RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6174
(174 letters)
>gnl|CDD|220852 pfam10698, DUF2505, Protein of unknown function (DUF2505). Members
of this family are all Actinobacteria. The function is
not known.
Length = 159
Score = 32.6 bits (75), Expect = 0.042
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 18 PRAKATLLGLSTLRRDGDVTVNVMSAHTTVKAKFFVGPLMLKVEKEFGRGVKKELRSATA 77
P A +L G L DG + ++ VK VG K+EK + LR+
Sbjct: 98 PGAPVSLTGTMRLSPDGGGSRLEVTGTVEVKV-PLVGG---KIEKLVADQLVDLLRAEQR 153
Query: 78 TTAE 81
T +
Sbjct: 154 FTEQ 157
>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 28.8 bits (65), Expect = 1.3
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 17/68 (25%)
Query: 92 HGGQATLHSIRVLQPKQVRVDSQDDHDSTREFLWKRSSHIAHLVTEKLTSAARSLLQPIP 151
A L ++R+L+ + RE L + ++ + L +P
Sbjct: 277 AVAAAALAALRILE----------EGPERRERLQELAAF-------FRSLLKALGLVLLP 319
Query: 152 SNTPHIPL 159
S +P IP+
Sbjct: 320 SESPIIPV 327
>gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase
A/UDP-N-acetylmuramate--L-alanine ligase; Provisional.
Length = 809
Score = 28.6 bits (64), Expect = 1.9
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 85 KINLRVMHGGQATLHSIRVLQPKQV-RVDSQDDHDS-----TREFLWKRSSHIAHLVTEK 138
K++L ++ GG++ H I +L K + + S + +D R+ LW+ S + + E
Sbjct: 451 KLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQGLWETVSSLETAIEED 510
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 27.4 bits (62), Expect = 4.4
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 17 HPRAKATLLGLSTLR----RDGDVT 37
HPR T L+ LR +DG VT
Sbjct: 219 HPRPDTTAESLAKLRPAFDKDGTVT 243
>gnl|CDD|216194 pfam00922, Phosphoprotein, Vesiculovirus phosphoprotein.
Length = 283
Score = 26.8 bits (59), Expect = 6.9
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 134 LVTEKLTSAARSLLQPIPSNTPHIPLPPPPSR 165
++ E++T S + IPS+ P S
Sbjct: 163 IIKERMTPDVSSTSEHIPSSNTSPSTSEPVST 194
>gnl|CDD|239493 cd03399, Band_7_flotillin, Band_7_flotillin: a subgroup of the band
7 domain of flotillin (reggie) like proteins. This
subgroup contains proteins similar to stomatin,
prohibitin, flotillin, HlfK/C and podicin. These two
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and, interact with a variety
of proteins. Flotillins may play a role in the
progression of prion disease, in the pathogenesis of
neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis.
Length = 128
Score = 26.0 bits (58), Expect = 7.8
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 108 QVRVDSQDDHDST--REFLWKRSSHIAHLVTEKLTSAARSLL 147
QV+V ++ +T FL K I LV E L R+++
Sbjct: 31 QVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVV 72
>gnl|CDD|185104 PRK15182, PRK15182, Vi polysaccharide biosynthesis protein TviB;
Provisional.
Length = 425
Score = 26.6 bits (58), Expect = 8.8
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 68 VKKELRSATATTAEMMGKINLRVMHGGQATLHSIRVLQPKQVRVDSQDD 116
+KK +TA AE++ ++ +++ G SI+V + +V ++Q D
Sbjct: 168 IKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRD 216
>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN). This family
consists of several eukaryotic survival motor neuron
(SMN) proteins. The Survival of Motor Neurons (SMN)
protein, the product of the spinal muscular
atrophy-determining gene, is part of a large
macromolecular complex (SMN complex) that functions in
the assembly of spliceosomal small nuclear
ribonucleoproteins (snRNPs). The SMN complex functions
as a specificity factor essential for the efficient
assembly of Sm proteins on U snRNAs and likely protects
cells from illicit, and potentially deleterious,
non-specific binding of Sm proteins to RNAs.
Length = 264
Score = 26.1 bits (57), Expect = 9.5
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 149 PIPSNTPHIPLPPPPSRYPVYEEDNE 174
P P P IP PPP S P + ED+E
Sbjct: 203 PFPLGPPMIPPPPPMS--PDFGEDDE 226
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.377
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,580,995
Number of extensions: 737421
Number of successful extensions: 805
Number of sequences better than 10.0: 1
Number of HSP's gapped: 802
Number of HSP's successfully gapped: 17
Length of query: 174
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 84
Effective length of database: 6,945,742
Effective search space: 583442328
Effective search space used: 583442328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.6 bits)