 ~l~~f~i~~l~~i~v~~ 152 (196)
T 3uv1_A 136 TMTSFEVRQFANVVNHI 152 (196)
T ss_dssp EEEEEEECCCSEEEEEE
T ss_pred eeceeceeeecceEEEE
Confidence 99999997665555544
No 2
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Probab=80.55 E-value=4.1 Score=34.67 Aligned_cols=88 Identities=25% Similarity=0.270 Sum_probs=66.1
Q ss_pred ceeeecceeeeecCceEEEEecCcceEEeeeeeccee--Eeeeh-----hhcchhhhhhhhcccccceeeeeeEEEEeeC
Q psy6174 21 KATLLGLSTLRRDGDVTVNVMSAHTTVKAKFFVGPLM--LKVEK-----EFGRGVKKELRSATATTAEMMGKINLRVMHG 93 (174)
Q Consensus 21 kaTLyGLsSLkR~gdV~Vn~m~~hTTvK~kF~~GPL~--LkVEK-----efgrgakkelrSATAtT~EM~Gkl~lrv~~g 93 (174)
.|-+-||+|++|.||-.| -.|-.+++.+-.+|=+- |.++- -.|+|-.-+ ++++..-|.=.+.|-|.--
T Consensus 428 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 502 (568)
T 3h4z_A 428 NIQVRGLKQMKRVGDANV--KSEDGVVKAHLLVGVHDDVVSMEYDLAYKLGDLHPNTH---VISDIQDFVVELSLEVSEE 502 (568)
T ss_dssp EEEEECGGGCEECSCCEE--EEETTEEEEEEEEEECSSCEEEEEEEEECBTTBCCEEE---EEEEESSEEEEEEEEECTT
T ss_pred ccEEEeeeehhcccccee--eccCcEEEEEeecccccccccceeEEEEEeeccCCCce---EEeEeeeEEEEEEEEeecc
Confidence 356789999999999865 45677888888888444 54442 234443322 4566677777889999999
Q ss_pred CceeeEEEeeecCceeeecc
Q psy6174 94 GQATLHSIRVLQPKQVRVDS 113 (174)
Q Consensus 94 g~AtLhSIrVlQPkqvrV~S 113 (174)
|.-+|.|.+|.|=-+|.|.-
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~ 522 (568)
T 3h4z_A 503 GNMTLTSFEVRQFANVVNHI 522 (568)
T ss_dssp CCEEEEEEEECCCSCEEEEE
T ss_pred ceEEeeeeeEEEecceeEEe
Confidence 99999999999999988764
No 3
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=36.84 E-value=37 Score=23.06 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=25.8
Q ss_pred chhhhhhh--cccchhHHHHHHHHHHHhhhh
Q psy6174 118 DSTREFLW--KRSSHIAHLVTEKLTSAARSL 146 (174)
Q Consensus 118 drTREfvW--~RS~~IA~lVseKL~~Aarsm 146 (174)
...+.++| -|++.+..-+-|++...|+++
T Consensus 103 ~~~~~~~~llsR~~~l~~e~~~~f~~~~~~~ 133 (151)
T 1e5p_A 103 GQETNMIVVAGKGNALTPEENEILVQFAHEK 133 (151)
T ss_dssp SCEEEEEEEEESSSCCCHHHHHHHHHHHHHT
T ss_pred CcEEEEEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 67788899 899999999999999999876
No 4
>4gb3_1 Coat protein 1; capsid protein; HET: PLM MYR; 2.74A {Human coxsackievirus B3} PDB: 1cov_1* 1jew_1 1oop_A* 1mqt_A*
Probab=30.38 E-value=41 Score=28.44 Aligned_cols=36 Identities=28% Similarity=0.469 Sum_probs=26.6
Q ss_pred cccceeeeeeEEEEeeCCceee--EEEee-ecCceeeec
Q psy6174 77 ATTAEMMGKINLRVMHGGQATL--HSIRV-LQPKQVRVD 112 (174)
Q Consensus 77 AtT~EM~Gkl~lrv~~gg~AtL--hSIrV-lQPkqvrV~ 112 (174)
..+.-++|.|-+|+++++...- ..||| ++||.||.=
T Consensus 207 ~~~~N~mGtl~~R~vn~~~~~~~~~~vRvY~kpkhv~aw 245 (281)
T 4gb3_1 207 INTLNNMGTLYARHVNAGSTGPIKSTIRIYFKPKHVKAW 245 (281)
T ss_dssp GGGTCCCCEEEEEESSCCSSSCEEEEEEEEECEEEEEEE
T ss_pred ccccCCCceEEEEeccCCCCCceEEEEEEEEeeeeeEEE
Confidence 3566788999999999776542 34666 589998863
No 5
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=29.51 E-value=41 Score=22.90 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=24.8
Q ss_pred chhhhhhh--cccchhHHHHHHHHHHHhhhh
Q psy6174 118 DSTREFLW--KRSSHIAHLVTEKLTSAARSL 146 (174)
Q Consensus 118 drTREfvW--~RS~~IA~lVseKL~~Aarsm 146 (174)
...+.++| -|++.+-.-+-+++...|+++
T Consensus 109 g~~~~~~~llsR~~~~~~e~~~~f~~~~~~~ 139 (157)
T 1dzk_A 109 GDKTIMTGLLGKGTDIEDQDLEKFKEVTREN 139 (157)
T ss_dssp CCEEEEEEEEESSSCCCHHHHHHHHHHHHHT
T ss_pred CceEEEEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 55677888 899999999999999998876
No 6
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=26.56 E-value=68 Score=21.89 Aligned_cols=29 Identities=7% Similarity=0.011 Sum_probs=24.8
Q ss_pred chhhhhhh--cccchhHHHHHHHHHHHhhhh
Q psy6174 118 DSTREFLW--KRSSHIAHLVTEKLTSAARSL 146 (174)
Q Consensus 118 drTREfvW--~RS~~IA~lVseKL~~Aarsm 146 (174)
...+.++| -|++.+-.-+-+++...|+++
T Consensus 108 ~~~~~~~~llsR~~~l~~e~~~~f~~~~~~~ 138 (156)
T 1bj7_A 108 ERITKMTEGLAKGTSFTPEELEKYQQLNSER 138 (156)
T ss_dssp SCEEEEEEEEESSSCCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 35677888 899999999999999999876
No 7
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=25.71 E-value=46 Score=22.87 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=24.9
Q ss_pred chhhhhhh--cccchhHHHHHHHHHHHhhhh
Q psy6174 118 DSTREFLW--KRSSHIAHLVTEKLTSAARSL 146 (174)
Q Consensus 118 drTREfvW--~RS~~IA~lVseKL~~Aarsm 146 (174)
...+.++| -|++.+-.-+-+++...|+++
T Consensus 110 g~~~~~~~llsR~~~~~~e~~~~f~~~~~~~ 140 (160)
T 2hlv_A 110 GQTTELTELFVKGLNVEDEDLEKFWKLTEDK 140 (160)
T ss_dssp SCEEEEEEEEECSSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEEEEEccCCCCCHHHHHHHHHHHHHc
Confidence 55677888 899999999999999999876
No 8
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=25.62 E-value=66 Score=26.83 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.5
Q ss_pred eeeeEEEEeeCCceeeEEEee
Q psy6174 83 MGKINLRVMHGGQATLHSIRV 103 (174)
Q Consensus 83 ~Gkl~lrv~~gg~AtLhSIrV 103 (174)
-|+..||++|+|.+..+.+.+
T Consensus 186 ~g~~RlRliNa~~~~~~~~~i 206 (448)
T 3aw5_A 186 GGSYRLRLVNGSNARLYMLSI 206 (448)
T ss_dssp EEEEEEEEEECSSSCCEEEEE
T ss_pred CCeEEEEEEcCCCcceEEEEE
Confidence 468999999999998888888
No 9
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=20.75 E-value=82 Score=26.23 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=17.9
Q ss_pred eeeeEEEEeeCCceeeEEEee
Q psy6174 83 MGKINLRVMHGGQATLHSIRV 103 (174)
Q Consensus 83 ~Gkl~lrv~~gg~AtLhSIrV 103 (174)
-|+..||++|+|.+..+.+.+
T Consensus 199 ~g~~RlRliNa~~~~~~~~~i 219 (451)
T 2uxt_A 199 RGWVRLRLLNASNSRRYQLQM 219 (451)
T ss_dssp SSEEEEEEEECCSSCCEEEEE
T ss_pred CCEEEEEEEccCCceeEEEEE
Confidence 358999999999998888877
No 10
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=19.91 E-value=51 Score=22.74 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=7.2
Q ss_pred HHHHHHhhhhcCCCCCCCCCCCCCCCCCCC
Q psy6174 137 EKLTSAARSLLQPIPSNTPHIPLPPPPSRY 166 (174)
Q Consensus 137 eKL~~Aarsml~p~p~~t~~~~~~~~~~~~ 166 (174)
+-+......++.|.-+-++-.|+||+|-.|
T Consensus 178 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 207 (208)
T 2g3b_A 178 SHLLGAIDVVMSEPTHHTADTPVTPTPKEY 207 (208)
T ss_dssp HHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCcccc
Confidence 344455567788877778888888888766
Done!