RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6174
(174 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.011
Identities = 27/186 (14%), Positives = 50/186 (26%), Gaps = 53/186 (28%)
Query: 10 NPPKAKSH-PRAKATL---LGLSTLRRDGDVTVNVMS-------AHTTVKAKFFVGPLML 58
N AK + R + L L LR +V ++ + A +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-------- 174
Query: 59 KVEKEFGRGV----KKELRSATATTAEMMGKINLRVMHGGQATLHSIRVLQPKQVRVDSQ 114
KV+ + + K S EM+ K+ ++ + R +++
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVL-EMLQKLLYQIDPNWTS-----RSDHSSNIKLRIH 228
Query: 115 DDHDSTREFLWKR--------------SSHIAH-------LVTEKLTSAARSLLQPIPSN 153
R L + + L+T + L +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL---SAAT 285
Query: 154 TPHIPL 159
T HI L
Sbjct: 286 TTHISL 291
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.20
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 23/87 (26%)
Query: 83 MGKINLR---VMHGGQATLHSIRV----------LQ-------PKQVRVDSQDDHDSTRE 122
M + R + HG + H + V LQ P+ + DD +T
Sbjct: 1 MDAYSTRPLTLSHG--SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 123 FLWKR-SSHIAHLVTEKLTSAARSLLQ 148
L + +++ LV +L
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLN 85
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 29.0 bits (66), Expect = 0.70
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 17 HPRAKATLLGLSTLR----RDGDVT 37
+ R ATL ++ LR ++G VT
Sbjct: 218 YIRHGATLDSMAKLRPAFDKEGTVT 242
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 1.1
Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 9/101 (8%)
Query: 65 GRGVKKELRSATATTAEMMGKINLRVMHGGQAT-LHSIRVLQPKQVRVDSQDDHD-STR- 121
G+G+ R ++ +N++ T I+ ++ ++
Sbjct: 1223 GKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENEL--EALKLEAEEIPS 1280
Query: 122 ----EFLWKRSSHIAHLVTEKLTSAARSLLQPIPSNTPHIP 158
EFL +R+ I + +L +A + P I
Sbjct: 1281 EDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIA 1321
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 28.2 bits (64), Expect = 1.3
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 17 HPRAKATLLGLSTLR----RDGDVT 37
HPRA T L+ L+ +DG VT
Sbjct: 220 HPRADITAEKLAGLKPAFRKDGSVT 244
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 28.2 bits (64), Expect = 1.5
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 17 HPRAKATLLGLSTLR----RDGDVT 37
+ + T+ L+ LR +DG VT
Sbjct: 223 YIKPGTTMEKLAKLRPAFKKDGTVT 247
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 27.8 bits (63), Expect = 2.1
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 17 HPRAKATLLGLSTLR----RDGDVT 37
+P+ T GLS L+ +DG VT
Sbjct: 222 YPKLGMTFEGLSKLKPAFKKDGTVT 246
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 27.6 bits (62), Expect = 2.2
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 22/79 (27%)
Query: 108 QVRVDSQDDHDSTREFLWKRSSHIAHLVT------------EKLTSAA-------RSLLQ 148
VR+ R+ RS+ I L+T E++ A
Sbjct: 91 HVRIVGIPRVIELRKI---RSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEF 147
Query: 149 PIPSNTPHIPLPPPPSRYP 167
P + + P+ P
Sbjct: 148 EWPEDEEMPEVLEMPTICP 166
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics,
protein structur initiative, midwest center for
structural genomics; 2.40A {Clostridium difficile 630}
Length = 148
Score = 26.6 bits (60), Expect = 2.6
Identities = 4/9 (44%), Positives = 7/9 (77%)
Query: 164 SRYPVYEED 172
+RYPV ++
Sbjct: 57 TRYPVCRKN 65
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl
diphosphate, magnesium, cyclization, lyase; HET: FPF;
1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A*
3cke_A*
Length = 320
Score = 26.7 bits (58), Expect = 3.9
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 146 LLQPIPSNTPHIPLPPPPSRYP 167
+ +P +N L PPPS +
Sbjct: 1 MKKPNGTNGASSSLEPPPSTFQ 22
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus
RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio
parahaemolyticus}
Length = 130
Score = 26.2 bits (59), Expect = 4.1
Identities = 5/9 (55%), Positives = 5/9 (55%)
Query: 164 SRYPVYEED 172
SR VY E
Sbjct: 40 SRPLVYSEQ 48
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 26.7 bits (60), Expect = 4.2
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 4/25 (16%)
Query: 17 HPRAKATLLGLSTLR----RDGDVT 37
PR +L L+ LR G VT
Sbjct: 224 GPRRDTSLEKLAALRPVFREGGTVT 248
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup
B}
Length = 156
Score = 26.3 bits (59), Expect = 4.2
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 164 SRYPVYEED 172
SR+PV ED
Sbjct: 72 SRFPVIGED 80
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 26.7 bits (60), Expect = 4.5
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 17 HPRAKATLLGLSTLR----RDGDVTV 38
PR + + +S L+ DG TV
Sbjct: 221 FPRHGSNIEAMSKLKPYFLTDGTGTV 246
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP,
structural genomics, PSI-2, protein S initiative; HET:
MSE AMP; 2.00A {Bordetella parapertussis}
Length = 129
Score = 25.8 bits (58), Expect = 4.6
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 164 SRYPVYEED 172
SR+PVYE+D
Sbjct: 39 SRFPVYEDD 47
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella
oneidensis}
Length = 172
Score = 25.9 bits (58), Expect = 5.5
Identities = 4/9 (44%), Positives = 6/9 (66%)
Query: 164 SRYPVYEED 172
SR+PV +
Sbjct: 76 SRFPVCRNN 84
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics; HET: AMP; 2.00A {Salmonella
typhimurium}
Length = 127
Score = 25.5 bits (57), Expect = 5.8
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 164 SRYPVYEED 172
SR+PV ED
Sbjct: 37 SRFPVISED 45
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural
genomics, midwest center for structural genomics; HET:
AMP; 1.53A {Pseudomonas syringae}
Length = 136
Score = 25.5 bits (57), Expect = 6.9
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 164 SRYPVYEED 172
SRYPV E
Sbjct: 37 SRYPVIGES 45
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold,
farnesyl diphosphate, metal-binding, lyase, magnesium;
HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A
3lgk_A 3lg5_A*
Length = 382
Score = 25.9 bits (56), Expect = 7.9
Identities = 13/59 (22%), Positives = 20/59 (33%)
Query: 113 SQDDHDSTREFLWKRSSHIAHLVTEKLTSAARSLLQPIPSNTPHIPLPPPPSRYPVYEE 171
S H L R SH+ H T+ ++ P P I P +P + +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVHAFPHGTTATPTAIAVPPSLRLPVIEAAFPRQLHPYWPK 61
>2x2h_A Alpha-1,4-glucan lyase isozyme 1; anhydrofructose pathway,
glycoside hydrolase family 3 starch binding domain;
2.06A {Gracilariopsis lemaneiformis} PDB: 2x2i_A*
2x2j_A*
Length = 1027
Score = 25.8 bits (56), Expect = 8.7
Identities = 3/22 (13%), Positives = 6/22 (27%)
Query: 150 IPSNTPHIPLPPPPSRYPVYEE 171
+ T + Y V +
Sbjct: 446 QTNITCFLRNDNEGQDYEVNQT 467
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme,
oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus
pantotrophus} PDB: 2c1u_A*
Length = 338
Score = 25.8 bits (57), Expect = 9.5
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 137 EKLTSAARSLLQPIPSNTPHIPLPPP-PSRYPVYEE 171
L A+ + + IP I P P+ E
Sbjct: 8 GALREEAKGVFEAIPEKMTAIKQTEDNPEGVPLTAE 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.377
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,525,715
Number of extensions: 133991
Number of successful extensions: 271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 35
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.0 bits)