Query psy6177
Match_columns 870
No_of_seqs 17 out of 19
Neff 1.6
Searched_HMMs 29240
Date Fri Aug 16 19:41:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kzb_A Autophagy-related prote 0.5 2.4E+03 0.083 19.4 0.2 20 646-665 6-25 (118)
2 2z5s_M MDM4 protein, zebrafish 0.4 2.8E+03 0.096 19.6 0.0 16 843-858 123-138 (140)
3 3dwl_F Actin-related protein 2 0.3 4.3E+03 0.15 18.7 0.7 19 637-656 23-41 (168)
4 2fg1_A Conserved hypothetical 0.3 5.7E+03 0.19 15.9 1.1 6 741-746 11-16 (158)
5 1av3_A Kappa-PVIIA; kappa-cono 0.3 5E+03 0.17 13.6 0.3 10 860-869 4-13 (27)
6 2c61_A A-type ATP synthase non 0.3 5.7E+03 0.2 19.6 0.9 39 639-677 314-352 (469)
7 3nja_A Probable ggdef family p 0.3 4.9E+03 0.17 12.8 0.2 7 720-726 119-125 (125)
8 1k8k_F P20, ARP2/3 complex 20 0.3 5.7E+03 0.19 17.8 0.6 22 637-659 23-44 (168)
9 3i26_A Hemagglutinin-esterase; 0.2 6E+03 0.2 19.6 0.8 17 793-809 22-38 (384)
10 3i1k_A Hemagglutinin-esterase 0.2 7.3E+03 0.25 18.8 1.3 16 642-657 25-40 (377)
No 1
>2kzb_A Autophagy-related protein 19; selective autophagy, ATG19, alpha-mannosidase, protein trans; NMR {Saccharomyces cerevisiae}
Probab=0.50 E-value=2.4e+03 Score=19.41 Aligned_cols=20 Identities=20% Similarity=-0.004 Sum_probs=11.6
Q ss_pred cccCCCCccccccCCCCccc
Q psy6177 646 KAKNMPSQECTKAKNMPSQE 665 (870)
Q Consensus 646 epq~~PS~dITepqrmPSsD 665 (870)
+|-+++|..||-.+||-|-.
T Consensus 6 ~~pn~~sL~Itvs~rDnsL~ 25 (118)
T 2kzb_A 6 EPPNERSLQITMNQRDNSLY 25 (118)
T ss_dssp CCSSCCCEEEEEEEETTEEE
T ss_pred cCCCCccEEEEEecCCCeEE
Confidence 45566666666666665543
No 2
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=0.41 E-value=2.8e+03 Score=19.60 Aligned_cols=16 Identities=19% Similarity=0.219 Sum_probs=0.0
Q ss_pred cccccCCcccccccCC
Q psy6177 843 TKAKNMPSQECTKAKN 858 (870)
Q Consensus 843 TEPQRmPsqdsSgdit 858 (870)
.+|-|+|-++.||.|+
T Consensus 123 ~~p~~~pg~~~s~s~~ 138 (140)
T 2z5s_M 123 ESPSEDPGQVSSGSIN 138 (140)
T ss_dssp ----------------
T ss_pred CCCCCCCCcCCcCccc
Confidence 3566777777777775
No 3
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=0.33 E-value=4.3e+03 Score=18.72 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=8.9
Q ss_pred CCCCCcccccccCCCCcccc
Q psy6177 637 KNMPSQECTKAKNMPSQECT 656 (870)
Q Consensus 637 q~~PS~d~Tepq~~PS~dIT 656 (870)
+||||| ..|-.+-|-+++-
T Consensus 23 ~nF~Sq-~vErhnkPEVE~~ 41 (168)
T 3dwl_F 23 EEFSSE-IVERQSQPEVEVG 41 (168)
T ss_dssp CCCCCS-SSTTCCCCHHHHC
T ss_pred hcCchH-HHhhcCCCceecc
Confidence 344444 3444555555553
No 4
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=0.29 E-value=5.7e+03 Score=15.90 Aligned_cols=6 Identities=17% Similarity=0.257 Sum_probs=2.6
Q ss_pred cccccc
Q psy6177 741 QECTKA 746 (870)
Q Consensus 741 gDITEP 746 (870)
||||+|
T Consensus 11 GDit~~ 16 (158)
T 2fg1_A 11 GDATAP 16 (158)
T ss_dssp SCTTSC
T ss_pred cccCCC
Confidence 444443
No 5
>1av3_A Kappa-PVIIA; kappa-conotoxin, potassium channel blocker, cystine knot; HET: HYP; NMR {Conus purpurascens} SCOP: g.3.6.1 PDB: 1kcp_A*
Probab=0.27 E-value=5e+03 Score=13.58 Aligned_cols=10 Identities=40% Similarity=1.112 Sum_probs=6.1
Q ss_pred CchhhhhccC
Q psy6177 860 PSQECTNHIN 869 (870)
Q Consensus 860 P~~d~~~~~~ 869 (870)
|.|.|..|+.
T Consensus 4 pnqkcfqhld 13 (27)
T 1av3_A 4 PNQKCFQHLD 13 (27)
T ss_dssp TTSBCCGGGC
T ss_pred CcHHHHHHHH
Confidence 5566666653
No 6
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=0.26 E-value=5.7e+03 Score=19.57 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCCcccccccCCCCccccccCCCCcccccccccCCCccc
Q psy6177 639 MPSQECTKAKNMPSQECTKAKNMPSQECTKAKNMPSQEC 677 (870)
Q Consensus 639 ~PS~d~Tepq~~PS~dITepqrmPSsDITEPQrdPSsdI 677 (870)
+|..|+++|--+=.--|++-|-..|.++-+...+|..|+
T Consensus 314 ~~~dD~~dPI~~~~~~i~dg~ivLsr~La~~g~yPAIdv 352 (469)
T 2c61_A 314 MPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINV 352 (469)
T ss_dssp CCSCTTTSCCCCCGGGGTTEEEEBCHHHHHTTCSSCBCT
T ss_pred cCCCCcCcchHHHHhhccCcEEEEcHHHHhCCCCCccCc
No 7
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=0.26 E-value=4.9e+03 Score=12.81 Aligned_cols=7 Identities=29% Similarity=0.411 Sum_probs=0.0
Q ss_pred ccccccc
Q psy6177 720 ECTKAKN 726 (870)
Q Consensus 720 DITEPQr 726 (870)
|||+-++
T Consensus 119 DITe~k~ 125 (125)
T 3nja_A 119 DMTEHKQ 125 (125)
T ss_dssp ECCC---
T ss_pred ecccccC
No 8
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Probab=0.25 E-value=5.7e+03 Score=17.83 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=0.0
Q ss_pred CCCCCcccccccCCCCccccccC
Q psy6177 637 KNMPSQECTKAKNMPSQECTKAK 659 (870)
Q Consensus 637 q~~PS~d~Tepq~~PS~dITepq 659 (870)
+||||| ..|-.+-|.+++-.++
T Consensus 23 ~nF~Sq-~vErhnkPEVE~~~s~ 44 (168)
T 1k8k_F 23 ENFSSQ-VVERHNKPEVEVRSSK 44 (168)
T ss_dssp CCCCCS-SSTTCCCCHHHHCCCG
T ss_pred hcCcHH-HHhhcCCCceeecCCH
No 9
>3i26_A Hemagglutinin-esterase; SGNH-hydrolase fold, swiss roll, envelope protein, glycoprot hemagglutinin, membrane, transmembrane, virion; HET: NAG BMA MAN; 1.80A {Breda virus serotype 1} PDB: 3i27_A*
Probab=0.24 E-value=6e+03 Score=19.62 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=0.0
Q ss_pred CCccccccccCCCchhh
Q psy6177 793 MPSQECTKAKNMPSQEC 809 (870)
Q Consensus 793 DpSsDITEPQsdpSsDI 809 (870)
|+-+|++.++...|.||
T Consensus 22 DSRSDC~n~~~p~slDi 38 (384)
T 3i26_A 22 DSRSDCTNPQSPMSLDI 38 (384)
T ss_dssp SGGGCTTSTTTTTTCSS
T ss_pred cccccccCCCCcccccC
No 10
>3i1k_A Hemagglutinin-esterase protein; SGNH-hydrolase fold, swiss roll, envelope protein, glycoprot hemagglutinin, membrane, transmembrane, virion; HET: NAG; 2.10A {Porcine torovirus} PDB: 3i1l_A*
Probab=0.23 E-value=7.3e+03 Score=18.85 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=0.0
Q ss_pred cccccccCCCCccccc
Q psy6177 642 QECTKAKNMPSQECTK 657 (870)
Q Consensus 642 ~d~Tepq~~PS~dITe 657 (870)
+||+.++++-+.||..
T Consensus 25 SDC~n~~~p~slDi~~ 40 (377)
T 3i1k_A 25 SDCGNKHTPKSLDIPQ 40 (377)
T ss_dssp GCTTSTTTTTTCSSCG
T ss_pred ccccCCCCcccccCCH
Done!