Query psy6177
Match_columns 870
No_of_seqs 17 out of 19
Neff 1.6
Searched_HMMs 13730
Date Fri Aug 16 19:42:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6177.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6177hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u3da2 c.28.1.1 (A:13-197) Cr 0.5 2.1E+03 0.15 16.8 2.3 8 838-845 171-178 (185)
2 d2fg1a1 c.50.1.2 (A:2-155) Hyp 0.4 1.7E+03 0.13 16.5 1.1 8 740-747 6-13 (154)
3 d1uoza_ c.6.1.1 (A:) Putative 0.3 2.2E+03 0.16 19.3 0.8 12 857-868 83-94 (301)
4 d1k8kf_ d.198.2.1 (F:) ARPC4 ( 0.3 2.4E+03 0.17 18.2 0.6 18 638-656 23-40 (167)
5 d1fx0a3 c.37.1.11 (A:97-372) C 0.3 1.9E+03 0.14 19.0 -0.1 25 634-658 243-267 (276)
6 d1kcpa_ g.3.6.1 (A:) Conotoxin 0.3 2.3E+03 0.17 13.6 0.1 10 860-869 4-13 (27)
7 g1pnb.1 a.52.1.3 (A:,B:) Napin 0.2 2.7E+03 0.2 16.0 0.6 7 514-520 85-91 (106)
8 d1zeea1 a.266.1.2 (A:6-392) Hy 0.2 2.6E+03 0.19 19.9 0.5 16 687-702 87-102 (387)
9 d1gcya1 b.71.1.1 (A:358-418) G 0.2 3.2E+03 0.23 14.9 0.9 25 741-765 32-56 (61)
10 d1rooa_ g.19.1.1 (A:) Sea anem 0.2 3E+03 0.22 13.7 0.6 7 518-524 7-13 (35)
No 1
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=0.54 E-value=2.1e+03 Score=16.76 Aligned_cols=8 Identities=25% Similarity=0.273 Sum_probs=3.0
Q ss_pred Cccccccc
Q psy6177 838 PSQECTKA 845 (870)
Q Consensus 838 PSgDITEP 845 (870)
+++||.++
T Consensus 171 ~~~~~~~~ 178 (185)
T d1u3da2 171 ISGDVSKC 178 (185)
T ss_dssp CBTTGGGS
T ss_pred CCcccCCC
Confidence 33333333
No 2
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=0.44 E-value=1.7e+03 Score=16.52 Aligned_cols=8 Identities=13% Similarity=0.111 Sum_probs=3.7
Q ss_pred Cccccccc
Q psy6177 740 SQECTKAK 747 (870)
Q Consensus 740 SgDITEPQ 747 (870)
.||||+|+
T Consensus 6 ~GDi~~~~ 13 (154)
T d2fg1a1 6 KGDATAPI 13 (154)
T ss_dssp ESCTTSCC
T ss_pred eCccCCcC
Confidence 34444443
No 3
>d1uoza_ c.6.1.1 (A:) Putative cellulase Rv0062 (Cel6, CelA1) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=0.31 E-value=2.2e+03 Score=19.27 Aligned_cols=12 Identities=17% Similarity=0.575 Sum_probs=7.6
Q ss_pred CCCCchhhhhcc
Q psy6177 857 KNMPSQECTNHI 868 (870)
Q Consensus 857 iteP~~d~~~~~ 868 (870)
-+.|-|||..|.
T Consensus 83 Y~lP~RDC~a~a 94 (301)
T d1uoza_ 83 YGIPHRDCGSYA 94 (301)
T ss_dssp CCCTTBGGGSTT
T ss_pred eCCCCCchhhhc
Confidence 466777776553
No 4
>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}
Probab=0.28 E-value=2.4e+03 Score=18.21 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=8.6
Q ss_pred CCCCcccccccCCCCcccc
Q psy6177 638 NMPSQECTKAKNMPSQECT 656 (870)
Q Consensus 638 ~~PS~d~Tepq~~PS~dIT 656 (870)
|+|| +..|-.+-|.+++.
T Consensus 23 nf~S-q~vErhnkPEVE~~ 40 (167)
T d1k8kf_ 23 NFSS-QVVERHNKPEVEVR 40 (167)
T ss_dssp CCCC-SSSTTCCCCHHHHC
T ss_pred hCch-hhHhhcCCCceeec
Confidence 4444 23455555555553
No 5
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=0.27 E-value=1.9e+03 Score=19.01 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=12.0
Q ss_pred cccCCCCCcccccccCCCCcccccc
Q psy6177 634 TKAKNMPSQECTKAKNMPSQECTKA 658 (870)
Q Consensus 634 T~~q~~PS~d~Tepq~~PS~dITep 658 (870)
+..+-|-|.++-+-..||.+||..+
T Consensus 243 ~dg~i~Lsr~la~~g~~PAId~l~S 267 (276)
T d1fx0a3 243 TDGQIFLSADLFNAGIRPAINVGIS 267 (276)
T ss_dssp SSCBCCCCSSSSSSSCSSCCCTTTC
T ss_pred cCeEEEECHHHHhCCCCCCcCCCcc
Confidence 3344444455555555555555443
No 6
>d1kcpa_ g.3.6.1 (A:) Conotoxin {Conus purpurascens, kappa-pVIIa [TaxId: 41690]}
Probab=0.25 E-value=2.3e+03 Score=13.58 Aligned_cols=10 Identities=40% Similarity=1.112 Sum_probs=5.8
Q ss_pred CchhhhhccC
Q psy6177 860 PSQECTNHIN 869 (870)
Q Consensus 860 P~~d~~~~~~ 869 (870)
|.|.|..|+.
T Consensus 4 pnqkcfqhld 13 (27)
T d1kcpa_ 4 PNQKCFQHLD 13 (27)
T ss_dssp TTSBCCTTCC
T ss_pred CcHHHHHHHH
Confidence 5566666653
No 7
>g1pnb.1 a.52.1.3 (A:,B:) Napin BNIb {Rape (Brassica napus) [TaxId: 3708]}
Probab=0.25 E-value=2.7e+03 Score=15.95 Aligned_cols=7 Identities=57% Similarity=0.885 Sum_probs=0.0
Q ss_pred hccCCCc
Q psy6177 514 KAKNMPS 520 (870)
Q Consensus 514 ~~~~~PS 520 (870)
.|+|+||
T Consensus 85 ~A~~LP~ 91 (106)
T g1pnb.1 85 IAKNLPN 91 (106)
T ss_dssp HCCSCSC
T ss_pred HHHhCcc
No 8
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=0.24 E-value=2.6e+03 Score=19.88 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=0.0
Q ss_pred cccccccCCCcccccc
Q psy6177 687 ECTKAKNMPSQECTKA 702 (870)
Q Consensus 687 DITEPQRdpSsDITEP 702 (870)
.||||-|..++.+.|+
T Consensus 87 ~i~ep~re~~~p~~ea 102 (387)
T d1zeea1 87 EITEPTRETTSPLLEA 102 (387)
T ss_dssp TSSCTTTCSSCSCHHH
T ss_pred cCCCccccccCchhhh
No 9
>d1gcya1 b.71.1.1 (A:358-418) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}
Probab=0.24 E-value=3.2e+03 Score=14.87 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=0.0
Q ss_pred ccccccccCCCccccccccCCCccc
Q psy6177 741 QECTKAKNMPSQECTKAKNMPSQEC 765 (870)
Q Consensus 741 gDITEPQrdPSgDITEPQr~pSgDI 765 (870)
+++..|--..||+.+.+-+...|-|
T Consensus 32 SnlssP~qVasGsfs~a~N~dnG~v 56 (61)
T d1gcya1 32 SDLGNPGQVASGSFSEAVNASNGQV 56 (61)
T ss_dssp CCCCCGGGTCCSCCEEEEEETTTTE
T ss_pred CCCCCccccccchHHHhhhccCCcE
No 10
>d1rooa_ g.19.1.1 (A:) Sea anemone toxin k {Sun anemone (Stichodactyla helianthus), SHK [TaxId: 6123]}
Probab=0.23 E-value=3e+03 Score=13.71 Aligned_cols=7 Identities=43% Similarity=1.179 Sum_probs=0.0
Q ss_pred CCccccc
Q psy6177 518 MPSQECT 524 (870)
Q Consensus 518 ~PS~d~T 524 (870)
||-++||
T Consensus 7 ~pks~ct 13 (35)
T d1rooa_ 7 IPKSRCT 13 (35)
T ss_dssp SCGGGCC
T ss_pred Cchhhhh
Done!