RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6174
         (174 letters)



>d1pvc1_ b.121.4.1 (1:) Poliovirus coat proteins {Poliovirus type 3,
           strain Sabin [TaxId: 12086]}
          Length = 279

 Score = 27.1 bits (60), Expect = 1.1
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 77  ATTAEMMGKINLRVMHGGQATLHSIRV---LQPKQVRV 111
           A T +  G + +RV++    T  + +V   ++PK VRV
Sbjct: 209 AMTVDDFGVLAVRVVNDHNPTKVTSKVRIYMKPKHVRV 246


>d1r1a1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A
           1A (HRV-1A) [TaxId: 12134]}
          Length = 283

 Score = 25.2 bits (55), Expect = 4.2
 Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 77  ATTAEMMGKINLRVMHGGQATLHSIRV---LQPKQVRV 111
           +     MG I  R++   Q     I      + K  + 
Sbjct: 207 SVVTNDMGTICSRIVTEKQKLSVVITTHIYHKAKHTKA 244


>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 177

 Score = 24.4 bits (53), Expect = 8.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 145 SLLQPIPSNTPHIPLPPPPSRYP 167
            LL  +P     + LPPPP   P
Sbjct: 10  DLLTELPPPITDLTLPPPPLVIP 32


>d1fpn1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A
           2 (HRV-2) [TaxId: 12130]}
          Length = 269

 Score = 24.4 bits (53), Expect = 9.5
 Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 3/38 (7%)

Query: 77  ATTAEMMGKINLRVMHGGQATLHSIRV---LQPKQVRV 111
                 MG +  R++         I      + K V+ 
Sbjct: 193 TANTNNMGSLCSRIVTEKHIHKVHIMTRIYHKAKHVKA 230


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 602,245
Number of extensions: 24206
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 7
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)