Query psy6174
Match_columns 174
No_of_seqs 9 out of 11
Neff 1.6
Searched_HMMs 13730
Date Fri Aug 16 19:36:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6174.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6174hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gska2 b.6.1.3 (A:183-356) Sp 38.5 11 0.0008 26.5 3.0 34 84-117 66-99 (174)
2 d1aym1_ b.121.4.1 (1:) Rhinovi 31.6 15 0.0011 29.1 3.1 36 77-112 208-246 (285)
3 d1oopa_ b.121.4.1 (A:) Swine v 31.0 16 0.0012 28.8 3.2 36 77-112 197-235 (271)
4 d1r1a1_ b.121.4.1 (1:) Rhinovi 29.5 12 0.00088 29.7 2.2 36 78-113 208-246 (283)
5 d1ncqa_ b.121.4.1 (A:) Rhinovi 28.5 20 0.0014 28.3 3.3 35 78-112 200-237 (273)
6 d1ev11_ b.121.4.1 (1:) Human e 27.7 21 0.0015 28.3 3.3 35 78-112 211-248 (281)
7 d1pvc1_ b.121.4.1 (1:) Poliovi 27.6 17 0.0012 29.0 2.7 34 78-111 210-246 (279)
8 d1aoza2 b.6.1.3 (A:130-338) As 25.3 31 0.0023 23.5 3.5 22 84-105 83-104 (209)
9 d2ogqa2 d.223.1.2 (A:507-593) 23.0 19 0.0014 23.3 1.9 22 22-47 14-35 (87)
10 d1kv7a2 b.6.1.3 (A:171-335) mu 22.9 32 0.0024 23.7 3.3 35 83-117 58-92 (165)
11 d1d4m1_ b.121.4.1 (1:) Human e 22.9 29 0.0021 27.6 3.3 35 78-112 211-248 (284)
12 d1fpn1_ b.121.4.1 (1:) Rhinovi 22.3 35 0.0026 26.9 3.7 34 78-111 194-230 (269)
13 d1beba_ b.60.1.1 (A:) beta-Lac 20.2 23 0.0017 21.9 1.8 31 116-146 107-139 (156)
No 1
>d1gska2 b.6.1.3 (A:183-356) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]}
Probab=38.50 E-value=11 Score=26.51 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=24.2
Q ss_pred eeeEEEEeeCCceeeEEEeeecCceeeeccCCCc
Q psy6174 84 GKINLRVMHGGQATLHSIRVLQPKQVRVDSQDDH 117 (174)
Q Consensus 84 Gkl~lrv~~gg~AtLhSIrVlQPkqvrV~S~DnH 117 (174)
|+..||++|++.+..+.+.+-+--.+.|-+.|-.
T Consensus 66 ~~~RlRliNa~~~~~~~l~~~~g~~~~vIa~DG~ 99 (174)
T d1gska2 66 RKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGG 99 (174)
T ss_dssp SEEEEEEEECCSSCCEEEEETTCCCEEEEEETTE
T ss_pred ceEEEEEEecccCceeeEeecCCCcEEEEEECCC
Confidence 5789999999999999888854323445555533
No 2
>d1aym1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus 16, (HRV-16) [TaxId: 31708]}
Probab=31.56 E-value=15 Score=29.14 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=27.4
Q ss_pred cccceeeeeeEEEEeeCCceeeEEE--ee-ecCceeeec
Q psy6174 77 ATTAEMMGKINLRVMHGGQATLHSI--RV-LQPKQVRVD 112 (174)
Q Consensus 77 AtT~EM~Gkl~lrv~~gg~AtLhSI--rV-lQPkqvrV~ 112 (174)
...+-++|.|.+|++++...+...+ || ++||.||+=
T Consensus 208 ~~p~n~mGtl~~R~vn~~~~~~~~~~~rVY~k~Khvraw 246 (285)
T d1aym1_ 208 TVVTNDMGTLCSRIVTSEQLHKVKVVTRIYHKAKHTKAW 246 (285)
T ss_dssp TTTTCCCCEEEEEECSCCCSSCEEEEEEEEEEEEEEEEE
T ss_pred ccccccceeeEEEeecCCCCCcceEEEEEEEEecceEEE
Confidence 3467789999999999877665444 55 689999864
No 3
>d1oopa_ b.121.4.1 (A:) Swine vesicular disease virus coat proteins {Swine vesicular disease virus [TaxId: 12075]}
Probab=30.96 E-value=16 Score=28.78 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=26.5
Q ss_pred cccceeeeeeEEEEeeCCceee-E-EEee-ecCceeeec
Q psy6174 77 ATTAEMMGKINLRVMHGGQATL-H-SIRV-LQPKQVRVD 112 (174)
Q Consensus 77 AtT~EM~Gkl~lrv~~gg~AtL-h-SIrV-lQPkqvrV~ 112 (174)
...+-++|.|.+|+++.+.... . .||| ++||.||+=
T Consensus 197 ~~p~N~mGtl~vR~vn~~~~~~~~~~~RvY~kpKhvraw 235 (271)
T d1oopa_ 197 ISTLNNMGTLYMRHVNDGGPGPIVSTVRIYFKPKHVKTW 235 (271)
T ss_dssp GGGTCCCCEEEEEESSCCCSSCEEEEEEEEEEEEEEEEE
T ss_pred cccccCCeeEEEEEecCCCCCceEEEEEEEEeecceEEE
Confidence 3567789999999998766533 2 3666 689998864
No 4
>d1r1a1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A 1A (HRV-1A) [TaxId: 12134]}
Probab=29.45 E-value=12 Score=29.66 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=26.4
Q ss_pred ccceeeeeeEEEEeeCCceee--EEEeee-cCceeeecc
Q psy6174 78 TTAEMMGKINLRVMHGGQATL--HSIRVL-QPKQVRVDS 113 (174)
Q Consensus 78 tT~EM~Gkl~lrv~~gg~AtL--hSIrVl-QPkqvrV~S 113 (174)
..+-++|.|.+|++++...+- -.|||. +||.||.=-
T Consensus 208 ~p~n~mGtl~vR~vn~~~~~~~~~~vrVY~k~Khvraw~ 246 (283)
T d1r1a1_ 208 VVTNDMGTICSRIVTEKQKLSVVITTHIYHKAKHTKAWC 246 (283)
T ss_dssp TTSCCCCEEEEECTTCCCSSCEEEEEEEEEEEEEEEEEE
T ss_pred ccccCceeEEEEEecCCCCCceeEEEEEEEEecceEEEC
Confidence 456789999999998665443 236774 999998643
No 5
>d1ncqa_ b.121.4.1 (A:) Rhinovirus coat proteins {Human rhinovirus B 14 (HRV-14) [TaxId: 12131]}
Probab=28.49 E-value=20 Score=28.28 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=25.7
Q ss_pred ccceeeeeeEEEEeeCCceee--EEEee-ecCceeeec
Q psy6174 78 TTAEMMGKINLRVMHGGQATL--HSIRV-LQPKQVRVD 112 (174)
Q Consensus 78 tT~EM~Gkl~lrv~~gg~AtL--hSIrV-lQPkqvrV~ 112 (174)
..+-++|.|.+|+++...... -.||| ++||.||.=
T Consensus 200 ~p~n~mGtl~iR~vn~~~~~~~~~~~riY~k~Khvraw 237 (273)
T d1ncqa_ 200 TVLNHMGSMAFRIVNEHDEHKTLVKIRVYHRAKHVEAW 237 (273)
T ss_dssp GGTCCCCEEEEEECSCCCSSCEEEEEEEEEEEEEEEEE
T ss_pred cccCcceeEEEEEecCCCCccceEEEEEEEeecceEEE
Confidence 466788999999999655433 24676 689988863
No 6
>d1ev11_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human echovirus 1 [TaxId: 46633]}
Probab=27.73 E-value=21 Score=28.27 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=25.3
Q ss_pred ccceeeeeeEEEEeeCCceeeE--EEee-ecCceeeec
Q psy6174 78 TTAEMMGKINLRVMHGGQATLH--SIRV-LQPKQVRVD 112 (174)
Q Consensus 78 tT~EM~Gkl~lrv~~gg~AtLh--SIrV-lQPkqvrV~ 112 (174)
..+-++|.|.+|+++......+ .+|| ++||.||.=
T Consensus 211 ~p~N~mGtl~~R~vn~~~~~~~~~~~RVy~kpKhvraw 248 (281)
T d1ev11_ 211 TTLNNMGQLFFRHVNKPNPAAITSVARIYFKPKHVRAW 248 (281)
T ss_dssp GGTCCCCEEEEEECSCCCSSCEEEEEEEEEEEEEEEEE
T ss_pred cCcccCeEEEEEEecCCCCcceeEEEEEEEEecceEEE
Confidence 5667899999999987554433 2455 688888864
No 7
>d1pvc1_ b.121.4.1 (1:) Poliovirus coat proteins {Poliovirus type 3, strain Sabin [TaxId: 12086]}
Probab=27.56 E-value=17 Score=28.99 Aligned_cols=34 Identities=32% Similarity=0.609 Sum_probs=26.0
Q ss_pred ccceeeeeeEEEEeeCCceee--EEEee-ecCceeee
Q psy6174 78 TTAEMMGKINLRVMHGGQATL--HSIRV-LQPKQVRV 111 (174)
Q Consensus 78 tT~EM~Gkl~lrv~~gg~AtL--hSIrV-lQPkqvrV 111 (174)
.+.-++|.|.+|++++...+- -.||| ++||.||+
T Consensus 210 ~~~N~mGtl~~R~vn~~~~~~~~~~vRiY~kpKHvra 246 (279)
T d1pvc1_ 210 MTVDDFGVLAVRVVNDHNPTKVTSKVRIYMKPKHVRV 246 (279)
T ss_dssp CCSSTTCEEEEEECSCCCSSCEEEEEEEEEEEEEEEE
T ss_pred cccCCceeEEEEEecCCCCceeeEEEEEEeeccccEE
Confidence 466788999999999765542 24777 68999886
No 8
>d1aoza2 b.6.1.3 (A:130-338) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}
Probab=25.27 E-value=31 Score=23.54 Aligned_cols=22 Identities=5% Similarity=0.046 Sum_probs=17.4
Q ss_pred eeeEEEEeeCCceeeEEEeeec
Q psy6174 84 GKINLRVMHGGQATLHSIRVLQ 105 (174)
Q Consensus 84 Gkl~lrv~~gg~AtLhSIrVlQ 105 (174)
.+..||++|+|..+-+.|.+-.
T Consensus 83 ~~~RlRliNa~~~~~~~~~idg 104 (209)
T d1aoza2 83 KTYRIRIASTTALAALNFAIGN 104 (209)
T ss_dssp CEEEEEEEECCSSCEEEEEETT
T ss_pred CEEEEEEEecCCceeEEEEeCC
Confidence 4689999999998877776643
No 9
>d2ogqa2 d.223.1.2 (A:507-593) Serine/threonine-protein kinase plk C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.00 E-value=19 Score=23.28 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=17.2
Q ss_pred eeeecceeeeecCceEEEEecCcceE
Q psy6174 22 ATLLGLSTLRRDGDVTVNVMSAHTTV 47 (174)
Q Consensus 22 aTLyGLsSLkR~gdV~Vn~m~~hTTv 47 (174)
|.+|=|| +|.|-||.-.|||-|
T Consensus 14 ai~f~LS----ngtvQVNfF~DhtKi 35 (87)
T d2ogqa2 14 AIILHLS----NGSVQINFFQDHTKL 35 (87)
T ss_dssp EEEEEET----TSCEEEEETTTCCEE
T ss_pred EEEEEEc----CCcEEEEEeCCCcEE
Confidence 4455444 899999999999865
No 10
>d1kv7a2 b.6.1.3 (A:171-335) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]}
Probab=22.93 E-value=32 Score=23.70 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=22.7
Q ss_pred eeeeEEEEeeCCceeeEEEeeecCceeeeccCCCc
Q psy6174 83 MGKINLRVMHGGQATLHSIRVLQPKQVRVDSQDDH 117 (174)
Q Consensus 83 ~Gkl~lrv~~gg~AtLhSIrVlQPkqvrV~S~DnH 117 (174)
-|+..||++|++.+....+.+..-....|-..|-.
T Consensus 58 ~~~~RlR~iNa~~~~~~~~~~~~g~~~~via~DG~ 92 (165)
T d1kv7a2 58 RGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGG 92 (165)
T ss_dssp EEEEEEEEEECCSSCCEEEEETTCCCEEEEEETTE
T ss_pred CcEEEEEEEEcccCceeeEEecCCCeEEEEEeCCc
Confidence 35679999999888877776543223444444544
No 11
>d1d4m1_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human coxsackievirus A9 [TaxId: 12067]}
Probab=22.89 E-value=29 Score=27.62 Aligned_cols=35 Identities=31% Similarity=0.509 Sum_probs=25.7
Q ss_pred ccceeeeeeEEEEeeCCcee--eEEEee-ecCceeeec
Q psy6174 78 TTAEMMGKINLRVMHGGQAT--LHSIRV-LQPKQVRVD 112 (174)
Q Consensus 78 tT~EM~Gkl~lrv~~gg~At--LhSIrV-lQPkqvrV~ 112 (174)
.+.-++|.|.+|++++.... --.||| ++||.||.=
T Consensus 211 ~~~N~mGtl~~R~vn~~~~~~~~~~vRVY~kpKhvraW 248 (284)
T d1d4m1_ 211 NTLNNLGHIYVRHVSGSSPHPITSTIRVYFKPKHTRAW 248 (284)
T ss_dssp GGGCCCCEEEEEESSCCCSSCEEEEEEEEEEEEEEEEE
T ss_pred cccccceeEEEEEecCCCCceeeEEEEEEEeecceEEE
Confidence 56688999999999866542 224776 689998863
No 12
>d1fpn1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A 2 (HRV-2) [TaxId: 12130]}
Probab=22.27 E-value=35 Score=26.91 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=25.5
Q ss_pred ccceeeeeeEEEEeeCCceee--EEEee-ecCceeee
Q psy6174 78 TTAEMMGKINLRVMHGGQATL--HSIRV-LQPKQVRV 111 (174)
Q Consensus 78 tT~EM~Gkl~lrv~~gg~AtL--hSIrV-lQPkqvrV 111 (174)
.+.-++|.|.+|++++...+- -.||| ++||.||.
T Consensus 194 ~~~N~mGtl~~R~vn~~~~~~~~~~vRiY~kpKhv~a 230 (269)
T d1fpn1_ 194 ANTNNMGSLCSRIVTEKHIHKVHIMTRIYHKAKHVKA 230 (269)
T ss_dssp TTTCCCCEEEEEECSCSCSCCEEEEEEEEEEEEEEEE
T ss_pred ccCCCCeEEEEEEecCCCCCceEEEEEEEEeccceEE
Confidence 566789999999998765522 33676 68999886
No 13
>d1beba_ b.60.1.1 (A:) beta-Lactoglobulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.25 E-value=23 Score=21.88 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=26.5
Q ss_pred Ccchhhhhhh--cccchhHHHHHHHHHHHhhhh
Q psy6174 116 DHDSTREFLW--KRSSHIAHLVTEKLTSAARSL 146 (174)
Q Consensus 116 nHdrTREfvW--~RS~~IA~lVseKL~~Aarsm 146 (174)
.....+.++| -|++.+..-+-+++.++++++
T Consensus 107 ~~~~~~~~~~llsR~p~l~~e~~~~f~~~~~~~ 139 (156)
T d1beba_ 107 AEPEQSLVCQCLVRTPEVDDEALEKFDKALKAL 139 (156)
T ss_dssp TCGGGTCEEEEEESSSSCCHHHHHHHHHHHTTS
T ss_pred CCCcceEEEEEEecCCCCCHHHHHHHHHHHHHc
Confidence 3456678899 999999999999999999986
Done!