BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6178
(912 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex
Length = 963
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 215/976 (22%), Positives = 401/976 (41%), Gaps = 114/976 (11%)
Query: 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSA 65
+++ V +H LY +PN K A +WL Q Q S AW + ++L Q + E YF A
Sbjct: 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLL--QPDKVPEIQYFGA 79
Query: 66 QTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQXXXXXXXXXXQM--SA 123
+ K+ + ++P++ + SL+ L + R S K ++T+ M A
Sbjct: 80 SALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGS-KIVLTRLCVALASLALSMMPDA 138
Query: 124 WEKPVVYIIE-------KLSHKGSIXXXXXXXXXXXXXXXXXKLGKNRREEFEEELKAAG 176
W V ++ + +G +L + R+ L
Sbjct: 139 WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVEC 198
Query: 177 PIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDC---VSALLPILEYNNNF 233
V L+ ++ KVLKCF+SW L DC + A L+ + F
Sbjct: 199 GAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ--LEVPLQDCEALIQAAFAALQDSELF 256
Query: 234 DA-----------------VN--LNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELA 274
D+ VN L + +L L+EQ AV + D+E C++ L
Sbjct: 257 DSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALG 316
Query: 275 ESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILY 334
E+ R + + + Q F + +++++ C G + N +S+T WY L + +
Sbjct: 317 ENH-SRALLDQVEHWQSF-LALVNMIMFCTGIPGHYPVN--ETTSSLTLTFWYTLQDDIL 372
Query: 335 VKNDDSLTV---LFKPHVERLIGALCKHCQXXXXXXX---XXXXXXXFYDFRLKVSELVK 388
+ V +++P +L+ L Q F +R+ +S+ +
Sbjct: 373 SFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLM 432
Query: 389 DVVFIVGSSTCFRHMFNSL------HENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKV 442
V ++G+ ++++ L E W+ TEA LY QS+A+ + +DVVP +
Sbjct: 433 YVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGL 491
Query: 443 VEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANA 502
+ I + S ++ + T + +G L EW+ HP + ++L +LH L P L+ + +
Sbjct: 492 IGLIPRISIS-NVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSVSSVST 550
Query: 503 LQSISTACCTHMVGHFNGLLQIIQCLDTLSI-SNDAAIGLLKGVAIIVSDMPQDQISEAL 561
L+ I C + + ++ + Q + I + L++ + ++S + Q+ E L
Sbjct: 551 LKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL---QVEEIL 607
Query: 562 KQLCLVQVKPLCELIEKQIK--PEKNKKSDPVIWLDRLAAIF----------KHTSPR-- 607
K L + + P + +EK + P + K V L L+ +F H P
Sbjct: 608 KNLHSL-ISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELR 666
Query: 608 ---IMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEP 664
+ P+P V+ +++ ++ K + DA+V+E +++ + DFA ++
Sbjct: 667 KLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQ 726
Query: 665 LVKQIVVLYSKHPHSSFLYLGSILVDEYATSHC----VSGLLDMVQAFLPPTYAILQEED 720
L + + +YS P +S L L LV +A + L +V + T + Q+
Sbjct: 727 LCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSV---TLTLFQQ-- 781
Query: 721 GLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSF-ISSVMQCGILATHLDHREANSTVMKFF 779
G ++HPD VD +L + L+R P FL + +V QC +LA FF
Sbjct: 782 GPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFF 841
Query: 780 YDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMM 839
+L+ + G+ ++V + +V + G+ L+ +L+A +M
Sbjct: 842 TELL-------PRCGEVESVGK------------VVQEDGRMLLIAVLEAIGGQASRSLM 882
Query: 840 ADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAA--TPEQLIEFHSQVTRSE-S 896
AD+L+ L + + W+++ + P G +A +PEQ F Q+ R +
Sbjct: 883 DCFADILFALNKHCFSLLSMWIKEALQ------PPGFPSARLSPEQKDTFSQQILRERVN 936
Query: 897 AYDVGQALKELSRLYR 912
V + +KE + L R
Sbjct: 937 KRRVKEMVKEFTLLCR 952
>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex
Length = 963
Score = 152 bits (384), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 213/977 (21%), Positives = 387/977 (39%), Gaps = 116/977 (11%)
Query: 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSA 65
+++ V +H LY +PN K A +WL Q Q S AW + ++L Q + E YF A
Sbjct: 22 TVENVEKALHQLYYDPNIENKNLAQKWLXQAQVSPQAWHFSWQLL--QPDKVPEIQYFGA 79
Query: 66 QTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQXXXXXXXXXXQM---S 122
+ K+ + ++P++ + SL+ L + R SG I+
Sbjct: 80 SALHIKISRYWSDIPTDQYESLKAQLFTQITRF--ASGSKIVLTRLCVALASLALSXXPD 137
Query: 123 AWEKPVVYIIE-------KLSHKGSIXXXXXXXXXXXXXXXXXKLGKNRREEFEEELKAA 175
AW V + + +G +L + R+ L
Sbjct: 138 AWPCAVADXVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVE 197
Query: 176 GPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDC---VSALLPILEYNNN 232
V L+ ++ KVLKCF+SW L DC + A L+ +
Sbjct: 198 CGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ--LEVPLQDCEALIQAAFAALQDSEL 255
Query: 233 FDA-----------------VN--LNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTEL 273
FD+ VN L + +L L+EQ AV + D E C++ L
Sbjct: 256 FDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDXETSHGICRIAVAL 315
Query: 274 AESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEIL 333
E+ R + + + Q F + ++ + C G + N +S+T WY L + +
Sbjct: 316 GENH-SRALLDQVEHWQSF-LALVNXIXFCTGIPGHYPVN--ETTSSLTLTFWYTLQDDI 371
Query: 334 YVKNDDSLTV---LFKPHVERLIGALCKHCQXXXXXXX---XXXXXXXFYDFRLKVSELV 387
+ V +++P +L+ L Q F +R+ +S+ +
Sbjct: 372 LSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTL 431
Query: 388 KDVVFIVGSSTCFRHMFNSL------HENNVMWEQTEAALYIMQSVAKNVLPEENDVVPK 441
V +G+ ++++ L E W+ TEA LY QS+A+ + +DVVP
Sbjct: 432 XYVYEXLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPG 490
Query: 442 VVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTAN 501
++ I + S ++ + T +G L EW+ HP + ++L +LH L P L+ + +
Sbjct: 491 LIGLIPRISIS-NVQLADTVXFTIGALSEWLADHPVXINSVLPLVLHALGNPELSVSSVS 549
Query: 502 ALQSISTACCTHMVGHFNGLLQIIQCLDTLSI-SNDAAIGLLKGVAIIVSDMPQDQISEA 560
L+ I C + + ++ + Q + I L + + ++S + Q+ E
Sbjct: 550 TLKKICRECKYDLPPYAANIVAVSQDVLXKQIHKTSQCXWLXQALGFLLSAL---QVEEI 606
Query: 561 LKQLCLVQVKPLCELIEKQIK--PEKNKKSDPVIWLDRLAAIF----------KHTSPR- 607
LK L + + P + +EK + P + K V L L+ +F H P
Sbjct: 607 LKNLHSL-ISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPEL 665
Query: 608 ----IMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLE 663
+ P+P V+ +++ ++ K + DA+V+E +++ + DFA +
Sbjct: 666 RKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPXVP 725
Query: 664 PLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHC----VSGLLDMVQAFLPPTYAILQEE 719
L + + YS P +S L L LV +A + L +V + T + Q+
Sbjct: 726 QLCEXLGRXYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSV---TLTLFQQ- 781
Query: 720 DGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSF-ISSVMQCGILATHLDHREANSTVMKF 778
G ++HPD VD +L + L+R P FL + +V QC +LA F
Sbjct: 782 -GPRDHPDIVDSFXQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGF 840
Query: 779 FYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYM 838
F +L+ + G+ ++V + +V + G+ L+ +L+A +
Sbjct: 841 FTELL-------PRCGEVESVGK------------VVQEDGRXLLIAVLEAIGGQASRSL 881
Query: 839 MADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAA--TPEQLIEFHSQVTRSE- 895
AD+L+ L + + W+++ + P G +A +PEQ F Q+ R
Sbjct: 882 XDCFADILFALNKHCFSLLSXWIKEALQ------PPGFPSARLSPEQKDTFSQQILRERV 935
Query: 896 SAYDVGQALKELSRLYR 912
+ V + +KE + L R
Sbjct: 936 NKRRVKEXVKEFTLLCR 952
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 971
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/345 (18%), Positives = 154/345 (44%), Gaps = 19/345 (5%)
Query: 414 WEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLP-PSTHIAVRYTSLLLLGELCEWI 472
W + EA +Y QSVA++ EE +P+++ + +P ++ + T+L +G C W+
Sbjct: 478 WTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWL 537
Query: 473 DKHPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQC-LDTL 531
++P + +N L+ L A T L+ + C + + + LL L+T
Sbjct: 538 MENPAYIPPAINLLVRGLNSSMSAQATL-GLKELCRDCQLQLKPYADPLLNACHASLNTG 596
Query: 532 SISNDAAIGLLKGVAIIVSDMPQDQISEALKQL---CLVQVKPLCELIEKQIKPEKNKKS 588
+ N ++ L+ + ++S + ++I + L + C +++ +C+ K P ++
Sbjct: 597 RMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSK--TPAARIRT 654
Query: 589 DPVIWLDRLAAIFKHTSPRI----MSEP--HPCQGVITELWPVLSKTCETYQQDARVMEH 642
+ L+ ++ +F + + +P P V+ P+ + E + ++ V+E
Sbjct: 655 --IFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEA 712
Query: 643 SSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLG-SILVDEYATSHCVSGL 701
+ +++AI + F +L+ L IV + + L + + +V + C +
Sbjct: 713 ACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAPTLEISKTAIVMFFKDEGCKPLM 772
Query: 702 LDMVQAFLPPTYAILQE--EDGLKNHPDTVDDLFRLCTRFLQRAP 744
+++ F+ ++ + + E N DT++ F T+ +++ P
Sbjct: 773 QQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIP 817
>pdb|2O01|A Chain A, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 754
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 799 VSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVF----SLHTYMMADVADVL------YE 848
V + D R+ + D V +H A++S+L C+F S Y+ D L +
Sbjct: 415 VRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFS 474
Query: 849 LISVDRQ-VSNQWLQDTISQLPKNTPAGMNAAT 880
++ Q V QW+Q+T + P T G A+T
Sbjct: 475 DTAIQLQPVFAQWIQNTHALAPGTTAPGATAST 507
>pdb|3LW5|A Chain A, Improved Model Of Plant Photosystem I
Length = 738
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 799 VSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVF----SLHTYMMADVADVL------YE 848
V + D R+ + D V +H A++S+L C+F S Y+ D L +
Sbjct: 399 VRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFS 458
Query: 849 LISVDRQ-VSNQWLQDTISQLPKNTPAGMNAAT 880
++ Q V QW+Q+T + P T G A+T
Sbjct: 459 DTAIQLQPVFAQWIQNTHALAPGTTAPGATAST 491
>pdb|2WSC|A Chain A, Improved Model Of Plant Photosystem I
pdb|2WSE|A Chain A, Improved Model Of Plant Photosystem I
pdb|2WSF|A Chain A, Improved Model Of Plant Photosystem I
Length = 758
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 799 VSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVF----SLHTYMMADVADVL------YE 848
V + D R+ + D V +H A++S+L C+F S Y+ D L +
Sbjct: 419 VRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFS 478
Query: 849 LISVDRQ-VSNQWLQDTISQLPKNTPAGMNAAT 880
++ Q V QW+Q+T + P T G A+T
Sbjct: 479 DTAIQLQPVFAQWIQNTHALAPGTTAPGATAST 511
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 22/152 (14%)
Query: 435 ENDVVPKVVEAILHLPPSTHI-AVRYTSLLLLGE--LCEWIDKHPHTLETILNFLLHCLQ 491
E V P++VE +LH PS I A+R ++ G+ + I H L +L+ L L+
Sbjct: 284 EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDH-QALPCLLSLLTQNLK 342
Query: 492 QP-------GLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKG 544
+ ++++TA I ++G LLQ + I +AA
Sbjct: 343 KSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAE----FDIKKEAAW----A 394
Query: 545 VAIIVSDMPQDQISEALKQLCLVQVKPLCELI 576
++ S DQI + + C +KPLC+L+
Sbjct: 395 ISNATSGGSHDQIKYLVSEGC---IKPLCDLL 423
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 22/152 (14%)
Query: 435 ENDVVPKVVEAILHLPPSTHI-AVRYTSLLLLGE--LCEWIDKHPHTLETILNFLLHCLQ 491
E V P++VE +LH PS I A+R ++ G+ + I H L +L+ L L+
Sbjct: 246 EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDH-QALPCLLSLLTQNLK 304
Query: 492 QP-------GLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKG 544
+ ++++TA I ++G LLQ + I +AA
Sbjct: 305 KSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAE----FDIKKEAAW----A 356
Query: 545 VAIIVSDMPQDQISEALKQLCLVQVKPLCELI 576
++ S DQI + + C +KPLC+L+
Sbjct: 357 ISNATSGGSHDQIKYLVSEGC---IKPLCDLL 385
>pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|A Chain A, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|B Chain B, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
Length = 723
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 28/119 (23%)
Query: 415 EQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK 474
E+ A ++ KN +P +V + + LP HI V YT+LL+ ELC+
Sbjct: 309 ERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLI--ELCK---- 362
Query: 475 HPHTLETILNFLLHCLQQPGLASVTANA-------LQSISTACCTHMVGHFNGLLQIIQ 526
LQ L V A A L +++T C + F+ L Q
Sbjct: 363 ---------------LQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQ 406
>pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
Length = 757
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 28/119 (23%)
Query: 415 EQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK 474
E+ A ++ KN +P +V + + LP HI V YT+LL+ ELC+
Sbjct: 309 ERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLI--ELCK---- 362
Query: 475 HPHTLETILNFLLHCLQQPGLASVTANA-------LQSISTACCTHMVGHFNGLLQIIQ 526
LQ L V A A L +++T C + F+ L Q
Sbjct: 363 ---------------LQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQ 406
>pdb|1N52|A Chain A, Cap Binding Complex
pdb|1N54|A Chain A, Cap Binding Complex M7gpppg Free
pdb|3FEX|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 790
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 28/119 (23%)
Query: 415 EQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK 474
E+ A ++ KN +P +V + + LP HI V YT+LL+ ELC+
Sbjct: 328 ERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLI--ELCK---- 381
Query: 475 HPHTLETILNFLLHCLQQPGLASVTANA-------LQSISTACCTHMVGHFNGLLQIIQ 526
LQ L V A A L +++T C + F+ L Q
Sbjct: 382 ---------------LQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQ 425
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 28/119 (23%)
Query: 415 EQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK 474
E+ A ++ KN +P +V + + LP HI V YT+LL+ ELC+
Sbjct: 309 ERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLI--ELCK---- 362
Query: 475 HPHTLETILNFLLHCLQQPGLASVTANA-------LQSISTACCTHMVGHFNGLLQIIQ 526
LQ L V A A L +++T C + F+ L Q
Sbjct: 363 ---------------LQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQ 406
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,494,755
Number of Sequences: 62578
Number of extensions: 911924
Number of successful extensions: 2102
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2079
Number of HSP's gapped (non-prelim): 16
length of query: 912
length of database: 14,973,337
effective HSP length: 108
effective length of query: 804
effective length of database: 8,214,913
effective search space: 6604790052
effective search space used: 6604790052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)