Query psy6177
Match_columns 870
No_of_seqs 17 out of 19
Neff 1.6
Searched_HMMs 46136
Date Fri Aug 16 19:41:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1156 NtpB Archaeal/vacuolar 1.4 1.6E+03 0.034 26.3 1.1 26 718-743 310-335 (463)
2 COG1156 NtpB Archaeal/vacuolar 1.4 1.5E+03 0.032 26.4 0.9 24 794-817 309-332 (463)
3 PF15439 NYAP_N: Neuronal tyro 1.1 2.7E+03 0.059 23.8 2.2 36 645-680 94-129 (379)
4 KOG1351|consensus 1.0 2.3E+03 0.051 24.3 1.1 35 716-750 334-368 (489)
5 PF07376 Prosystemin: Prosyste 0.9 3.5E+03 0.076 20.7 2.0 9 516-524 107-115 (193)
6 KOG3200|consensus 0.7 3.5E+03 0.075 21.4 1.2 6 841-846 152-157 (224)
7 cd07353 harmonin_N N-terminal 0.5 1.9E+03 0.041 20.3 -1.8 23 828-850 35-57 (79)
8 PF07861 WND: WisP family N-Te 0.5 4.3E+03 0.094 20.9 0.5 14 769-782 114-127 (263)
9 KOG3854|consensus 0.5 1.3E+04 0.28 19.1 4.5 84 714-802 11-94 (505)
10 PF15302 P33MONOX: P33 mono-ox 0.5 6.3E+03 0.14 20.4 1.7 27 715-741 143-169 (294)
No 1
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=1.37 E-value=1.6e+03 Score=26.25 Aligned_cols=26 Identities=12% Similarity=0.026 Sum_probs=9.7
Q ss_pred CccccccccCCCccccccccCCCccc
Q psy6177 718 SQECTKAKNMPSQECTKAKNMPSQEC 743 (870)
Q Consensus 718 SsDITEPQr~pSsDITEPQrdpSgDI 743 (870)
..|||.|=-+-.|-|||-|-..|-|+
T Consensus 310 ~DDITHPIPDlTGYITEGQivl~r~l 335 (463)
T COG1156 310 GDDITHPIPDLTGYITEGQIVLSRDL 335 (463)
T ss_pred CCCcCCCCCcccceeccceEEEEhhc
Confidence 33333333333333333333333333
No 2
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=1.36 E-value=1.5e+03 Score=26.40 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=9.1
Q ss_pred CccccccccCCCchhhcccccCCC
Q psy6177 794 PSQECTKAKNMPSQECTKAKNMPS 817 (870)
Q Consensus 794 pSsDITEPQsdpSsDITEPQsdpS 817 (870)
|..|||.|=-|--+-|||-|...+
T Consensus 309 P~DDITHPIPDlTGYITEGQivl~ 332 (463)
T COG1156 309 PGDDITHPIPDLTGYITEGQIVLS 332 (463)
T ss_pred CCCCcCCCCCcccceeccceEEEE
Confidence 333333333333333333333333
No 3
>PF15439 NYAP_N: Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter
Probab=1.12 E-value=2.7e+03 Score=23.79 Aligned_cols=36 Identities=31% Similarity=0.255 Sum_probs=21.0
Q ss_pred ccccCCCCccccccCCCCcccccccccCCCcccccc
Q psy6177 645 TKAKNMPSQECTKAKNMPSQECTKAKNMPSQECTKA 680 (870)
Q Consensus 645 Tepq~~PS~dITepqrmPSsDITEPQrdPSsdITEP 680 (870)
-+|+|+|+--+-.....++..++...+..+.++++|
T Consensus 94 pKPKRdPsTrLS~S~e~v~a~~~~~~~~~~~~~~kp 129 (379)
T PF15439_consen 94 PKPKRDPSTRLSASYEAVSAGLTAAKKESSSELSKP 129 (379)
T ss_pred CCCCCCCcccccccccccccccCccccccccccccC
Confidence 466677766666666666666655555555444443
No 4
>KOG1351|consensus
Probab=0.98 E-value=2.3e+03 Score=24.29 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=16.5
Q ss_pred CCCccccccccCCCccccccccCCCccccccccCC
Q psy6177 716 MPSQECTKAKNMPSQECTKAKNMPSQECTKAKNMP 750 (870)
Q Consensus 716 ~PSsDITEPQr~pSsDITEPQrdpSgDITEPQrdP 750 (870)
||-.|||.|--+--|=|||-|-++---+|.-|-+|
T Consensus 334 mpnddithpipdltgyitegqiyvdrqlhnr~iyp 368 (489)
T KOG1351|consen 334 MPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYP 368 (489)
T ss_pred cCCcccCCCCCcccceeecceEEEehhhhcccCCC
Confidence 34444444444444444444444444444444444
No 5
>PF07376 Prosystemin: Prosystemin; InterPro: IPR009966 This family consists of several plant specific prosystemin proteins. Prosystemin is the precursor protein of the 18 amino acid wound signal systemin which activates systemic defence in plant leaves against insect herbivores [].
Probab=0.89 E-value=3.5e+03 Score=20.68 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=4.7
Q ss_pred cCCCccccc
Q psy6177 516 KNMPSQECT 524 (870)
Q Consensus 516 ~~~PS~d~T 524 (870)
|.-|||||.
T Consensus 107 k~tpsqdi~ 115 (193)
T PF07376_consen 107 KETPSQDIN 115 (193)
T ss_pred ccCCchhcc
Confidence 445555554
No 6
>KOG3200|consensus
Probab=0.72 E-value=3.5e+03 Score=21.42 Aligned_cols=6 Identities=0% Similarity=-0.075 Sum_probs=2.2
Q ss_pred cccccc
Q psy6177 841 ECTKAK 846 (870)
Q Consensus 841 DITEPQ 846 (870)
-|-+|+
T Consensus 152 lllepr 157 (224)
T KOG3200|consen 152 LLLEPR 157 (224)
T ss_pred eeeccc
Confidence 333333
No 7
>cd07353 harmonin_N N-terminal protein-binding module of harmonin. Harmonin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. Harmonin contains a single copy of this domain, which is found at the N-terminus of all three harmonin isoform classes (a, b and c), and which preceeds the first PDZ protein-binding domain, PDZ1. This harmonin_N domain binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network.
Probab=0.49 E-value=1.9e+03 Score=20.33 Aligned_cols=23 Identities=9% Similarity=-0.035 Sum_probs=0.0
Q ss_pred CccccccccCCcccccccccCCc
Q psy6177 828 SQECTKAKNMPSQECTKAKNMPS 850 (870)
Q Consensus 828 SsDITEPQRDPSgDITEPQRmPs 850 (870)
|.+|+.=-.|--.+|-+|.|+|+
T Consensus 35 Sm~lp~li~Dlk~VIN~P~R~pL 57 (79)
T cd07353 35 SMNLPVLVGDLKLVINEPSRLPL 57 (79)
T ss_pred ccCHHHHHHHHHHHhCCccccch
No 8
>PF07861 WND: WisP family N-Terminal Region; InterPro: IPR012503 This family is found at the N terminus of the Tropheryma whipplei WisP family proteins [].
Probab=0.48 E-value=4.3e+03 Score=20.93 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=0.0
Q ss_pred ccCCCcccccccCC
Q psy6177 769 KNMPSQECTKAKNM 782 (870)
Q Consensus 769 qRdPSsDITEPQrD 782 (870)
+.+||+|+++|..|
T Consensus 114 K~~PSS~~~~~~sD 127 (263)
T PF07861_consen 114 KKVPSSDVARAVSD 127 (263)
T ss_pred ecCCchhccccccc
No 9
>KOG3854|consensus
Probab=0.48 E-value=1.3e+04 Score=19.10 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=0.0
Q ss_pred ccCCCccccccccCCCccccccccCCCccccccccCCCccccccccCCCccccccccCCCcccccccCCCCcccccccCC
Q psy6177 714 KNMPSQECTKAKNMPSQECTKAKNMPSQECTKAKNMPSQECTKAKNMPSQECTKAKNMPSQECTKAKNMPSQECTKAKNM 793 (870)
Q Consensus 714 Qr~PSsDITEPQr~pSsDITEPQrdpSgDITEPQrdPSgDITEPQr~pSgDITEPqRdPSsDITEPQrDpSsDITEpQrD 793 (870)
|..-|++=-+-..+.|-|-.++. +.++|.-++.+-|++..-+-.+ ...+.|-+-.++-..--+..+..++.++.++
T Consensus 11 qq~d~ssss~s~~dsseds~~~t-ds~d~~~~~~D~p~~s~~k~~s---~~~~~~~~s~ssp~~s~~tpp~v~~~~~~~~ 86 (505)
T KOG3854|consen 11 QQFDSSSSSQSADDSSEDSRRST-DSDDDSYEIKDQPIWSGDKSIS---SENNISMMSVSSPTPSYRTPPMVYVEEAPKI 86 (505)
T ss_pred cCCCccccccCCCCccccccccc-cccccccccCCCcCcccccccc---ccccCcccccCCCCccccCCchhhhhhCCCC
Q ss_pred Ccccccccc
Q psy6177 794 PSQECTKAK 802 (870)
Q Consensus 794 pSsDITEPQ 802 (870)
++.+ +.||
T Consensus 87 ~~~r-~~p~ 94 (505)
T KOG3854|consen 87 PIDR-DLPQ 94 (505)
T ss_pred cccc-cCCC
No 10
>PF15302 P33MONOX: P33 mono-oxygenase
Probab=0.47 E-value=6.3e+03 Score=20.38 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=0.0
Q ss_pred cCCCccccccccCCCccccccccCCCc
Q psy6177 715 NMPSQECTKAKNMPSQECTKAKNMPSQ 741 (870)
Q Consensus 715 r~PSsDITEPQr~pSsDITEPQrdpSg 741 (870)
+++|+||++-.|-+++.-..|-+.+++
T Consensus 143 ~mqsge~~kEerq~sSaQSTPssTP~s 169 (294)
T PF15302_consen 143 KMQSGEITKEERQPSSAQSTPSSTPHS 169 (294)
T ss_pred cccccccchhhcCccccccCCCCCCCC
Done!