Query psy6178
Match_columns 912
No_of_seqs 210 out of 1492
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 19:43:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2022|consensus 100.0 2.4E-95 5E-100 788.2 80.6 878 1-912 1-975 (982)
2 KOG2081|consensus 100.0 2.8E-66 6E-71 542.5 50.6 527 27-571 2-557 (559)
3 KOG2021|consensus 100.0 6E-64 1.3E-68 532.7 60.5 860 7-909 2-974 (980)
4 KOG2023|consensus 100.0 1.2E-46 2.6E-51 396.1 40.3 714 4-859 9-783 (885)
5 COG5101 CRM1 Importin beta-rel 100.0 2.8E-43 6.2E-48 367.6 63.6 857 4-909 10-1026(1053)
6 KOG2171|consensus 100.0 1.3E-43 2.8E-48 400.2 64.4 595 7-673 3-615 (1075)
7 KOG1241|consensus 100.0 8.3E-31 1.8E-35 282.1 55.6 614 20-705 12-682 (859)
8 COG5215 KAP95 Karyopherin (imp 100.0 5.4E-25 1.2E-29 229.2 62.9 596 8-674 4-649 (858)
9 KOG1991|consensus 100.0 5.7E-25 1.2E-29 244.7 64.0 623 7-675 3-693 (1010)
10 KOG2020|consensus 100.0 4E-24 8.7E-29 248.5 55.4 856 7-906 9-1004(1041)
11 KOG1992|consensus 99.9 2.4E-20 5.1E-25 203.3 55.1 705 6-784 3-793 (960)
12 KOG2274|consensus 99.8 1.8E-15 3.9E-20 167.5 53.8 719 9-786 5-840 (1005)
13 COG5656 SXM1 Importin, protein 99.8 9E-13 2E-17 143.0 64.2 611 10-673 5-690 (970)
14 KOG1410|consensus 99.8 3.7E-12 7.9E-17 136.5 64.6 752 6-786 3-939 (1082)
15 KOG1993|consensus 99.6 1.9E-10 4.2E-15 126.3 52.6 172 10-189 2-183 (978)
16 PF08767 CRM1_C: CRM1 C termin 99.5 9.6E-13 2.1E-17 139.5 24.2 226 658-911 65-314 (319)
17 KOG2171|consensus 99.5 2.3E-07 4.9E-12 107.9 65.8 606 58-750 94-771 (1075)
18 PF08389 Xpo1: Exportin 1-like 99.4 4.1E-12 8.8E-17 120.7 11.5 106 103-208 1-114 (148)
19 COG5657 CSE1 CAS/CSE protein i 99.4 2.6E-07 5.6E-12 104.4 50.0 158 20-189 15-181 (947)
20 KOG1241|consensus 99.3 1.2E-06 2.7E-11 96.9 48.8 405 343-779 398-853 (859)
21 KOG1824|consensus 99.1 6.8E-05 1.5E-09 85.2 52.3 188 478-675 428-622 (1233)
22 COG5215 KAP95 Karyopherin (imp 98.9 0.00016 3.5E-09 77.8 44.5 373 343-746 400-814 (858)
23 PF03810 IBN_N: Importin-beta 98.8 5.9E-09 1.3E-13 86.1 6.7 67 29-96 1-76 (77)
24 KOG2023|consensus 98.8 3.6E-05 7.9E-10 84.2 36.7 213 436-670 388-609 (885)
25 PF08506 Cse1: Cse1; InterPro 98.6 1.2E-06 2.6E-11 94.5 17.9 191 297-503 143-370 (370)
26 KOG0915|consensus 98.4 0.0021 4.6E-08 77.4 38.1 328 297-694 958-1307(1702)
27 KOG1242|consensus 98.4 2.7E-05 5.9E-10 85.5 19.9 194 343-553 208-447 (569)
28 KOG4541|consensus 98.3 0.001 2.2E-08 71.5 28.7 375 495-909 313-739 (748)
29 KOG1824|consensus 98.2 0.032 6.9E-07 64.5 60.4 160 412-575 491-663 (1233)
30 PF01602 Adaptin_N: Adaptin N 97.9 0.11 2.3E-06 60.9 40.3 439 19-545 52-519 (526)
31 KOG0213|consensus 97.8 0.099 2.1E-06 58.9 45.5 379 373-784 726-1142(1172)
32 PF03378 CAS_CSE1: CAS/CSE pro 97.7 0.0006 1.3E-08 75.5 15.3 212 511-786 17-231 (435)
33 KOG0915|consensus 97.7 0.067 1.4E-06 65.2 30.9 333 391-787 949-1309(1702)
34 KOG1991|consensus 97.5 0.38 8.1E-06 56.6 47.1 151 419-579 391-559 (1010)
35 KOG0212|consensus 97.4 0.21 4.5E-06 54.8 27.7 346 414-785 14-407 (675)
36 PTZ00429 beta-adaptin; Provisi 97.4 0.58 1.3E-05 55.7 36.8 124 18-153 77-208 (746)
37 PF01602 Adaptin_N: Adaptin N 97.1 1 2.2E-05 52.6 35.4 200 415-653 94-297 (526)
38 KOG1062|consensus 96.9 1.3 2.8E-05 51.1 34.3 192 299-525 354-560 (866)
39 PF10508 Proteasom_PSMB: Prote 96.8 1.6 3.4E-05 50.3 30.7 136 414-553 52-192 (503)
40 PF12755 Vac14_Fab1_bd: Vacuol 96.5 0.0081 1.7E-07 51.2 6.9 89 417-506 3-94 (97)
41 PF12755 Vac14_Fab1_bd: Vacuol 96.5 0.031 6.6E-07 47.7 10.0 73 458-530 3-78 (97)
42 COG5181 HSH155 U2 snRNP splice 96.4 2.2 4.8E-05 47.6 27.2 271 435-747 598-876 (975)
43 KOG1248|consensus 96.1 5.3 0.00011 48.5 59.4 186 636-856 710-903 (1176)
44 COG5181 HSH155 U2 snRNP splice 96.0 2.1 4.5E-05 47.8 22.7 127 378-512 745-874 (975)
45 KOG0213|consensus 95.8 4.8 0.0001 46.2 35.9 367 379-787 492-873 (1172)
46 KOG1059|consensus 95.6 5.5 0.00012 45.6 29.7 54 81-138 139-193 (877)
47 PF13513 HEAT_EZ: HEAT-like re 95.6 0.0048 1E-07 46.6 1.1 54 414-467 1-54 (55)
48 PF12460 MMS19_C: RNAPII trans 95.4 5.9 0.00013 44.5 29.7 57 728-785 339-395 (415)
49 KOG2274|consensus 95.4 1.9 4.1E-05 50.5 20.8 237 425-678 513-764 (1005)
50 KOG1242|consensus 95.3 6.7 0.00015 44.3 33.9 259 399-664 175-456 (569)
51 PTZ00429 beta-adaptin; Provisi 95.2 9.6 0.00021 45.7 37.4 106 437-547 136-245 (746)
52 PF12348 CLASP_N: CLASP N term 94.9 0.29 6.2E-06 49.9 12.0 138 410-553 17-163 (228)
53 cd00020 ARM Armadillo/beta-cat 94.8 0.024 5.3E-07 50.9 3.4 104 399-508 8-120 (120)
54 PF03378 CAS_CSE1: CAS/CSE pro 94.7 5.5 0.00012 44.5 21.9 283 477-784 22-324 (435)
55 PF13513 HEAT_EZ: HEAT-like re 94.1 0.035 7.7E-07 41.8 2.2 52 455-506 1-55 (55)
56 KOG2956|consensus 94.1 3.1 6.8E-05 45.2 17.1 172 464-666 316-492 (516)
57 PF10508 Proteasom_PSMB: Prote 93.3 19 0.00041 41.5 28.7 304 411-745 88-424 (503)
58 PF14500 MMS19_N: Dos2-interac 93.2 2.2 4.8E-05 44.1 14.2 230 452-703 10-250 (262)
59 PF08506 Cse1: Cse1; InterPro 93.1 16 0.00035 40.0 21.6 125 639-770 227-361 (370)
60 KOG0166|consensus 93.0 1 2.2E-05 50.2 11.9 213 414-652 166-393 (514)
61 PF12348 CLASP_N: CLASP N term 92.5 8.3 0.00018 39.1 17.5 185 454-661 20-215 (228)
62 PF02985 HEAT: HEAT repeat; I 92.5 0.18 3.9E-06 32.6 3.3 29 482-510 1-31 (31)
63 COG5064 SRP1 Karyopherin (impo 92.1 1.1 2.3E-05 46.3 9.8 212 413-650 129-354 (526)
64 KOG0168|consensus 92.1 30 0.00066 40.8 28.1 149 482-657 215-369 (1051)
65 PF04826 Arm_2: Armadillo-like 92.0 7.4 0.00016 40.0 16.0 231 394-643 9-253 (254)
66 smart00802 UME Domain in UVSB 91.5 3.2 7E-05 36.1 10.9 91 478-571 8-104 (107)
67 KOG1059|consensus 91.4 14 0.00031 42.5 18.2 99 418-524 125-226 (877)
68 PF13646 HEAT_2: HEAT repeats; 91.3 0.67 1.5E-05 38.7 6.6 82 402-503 3-87 (88)
69 PF13646 HEAT_2: HEAT repeats; 90.9 1.7 3.6E-05 36.3 8.7 56 440-507 2-59 (88)
70 PF05918 API5: Apoptosis inhib 90.9 19 0.0004 41.3 19.0 52 619-670 217-274 (556)
71 KOG4653|consensus 90.9 19 0.00041 42.5 18.9 186 453-664 739-930 (982)
72 PF12717 Cnd1: non-SMC mitotic 90.8 4.4 9.6E-05 39.3 12.6 141 420-569 8-156 (178)
73 PF08064 UME: UME (NUC010) dom 90.8 3.4 7.4E-05 36.1 10.5 91 479-572 9-105 (107)
74 KOG1992|consensus 89.8 48 0.0011 39.1 43.3 246 636-907 511-787 (960)
75 KOG0212|consensus 89.6 40 0.00088 37.9 28.6 326 296-666 85-421 (675)
76 KOG1058|consensus 89.5 49 0.0011 38.6 23.8 70 452-527 110-181 (948)
77 KOG1943|consensus 89.4 60 0.0013 39.6 32.8 236 439-688 339-610 (1133)
78 PF05918 API5: Apoptosis inhib 88.1 35 0.00075 39.1 18.4 59 454-515 35-95 (556)
79 KOG1060|consensus 88.1 62 0.0013 38.1 31.6 18 879-896 556-573 (968)
80 KOG1240|consensus 87.4 28 0.00061 42.8 17.6 90 418-509 441-538 (1431)
81 PF02985 HEAT: HEAT repeat; I 87.1 0.46 1E-05 30.7 1.9 28 444-471 3-30 (31)
82 KOG1058|consensus 87.1 68 0.0015 37.5 23.4 155 300-492 322-481 (948)
83 PF08064 UME: UME (NUC010) dom 86.9 14 0.00031 32.2 11.6 101 560-673 4-105 (107)
84 PRK09687 putative lyase; Provi 86.8 14 0.00031 38.8 13.8 125 402-547 27-154 (280)
85 PF08767 CRM1_C: CRM1 C termin 86.1 20 0.00043 38.5 14.7 89 260-360 134-223 (319)
86 KOG1248|consensus 85.6 1E+02 0.0022 38.2 52.0 64 494-558 365-428 (1176)
87 PF10274 ParcG: Parkin co-regu 85.0 11 0.00024 36.2 10.6 87 479-566 36-127 (183)
88 PLN03200 cellulose synthase-in 85.0 1.6E+02 0.0034 39.8 56.6 342 399-787 447-814 (2102)
89 KOG4524|consensus 85.0 55 0.0012 39.4 18.1 60 591-656 821-880 (1014)
90 PF08167 RIX1: rRNA processing 84.6 11 0.00025 35.9 10.9 131 703-863 21-155 (165)
91 KOG0166|consensus 83.8 11 0.00023 42.4 11.4 138 493-652 124-266 (514)
92 KOG1060|consensus 83.8 1E+02 0.0022 36.5 31.7 359 378-785 158-571 (968)
93 cd00020 ARM Armadillo/beta-cat 82.8 2.6 5.6E-05 37.4 5.5 68 438-511 8-81 (120)
94 PF12717 Cnd1: non-SMC mitotic 82.3 18 0.0004 35.0 11.5 53 454-509 1-55 (178)
95 PF08167 RIX1: rRNA processing 82.1 19 0.00041 34.3 11.3 109 413-524 38-159 (165)
96 KOG2160|consensus 81.9 31 0.00067 36.6 13.3 134 410-555 93-245 (342)
97 smart00802 UME Domain in UVSB 81.7 26 0.00056 30.5 10.8 71 592-673 34-105 (107)
98 KOG1240|consensus 81.5 1.5E+02 0.0033 36.9 24.2 140 379-523 594-745 (1431)
99 PF08623 TIP120: TATA-binding 81.2 8.8 0.00019 36.4 8.3 76 454-530 40-116 (169)
100 KOG1943|consensus 80.6 1.5E+02 0.0033 36.4 24.3 133 415-552 443-613 (1133)
101 KOG4653|consensus 79.8 97 0.0021 37.0 17.3 158 398-561 768-928 (982)
102 KOG2022|consensus 79.5 1.5E+02 0.0032 35.6 29.3 162 492-674 477-642 (982)
103 PRK09687 putative lyase; Provi 78.5 92 0.002 32.7 20.3 112 11-136 26-138 (280)
104 PF04388 Hamartin: Hamartin pr 77.3 92 0.002 37.2 17.2 58 725-785 81-141 (668)
105 PF11865 DUF3385: Domain of un 75.7 74 0.0016 30.1 13.2 50 593-651 107-156 (160)
106 KOG1020|consensus 74.0 2.7E+02 0.0059 35.8 26.5 395 413-854 750-1171(1692)
107 PF12460 MMS19_C: RNAPII trans 73.8 1.6E+02 0.0034 33.1 35.4 269 382-671 116-413 (415)
108 PF08389 Xpo1: Exportin 1-like 71.6 2.7 5.9E-05 39.1 2.3 50 454-503 99-148 (148)
109 KOG1061|consensus 71.4 2.2E+02 0.0048 33.7 18.6 151 411-569 171-330 (734)
110 KOG1967|consensus 69.8 72 0.0016 38.3 13.2 179 472-670 807-1001(1030)
111 KOG2753|consensus 67.2 1.7E+02 0.0037 30.8 14.1 75 476-553 102-179 (378)
112 COG5240 SEC21 Vesicle coat com 66.2 1.8E+02 0.0039 33.1 14.6 120 4-137 298-423 (898)
113 PF14500 MMS19_N: Dos2-interac 65.6 1.7E+02 0.0038 30.3 22.6 237 411-669 10-255 (262)
114 PF01603 B56: Protein phosphat 64.5 2.4E+02 0.0052 31.5 17.2 235 412-669 102-345 (409)
115 KOG0168|consensus 62.4 3.5E+02 0.0075 32.6 19.8 72 483-554 169-245 (1051)
116 COG5064 SRP1 Karyopherin (impo 62.2 19 0.00041 37.5 6.1 93 415-509 172-273 (526)
117 KOG1525|consensus 62.1 4.5E+02 0.0098 33.9 23.7 230 593-867 22-267 (1266)
118 PF13251 DUF4042: Domain of un 60.0 1.7E+02 0.0037 28.3 13.3 104 491-603 50-175 (182)
119 PF11865 DUF3385: Domain of un 59.6 1.6E+02 0.0035 27.9 12.3 69 481-550 86-157 (160)
120 PF10363 DUF2435: Protein of u 58.8 1.1E+02 0.0024 25.8 9.3 71 483-555 5-77 (92)
121 KOG1078|consensus 58.2 1.1E+02 0.0025 36.0 11.9 132 375-517 404-541 (865)
122 COG5240 SEC21 Vesicle coat com 58.0 1.4E+02 0.003 34.0 11.9 120 379-507 429-554 (898)
123 PF01603 B56: Protein phosphat 57.6 2.4E+02 0.0052 31.5 14.5 51 812-862 327-381 (409)
124 KOG1967|consensus 56.7 90 0.002 37.5 10.9 84 477-560 905-992 (1030)
125 PF05804 KAP: Kinesin-associat 56.4 4.3E+02 0.0093 31.8 18.5 86 436-525 330-420 (708)
126 PF10363 DUF2435: Protein of u 55.6 64 0.0014 27.2 7.3 61 452-515 14-79 (92)
127 KOG2032|consensus 55.1 3.5E+02 0.0076 30.4 23.1 98 477-579 254-354 (533)
128 PF10441 Urb2: Urb2/Npa2 famil 55.0 2.4E+02 0.0051 28.4 15.1 46 511-556 146-192 (223)
129 KOG1993|consensus 55.0 4.4E+02 0.0096 31.5 31.4 155 495-668 503-663 (978)
130 KOG2956|consensus 54.7 3.5E+02 0.0075 30.2 15.8 84 495-579 422-506 (516)
131 COG5096 Vesicle coat complex, 54.5 1.6E+02 0.0034 35.4 12.6 72 435-509 121-196 (757)
132 cd03568 VHS_STAM VHS domain fa 48.7 2.2E+02 0.0049 26.3 11.9 85 469-553 25-113 (144)
133 PF10441 Urb2: Urb2/Npa2 famil 48.0 3E+02 0.0066 27.6 14.7 137 722-864 48-199 (223)
134 KOG2021|consensus 46.1 5.9E+02 0.013 30.4 30.4 57 453-509 205-261 (980)
135 KOG2025|consensus 45.6 86 0.0019 36.5 8.3 75 435-509 79-156 (892)
136 KOG0211|consensus 44.9 1.3E+02 0.0028 36.2 10.2 18 414-431 571-588 (759)
137 PF10274 ParcG: Parkin co-regu 44.4 76 0.0016 30.6 6.7 54 615-670 74-130 (183)
138 PF12719 Cnd3: Nuclear condens 43.9 4.2E+02 0.009 28.0 19.7 126 420-550 3-143 (298)
139 PF14668 RICTOR_V: Rapamycin-i 43.9 47 0.001 26.6 4.4 52 416-470 3-58 (73)
140 KOG2933|consensus 43.4 1.4E+02 0.003 31.3 8.7 113 398-512 88-203 (334)
141 KOG2213|consensus 40.5 5.2E+02 0.011 28.2 20.3 215 456-691 39-268 (460)
142 COG5096 Vesicle coat complex, 39.1 59 0.0013 38.8 6.1 60 444-508 95-156 (757)
143 PF08349 DUF1722: Protein of u 38.4 1.1E+02 0.0024 27.1 6.6 67 837-910 29-101 (117)
144 KOG4199|consensus 37.6 5.4E+02 0.012 27.5 17.6 61 725-785 255-317 (461)
145 PF12333 Ipi1_N: Rix1 complex 37.4 1.6E+02 0.0034 25.4 7.1 54 478-531 8-64 (102)
146 KOG1062|consensus 36.7 8.3E+02 0.018 29.4 39.9 179 451-648 360-540 (866)
147 KOG2256|consensus 36.3 7.7E+02 0.017 28.9 22.2 222 439-672 243-476 (661)
148 PF14676 FANCI_S2: FANCI solen 36.0 3.8E+02 0.0082 25.3 11.5 78 818-904 52-133 (158)
149 cd08050 TAF6 TATA Binding Prot 35.4 5.1E+02 0.011 28.1 12.3 53 495-547 284-337 (343)
150 PF00514 Arm: Armadillo/beta-c 35.1 73 0.0016 21.8 3.9 25 483-507 14-40 (41)
151 KOG2032|consensus 34.5 7.2E+02 0.016 28.1 14.0 92 436-528 253-350 (533)
152 PF05327 RRN3: RNA polymerase 34.3 8.3E+02 0.018 28.7 18.4 161 379-553 12-196 (563)
153 KOG0414|consensus 33.4 1.1E+02 0.0024 38.0 7.1 117 383-507 897-1026(1251)
154 smart00638 LPD_N Lipoprotein N 33.3 1.1E+02 0.0023 36.1 7.4 136 382-522 375-523 (574)
155 PF10521 DUF2454: Protein of u 33.1 4.2E+02 0.0091 27.8 11.0 147 477-632 115-276 (282)
156 PF04510 DUF577: Family of unk 33.0 4.4E+02 0.0096 25.2 16.8 89 86-190 3-96 (174)
157 TIGR02242 tail_TIGR02242 phage 32.4 2E+02 0.0044 26.1 7.2 54 851-910 45-98 (130)
158 cd03569 VHS_Hrs_Vps27p VHS dom 32.1 4.1E+02 0.0089 24.5 11.9 77 475-551 35-115 (142)
159 KOG2137|consensus 32.1 9.3E+02 0.02 28.6 14.5 97 536-656 365-462 (700)
160 PF07571 DUF1546: Protein of u 31.7 2.7E+02 0.0058 23.5 7.4 67 452-518 17-89 (92)
161 PF05402 PqqD: Coenzyme PQQ sy 31.7 73 0.0016 24.8 3.9 38 2-39 27-64 (68)
162 KOG1061|consensus 31.3 9.8E+02 0.021 28.6 22.2 122 22-155 62-191 (734)
163 cd08050 TAF6 TATA Binding Prot 31.1 6.4E+02 0.014 27.3 12.2 82 413-494 230-322 (343)
164 KOG0567|consensus 30.9 2.6E+02 0.0055 28.7 8.1 86 417-517 173-259 (289)
165 PRK13800 putative oxidoreducta 30.6 1.8E+02 0.004 36.4 9.1 15 453-467 850-864 (897)
166 PF00790 VHS: VHS domain; Int 30.3 4.3E+02 0.0094 24.2 11.7 86 467-552 28-120 (140)
167 KOG0567|consensus 30.0 4.5E+02 0.0097 27.1 9.6 94 394-506 183-278 (289)
168 PF13001 Ecm29: Proteasome sta 29.8 4.2E+02 0.009 30.6 11.1 139 410-554 247-407 (501)
169 KOG0211|consensus 29.2 1.1E+03 0.024 28.6 16.5 175 373-554 447-629 (759)
170 PF05804 KAP: Kinesin-associat 28.0 1.1E+03 0.025 28.4 18.0 222 399-652 373-607 (708)
171 smart00288 VHS Domain present 27.7 4.7E+02 0.01 23.8 11.3 62 469-530 25-90 (133)
172 PF08158 NUC130_3NT: NUC130/3N 26.5 1.1E+02 0.0024 22.6 3.7 42 852-897 8-49 (52)
173 PF04118 Dopey_N: Dopey, N-ter 25.9 8.3E+02 0.018 26.0 21.4 210 638-899 70-284 (307)
174 KOG3723|consensus 25.9 5.6E+02 0.012 29.3 10.3 67 421-494 183-249 (851)
175 PF09184 PPP4R2: PPP4R2; Inte 25.2 2.9E+02 0.0062 29.1 7.9 102 7-114 2-107 (288)
176 PF11698 V-ATPase_H_C: V-ATPas 24.9 2.6E+02 0.0056 24.9 6.3 69 6-77 41-119 (119)
177 PF12397 U3snoRNP10: U3 small 24.8 2.4E+02 0.0052 25.0 6.5 73 437-509 2-75 (121)
178 KOG0414|consensus 24.5 1.4E+03 0.03 29.0 14.1 114 616-743 914-1029(1251)
179 PF11919 DUF3437: Domain of un 24.4 1.4E+02 0.0031 25.1 4.4 53 416-469 5-57 (90)
180 KOG2199|consensus 23.9 5.4E+02 0.012 28.0 9.4 54 464-517 28-83 (462)
181 KOG2038|consensus 23.6 1.3E+03 0.029 27.7 24.1 66 441-509 304-371 (988)
182 KOG1517|consensus 22.8 7.4E+02 0.016 30.9 11.1 95 416-510 573-673 (1387)
183 KOG4224|consensus 22.7 1.8E+02 0.004 31.0 5.7 120 439-570 210-340 (550)
184 PLN03076 ARF guanine nucleotid 22.2 2.1E+03 0.046 29.5 30.1 206 453-670 1149-1403(1780)
185 cd03561 VHS VHS domain family; 22.1 4.2E+02 0.0091 24.0 7.6 91 385-478 19-121 (133)
186 PF11707 Npa1: Ribosome 60S bi 21.9 1E+03 0.022 25.6 14.6 104 725-851 69-187 (330)
187 PF09384 UTP15_C: UTP15 C term 21.8 4.3E+02 0.0093 24.6 7.6 41 475-515 72-112 (148)
188 PF14911 MMS22L_C: S-phase gen 21.7 1.1E+03 0.023 25.9 21.9 88 728-827 227-321 (373)
189 PF12530 DUF3730: Protein of u 21.5 8.5E+02 0.018 24.6 16.6 124 418-549 16-150 (234)
No 1
>KOG2022|consensus
Probab=100.00 E-value=2.4e-95 Score=788.20 Aligned_cols=878 Identities=18% Similarity=0.281 Sum_probs=738.4
Q ss_pred CCCCccHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCC
Q psy6178 1 MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELP 80 (912)
Q Consensus 1 m~~~~~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~ 80 (912)
|+ +..++.|++++..+|++++++.+..+++||+++|++|+||++++.|++..+. .++|||||.||+.||+++|+++|
T Consensus 1 md-~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~--~evqyFGAltL~~ki~~~~e~~~ 77 (982)
T KOG2022|consen 1 MD-SDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKS--SEVQYFGALTLHDKINTRWEECP 77 (982)
T ss_pred CC-chHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCch--hHHHHHhHHHHHHHHHhhhccCC
Confidence 77 6789999999999999999999999999999999999999999999999887 89999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhc-c-CcchHHHHHHHHhccc--------chHHHHHHHHhh
Q psy6178 81 SESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQM-S-AWEKPVVYIIEKLSHK--------GSILALLEVLTV 150 (912)
Q Consensus 81 ~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~-~-~W~~~~~~l~~~~~~~--------~~~~~~L~iL~~ 150 (912)
++++..||..++..+.+++.+ |+.|.||+|.++|.+.+++ + .||+++.+++..++.+ ..++++|++|+.
T Consensus 78 ~~~~~qL~~klf~~l~~~~g~-~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~ 156 (982)
T KOG2022|consen 78 ANEAVQLKLKLFLILSRFAGG-PKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSF 156 (982)
T ss_pred hhHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhcc
Confidence 999999999999999998755 6899999999999999976 4 7999999999999764 346899999999
Q ss_pred hhhhcccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCC--Ch----HHHHHHHHHHHhhcC---------------
Q psy6178 151 LPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGD--NV----SLQTKVLKCFTSWSS--------------- 209 (912)
Q Consensus 151 l~ee~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~--~~----~~~~~~l~~l~sWi~--------------- 209 (912)
+|+|..+.+++..+|..++..+......+..++..+++.+.. .. -.+..+++|..+|+.
T Consensus 157 ~p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~ 236 (982)
T KOG2022|consen 157 MPAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQV 236 (982)
T ss_pred CcHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHH
Confidence 999999988888899999999999999999999988887541 12 357889999999991
Q ss_pred ---------CcchHHHHHHHHh---hch------------hhhccCCchHHHHHHHHHHhc-hHHHHH--HHhcCCC--h
Q psy6178 210 ---------GSLHDAATDCVSA---LLP------------ILEYNNNFDAVNLNVFTCILS-LEEQFH--MAVAHED--L 260 (912)
Q Consensus 210 ---------~~l~~~a~~~l~~---~l~------------~~~~~~~~~~l~~~l~~~v~~-l~~~~~--~~~~~~d--~ 260 (912)
...++++-+|+.. .+. .... ..+...+..+++.... +.+... +...+.| +
T Consensus 237 ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~-~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~ 315 (982)
T KOG2022|consen 237 LLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDC-EFYRNTITLLISICLGILQEVSGKIQEEENADASE 315 (982)
T ss_pred HHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHH-HhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 0111222222111 110 0000 0111223333333222 222211 3455667 6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhcccCC-CcchhhHHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCch
Q psy6178 261 EKCMNYCKLFTELAESLLDRIVNESMTK-QQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDD 339 (912)
Q Consensus 261 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~-~~~~~~~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~ 339 (912)
+....++++++..+|++.+.+.++..++ +..-..++++.|+.|++.|+... +.|.+|..++.||+++.+++.....+
T Consensus 316 e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~yp--veE~~S~~~l~FW~tL~dei~~~~~e 393 (982)
T KOG2022|consen 316 EEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYP--VEEIVSDRTLIFWYTLQDEIMQTINE 393 (982)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCcc--HHHHHhHHHHHHHHHHHHHHHHhhhc
Confidence 7889999999999999999988765222 22223567899999998876541 44889999999999999987754322
Q ss_pred ---hhhhcch-HHHHHHHHHHHhhcCCCCCC---CCCccccchHHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhc--C
Q psy6178 340 ---SLTVLFK-PHVERLIGALCKHCQLEPDL---EGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHE--N 410 (912)
Q Consensus 340 ---~~~~~~~-~~~~~ll~~l~~k~~~p~d~---~~~~ee~~~f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~--~ 410 (912)
.....++ |+|.+|++++++|+.+|.++ +|.+|+++.|+.||++++|+++++|.++|+ ..++.+...+.+ +
T Consensus 394 ~~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd-~ll~~L~~~l~q~~a 472 (982)
T KOG2022|consen 394 TQQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGD-GLLDFLIDTLEQALA 472 (982)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhh
Confidence 2334455 99999999999999999876 578899999999999999999999999995 477777777765 1
Q ss_pred -----CCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCC-CchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHH
Q psy6178 411 -----NVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPP-STHIAVRYTSLLLLGELCEWIDKHPHTLETILN 484 (912)
Q Consensus 411 -----~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~-~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~ 484 (912)
..+|.+.|+|+|++.++++.+..++++.++++|++..+.+. ..+|.+..|+..+||.++.|++.||.+|.+.++
T Consensus 473 a~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~ 552 (982)
T KOG2022|consen 473 AGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLP 552 (982)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHH
Confidence 24599999999999999999998889999999999877764 358999999999999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhh-cCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy6178 485 FLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDT-LSISNDAAIGLLKGVAIIVSDMPQDQISEALKQ 563 (912)
Q Consensus 485 ~l~~~l~~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~-~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ 563 (912)
.+++++++++....|...+.+||++|+.+|.||+++|+..+..+.. ....+.++.++|.+||+|++...+|+..+++.+
T Consensus 553 ~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~ 632 (982)
T KOG2022|consen 553 LLFQGLHNSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMK 632 (982)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence 9999999999888888899999999999999999999999886543 345666899999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcC-------------CCCCChHHHHHhHhHHHHHHH
Q psy6178 564 LCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIM-------------SEPHPCQGVITELWPVLSKTC 630 (912)
Q Consensus 564 l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-------------~~~~~~~~~~~~~~~~l~~~l 630 (912)
+++|+++.++.++.... +....+....+.+.+++++|.++..+.+ ....|++.+.++++|++..++
T Consensus 633 lin~il~qle~~l~~~i-~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~ 711 (982)
T KOG2022|consen 633 LINPILSQLEINLAPGI-DDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVL 711 (982)
T ss_pred HHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999876543 1222244566789999999999866543 122378899999999999999
Q ss_pred HhhccchhHHHHHHHHHHHHHHHhchhh-HHhHHHHHHHHHHHHhcCCCcchHHhHHHHHHHh-cCccchHHHHHHHHHH
Q psy6178 631 ETYQQDARVMEHSSRCLRYAIRCVGKDF-AHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEY-ATSHCVSGLLDMVQAF 708 (912)
Q Consensus 631 ~~~~~~~~v~e~~~~~~~~~~~~l~~~~-~p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~-g~~~~~~~l~~l~~~l 708 (912)
++|.++.+++|.+|...+++++.++..| .|++|.++.+++. |...+...-+.+...++..+ +++.+.+.+...+...
T Consensus 712 s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~ 790 (982)
T KOG2022|consen 712 SMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANA 790 (982)
T ss_pred HHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccchHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 9999999999999999999999999988 9999999999998 88888777778877776554 4477888888888888
Q ss_pred hHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccCc-hhhHHHHH-HHHHhcccCCchhHHHHHHHHHHHhhcc
Q psy6178 709 LPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTS-SFISSVMQ-CGILATHLDHREANSTVMKFFYDLIHNN 786 (912)
Q Consensus 709 ~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~-~~l~~i~~-~~~~~l~~~~~~~~~~~~~fl~~li~~~ 786 (912)
+++.+-++++. .+.++||+...+|+++..++++.|+.+.++ ..++.++. |+..++..+|+.+++++++||+.|+...
T Consensus 791 ~q~sl~lf~~~-~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~ 869 (982)
T KOG2022|consen 791 FQQSLLLFEQH-PFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYA 869 (982)
T ss_pred HHHHHHHHhcc-CCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhc
Confidence 88888888886 579999999999999999999999988874 45666555 9999999999999999999999999887
Q ss_pred CCCCcccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccccCCCcchhhHHHHHHHHHHhChHHHHHHHHHHHh
Q psy6178 787 RVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTIS 866 (912)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~~~~~~~~~~~a~vL~~l~~~~~~~~~~wl~~~l~ 866 (912)
++++ ...+.+++.+.|+.|+++++.+++|..|||.++.+||+|++++++|+.+++.|+.++|.
T Consensus 870 ~s~~-----------------~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~ld~~aDIL~al~~k~~se~r~wl~~~lq 932 (982)
T KOG2022|consen 870 TSHD-----------------LVTVTSVVAEIGPILIYAIMRGVGGEASRSTLDALADILLALNAKFFSETRTWLKAVLQ 932 (982)
T ss_pred ccch-----------------hHHHHHHHHhcchHHHHHHHHHhcCcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 7654 55789999999999999999999999999999999999999999999999999999996
Q ss_pred --cCCCCCCCCCCCCCHHHHHHHHHHHhhhhhh-hhHHHHHHHHHhhcC
Q psy6178 867 --QLPKNTPAGMNAATPEQLIEFHSQVTRSESA-YDVGQALKELSRLYR 912 (912)
Q Consensus 867 --~~p~~~~~~~~~~t~~~k~~f~~~l~~~~~~-~~~~~~~~~F~~~cr 912 (912)
++|+. ++|+++|++|++.+++.|++ |.+++.+.+|+..||
T Consensus 933 ~~gfPs~------~~s~e~k~rf~t~llrer~n~R~~k~~il~~~L~~~ 975 (982)
T KOG2022|consen 933 IPGFPSA------GVSNEIKSRFVTSLLRERGNKRNFKQQILEFNLACT 975 (982)
T ss_pred CCCCCcc------cCChHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhc
Confidence 56654 89999999999999999988 789999999999997
No 2
>KOG2081|consensus
Probab=100.00 E-value=2.8e-66 Score=542.53 Aligned_cols=527 Identities=42% Similarity=0.706 Sum_probs=479.1
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHHHhccCCChhH
Q psy6178 27 EKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNI 106 (912)
Q Consensus 27 ~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~~~~v 106 (912)
.+|.+||.+||+|+++|+.|.++|....+ .+...|||+|+++|++++++++|+.....+|++++++++....+++ .+
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~--~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~-~i 78 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCD--VEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPD-VI 78 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccch--HHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCc-hH
Confidence 47999999999999999999999999755 8999999999999999999999999999999999999998766665 89
Q ss_pred HHHHHHHHHHHHhhccCcchHHHHHHHHhccc-chHHHHHHHHhhhhhhccccc--CChhhHHHHHHHHHhhhhHHHHHH
Q psy6178 107 ITQLALALADLALQMSAWEKPVVYIIEKLSHK-GSILALLEVLTVLPEEVNVLK--LGKNRREEFEEELKAAGPIVIEFL 183 (912)
Q Consensus 107 ~~kl~~~la~l~~~~~~W~~~~~~l~~~~~~~-~~~~~~L~iL~~l~ee~~~~~--~~~~~r~~~~~~l~~~~~~vl~~l 183 (912)
++||+.++|++++++++|.+++.++++..++. ....++|++|+.+|||+.+.+ ...+||.++.+.+....+.++.++
T Consensus 79 ~tQL~vavA~Lal~~~~W~n~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~~l 158 (559)
T KOG2081|consen 79 RTQLAVAVAALALHMPEWVNPIFELVRALSNKHPAVPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLVFL 158 (559)
T ss_pred HHHHHHHHHHHHHHhHhhcchHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999876 447799999999999999844 457899999999999999999999
Q ss_pred HHhhhcCCCC-hHHHHHHHHHHHhhc-------------------------CCcchHHHHHHHHhhchhhhccCCchHHH
Q psy6178 184 KTCQANCGDN-VSLQTKVLKCFTSWS-------------------------SGSLHDAATDCVSALLPILEYNNNFDAVN 237 (912)
Q Consensus 184 ~~~l~~~~~~-~~~~~~~l~~l~sWi-------------------------~~~l~~~a~~~l~~~l~~~~~~~~~~~l~ 237 (912)
..+++.++.+ .+...++++|+.||. .+++++.|++|++.+++...+..+...+-
T Consensus 159 ~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~~~~~~~ 238 (559)
T KOG2081|consen 159 SDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRSEGLPLA 238 (559)
T ss_pred HHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhhccCchh
Confidence 9999987755 778899999999999 46778999999999999877665432344
Q ss_pred HHHHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHhhhcCCCCcccccCcc
Q psy6178 238 LNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGL 317 (912)
Q Consensus 238 ~~l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~e~ 317 (912)
..++.++.-+...+..++..+|.|...++|++|+++|+++...+..++ + +.+.+++.++.+++|++++
T Consensus 239 ~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np--~---~~l~~vellLl~~~h~~~e------- 306 (559)
T KOG2081|consen 239 AILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNP--E---EFLRIVELLLLVAGHNDTE------- 306 (559)
T ss_pred HHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCC--C---cchhHHHHHHHhccCCchh-------
Confidence 445544445566777788899999999999999999999999999877 2 3467899999999999999
Q ss_pred chhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCCCCCccccchHHHHHhHhHHHHHhhhHhcCcH
Q psy6178 318 VASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSS 397 (912)
Q Consensus 318 vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee~~~f~~~R~~~~d~l~~~~~~l~~~ 397 (912)
|.+.+|.||+.+.+.+...+++.....|+|++.++++.+.++++||+|.++..||.++|.+||..++|+++|+..++|.+
T Consensus 307 vie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~ 386 (559)
T KOG2081|consen 307 VIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSD 386 (559)
T ss_pred hhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcH
Confidence 99999999999999999888888889999999999999999999999777778889999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcC
Q psy6178 398 TCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPH 477 (912)
Q Consensus 398 ~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~ 477 (912)
+++.+++.++.+++++|+..||+||.+.+++.++++++++.+|++++.++++|.+.+ +|+|++.++|+|++|+..||+
T Consensus 387 e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q~~--~~~ts~ll~g~~~ew~~~~p~ 464 (559)
T KOG2081|consen 387 ECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQAP--LRYTSILLLGEYSEWVEQHPE 464 (559)
T ss_pred HHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccchh--HHHHHHHHHHHHHHHHHhCcH
Confidence 999999999998899999999999999999999999999999999999999997543 999999999999999999999
Q ss_pred cHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHH
Q psy6178 478 TLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQI 557 (912)
Q Consensus 478 ~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~ 557 (912)
++.++++++..++...+++++|+.|++++|..|+.++.+.++++...+..+.+...+.+... +.+|++.++..+|.++.
T Consensus 465 ~le~v~~~~~~~~~~~~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~e~a~-l~~~~s~i~~~lp~~k~ 543 (559)
T KOG2081|consen 465 LLEPVLRYIRQGLQLKRLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINEEAAC-LLQGISLIISNLPAHKA 543 (559)
T ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHhcCCHhhh
Confidence 99999999999999888999999999999999999999999999999888877666777677 99999999999999999
Q ss_pred HHHHHHHHHHhHHH
Q psy6178 558 SEALKQLCLVQVKP 571 (912)
Q Consensus 558 ~~~l~~l~~p~~~~ 571 (912)
...++.+++|.+..
T Consensus 544 ~~~~~el~~~~l~~ 557 (559)
T KOG2081|consen 544 KIALEELCEPQLRN 557 (559)
T ss_pred hHHHHHHhhHHHhc
Confidence 99999999998754
No 3
>KOG2021|consensus
Probab=100.00 E-value=6e-64 Score=532.71 Aligned_cols=860 Identities=14% Similarity=0.170 Sum_probs=642.9
Q ss_pred HHHHHHHHHHhccC-CChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHH
Q psy6178 7 LDTVYAVVHTLYLN-PNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHV 85 (912)
Q Consensus 7 ~~~v~~al~~l~~~-~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~ 85 (912)
.++++||+.+..+| .|++.|+||-+|+++++.||.||++|.+++...+ ..+.+|||+.+||..+++..+++.+..++.
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~t-s~d~vkf~clqtL~e~vrekyne~nl~elq 80 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINET-SNDLVKFYCLQTLIELVREKYNEANLNELQ 80 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhc-ccchhhhhhHHHHHHHHHHhhccCCHHHHH
Confidence 46799999999988 5899999999999999999999999999998874 258999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--cc---CCChhHHHHHHHHHHHHHhhcc--CcchHHHHHHHHhccc---chHHHHHHHHhhhhhhc
Q psy6178 86 SLRDSLIEHLCRT--ND---TSGKNIITQLALALADLALQMS--AWEKPVVYIIEKLSHK---GSILALLEVLTVLPEEV 155 (912)
Q Consensus 86 ~lk~~Ll~~l~~~--~~---~~~~~v~~kl~~~la~l~~~~~--~W~~~~~~l~~~~~~~---~~~~~~L~iL~~l~ee~ 155 (912)
.+|.++..|+.-. .+ ..|.+++||+++.++.++...+ .|++++.++...++-+ ...+..+++|..+..|+
T Consensus 81 lvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsEi 160 (980)
T KOG2021|consen 81 LVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSEI 160 (980)
T ss_pred HHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhHh
Confidence 9999999998752 22 2245999999999999999765 7999999999988755 45889999999999999
Q ss_pred cc---ccCChh--hHHHHHHHHHhh-hhHHHHHHHHhhhcCC--CChHHHHHHHHHHHh---hc----------------
Q psy6178 156 NV---LKLGKN--RREEFEEELKAA-GPIVIEFLKTCQANCG--DNVSLQTKVLKCFTS---WS---------------- 208 (912)
Q Consensus 156 ~~---~~~~~~--~r~~~~~~l~~~-~~~vl~~l~~~l~~~~--~~~~~~~~~l~~l~s---Wi---------------- 208 (912)
.+ .+.+.+ +.+.+|+.||++ ++.+.+...+++.... .++.+...+++|+++ ||
T Consensus 161 ad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~ 240 (980)
T KOG2021|consen 161 ADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYK 240 (980)
T ss_pred hhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHH
Confidence 88 333332 357799999998 7999998888887542 145666677777765 55
Q ss_pred ---CCcchHHHHHHHHhhchhhhccCCchHHHHHHHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcc
Q psy6178 209 ---SGSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNES 285 (912)
Q Consensus 209 ---~~~l~~~a~~~l~~~l~~~~~~~~~~~l~~~l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~ 285 (912)
.++++.+||+|+.+++++.+++.++..+++.+.. ++++. -+.++.+.+|.|+...++++++.+|-.......+-.
T Consensus 241 fl~ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q-~l~lf-g~~s~dq~~d~df~e~vskLitg~gvel~~i~s~ln 318 (980)
T KOG2021|consen 241 FLNIEELRIAACNCILAIVSKKMKPMDKLALLNMLNQ-TLELF-GYHSADQMDDLDFWESVSKLITGFGVELTIIISQLN 318 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH-HHHHH-hhhccccccCchHHHHHHHHHhhcceeeehhHhhhh
Confidence 3678899999999999999998877777765532 22221 122334557889999999999999977654433211
Q ss_pred cCCCcc----h----hhHHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHH
Q psy6178 286 MTKQQP----F----SIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALC 357 (912)
Q Consensus 286 ~~~~~~----~----~~~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 357 (912)
.+.+. + ....+.++++...|...| ++..+++||+.+...+++.. ...+..+..+.+++.+++
T Consensus 319 -seld~~~kqn~l~~ll~~vpyllq~l~~e~dd-------it~~ifpFlsdyl~~LKkl~--~ls~~qk~~l~~illai~ 388 (980)
T KOG2021|consen 319 -SELDTLYKQNVLSILLEIVPYLLQFLNNEFDD-------ITAKIFPFLSDYLAFLKKLK--ALSSPQKVPLHKILLAIF 388 (980)
T ss_pred -hccCHHHHHHHHHHHHHHHHHHHHHhcccchh-------hHHHHHHHHHHHHHHHhhcc--cccchhhccHHHHHHHHH
Confidence 01100 1 123456677777776666 89999999999988877642 123334455678888999
Q ss_pred hhcCCCCCCCC-----CccccchHHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhc-----CCCCccchhHHHHHHHHh
Q psy6178 358 KHCQLEPDLEG-----LLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHE-----NNVMWEQTEAALYIMQSV 427 (912)
Q Consensus 358 ~k~~~p~d~~~-----~~ee~~~f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~-----~~~~w~~~Ea~L~~l~~i 427 (912)
+|+.|++...| ++||++.|.++|+++. .+.+....+.++.++..+-+.+.+ +..+|+.+|+|+|.++.+
T Consensus 389 kqicydemy~nddn~tg~EeEa~f~e~RkkLk-~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~l 467 (980)
T KOG2021|consen 389 KQICYDEMYFNDDNVTGDEEEAFFEEVRKKLK-NFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNL 467 (980)
T ss_pred HHHhccHHhhcccCCCCchHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 99999775433 2355678999999998 556666777776555555544432 567899999999999999
Q ss_pred hcccCCCC-----cC-----cHHHHHHHHh--cCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHH--HhcCCC
Q psy6178 428 AKNVLPEE-----ND-----VVPKVVEAIL--HLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLL--HCLQQP 493 (912)
Q Consensus 428 ae~~~~~~-----~~-----~l~~l~~~l~--~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~--~~l~~~ 493 (912)
||+.+.+. .+ .+..++.++. +.+..+|+.|..-.+++|.||..+|..+|+++|.++++++ +|+++.
T Consensus 468 gE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ 547 (980)
T KOG2021|consen 468 GECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNK 547 (980)
T ss_pred hhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhcccc
Confidence 99987541 12 2223444432 3445679999999999999999999999999999999999 478875
Q ss_pred C--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhc-----------CCChHHHHHHHHHHHHHHh--cCCHHHHH
Q psy6178 494 G--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTL-----------SISNDAAIGLLKGVAIIVS--DMPQDQIS 558 (912)
Q Consensus 494 ~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~-----------~~~~~~~~~l~eai~~vi~--~~p~~~~~ 558 (912)
+ |+.+|+|.|.++.+..++.+.|+++.+++.++.+... ....+++..++|++|.+|. ..|+|...
T Consensus 548 ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qa 627 (980)
T KOG2021|consen 548 NENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQA 627 (980)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHH
Confidence 4 9999999999999999999999999999999876521 1235679999999999995 57788899
Q ss_pred HHHHHHHHHhHHHHHHHHHhcC-CCCCCC---CCChHHHHHHHHHHhhhcCCCcC-CCCCChHHHHHhHhHHHHHHHHhh
Q psy6178 559 EALKQLCLVQVKPLCELIEKQI-KPEKNK---KSDPVIWLDRLAAIFKHTSPRIM-SEPHPCQGVITELWPVLSKTCETY 633 (912)
Q Consensus 559 ~~l~~l~~p~~~~l~~~~~~~~-~~~~~~---~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~ 633 (912)
.+...++.|.+.+..-...... ..++.. ...+.+.+-.+|++.+|+..+.. .....+..++.++..++..++..+
T Consensus 628 ay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f 707 (980)
T KOG2021|consen 628 AYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFF 707 (980)
T ss_pred HHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhc
Confidence 9999999999877543332211 011111 12234567788888888765442 122334567788888888888888
Q ss_pred ccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCCCcchHHhHHHHHHHhcCccchHHHHHHHHHHhHHHH
Q psy6178 634 QQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTY 713 (912)
Q Consensus 634 ~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~~~~~~~l~~l~~~l~~~~~ 713 (912)
+..+.++.+++..++|++-++|..+.||+|.+++.++.+......-.|+.+++++++.|+. .+.+.+.+++.++..++|
T Consensus 708 ~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~-~~~~ilnqmlppll~rIf 786 (980)
T KOG2021|consen 708 NKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKT-DCYQILNQMLPPLLNRIF 786 (980)
T ss_pred cccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999988777888999999999999996 899999999999999999
Q ss_pred HhhcCcCCCCCC-------CchHHHHHHHHHHHHHhCCccccCchhhHHHHHHHHHhc---c--cCCchhHHHHHHHHHH
Q psy6178 714 AILQEEDGLKNH-------PDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILAT---H--LDHREANSTVMKFFYD 781 (912)
Q Consensus 714 ~~l~~~~~~~~~-------pd~~~~~f~l~~~~l~~~p~~~l~~~~l~~i~~~~~~~l---~--~~~~~~~~~~~~fl~~ 781 (912)
..+... +...+ -++..+|++|+..+..+.-..++-++..+.+++..+..+ . ..++-+.++.....+.
T Consensus 787 svi~r~-a~p~dt~aa~ek~~lrksy~~fLqtftn~g~~silat~~n~~~~~~iln~l~~~a~~y~dpmmQksln~lcnk 865 (980)
T KOG2021|consen 787 SVIERI-AKPIDTAAAAEKILLRKSYCTFLQTFTNNGVTSILATDINRAILPVILNDLVTYAPQYIDPMMQKSLNVLCNK 865 (980)
T ss_pred HHhccc-CCCCChhHHHHHHHHHHHHHHHHHHHhcCCcceeeeccchhhhhhHHHHHhhhccccccCHHHHHHHHHHHHH
Confidence 998864 22222 346789999999999888766664433333333222122 2 2344455666666677
Q ss_pred HhhccCCCCcccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccc-------cCCCcchhhHHHHHHHHHHhCh
Q psy6178 782 LIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVF-------SLHTYMMADVADVLYELISVDR 854 (912)
Q Consensus 782 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~-------~~~~~~~~~~a~vL~~l~~~~~ 854 (912)
+...|++.+ |. .+++++ + +...|.. .++..... +-....+.++|..++.+..+.|
T Consensus 866 ~v~lwggkd---g~------~gf~df---v---lk~~~ln---~Cf~~pl~~~Fn~~Dgnt~~~lgEla~llK~i~ek~g 927 (980)
T KOG2021|consen 866 IVCLWGGKD---GD------NGFKDF---V---LKIDGLN---KCFPIPLEIPFNIKDGNTKTMLGELARLLKEIFEKSG 927 (980)
T ss_pred HHHhcCCcC---Cc------cccccc---e---eeccccc---ceeeecccCCcccccchHHHHHHHHHHHHHHHHHHhc
Confidence 777777665 21 112211 0 0111110 11111110 0111246889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHhhhhhhhhHHH-HHHHHHh
Q psy6178 855 QVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQ-ALKELSR 909 (912)
Q Consensus 855 ~~~~~wl~~~l~~~p~~~~~~~~~~t~~~k~~f~~~l~~~~~~~~~~~-~~~~F~~ 909 (912)
+++..+|.+. .+|+. +++++-.++|++++.+. +.|.|++ -++.|..
T Consensus 928 necv~yL~q~--ylPs~------q~pqela~qycqaLq~~-d~k~Fk~~f~~~fis 974 (980)
T KOG2021|consen 928 NECVKYLTQI--YLPSI------QLPQELAIQYCQALQTM-DQKQFKKWFVDNFIS 974 (980)
T ss_pred hHHHHHHHHH--hcccc------cCCHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 9999999998 89987 89999999999999744 6888988 7777754
No 4
>KOG2023|consensus
Probab=100.00 E-value=1.2e-46 Score=396.14 Aligned_cols=714 Identities=15% Similarity=0.171 Sum_probs=512.0
Q ss_pred CccHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCccc
Q psy6178 4 QPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSES 83 (912)
Q Consensus 4 ~~~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~ 83 (912)
+.-++|+.+.++.-.+ ||++.|+.++..|++|+..|+--.+...+|...+..+..+|..|..+|||.++.+|..++++.
T Consensus 9 e~~l~ql~~lLk~s~S-pn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~ 87 (885)
T KOG2023|consen 9 EQGLQQLAQLLKNSQS-PNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEV 87 (885)
T ss_pred HHHHHHHHHHHHhccC-CChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHH
Confidence 3557788888887654 689999999999999999999877777888876665688899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhcc--CcchHHHHHHHHhccc--chHHHHHHHHhhhhhhccc-c
Q psy6178 84 HVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS--AWEKPVVYIIEKLSHK--GSILALLEVLTVLPEEVNV-L 158 (912)
Q Consensus 84 ~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~~--~W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~ee~~~-~ 158 (912)
..++|..++..+.. .+| .||+..+..+.+++-..+ .||+.++.+.+.+.+. +..+..+..|..++|+-.. .
T Consensus 88 ~~yiKs~~l~~lgd---~~~-lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~l 163 (885)
T KOG2023|consen 88 LDYIKSECLHGLGD---ASP-LIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFL 163 (885)
T ss_pred HHHHHHHHHhhccC---chH-HHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHH
Confidence 99999999988865 445 889988888888888765 7999999999999876 6788899999999997554 1
Q ss_pred cCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhcCCcchHHHHHHHHhhchhhhccCCchHHHH
Q psy6178 159 KLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNL 238 (912)
Q Consensus 159 ~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi~~~l~~~a~~~l~~~l~~~~~~~~~~~l~~ 238 (912)
... -..+-++-..|+.++++.+. ++++|..+++|+...| +.+... ...-+.
T Consensus 164 ds~-----~~~rpl~~mipkfl~f~~h~------spkiRs~A~~cvNq~i---------------~~~~qa---l~~~iD 214 (885)
T KOG2023|consen 164 DSD-----VLTRPLNIMIPKFLQFFKHP------SPKIRSHAVGCVNQFI---------------IIQTQA---LYVHID 214 (885)
T ss_pred hhh-----cccCchHHhHHHHHHHHhCC------ChhHHHHHHhhhhhee---------------ecCcHH---HHHHHH
Confidence 110 11224555678888877542 5789999999998654 111000 001111
Q ss_pred HHHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHhhhcCCCCcccccCccc
Q psy6178 239 NVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLV 318 (912)
Q Consensus 239 ~l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~e~v 318 (912)
..++. .|.-+ .++|.+..+++|+-++-+-|..+..+.++. -.++++|+..+..++.+ |
T Consensus 215 ~Fle~------lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl--------~~IveyML~~tqd~dE~-------V 272 (885)
T KOG2023|consen 215 KFLEI------LFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHL--------DNIVEYMLQRTQDVDEN-------V 272 (885)
T ss_pred HHHHH------HHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccch--------HHHHHHHHHHccCcchh-------H
Confidence 11111 12222 567788999999999999999998888765 35799999988766655 9
Q ss_pred hhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCC-------CC-----------------------
Q psy6178 319 ASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDL-------EG----------------------- 368 (912)
Q Consensus 319 s~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~-------~~----------------------- 368 (912)
+-.++|||..+++.. -....+.|++.+++++++.+|+|.+++ ++
T Consensus 273 ALEACEFwla~aeqp------i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~ 346 (885)
T KOG2023|consen 273 ALEACEFWLALAEQP------ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGN 346 (885)
T ss_pred HHHHHHHHHHHhcCc------CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccC
Confidence 999999999999852 234677899999999999999995421 00
Q ss_pred ---------Cc---cccchHHH--HHhHhHHHHHhhhHhcCcHHHHHHHHHHhhc--CCCCccchhHHHHHHHHhhcccC
Q psy6178 369 ---------LL---EEDHDFYD--FRLKVSELVKDVVFIVGSSTCFRHMFNSLHE--NNVMWEQTEAALYIMQSVAKNVL 432 (912)
Q Consensus 369 ---------~~---ee~~~f~~--~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~--~~~~w~~~Ea~L~~l~~iae~~~ 432 (912)
++ ||+|.|.+ .|+.-+-.+.-...++|.+ ++..+++.+++ .+..|...||+++++|+|||||.
T Consensus 347 ~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM 425 (885)
T KOG2023|consen 347 GEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM 425 (885)
T ss_pred ccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh
Confidence 00 11223332 4555454555556777865 88888888876 57889999999999999999999
Q ss_pred CCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCc--CcHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHH
Q psy6178 433 PEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHP--HTLETILNFLLHCLQQP--GLASVTANALQSIST 508 (912)
Q Consensus 433 ~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p--~~l~~~l~~l~~~l~~~--~v~~~A~~al~~l~~ 508 (912)
....++++.+++.+.+...+..|.||..+||+++||+.|+...| +++.+++.-+++.+-+. +|+.+||.||..+-+
T Consensus 426 ~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 426 QGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred hhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 88899999999998888777889999999999999999987654 78999999999888764 499999999999999
Q ss_pred HhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCC
Q psy6178 509 ACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQD-QISEALKQLCLVQVKPLCELIEKQIKPEKNKK 587 (912)
Q Consensus 509 ~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~-~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~ 587 (912)
+....|+||+..+++.+....+. .......-++.|||.++.++..+ ....|++.++.|++++|..+-+.+
T Consensus 506 ~A~~eLVp~l~~IL~~l~~af~k-YQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D-------- 576 (885)
T KOG2023|consen 506 EAGEELVPYLEYILDQLVFAFGK-YQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSD-------- 576 (885)
T ss_pred hccchhHHHHHHHHHHHHHHHHH-HhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc--------
Confidence 99999999999999988643321 12223567899999999877654 356789999999999998863322
Q ss_pred CChHHHHHHHHHHhhhcCCCcCCCCCC-hHHHHHhHhHHHHHHHHh---hccchhHHHHHHHHHHHHHHHhchhhHHhHH
Q psy6178 588 SDPVIWLDRLAAIFKHTSPRIMSEPHP-CQGVITELWPVLSKTCET---YQQDARVMEHSSRCLRYAIRCVGKDFAHLLE 663 (912)
Q Consensus 588 ~~~~~~l~~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~---~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~ 663 (912)
.++...++|++.+..+++.+.. | +.+++++++.++...++. -.+++.
T Consensus 577 KdLfPLLEClSsia~AL~~gF~----P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~------------------------- 627 (885)
T KOG2023|consen 577 KDLFPLLECLSSIASALGVGFL----PYAQPVYQRCFRILQKTLQLLAKVQQDPT------------------------- 627 (885)
T ss_pred chHHHHHHHHHHHHHHHhcccc----ccCHHHHHHHHHHHHHHHHHHHhccCCcc-------------------------
Confidence 2456678999999998876421 2 223444444444432221 001110
Q ss_pred HHHHHHHHHHhcCCCcchHHhHHHHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhC
Q psy6178 664 PLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRA 743 (912)
Q Consensus 664 ~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~ 743 (912)
...+.+.-.-+-|++.+-++...|+ .+.+.+.+ .....++-+. ..+.-||++++.|.|+..+.+.|
T Consensus 628 ------~~~pdkdfiI~sLDL~SGLaegLg~-~ie~Lva~------snl~~lll~C-~~D~~peVRQS~FALLGDltk~c 693 (885)
T KOG2023|consen 628 ------VEAPDKDFIIVSLDLLSGLAEGLGS-HIEPLVAQ------SNLLDLLLQC-LQDEVPEVRQSAFALLGDLTKAC 693 (885)
T ss_pred ------ccCCCcceEEEeHHHHhHHHHHhhh-chHHHhhh------ccHHHHHHHH-hccCChHHHHHHHHHHHHHHHHH
Confidence 1112233344567888888888887 44443321 1123333322 33567999999999999999999
Q ss_pred CccccCchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhhccCCCCcccCccccCCCCchHHHHHHHHHHHHHhhHHHH
Q psy6178 744 PIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALV 823 (912)
Q Consensus 744 p~~~l~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv 823 (912)
+..+.+. +..++......+...+..++..|+--+..+....+... ++.+ ..++
T Consensus 694 ~~~v~p~--~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~-----------------~~~v--------~~vl 746 (885)
T KOG2023|consen 694 FEHVIPN--LADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKM-----------------KQYV--------SPVL 746 (885)
T ss_pred HHhccch--HHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhh-----------------hhHH--------HHHH
Confidence 8887653 33333332234444555566666666666554443221 1122 3334
Q ss_pred HHHHHHccc-cCCCcchhhHHHHHHHHHHhChHHHHH
Q psy6178 824 SNLLQACVF-SLHTYMMADVADVLYELISVDRQVSNQ 859 (912)
Q Consensus 824 ~~ll~~~~~-~~~~~~~~~~a~vL~~l~~~~~~~~~~ 859 (912)
..++.-+-. ..|++.+++.|-.+..|...+|+++..
T Consensus 747 ~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp 783 (885)
T KOG2023|consen 747 EDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAP 783 (885)
T ss_pred HHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcch
Confidence 444444433 467788999999999999999876543
No 5
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.8e-43 Score=367.63 Aligned_cols=857 Identities=14% Similarity=0.191 Sum_probs=588.7
Q ss_pred CccHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCccc
Q psy6178 4 QPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSES 83 (912)
Q Consensus 4 ~~~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~ 83 (912)
..+++-+.+.+..+|.+ +...++||++.|.+||..|+||+-+.++|+.+.. ++.+|.|.++|.+-|.++|.-+|.+.
T Consensus 10 dLdiallDkVVttfyqg-~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~--pqskyiALs~LdklIttkWkllp~~~ 86 (1053)
T COG5101 10 DLDIALLDKVVTTFYQG-DGRKQEQAQRILTKFQELPDAWTKADYILNNSKL--PQSKYIALSLLDKLITTKWKLLPEGM 86 (1053)
T ss_pred ccCHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhCchHHHHHHHHHhcccC--cchhhhHHHHHHHHHHhhhhhCCcHH
Confidence 46789999999999986 7778999999999999999999999999999887 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc-----CCChhHHHHHHHHHHHHHhh-cc-CcchHHHHHHHHhccc-chHHHHHHHHhhhhhhc
Q psy6178 84 HVSLRDSLIEHLCRTND-----TSGKNIITQLALALADLALQ-MS-AWEKPVVYIIEKLSHK-GSILALLEVLTVLPEEV 155 (912)
Q Consensus 84 ~~~lk~~Ll~~l~~~~~-----~~~~~v~~kl~~~la~l~~~-~~-~W~~~~~~l~~~~~~~-~~~~~~L~iL~~l~ee~ 155 (912)
+..||+.+.+.+..-++ ...|.+.+|+-.+|..+..+ +| .||++++++++..+.+ ..++.-+.+|+.|.||+
T Consensus 87 r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivLklLsEEv 166 (1053)
T COG5101 87 RQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLKLLSEEV 166 (1053)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHHHHhHHHH
Confidence 99999999999766442 12368999999999999986 67 8999999999987766 66788899999999999
Q ss_pred cc---ccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHH---HHHHHhhc--------------------C
Q psy6178 156 NV---LKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKV---LKCFTSWS--------------------S 209 (912)
Q Consensus 156 ~~---~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~---l~~l~sWi--------------------~ 209 (912)
.+ ..++.-+...+|..|...+++++.++.++++.+. ++++..+. +-|+..|| .
T Consensus 167 FdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~-~~SLi~ATLesllrfl~wiPl~yIfeTnIieLv~~~f~s~ 245 (1053)
T COG5101 167 FDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSR-DESLIEATLESLLRFLEWIPLDYIFETNIIELVLEHFNSM 245 (1053)
T ss_pred HhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHhccC
Confidence 87 2334455667888899999999999999999864 45565554 45666898 4
Q ss_pred CcchHHHHHHHHhhchhhhccCCchH---HHHHHHHHHh--------chHHHHHHHh---cCCChHHHhhHHHHHHHHHH
Q psy6178 210 GSLHDAATDCVSALLPILEYNNNFDA---VNLNVFTCIL--------SLEEQFHMAV---AHEDLEKCMNYCKLFTELAE 275 (912)
Q Consensus 210 ~~l~~~a~~~l~~~l~~~~~~~~~~~---l~~~l~~~v~--------~l~~~~~~~~---~~~d~~~~~~~~~l~~~l~~ 275 (912)
|..+.++.+|+.++..-.+.+.+..+ .....++.+. .....+...- ...|..+...++..++++-+
T Consensus 246 pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~ 325 (1053)
T COG5101 246 PDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYE 325 (1053)
T ss_pred CchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHH
Confidence 66778899999999887655433211 1111111111 1222333322 22345688999999999999
Q ss_pred HHHHHHHhcccCCCcchhhHHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhccc---------C---------
Q psy6178 276 SLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVK---------N--------- 337 (912)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~---------~--------- 337 (912)
.+..++....+. ...+.-...++++....+.+ +...++++|..+.-.+... +
T Consensus 326 ~~~~lLE~~e~~---e~llnah~YLiqiSrInere-------iFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s 395 (1053)
T COG5101 326 VYISLLEAREMA---ENLLNAHGYLIQISRINERE-------IFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGS 395 (1053)
T ss_pred HHHHHhcChhHH---HHHHHHHHHhhhhhhccHHH-------HHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccc
Confidence 999888653210 01122356778888877888 9999999999886544321 0
Q ss_pred ------ch------hhhhcchHHHHHHHHHHHhhcCCCCCC---CCC-c-------cccchHHHHHhHhHHHHHhhhHhc
Q psy6178 338 ------DD------SLTVLFKPHVERLIGALCKHCQLEPDL---EGL-L-------EEDHDFYDFRLKVSELVKDVVFIV 394 (912)
Q Consensus 338 ------~~------~~~~~~~~~~~~ll~~l~~k~~~p~d~---~~~-~-------ee~~~f~~~R~~~~d~l~~~~~~l 394 (912)
.+ -.+..|..++.+|.-+++.+|.-|++. +.| . .|.|...-| +.+.+++....+..
T Consensus 396 ~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lY-ksmRevLvyLthL~ 474 (1053)
T COG5101 396 QAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELY-KSMREVLVYLTHLI 474 (1053)
T ss_pred hhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHH-HHHhhHHHHHhhhh
Confidence 00 123346778888888999999888764 111 1 122222223 34555666666543
Q ss_pred CcH---HHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-CcCcHHHHHHHHhcCCC----CchHHH-HHHHHHHH
Q psy6178 395 GSS---TCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-ENDVVPKVVEAILHLPP----STHIAV-RYTSLLLL 465 (912)
Q Consensus 395 ~~~---~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~~~~----~~~~~v-~~t~~~~l 465 (912)
-.+ .++..+.-.+.....+|+.+..-.+++|+++..+++. +..++-.++.-++.+.. ..+.+| ..-.+.++
T Consensus 475 v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvv 554 (1053)
T COG5101 475 VDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVV 554 (1053)
T ss_pred hhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeee
Confidence 322 1344455555556789999999999999999998765 34566666665443321 234444 44557999
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhhhhh--------hcHHHHHHHHHHhhhcCCCh
Q psy6178 466 GELCEWIDKHPHTLETILNFLLHCLQQP--GLASVTANALQSISTACCTHMV--------GHFNGLLQIIQCLDTLSISN 535 (912)
Q Consensus 466 g~y~~~l~~~p~~l~~~l~~l~~~l~~~--~v~~~A~~al~~l~~~~~~~L~--------~~~~~ll~~~~~l~~~~~~~ 535 (912)
|+|.+|+..|..+|.+++..++..++.. .++..||..|.++++.|+.+.+ |++..++.-+... ...+.+
T Consensus 555 GQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~kt-T~dL~p 633 (1053)
T COG5101 555 GQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKT-TGDLEP 633 (1053)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhh-cccCCh
Confidence 9999999999999999999999999863 4999999999999999998765 3333343333322 234666
Q ss_pred HHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHhHHHHHHHHHhcCCCCCCC-CCChHHHHHHHH-----HHhhh--cCC
Q psy6178 536 DAAIGLLKGVAIIVSDMPQD-QISEALKQLCLVQVKPLCELIEKQIKPEKNK-KSDPVIWLDRLA-----AIFKH--TSP 606 (912)
Q Consensus 536 ~~~~~l~eai~~vi~~~p~~-~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~-~~~~~~~l~~l~-----~~~~~--l~~ 606 (912)
......++|.|.+++..|.. +....+..+++-....|..+..++. ++.. ..+. .....++ .+.++ ++.
T Consensus 634 qQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~--~n~~~L~d~-~tvki~an~~ktnVa~ctslg~ 710 (1053)
T COG5101 634 QQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQAD--ENINRLSDT-MTVKIDANKMKTNVAKCTSLGY 710 (1053)
T ss_pred HHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhh--hhhhhhcch-hHHHHHHHHHHHHHHHHhhccc
Confidence 67789999999999999973 4555666666666666666655431 1110 0110 0111112 22221 111
Q ss_pred CcCCCCCChHHHHHhHhHHHHH---HHHh-------------hccchhHHHHHHHHHHHHHHH---hchhhHHhHHHHHH
Q psy6178 607 RIMSEPHPCQGVITELWPVLSK---TCET-------------YQQDARVMEHSSRCLRYAIRC---VGKDFAHLLEPLVK 667 (912)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~l~~---~l~~-------------~~~~~~v~e~~~~~~~~~~~~---l~~~~~p~l~~l~~ 667 (912)
+. .+..+..+...+.+-... +... +.+--.+...+..++...+.. +.---..+++++++
T Consensus 711 ~f--yPq~~~~y~~ml~ly~avs~~Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIska~dl~~V~n~lv~~l~e 788 (1053)
T COG5101 711 RF--YPQTCSSYCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKARDLKFVQNDLVNMLCE 788 (1053)
T ss_pred cc--chHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 10 112222222222221110 0000 000011111222222222211 11112457788889
Q ss_pred HHHHHHhcC----CCcchHHhHHHHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhC
Q psy6178 668 QIVVLYSKH----PHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRA 743 (912)
Q Consensus 668 ~l~~~~~~~----~~~~~L~~~~~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~ 743 (912)
.++..|.++ +.+..|.+.+.++...|+ -+.....-.+......++.++.. +++++|+...+||.|+..+..++
T Consensus 789 aVl~DY~nNvPdardaevLnl~ttiV~~v~~-~i~~~~~l~l~svf~ctl~mi~k--df~EypEhr~~f~~Ll~~inl~s 865 (1053)
T COG5101 789 AVLFDYKNNVPDARDAEVLNLGTTIVRNVES-VIYLQRELFLISVFICTLIMIVK--DFDEYPEHRKNFLLLLENINLFS 865 (1053)
T ss_pred HHHHHHhcCCCccccHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHhhhHHHHHh--hhhhChHHHHHHHHHHHHHHHHh
Confidence 888888765 456789999999988876 11111222223333445555554 67899999999999999999999
Q ss_pred Ccccc--CchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhhccCCCCcccCccccCCCCchHHHHHHHHHHHHHhhHH
Q psy6178 744 PIAFL--TSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQA 821 (912)
Q Consensus 744 p~~~l--~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 821 (912)
...|+ +.|.+..+.+..++++...+|+.....++.+..++..+.... ...++++..++--.
T Consensus 866 F~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~mg-----------------~~~~n~F~~~yy~s 928 (1053)
T COG5101 866 FSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEMG-----------------VPFINQFYAQYYMS 928 (1053)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHhC-----------------CchHHHHHHHHHHH
Confidence 87775 556788888888888999999999999999999997664322 12567777777788
Q ss_pred HHHHHHHHccccCCCcchhhHHHHHHHHHHhC--------------h--HHHHHHHHHHHh-cCCCCCCCCCCCCCHHHH
Q psy6178 822 LVSNLLQACVFSLHTYMMADVADVLYELISVD--------------R--QVSNQWLQDTIS-QLPKNTPAGMNAATPEQL 884 (912)
Q Consensus 822 lv~~ll~~~~~~~~~~~~~~~a~vL~~l~~~~--------------~--~~~~~wl~~~l~-~~p~~~~~~~~~~t~~~k 884 (912)
++..++..+...-+.+..+.-+-+|..+++.. | ..+.+++...+. +|| ++|+++.
T Consensus 929 ~l~~il~vltDsDhKsgF~~Q~Llla~li~lv~dnkisVPlyd~~~~n~~~lseyi~~l~~~sfp--------~it~e~v 1000 (1053)
T COG5101 929 TLENILGVLTDSDHKSGFDQQCLLLAFLIRLVKDNKISVPLYDGINPNITILSEYIVGLFVKSFP--------NITQESV 1000 (1053)
T ss_pred HHHHHHeeeeccchhccchHHHHHHHHHHHHHhccccccccccCCCCchhhHHHHHHHHHHhhcC--------cccHHHH
Confidence 88888888887778888888888887777642 2 236778777655 788 6899999
Q ss_pred HHHHHHHhhhhhh-hhHHHHHHHHHh
Q psy6178 885 IEFHSQVTRSESA-YDVGQALKELSR 909 (912)
Q Consensus 885 ~~f~~~l~~~~~~-~~~~~~~~~F~~ 909 (912)
..|...++...+. .-|+++++||-.
T Consensus 1001 ~~f~~~l~~~~~d~~ifk~~~~df~v 1026 (1053)
T COG5101 1001 KIFSVGLFELCGDDEIFKEHVEDFRV 1026 (1053)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence 9999999988765 679999999964
No 6
>KOG2171|consensus
Probab=100.00 E-value=1.3e-43 Score=400.19 Aligned_cols=595 Identities=16% Similarity=0.195 Sum_probs=461.1
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHHH
Q psy6178 7 LDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVS 86 (912)
Q Consensus 7 ~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~~ 86 (912)
.+.+.+++..|.+ ||+++|++|++.|+..-+++..-....+++....+ +++|++||..+|+.+.++|..++++.+..
T Consensus 3 ~~~l~qLl~~l~s-pDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~--p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLS-PDNEVRRQAEEALETLAKTEPLLPALAHILATSAD--PQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred hhHHHHHHHHhcC-CCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 5678888889876 58899999999999666655577777788888777 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhcc--CcchHHHHHHHHhccc--chHHHHHHHHhhhhhhcccccCCh
Q psy6178 87 LRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS--AWEKPVVYIIEKLSHK--GSILALLEVLTVLPEEVNVLKLGK 162 (912)
Q Consensus 87 lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~~--~W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~ee~~~~~~~~ 162 (912)
||++||..+.+. .. +.||+|+|.++|.++.... .||+.++.++++.++. ...+..+.+|..+|+-+++
T Consensus 80 iks~lL~~~~~E--~~-~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~----- 151 (1075)
T KOG2171|consen 80 IKSSLLEIIQSE--TE-PSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN----- 151 (1075)
T ss_pred HHHHHHHHHHhc--cc-hHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-----
Confidence 999999998873 23 4899999999999998653 5999999999999887 6789999999999998887
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhcCCcchHHHHHHHHhhchhhhccCCchHHHHHHHH
Q psy6178 163 NRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFT 242 (912)
Q Consensus 163 ~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi~~~l~~~a~~~l~~~l~~~~~~~~~~~l~~~l~~ 242 (912)
.+..+...+..+|.+++++++.+ ++..+++++.+. ....++...-...+..++|
T Consensus 152 --------~~~~~~~~l~~lf~q~~~d~s~~--vr~~a~rA~~a~----------------~~~~~~~~~~~~~~~~llP 205 (1075)
T KOG2171|consen 152 --------TLQPHLDDLLRLFSQTMTDPSSP--VRVAAVRALGAF----------------AEYLENNKSEVDKFRDLLP 205 (1075)
T ss_pred --------ccchhHHHHHHHHHHhccCCcch--HHHHHHHHHHHH----------------HHHhccchHHHHHHHHHhH
Confidence 34557788999999999987532 777777777632 2222211122466788889
Q ss_pred HHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHhhhcCCCCcccccCccchhhh
Q psy6178 243 CILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASIT 322 (912)
Q Consensus 243 ~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~e~vs~~~ 322 (912)
.+++..+ ..+..+|.+....+.+.+.++.++.++++.+.. -.++++.+.+.++.+.+ +.++..+
T Consensus 206 ~~l~vl~---~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l--------~~ii~~~l~Ia~n~~l~-----~~~R~~A 269 (1075)
T KOG2171|consen 206 SLLNVLQ---EVIQDGDDDAAKSALEALIELLESEPKLLRPHL--------SQIIQFSLEIAKNKELE-----NSIRHLA 269 (1075)
T ss_pred HHHHHhH---hhhhccchHHHHHHHHHHHHHHhhchHHHHHHH--------HHHHHHHHHHhhccccc-----HHHHHHH
Confidence 8776444 445678888889999999999999999887754 35799999999999888 6699999
Q ss_pred hhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCC-CCCCCCCc---cccchHHHHHhHhHHHHHhhhHhcCcHH
Q psy6178 323 FRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQL-EPDLEGLL---EEDHDFYDFRLKVSELVKDVVFIVGSST 398 (912)
Q Consensus 323 l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~-p~d~~~~~---ee~~~f~~~R~~~~d~l~~~~~~l~~~~ 398 (912)
++|...+.++-. .+.....++..+|+.+++..|.= ..|++|.+ .|+|++..--......+..+...+|++.
T Consensus 270 Le~ivs~~e~Ap-----~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~ 344 (1075)
T KOG2171|consen 270 LEFLVSLSEYAP-----AMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ 344 (1075)
T ss_pred HHHHHHHHHhhH-----HHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh
Confidence 999999988722 23344455666777777666542 22334432 2234433222223335666677888877
Q ss_pred HHHHHHHHhhc--CCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhc--
Q psy6178 399 CFRHMFNSLHE--NNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK-- 474 (912)
Q Consensus 399 ~l~~l~~~l~~--~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~-- 474 (912)
++..+++.+.. .+.+|..+.|+|.++++++||+.......+++++++++...+|+||+||+++|.+||+++.-|..
T Consensus 345 v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 345 VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 77777777765 68899999999999999999998777788999999998888899999999999999999987754
Q ss_pred ---CcCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh-hhhhcHHHHHHH-HHHhhhcCCChHHHHHHHHHHHHHH
Q psy6178 475 ---HPHTLETILNFLLHCLQQPGLASVTANALQSISTACCT-HMVGHFNGLLQI-IQCLDTLSISNDAAIGLLKGVAIIV 549 (912)
Q Consensus 475 ---~p~~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~~~~-~L~~~~~~ll~~-~~~l~~~~~~~~~~~~l~eai~~vi 549 (912)
|++.+++.+-.....-.+++|+.+|+.|+-+|.++|.+ .+.||+|.+|+. +..+.+. -+...++.++.+||+|+
T Consensus 425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~-~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS-SKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHH
Confidence 35677777777777777788999999999999999975 688999999994 4445443 35668999999999998
Q ss_pred hcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHH
Q psy6178 550 SDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKT 629 (912)
Q Consensus 550 ~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 629 (912)
.+.. +...+|+..+ +.-|..++.... +++.+......+++++.+.+.++. ..+.+..++++.++..+
T Consensus 504 ~AA~-~~F~pY~d~~----Mp~L~~~L~n~~--~~d~r~LrgktmEcisli~~AVGk------e~F~~~a~eliqll~~~ 570 (1075)
T KOG2171|consen 504 DAAQ-EKFIPYFDRL----MPLLKNFLQNAD--DKDLRELRGKTMECLSLIARAVGK------EKFLPLAEELIQLLLEL 570 (1075)
T ss_pred HHHh-hhhHhHHHHH----HHHHHHHHhCCC--chhhHHHHhhHHHHHHHHHHHhhh------hhhhHhHHHHHHHHHhh
Confidence 7753 4455565554 444556666542 233233345579999999999885 46788889888887776
Q ss_pred HHh-hccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHH
Q psy6178 630 CET-YQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLY 673 (912)
Q Consensus 630 l~~-~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~ 673 (912)
... ...|...++.....|.++.+.+|.+|.||+|.++.-+...-
T Consensus 571 ~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta 615 (1075)
T KOG2171|consen 571 QGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTA 615 (1075)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhh
Confidence 532 23466788999999999999999999999999988776543
No 7
>KOG1241|consensus
Probab=100.00 E-value=8.3e-31 Score=282.09 Aligned_cols=614 Identities=15% Similarity=0.210 Sum_probs=422.8
Q ss_pred CCChhhHHHHHHHHHHhhcChhH--HHHHHHHhccCCCcchHHHHHHHHHHHHHhh-----------cccCCCCcccHHH
Q psy6178 20 NPNKTEKEKASQWLHQLQKSIYA--WKIADEMLLHQNELGLEAVYFSAQTMRQKVQ-----------NAFFELPSESHVS 86 (912)
Q Consensus 20 ~~~~~~~~~A~~~L~~~q~s~~a--w~~~~~lL~~~~~~~~~vr~faa~~L~~ki~-----------~~w~~l~~~~~~~ 86 (912)
+||+..|+.|+++|+++++.+-+ -...-+.|.+.++ ++..|..|+.+|||.+. .+|.+++.|.+++
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~-~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~req 90 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNS-SDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQ 90 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCC-cHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHH
Confidence 46899999999999999997654 2333344444332 58999999999999874 4799999999999
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHh-hcc--CcchHHHHHHHHhccc---chHHHHHHHHhhhhhhcccccC
Q psy6178 87 LRDSLIEHLCRTNDTSGKNIITQLALALADLAL-QMS--AWEKPVVYIIEKLSHK---GSILALLEVLTVLPEEVNVLKL 160 (912)
Q Consensus 87 lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~-~~~--~W~~~~~~l~~~~~~~---~~~~~~L~iL~~l~ee~~~~~~ 160 (912)
+|+.++..|... .| ...+--++++|.++. ..| .||+++..+......+ ...+..|+.+..++|++..
T Consensus 91 VK~~il~tL~~~---ep-~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~p--- 163 (859)
T KOG1241|consen 91 VKNNILRTLGSP---EP-RRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDP--- 163 (859)
T ss_pred HHHHHHHHcCCC---CC-CccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCH---
Confidence 999999999752 23 344445556666664 334 7999999999998765 2457899999999999875
Q ss_pred ChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhcCCcchHHHHHHHHhhchhhhccCCchHHHHHH
Q psy6178 161 GKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNV 240 (912)
Q Consensus 161 ~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi~~~l~~~a~~~l~~~l~~~~~~~~~~~l~~~l 240 (912)
+.+..+...++.-+.+.+...+++..+|.++++|+.- ++++..+.+.+-. + ...+...
T Consensus 164 ---------evl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~n---------sLef~~~nF~~E~---e-rn~iMqv 221 (859)
T KOG1241|consen 164 ---------EVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYN---------SLEFTKANFNNEM---E-RNYIMQV 221 (859)
T ss_pred ---------HHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHH---------HHHHHHHhhccHh---h-hceeeee
Confidence 2566778888888888888776677889988888751 2222222221110 0 1122111
Q ss_pred HHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHhhhcCCCCcccccCccchh
Q psy6178 241 FTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVAS 320 (912)
Q Consensus 241 ~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~e~vs~ 320 (912)
+ -++-...|.+........++.+..-|+.++..++ ..+++..-+..+..++.+ |+.
T Consensus 222 ---v-------cEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM-------~~alfaitl~amks~~de-------Val 277 (859)
T KOG1241|consen 222 ---V-------CEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYM-------EQALFAITLAAMKSDNDE-------VAL 277 (859)
T ss_pred ---e-------eecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHcCCcHH-------HHH
Confidence 1 1123456778888888888888888998888766 123455555555544444 999
Q ss_pred hhhhhHHHHHHHhcccC--chhhhhcc---------hHHHHHHHHHHHhhcCC-CCCCCCCccccchHHHHHhHhHHHHH
Q psy6178 321 ITFRLWYRLSEILYVKN--DDSLTVLF---------KPHVERLIGALCKHCQL-EPDLEGLLEEDHDFYDFRLKVSELVK 388 (912)
Q Consensus 321 ~~l~Fw~~l~~~~~~~~--~~~~~~~~---------~~~~~~ll~~l~~k~~~-p~d~~~~~ee~~~f~~~R~~~~d~l~ 388 (912)
.++|||.++.++-.+.. ..+..+.. +.-+.-++++++..+.- .+| +|+|++.-. +..+-+++
T Consensus 278 QaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~-----~d~DdWnp~-kAAg~CL~ 351 (859)
T KOG1241|consen 278 QAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDED-----DDDDDWNPA-KAAGVCLM 351 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCC-----cccccCcHH-HHHHHHHH
Confidence 99999999887654421 01111111 12234566777777654 222 122334322 33454555
Q ss_pred hhhHhcCcHHHHHHHHHHhhc--CCCCccchhHHHHHHHHhhcccCCC-CcCcHHHHHHHHhcCCCCchHHHHHHHHHHH
Q psy6178 389 DVVFIVGSSTCFRHMFNSLHE--NNVMWEQTEAALYIMQSVAKNVLPE-ENDVVPKVVEAILHLPPSTHIAVRYTSLLLL 465 (912)
Q Consensus 389 ~~~~~l~~~~~l~~l~~~l~~--~~~~w~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~l 465 (912)
-.....|++ .++++.+-+++ .+++|+.+||+.++++++-++-.+. ....+++.++.+..+-.++.-.++.|+-|++
T Consensus 352 l~A~~~~D~-Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtl 430 (859)
T KOG1241|consen 352 LFAQCVGDD-IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTL 430 (859)
T ss_pred HHHHHhccc-chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHH
Confidence 555666664 66666666664 5789999999999999999985443 2345556666655555566778899999999
Q ss_pred HHHHHHHhc---CcCcHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHhhhh---------hhhcHHHHHHHHHHhhhcC
Q psy6178 466 GELCEWIDK---HPHTLETILNFLLHCLQQ-PGLASVTANALQSISTACCTH---------MVGHFNGLLQIIQCLDTLS 532 (912)
Q Consensus 466 g~y~~~l~~---~p~~l~~~l~~l~~~l~~-~~v~~~A~~al~~l~~~~~~~---------L~~~~~~ll~~~~~l~~~~ 532 (912)
|+.++++.. |-.++.+.+..++.||++ |++...+|+||..|++.|... ..|+.+.+++.+.....+.
T Consensus 431 grI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~ 510 (859)
T KOG1241|consen 431 GRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRA 510 (859)
T ss_pred HHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhcccc
Confidence 999998763 347899999999999987 889999999999999887642 3357777777776554432
Q ss_pred C--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCC---hHH-HHHHHHHHhhhcCC
Q psy6178 533 I--SNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSD---PVI-WLDRLAAIFKHTSP 606 (912)
Q Consensus 533 ~--~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~---~~~-~l~~l~~~~~~l~~ 606 (912)
. ....|...++|++-++...| +...+.+.++...++.+|.+.++.+..... .+.+ +.. ...+|+.+.|.+++
T Consensus 511 dgnqsNLR~AAYeALmElIk~st-~~vy~~v~~~~l~il~kl~q~i~~~~l~~~-dr~q~~eLQs~Lc~~Lq~i~rk~~~ 588 (859)
T KOG1241|consen 511 DGNQSNLRSAAYEALMELIKNST-DDVYPMVQKLTLVILEKLDQTISSQILSLA-DRAQLNELQSLLCNTLQSIIRKVGS 588 (859)
T ss_pred ccchhhHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhccHh-hHHHHHHHHHHHHHHHHHHHHHccc
Confidence 2 23358899999999999876 567778889999999999999984321111 0111 111 23567777777765
Q ss_pred CcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCC----CcchH
Q psy6178 607 RIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHP----HSSFL 682 (912)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~----~~~~L 682 (912)
...++.+.+|..+.++++. ..+.-+.|.++..+...+..+|+.|..|+|.+.+++..+.++.. .....
T Consensus 589 -------~~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aV 660 (859)
T KOG1241|consen 589 -------DIREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAV 660 (859)
T ss_pred -------cchhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 2456779999999999987 66777889999999999999999999999999999987764322 12334
Q ss_pred HhHHHHHHHhcCccchHHHHHHH
Q psy6178 683 YLGSILVDEYATSHCVSGLLDMV 705 (912)
Q Consensus 683 ~~~~~lv~~~g~~~~~~~l~~l~ 705 (912)
.+++.+....++ .+.++...++
T Consensus 661 glVgdl~raL~~-~i~py~d~~m 682 (859)
T KOG1241|consen 661 GLVGDLARALED-DILPYCDELM 682 (859)
T ss_pred HHHHHHHHHHHh-hhhhHHHHHH
Confidence 445555544444 3444444333
No 8
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.97 E-value=5.4e-25 Score=229.18 Aligned_cols=596 Identities=13% Similarity=0.128 Sum_probs=380.0
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhH---HHHHHHHhccCCCcchHHHHHHHHHHHHHhh-----------
Q psy6178 8 DTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYA---WKIADEMLLHQNELGLEAVYFSAQTMRQKVQ----------- 73 (912)
Q Consensus 8 ~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~a---w~~~~~lL~~~~~~~~~vr~faa~~L~~ki~----------- 73 (912)
.++.+..+.-.-+||+..|..|++.|.++++.+-. --++..+.+..+. ++.|..|+.+|||.+.
T Consensus 4 ~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~--~~~Rm~agl~LKN~l~a~d~~~~~~~~ 81 (858)
T COG5215 4 SEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSN--DQLRMVAGLILKNSLHANDPELQKGCS 81 (858)
T ss_pred HHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCc--HHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 34444444422246899999999999999997654 2234455555444 9999999999999885
Q ss_pred cccCCCCcccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHh---hccCcchHHHHHHHHhccc---chHHHHHHH
Q psy6178 74 NAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLAL---QMSAWEKPVVYIIEKLSHK---GSILALLEV 147 (912)
Q Consensus 74 ~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~---~~~~W~~~~~~l~~~~~~~---~~~~~~L~i 147 (912)
.+|-.++.|.++++|...++.|+. ..| -.-+--++.+|.++- ....||+++..+....+.+ ...--.|.+
T Consensus 82 qrW~~~~~E~k~qvK~~al~aL~s---~ep-r~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~ 157 (858)
T COG5215 82 QRWLGMRHESKEQVKGMALRALKS---PEP-RFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGI 157 (858)
T ss_pred HhhccCCHHHHHHHHHHHHHHhcC---Ccc-HHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHH
Confidence 369999999999999999999976 334 344555555666654 3337999999999998765 334455677
Q ss_pred HhhhhhhcccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhcCCcchHHHHHHHHhhchhh
Q psy6178 148 LTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPIL 227 (912)
Q Consensus 148 L~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi~~~l~~~a~~~l~~~l~~~ 227 (912)
+...+|-... +.+.+....++--+...-...+++..++..+|+|+.- .+..+.+.+.
T Consensus 158 ~gy~ces~~P------------e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~d---------sl~fv~~nf~-- 214 (858)
T COG5215 158 CGYHCESEAP------------EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMD---------SLMFVQGNFC-- 214 (858)
T ss_pred HHHHhhccCH------------HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHH---------HHHHHHHhhc--
Confidence 7777775443 1233344444333333333334567889999998851 1112222221
Q ss_pred hccCCchHHHHHHHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHhhhcCC
Q psy6178 228 EYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHH 307 (912)
Q Consensus 228 ~~~~~~~~l~~~l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ll~~~~~~ 307 (912)
.++....+... .-++-+.+|++......-.++.+..-|+.++.... + ..+..+....+.++
T Consensus 215 --~E~erNy~mqv----------vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ym------E-~aL~alt~~~mks~ 275 (858)
T COG5215 215 --YEEERNYFMQV----------VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYM------E-NALAALTGRFMKSQ 275 (858)
T ss_pred --chhhhchhhee----------eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHHhcCc
Confidence 11111222111 11233456777766777777777777777665443 0 12333444445555
Q ss_pred CCcccccCccchhhhhhhHHHHHHHhcccCchh---------hhhcchHHHHHHHHHHHhhcCC-CCCCCCCccccchHH
Q psy6178 308 DYEATNLGGLVASITFRLWYRLSEILYVKNDDS---------LTVLFKPHVERLIGALCKHCQL-EPDLEGLLEEDHDFY 377 (912)
Q Consensus 308 ~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~---------~~~~~~~~~~~ll~~l~~k~~~-p~d~~~~~ee~~~f~ 377 (912)
+.+ |...+.+||+++.++-.+.+.+- ....-+.-...+++.++..+.- .+|. ++|++.
T Consensus 276 nd~-------va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~-----~~DdWn 343 (858)
T COG5215 276 NDE-------VAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDY-----YGDDWN 343 (858)
T ss_pred chH-------HHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCc-----cccccc
Confidence 555 99999999999887644321110 0000011122233444443322 1221 112222
Q ss_pred HHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhc--CCCCccchhHHHHHHHHhhcccCCC-CcCcHHHHHHHHhcCCCCch
Q psy6178 378 DFRLKVSELVKDVVFIVGSSTCFRHMFNSLHE--NNVMWEQTEAALYIMQSVAKNVLPE-ENDVVPKVVEAILHLPPSTH 454 (912)
Q Consensus 378 ~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~--~~~~w~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~~~~~~~ 454 (912)
-. ...+-+++-.....|+ ..+..+..-+++ .+.+|+.+||+..+++++-++-... -..++++.++.|...-.++.
T Consensus 344 ~s-maA~sCLqlfaq~~gd-~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~ 421 (858)
T COG5215 344 PS-MAASSCLQLFAQLKGD-KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC 421 (858)
T ss_pred hh-hhHHHHHHHHHHHhhh-HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce
Confidence 11 1222233322233333 344444443433 4788999999999999999884322 24567777777766666667
Q ss_pred HHHHHHHHHHHHHHHHHHhc--Cc-CcHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHhhh-------hhhhcHHHHHH
Q psy6178 455 IAVRYTSLLLLGELCEWIDK--HP-HTLETILNFLLHCLQQ-PGLASVTANALQSISTACCT-------HMVGHFNGLLQ 523 (912)
Q Consensus 455 ~~v~~t~~~~lg~y~~~l~~--~p-~~l~~~l~~l~~~l~~-~~v~~~A~~al~~l~~~~~~-------~L~~~~~~ll~ 523 (912)
-.+..|+.|++|+.++++.. +| .++++.....+-|+.| |.+...+++++.+|.+...+ .+.++.+.+++
T Consensus 422 l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~ 501 (858)
T COG5215 422 LWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILN 501 (858)
T ss_pred eehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHH
Confidence 78899999999999998875 35 5788999999888876 78889999999999877543 46677788888
Q ss_pred HHHHhhhcCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCC--CCCC--CCCCh-HHHHHHH
Q psy6178 524 IIQCLDTLSI-SNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIK--PEKN--KKSDP-VIWLDRL 597 (912)
Q Consensus 524 ~~~~l~~~~~-~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~--~~~~--~~~~~-~~~l~~l 597 (912)
.+........ ....|..+++++|.++.-.| +...+.+..+.+-++.++.++++-.++ ..++ ...++ ...+..|
T Consensus 502 ~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~-d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl 580 (858)
T COG5215 502 ALVKGTELALNESNLRVSLFSALGTLILICP-DAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVL 580 (858)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 7765433211 23368899999999998765 556677888888889999888875421 1111 01111 1246677
Q ss_pred HHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHh
Q psy6178 598 AAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYS 674 (912)
Q Consensus 598 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~ 674 (912)
.+++|..++. +.++.+++|.++.++++.- ...-+-+.+...++.+..++|+.|..|++.+++.+.....
T Consensus 581 ~aiir~~~~~-------ie~v~D~lm~Lf~r~les~-~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln 649 (858)
T COG5215 581 EAIIRTRRRD-------IEDVEDQLMELFIRILEST-KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN 649 (858)
T ss_pred HHHHHhcCCC-------cccHHHHHHHHHHHHHhcc-CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence 7888876653 2345578899999998874 3344567789999999999999999999999999988774
No 9
>KOG1991|consensus
Probab=99.97 E-value=5.7e-25 Score=244.73 Aligned_cols=623 Identities=16% Similarity=0.200 Sum_probs=395.8
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCC--------
Q psy6178 7 LDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFE-------- 78 (912)
Q Consensus 7 ~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~-------- 78 (912)
.+.+.+++.+-.++ |++.|+.|++.|++++|.|+-...+.+++..... +..||+-||..|||+|.+.|..
T Consensus 3 ~~~l~~~~~~T~d~-d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~-~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDS-DAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGV-PLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred hHHHHHHHHHhcCC-ChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 67778888876664 6999999999999999999999999999888653 6789999999999999999974
Q ss_pred -CCcccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHh-hcc-CcchHHHHHHHHhccc--chHHHHHHHHhhhhh
Q psy6178 79 -LPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLAL-QMS-AWEKPVVYIIEKLSHK--GSILALLEVLTVLPE 153 (912)
Q Consensus 79 -l~~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~-~~~-~W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~e 153 (912)
.+++++..+|+.++..+.+ . |..+|.++..++-.|+. .+| .||++++.+-..++++ .++..+|-+|..|..
T Consensus 81 ~I~e~dk~~irenIl~~iv~---~-p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k 156 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQ---V-PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFK 156 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHh---C-chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 4678999999999999887 4 45999999999977766 466 7999999999999887 556677777777755
Q ss_pred hcccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCC-CChHHHHHHHHHHHhhc---------CCcchHHHHHHHHhh
Q psy6178 154 EVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCG-DNVSLQTKVLKCFTSWS---------SGSLHDAATDCVSAL 223 (912)
Q Consensus 154 e~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~-~~~~~~~~~l~~l~sWi---------~~~l~~~a~~~l~~~ 223 (912)
-..- -..++|..+...+....|.+++.+.+.+...+ .+..+...++|.+.+-+ .++.|-..++.+..+
T Consensus 157 ~ye~--k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i 234 (1010)
T KOG1991|consen 157 TYEW--KKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSI 234 (1010)
T ss_pred HHhh--ccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHH
Confidence 3331 12456777888899999999999999988753 24567788899888765 344555556666666
Q ss_pred chhhhccCCc--hHHHHHHHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHH-----HHhcccCCCcchhhHH
Q psy6178 224 LPILEYNNNF--DAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDR-----IVNESMTKQQPFSIKA 296 (912)
Q Consensus 224 l~~~~~~~~~--~~l~~~l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~-----l~~~~~~~~~~~~~~~ 296 (912)
+.+.-..+.. .+-.+..++.. + .++ ...+.+.|+|...|...... +..... .. -...+
T Consensus 235 ~~rpvP~E~l~~d~e~R~~~~ww---K--~KK-------Wa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~-~n--~~~~i 299 (1010)
T KOG1991|consen 235 LNRPVPVEVLSLDPEDRSSWPWW---K--CKK-------WALHILNRLFERYGSPSLVVPEYKEFAQMFL-KN--FAQGI 299 (1010)
T ss_pred HcCCCChhcccCChhhcccccch---h--hHH-------HHHHHHHHHHHHhCCccccchhhHHHHHHHH-HH--HHHHH
Confidence 6543221100 00000000000 0 000 01222333333332211100 000000 00 00123
Q ss_pred HHHHHhhh---cCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHH-HHHHhhcCCC-CCCCCCcc
Q psy6178 297 LDLVLICV---GHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLI-GALCKHCQLE-PDLEGLLE 371 (912)
Q Consensus 297 l~~ll~~~---~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll-~~l~~k~~~p-~d~~~~~e 371 (912)
++..+... +. +.. ++..++.|...+.+...+ +...+...+|++.-++ ++++..|.+. +|++.+++
T Consensus 300 le~~lk~l~~~~~-~~y-------ls~rvl~~~l~fl~~~Vs--~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~ 369 (1010)
T KOG1991|consen 300 LEVFLKILEQWRQ-QLY-------LSDRVLYYLLNFLEQCVS--HASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEE 369 (1010)
T ss_pred HHHHHHHHHHHHh-ccc-------CCHHHHHHHHHHHHHhcc--HHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhc
Confidence 34433332 23 333 455556555555544332 3456777888887665 4566666663 33333344
Q ss_pred ccchHHHHHh-----------HhHHHHHhhhHhcCcH---HHHHHHHHHhhc------CCCCccchhHHHHHHHHhhccc
Q psy6178 372 EDHDFYDFRL-----------KVSELVKDVVFIVGSS---TCFRHMFNSLHE------NNVMWEQTEAALYIMQSVAKNV 431 (912)
Q Consensus 372 e~~~f~~~R~-----------~~~d~l~~~~~~l~~~---~~l~~l~~~l~~------~~~~w~~~Ea~L~~l~~iae~~ 431 (912)
|.++|-+... ...+++-.++..-|.+ .++..+.+.+.+ ++.+.+..|.||+.++++++-+
T Consensus 370 DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L 449 (1010)
T KOG1991|consen 370 DPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASIL 449 (1010)
T ss_pred CHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHH
Confidence 4444432222 2334455555555554 234445555552 3567889999999999999877
Q ss_pred CCCCcCcHHHHHHHHhc--CC--CCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcC-CCC--hHHHHHHHHH
Q psy6178 432 LPEENDVVPKVVEAILH--LP--PSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQ-QPG--LASVTANALQ 504 (912)
Q Consensus 432 ~~~~~~~l~~l~~~l~~--~~--~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~-~~~--v~~~A~~al~ 504 (912)
.. .+.+-.++-.+|.+ +| .++.-.+|..+||++++|++-=-++|..+..++....++|. +++ |+..|+-|++
T Consensus 450 ~K-~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq 528 (1010)
T KOG1991|consen 450 LK-KSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQ 528 (1010)
T ss_pred cc-CCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHH
Confidence 54 23322222222222 12 13456899999999999996433568889999999999998 454 8999999999
Q ss_pred HHHHHhhh---hhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCC
Q psy6178 505 SISTACCT---HMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIK 581 (912)
Q Consensus 505 ~l~~~~~~---~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~ 581 (912)
.|...|.. .+.++++.+|+.+..+.+. ...++...+|+.+ +..- +++..++-..+++.+.+.+.++++....
T Consensus 529 ~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne-~End~Lt~vme~i---V~~f-seElsPfA~eL~q~La~~F~k~l~~~~~ 603 (1010)
T KOG1991|consen 529 SFISNQEQADEKVSAHVPPIMQELLKLSNE-VENDDLTNVMEKI---VCKF-SEELSPFAVELCQNLAETFLKVLQTSED 603 (1010)
T ss_pred HHHhcchhhhhhHhhhhhHHHHHHHHHHHh-cchhHHHHHHHHH---HHHH-HHhhchhHHHHHHHHHHHHHHHHhccCC
Confidence 99999885 4899999999999887764 4556666666653 3333 2677788889999999999998885321
Q ss_pred CC--CCCC-CChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhh
Q psy6178 582 PE--KNKK-SDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDF 658 (912)
Q Consensus 582 ~~--~~~~-~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~ 658 (912)
.+ .+.+ ......|..+.++...+... ++....+-..+.|++..++.. +-.++.|.++.+...+ ..+-.+.
T Consensus 604 ~~~~~ddk~iaA~GiL~Ti~Til~s~e~~----p~vl~~le~~~l~vi~~iL~~--~i~dfyeE~~ei~~~~-t~~~~~I 676 (1010)
T KOG1991|consen 604 EDESDDDKAIAASGILRTISTILLSLENH----PEVLKQLEPIVLPVIGFILKN--DITDFYEELLEIVSSL-TFLSKEI 676 (1010)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhh-hhhhccc
Confidence 11 1111 11234577777777777541 122333334445555555554 2346677776665443 2334456
Q ss_pred HHhHHHHHHHHHHHHhc
Q psy6178 659 AHLLEPLVKQIVVLYSK 675 (912)
Q Consensus 659 ~p~l~~l~~~l~~~~~~ 675 (912)
.|-+-.+.+.+.+.|..
T Consensus 677 sp~mW~ll~li~e~~~~ 693 (1010)
T KOG1991|consen 677 SPIMWGLLELILEVFQD 693 (1010)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 67777777777766653
No 10
>KOG2020|consensus
Probab=99.96 E-value=4e-24 Score=248.48 Aligned_cols=856 Identities=14% Similarity=0.172 Sum_probs=498.9
Q ss_pred HHHHHHHHHHhccC-CChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHH
Q psy6178 7 LDTVYAVVHTLYLN-PNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHV 85 (912)
Q Consensus 7 ~~~v~~al~~l~~~-~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~ 85 (912)
-.++.+|+...+.+ ++++.|.+|+++|.+||..|++|..|..+|+.++. ++++|||.+.|.+-|+++|+.+|.+++.
T Consensus 9 ~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~--~~~k~f~Lqlle~vik~~W~~~~~~~r~ 86 (1041)
T KOG2020|consen 9 DSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTN--PILKYFALQLLENVIKFRWNSLPVEERV 86 (1041)
T ss_pred HHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCC--chhheeeHHHHHHHHHHhcccCCccccH
Confidence 45677777777777 78999999999999999999999999999999766 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccC-----CChhHHHHHHHHHHHHHhh-cc-CcchHHHHHHHHhccc-chHHHHHHHHhhhhhhccc
Q psy6178 86 SLRDSLIEHLCRTNDT-----SGKNIITQLALALADLALQ-MS-AWEKPVVYIIEKLSHK-GSILALLEVLTVLPEEVNV 157 (912)
Q Consensus 86 ~lk~~Ll~~l~~~~~~-----~~~~v~~kl~~~la~l~~~-~~-~W~~~~~~l~~~~~~~-~~~~~~L~iL~~l~ee~~~ 157 (912)
.+|+.+++.+...+.. ..+.+++||+..+..++.+ +| .||++++++.+....+ ..++..+.+|..|.||+..
T Consensus 87 glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~ 166 (1041)
T KOG2020|consen 87 GLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELSMIILLLLSEEVFD 166 (1041)
T ss_pred HHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHHHHHHHHHHHHHhc
Confidence 9999999987653321 1368999999999999996 46 7999999999988776 7788999999999999987
Q ss_pred ccC---ChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHH---HHHHHHHhhc--------------------CCc
Q psy6178 158 LKL---GKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQT---KVLKCFTSWS--------------------SGS 211 (912)
Q Consensus 158 ~~~---~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~---~~l~~l~sWi--------------------~~~ 211 (912)
... +..++..++..+......+.+++..+..++. .. +.. ..+.++.+|| .+.
T Consensus 167 ~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~-~~-~~~atl~tl~~fl~wip~~~I~~tn~l~~~l~~~ln~~~ 244 (1041)
T KOG2020|consen 167 FSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKAN-SE-LLSATLETLLRFLEWIPLGYIFETNILELLLNKFLNAPE 244 (1041)
T ss_pred ccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhh-hH-HHHHHHHHHHHHhhcccHHHHHHhhhHHHHHHhccchHH
Confidence 322 2222333455555556777788877666543 22 443 4556667898 255
Q ss_pred chHHHHHHHHhhchhhhccCC--chHHHHH------HHHHHhchHHHHHHHhcCCCh-HHHhhHHHHHHHHHHHHHHHHH
Q psy6178 212 LHDAATDCVSALLPILEYNNN--FDAVNLN------VFTCILSLEEQFHMAVAHEDL-EKCMNYCKLFTELAESLLDRIV 282 (912)
Q Consensus 212 l~~~a~~~l~~~l~~~~~~~~--~~~l~~~------l~~~v~~l~~~~~~~~~~~d~-~~~~~~~~l~~~l~~~~~~~l~ 282 (912)
.+..|++|+.++++......+ .....+. .++..++..+.+... ...|. .+.+.++.+++.+++.+...+.
T Consensus 245 ~r~~al~CL~ei~s~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~~~~~~-~~~dq~~fi~~l~~~l~~f~~~~~~lle 323 (1041)
T KOG2020|consen 245 LRNNALSCLTELLSRKRSIYERKTVPMFNLTIYQLRSIPQDLDIPEVYSSL-SDEDQDSFIEKLAQFLSLFFEQHIALLE 323 (1041)
T ss_pred HHHHHHHHHHHHHhccccchhHHhHHHHHHHHHHHHHhhhhhchhhhhhcc-cHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 677899999999987643111 0111111 222223333333322 22344 6789999999999999999988
Q ss_pred hcccCCCcchhhHHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccC-----ch-------------hhhhc
Q psy6178 283 NESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKN-----DD-------------SLTVL 344 (912)
Q Consensus 283 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~-----~~-------------~~~~~ 344 (912)
... .+..........++..+..++.+ +-..+++.|..+...+...+ .. -.+..
T Consensus 324 ~~~--~~~~~~~~~~~~li~i~~~~~se-------~~~~~ld~W~~lv~~l~~~~~~ll~~s~~~~~~~~~~ri~~rk~~ 394 (1041)
T KOG2020|consen 324 SSL--SQRPVLLEALLELILISTIEPSE-------IFKICLDYWNKLVADLYYNKPPLLQLSTTLPSISDYSRIDFRKSI 394 (1041)
T ss_pred Cch--hhhhHHHHHHHHHHHHhccCchh-------HHHHHHHHHHHHHHhhhcccccccccccccccccchhccchHHHH
Confidence 733 11111122222333334334444 44449999999887654420 00 01345
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCC-Cccc---------cchHHHHHhHhHHHHHhhhHhcCcH---HHHHHHHHHhhcCC
Q psy6178 345 FKPHVERLIGALCKHCQLEPDLEG-LLEE---------DHDFYDFRLKVSELVKDVVFIVGSS---TCFRHMFNSLHENN 411 (912)
Q Consensus 345 ~~~~~~~ll~~l~~k~~~p~d~~~-~~ee---------~~~f~~~R~~~~d~l~~~~~~l~~~---~~l~~l~~~l~~~~ 411 (912)
|..++.++--..+.+|.-|+..-- +.+. ..+|..+=..+.+.+......-+.. -....+...+.+..
T Consensus 395 y~~~~~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~~~~~kl~~~l~~~~ 474 (1041)
T KOG2020|consen 395 YQEFLSKLRLLRLERMAKPEEVLIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVVDTEKIMTEKLAIQLDGDE 474 (1041)
T ss_pred HHHHHHHHHHHHHHHhcCchheeEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhhhhhhhhhHhHHHHhhHHH
Confidence 566677766666777776654210 0011 2333333223333333222221111 01112222333234
Q ss_pred CCccchhHHHHHHHHhhcccCCC-CcCcHHHHHHHH---hcCCC-CchHH-HHHHHHHHHHHHHHHHhcCcCcHHHHHHH
Q psy6178 412 VMWEQTEAALYIMQSVAKNVLPE-ENDVVPKVVEAI---LHLPP-STHIA-VRYTSLLLLGELCEWIDKHPHTLETILNF 485 (912)
Q Consensus 412 ~~w~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l---~~~~~-~~~~~-v~~t~~~~lg~y~~~l~~~p~~l~~~l~~ 485 (912)
..|..+---++++++++..+.+. .+..+..++.-+ +.... ..+.+ +..-.+.++|+|..|+..|..+|.++...
T Consensus 475 ~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~p~Fl~~h~~~Lkt~~~~ 554 (1041)
T KOG2020|consen 475 WSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGKDNKAVIASNIMYVVGQYPRFLKAHWKFLKTVVHK 554 (1041)
T ss_pred HhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 56887778888888877765432 122222222211 11111 11233 34445789999999999998888888899
Q ss_pred HHHhcCC--CChHHHHHHHHHHHHHHhhhhh--------hhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHh-cCCH
Q psy6178 486 LLHCLQQ--PGLASVTANALQSISTACCTHM--------VGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVS-DMPQ 554 (912)
Q Consensus 486 l~~~l~~--~~v~~~A~~al~~l~~~~~~~L--------~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~-~~p~ 554 (912)
++..++. +.++..||..|.++...|+.+. .|+.+.++..+..+.. .+....+...++++|.++. ..++
T Consensus 555 L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~-~l~~~q~~~~~~al~~~V~~~~~~ 633 (1041)
T KOG2020|consen 555 LFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITE-DLQPQQRHTFYEALGLMVSAEIDP 633 (1041)
T ss_pred HHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhc-CchHHHHHHHHHHHHHHHHHhCCH
Confidence 9887775 4489999999999999998752 2344444443333322 2455567889999995554 4444
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcCCCCCC-----CCCChHHHHHHHHHHhhhcCCCcCCCC----CChHHHHHhHhHH
Q psy6178 555 DQISEALKQLCLVQVKPLCELIEKQIKPEKN-----KKSDPVIWLDRLAAIFKHTSPRIMSEP----HPCQGVITELWPV 625 (912)
Q Consensus 555 ~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~l~~~~~~l~~~~~~~~----~~~~~~~~~~~~~ 625 (912)
+....+......---..+..++.++...++. ....+...+...+.+.+.++++..... .....++...-+.
T Consensus 634 ~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~i~~~~~~~~~sl~~~f~~~~~~~~~d~~~l~~~~s~~ 713 (1041)
T KOG2020|consen 634 AKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLNILKTNSRALTSLGSTFVPQLGKIYLDMLQLYIKQSEL 713 (1041)
T ss_pred hhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHHHHHhHHHHHHhcCcccccccccccHHHHHHHHHhccc
Confidence 5555555554443334444444333111110 001112223344444444444221000 0011111111111
Q ss_pred HHHHHHhhcc---chhHHHHHHHHHHHH----HHHhch----h--hHHhHHHHHHHHHHHHhc----CCCcchHHhHHHH
Q psy6178 626 LSKTCETYQQ---DARVMEHSSRCLRYA----IRCVGK----D--FAHLLEPLVKQIVVLYSK----HPHSSFLYLGSIL 688 (912)
Q Consensus 626 l~~~l~~~~~---~~~v~e~~~~~~~~~----~~~l~~----~--~~p~l~~l~~~l~~~~~~----~~~~~~L~~~~~l 688 (912)
+......-.. -.+.+.....+-+.+ ....+. + ...++|+.+...+-.|.. .+.+.-+.+-..+
T Consensus 714 v~~~~~~~~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~nvPd~r~~~vl~l~~~i 793 (1041)
T KOG2020|consen 714 VSINVTAGGSEKTKTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLLDAVLFDYLDNVPDYRENEVLSLNATI 793 (1041)
T ss_pred ccHHHhcccccccccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHHHHHHHHHHccCcchhcchHHHhhhhh
Confidence 1111111000 011111111111111 111111 1 122445555544444432 2233444555556
Q ss_pred HHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCcccc--CchhhHHHHHHHHHhccc
Q psy6178 689 VDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFL--TSSFISSVMQCGILATHL 766 (912)
Q Consensus 689 v~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l--~~~~l~~i~~~~~~~l~~ 766 (912)
+..+|+ -+...+...+..+....+.+++. ++.+.||....||.++..+...++..+. +++.+..+++....+...
T Consensus 794 v~~Lg~-~i~~~~~~i~~~v~~c~l~m~~~--d~qe~~e~~~~f~~lle~l~~~~~~~~~~l~~~~~~~~~~si~~~f~h 870 (1041)
T KOG2020|consen 794 VPKLGE-FIPAELPLINIAVLECTLEMINK--DFQEYPEHRLNFLLLLEALLLFCFPAFSELPADQVKLVSDSIVWAFHH 870 (1041)
T ss_pred hhhhhh-HhhhhccHHHHHHHhhhhhcccc--ccccchHHHHHHHHHHHHHHHhhhHHHHcCCchhhHHHHHHHHHHHHh
Confidence 667776 22222223333344444554443 6778999999999999999988877774 555566777777777877
Q ss_pred CCchhHHHHHHHHHHHhhccCCCCcccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccccCCCcchhhHHHHH
Q psy6178 767 DHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVL 846 (912)
Q Consensus 767 ~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~~~~~~~~~~~a~vL 846 (912)
..++...+.++.+..+.....+.. ...+.++.+++..+....+..+.+..+.+....-+-.+
T Consensus 871 ~~r~i~~~~l~~l~~l~k~~~~~~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~L~~ 932 (1041)
T KOG2020|consen 871 TMRNIAENGLNILLELLKNLAEME------------------KFANAFYQTYFLSLLQKIIAVLTDTDHKAGFTKQVLKL 932 (1041)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhh------------------HHHHHHHHHHHHHHHHHHHHHHhccchhhcchHHHHHH
Confidence 778888999888888876543210 24566677777777777777777655555444444444
Q ss_pred HHHHHhChHH-HHHHHH-------------H----HHh-cCCCCCCCCCCCCCHHHHHHHHHHHhhhhhh-hhHHHHHHH
Q psy6178 847 YELISVDRQV-SNQWLQ-------------D----TIS-QLPKNTPAGMNAATPEQLIEFHSQVTRSESA-YDVGQALKE 906 (912)
Q Consensus 847 ~~l~~~~~~~-~~~wl~-------------~----~l~-~~p~~~~~~~~~~t~~~k~~f~~~l~~~~~~-~~~~~~~~~ 906 (912)
..+.+..-+. +.+|+. + .+. .+| +.++++.+.|...++...+. ..+++.++|
T Consensus 933 ~~l~~l~~~~~~~~~l~~~~~v~~n~~~L~e~i~~~l~~~f~--------~~~~~~v~~~~~~~~~~~~~~~~~k~~~~d 1004 (1041)
T KOG2020|consen 933 QFLFRLVESAKLHTPLLQGNVVHGNQAFLREYIYGLLRPAFP--------NLTDEQVRAFDIGLFDECKDVSPFKDHVRD 1004 (1041)
T ss_pred HHHHHHHHhhhHHHhhccccccchHHHHHHHHHHHhhhhhch--------hhchHHHHHHhHHHHHHhcccchhhcchhh
Confidence 4444422111 222222 1 111 344 46678888888888876544 456666655
No 11
>KOG1992|consensus
Probab=99.93 E-value=2.4e-20 Score=203.35 Aligned_cols=705 Identities=13% Similarity=0.179 Sum_probs=398.6
Q ss_pred cHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccC-------C
Q psy6178 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFF-------E 78 (912)
Q Consensus 6 ~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~-------~ 78 (912)
+++.+.+.+..-.+ +||+.|+-|++.|++.+..+.--.....|+.+++ .+.++|.-||..+||.|+++|. .
T Consensus 3 ~le~l~~~l~qTl~-pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~-~d~~~r~aaav~fKN~iKr~W~~~~~~~~~ 80 (960)
T KOG1992|consen 3 NLETLANYLLQTLS-PDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQ-QDPQIRVAAAVYFKNYIKRNWIPAEDSPIK 80 (960)
T ss_pred cHHHHHHHHHhcCC-CCCccCchHHHHHHHhccCCCchHHHHHHHhccC-cChhHHHHHHHHHHHHHHhccCcCCCCccc
Confidence 46777777776554 5899999999999999988654445566666654 3589999999999999999996 3
Q ss_pred CCcccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhh-cc-CcchHHHHHHHHhccc--chHHHHHHHHhhhhhh
Q psy6178 79 LPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQ-MS-AWEKPVVYIIEKLSHK--GSILALLEVLTVLPEE 154 (912)
Q Consensus 79 l~~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~-~~-~W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~ee 154 (912)
+.+++++.||..++..+-+ .+ ..+..+|..+|..++.+ +| .||+++++++..++++ .....+|..-..+--.
T Consensus 81 i~~~~~e~ikslIv~lMl~---s~-~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr 156 (960)
T KOG1992|consen 81 IIEEDREQIKSLIVTLMLS---SP-FNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKR 156 (960)
T ss_pred cchhHHHHHHHHHHHHHhc---Cc-HHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHh
Confidence 5566889999999998765 33 47999999999999975 67 7999999999999987 3334444433333333
Q ss_pred cccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcC---CCChHHHHHHHHHHHhhcCCcchHHHHHHHHhhchhhhccC
Q psy6178 155 VNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANC---GDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNN 231 (912)
Q Consensus 155 ~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~---~~~~~~~~~~l~~l~sWi~~~l~~~a~~~l~~~l~~~~~~~ 231 (912)
+....-+++.-.++|..+.........+|.+..+-. .++.......++.+. .++-+..... .+
T Consensus 157 ~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vll-------------l~~klfysLn-~Q 222 (960)
T KOG1992|consen 157 YRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLL-------------LICKLFYSLN-FQ 222 (960)
T ss_pred cCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHH-------------HHHHHHHhhh-cc
Confidence 222112233445677777777777777776655432 122221222222221 1222222111 11
Q ss_pred CchHHHHHHHHHHhchHHHHHH-------HhcCCChHH-------HhhHHHHHHHHHHHHHHHHHhcccCCCcchhhH--
Q psy6178 232 NFDAVNLNVFTCILSLEEQFHM-------AVAHEDLEK-------CMNYCKLFTELAESLLDRIVNESMTKQQPFSIK-- 295 (912)
Q Consensus 232 ~~~~l~~~l~~~v~~l~~~~~~-------~~~~~d~~~-------~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~-- 295 (912)
+-.+.++.-+.. |...|.+ .+. .|++. ...+|++++-..+.|..-+.... ..+.
T Consensus 223 DiPEFFEdnm~~---wM~~F~k~l~~~~p~le-~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl------~~fv~~ 292 (960)
T KOG1992|consen 223 DIPEFFEDNMKT---WMGAFHKLLTYDNPLLE-SDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFL------PDFVTA 292 (960)
T ss_pred cchHHHHhhHHH---HHHHHHHHHhccCcccc-cCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhH------HHHHHH
Confidence 222333322211 1111111 122 23333 23445555444443332222111 1111
Q ss_pred HHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcchHHH--HHHHHHHHhhcCCCC------CCC
Q psy6178 296 ALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHV--ERLIGALCKHCQLEP------DLE 367 (912)
Q Consensus 296 ~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~--~~ll~~l~~k~~~p~------d~~ 367 (912)
+-+++-..+.++.||. ....++.|.....+. +.|..+| .+.+..+.+++..|. |+|
T Consensus 293 ~W~LL~~~s~~~kyD~------Lvs~Al~FLt~V~~r----------~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeE 356 (960)
T KOG1992|consen 293 TWNLLVSTSPDTKYDY------LVSKALQFLTSVSRR----------PHYAELFEGENVLAQICEKVVLPNLILREEDEE 356 (960)
T ss_pred HHHHHHhcCCCccHHH------HHHHHHHHHHHHHhh----------hhhHhhhcchHHHHHHHHhhcccccccchhhHH
Confidence 2344444555677873 677889998887653 2222222 245556666666653 222
Q ss_pred ---CCc------c-ccchHHHHHhHhHHHHHhhhHhcCcH--HHHHHHHHH-hh----cCCCCccchhHHHHHHHHhhcc
Q psy6178 368 ---GLL------E-EDHDFYDFRLKVSELVKDVVFIVGSS--TCFRHMFNS-LH----ENNVMWEQTEAALYIMQSVAKN 430 (912)
Q Consensus 368 ---~~~------e-e~~~f~~~R~~~~d~l~~~~~~l~~~--~~l~~l~~~-l~----~~~~~w~~~Ea~L~~l~~iae~ 430 (912)
++. | |+.|-...|+.+.|+++..+...... .++....+. +. +++.+|...+.++|.+.+++-.
T Consensus 357 lFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik 436 (960)
T KOG1992|consen 357 LFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIK 436 (960)
T ss_pred HhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhh
Confidence 111 1 23455667888889999887765332 122222222 22 2678999999999999999865
Q ss_pred cCCC------CcCc--H-----HHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--h
Q psy6178 431 VLPE------ENDV--V-----PKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--L 495 (912)
Q Consensus 431 ~~~~------~~~~--l-----~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v 495 (912)
.... .++. + .++.+-|.+-...++|.++..++..+.-+-..+ .|+++...++.+.+.+..+. |
T Consensus 437 ~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql--~~~~lm~~~p~li~~L~a~s~vv 514 (960)
T KOG1992|consen 437 GQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQL--GKEHLMALLPRLIRFLEAESRVV 514 (960)
T ss_pred cchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccC--ChHHHHHHHHHHHHhccCcchHH
Confidence 3221 1111 1 122333332122478999999987665544433 26789999999999888754 8
Q ss_pred HHHHHHHHHHHHHHhhh---------hhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy6178 496 ASVTANALQSISTACCT---------HMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCL 566 (912)
Q Consensus 496 ~~~A~~al~~l~~~~~~---------~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~ 566 (912)
-+.||+++.++-..|.. .++||...++..+....+..-+ .+.+.+|++|..+++.++. ....+..
T Consensus 515 hsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~-~EneylmKaImRii~i~~~-----~i~p~~~ 588 (960)
T KOG1992|consen 515 HSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGK-AENEYLMKAIMRIISILQS-----AIIPHAP 588 (960)
T ss_pred HHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcc-cccHHHHHHHHHHHHhCHH-----hhhhhhh
Confidence 88999999998655543 4677777777766644333223 3568999999999998763 3344556
Q ss_pred HhHHHHHHHHHhc-CCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHH
Q psy6178 567 VQVKPLCELIEKQ-IKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSR 645 (912)
Q Consensus 567 p~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~ 645 (912)
+++.+|.+++... ++|++. .--+-.++.+|.+++..... .+..+......++|++..++.. +-.+.+-.+..
T Consensus 589 ~~l~~Lteiv~~v~KNPs~P--~fnHYLFEsi~~li~~t~~~---~~~~vs~~e~aL~p~fq~Il~e--DI~EfiPYvfQ 661 (960)
T KOG1992|consen 589 ELLRQLTEIVEEVSKNPSNP--QFNHYLFESIGLLIRKTCKA---NPSAVSSLEEALFPVFQTILSE--DIQEFIPYVFQ 661 (960)
T ss_pred HHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 6677777776654 234432 11233578999999887653 2234556677889998888764 22344455555
Q ss_pred HHHHHHHHhch----hhHHhHHHHHHHHHHHHh-cCCCcchHHhHHHHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcC
Q psy6178 646 CLRYAIRCVGK----DFAHLLEPLVKQIVVLYS-KHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEED 720 (912)
Q Consensus 646 ~~~~~~~~l~~----~~~p~l~~l~~~l~~~~~-~~~~~~~L~~~~~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~ 720 (912)
.+.-.+...+. .+.|++|+++.- ..+. +...+..+.++..++.. |. ..... .+-+..+. .+|+.|..+
T Consensus 662 lla~lve~~~~~ip~~~~~l~~~lLsp--~lW~r~gNipalvrLl~aflk~-g~-~~~~~-~~~l~~iL-GifqkLiaS- 734 (960)
T KOG1992|consen 662 LLAVLVEHSSGTIPDSYSPLFPPLLSP--NLWKRSGNIPALVRLLQAFLKT-GS-QIVEA-ADKLSGIL-GIFQKLIAS- 734 (960)
T ss_pred HHHHHHHhcCCCCchhHHHHHHHhcCH--HHHhhcCCcHHHHHHHHHHHhc-Cc-hhhcc-cccchhHH-HHHHHHhcC-
Confidence 55555555444 334444433311 1122 23344444454444422 11 10000 00011111 122222211
Q ss_pred CCCCCCchHHHHHHHHHHHHHhCCccccCchhhHHHHHHHHHhcccCCchh-HHHHHHHHHHHhh
Q psy6178 721 GLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREA-NSTVMKFFYDLIH 784 (912)
Q Consensus 721 ~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~~~l~~i~~~~~~~l~~~~~~~-~~~~~~fl~~li~ 784 (912)
+-.-..-|.|+.+++...|...+. +.+..++.....-+.....+- ++....|+.-+..
T Consensus 735 -----ka~Dh~GF~LLn~i~~~~~~~~~~-py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~i 793 (960)
T KOG1992|consen 735 -----KANDHHGFYLLNTIIESIPPNELA-PYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTI 793 (960)
T ss_pred -----cccchhHHHHHHHHHhcCCHhhhh-HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 111134578888888887644322 345555554444444443332 4566666655544
No 12
>KOG2274|consensus
Probab=99.84 E-value=1.8e-15 Score=167.47 Aligned_cols=719 Identities=16% Similarity=0.184 Sum_probs=387.2
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHhhcChhH-HHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCC--------
Q psy6178 9 TVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYA-WKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFEL-------- 79 (912)
Q Consensus 9 ~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~a-w~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l-------- 79 (912)
.+.+.+....+ +|+..|.+|+..|.++..+++- -.+|.-..+.. .+.+.|++|+..|++.|.+||...
T Consensus 5 ~ii~~L~~~ls-~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~--~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~ 81 (1005)
T KOG2274|consen 5 AIIELLSGSLS-ADQNVRSQAETQLKQLELTEGFGVALAEVAANKD--ASLPLRQIALVLLKRYIEKHWSPNFEAFRYPL 81 (1005)
T ss_pred HHHHHHHhhcC-CChhHHHHHHHHHhccccchHHHHHHHHHHhCcc--cCchHHHHHHHHHHHHHHHhCCChHhhccCCC
Confidence 45555666554 5999999999999999998872 22333333332 358899999999999999999742
Q ss_pred --CcccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHh-hcc-CcchHHHHHHHHhccc--chHHHHHHHHhhhhh
Q psy6178 80 --PSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLAL-QMS-AWEKPVVYIIEKLSHK--GSILALLEVLTVLPE 153 (912)
Q Consensus 80 --~~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~-~~~-~W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~e 153 (912)
+.+.+..||+.|++.+.. . ++.+++-.+.+++.++. .+| +||+.++.+..+++++ ++....+++|..+..
T Consensus 82 ~~~e~~K~~IRe~Ll~~l~~---s-n~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ 157 (1005)
T KOG2274|consen 82 IVSEEVKALIREQLLNLLDD---S-NSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSD 157 (1005)
T ss_pred cccHHHHHHHHHHHHhhhhc---c-ccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 234567888888888763 2 35799999999998887 467 7999999999999865 667788999988888
Q ss_pred hcccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHH--HHHHHhhcCCcchHHHHHHHHhhchhhhccC
Q psy6178 154 EVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKV--LKCFTSWSSGSLHDAATDCVSALLPILEYNN 231 (912)
Q Consensus 154 e~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~--l~~l~sWi~~~l~~~a~~~l~~~l~~~~~~~ 231 (912)
|+....+ +.......+.+...+.- .... +...+..+ ++-+. ++. .+.+...+... .
T Consensus 158 ev~~ee~--------~~~~~~~l~~m~~~f~~-~~~~--s~~~~~~aa~~~lf~---------sc~-~li~~~~e~~~-~ 215 (1005)
T KOG2274|consen 158 EVDVEEM--------FFVGPVSLAEMYRIFAL-TIVY--SIITRLGAARGKLFT---------SCL-TLITNVEEVWA-E 215 (1005)
T ss_pred HHHHHHH--------hcccccchhhhhhhhhh-cccc--chhHHHHhhhhHHHH---------HHH-HHHhHHHHHHH-H
Confidence 7753000 00000011111111110 0000 11111111 12111 111 11121111110 0
Q ss_pred CchHHHHHHHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHhh------hc
Q psy6178 232 NFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLIC------VG 305 (912)
Q Consensus 232 ~~~~l~~~l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ll~~------~~ 305 (912)
.....+..+++..+.......+.-..+|.-....+.+.++.+++.++.++...... .....+.++..++.. .+
T Consensus 216 ~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~-~~~~vw~~~~~~~~~yir~~V~~ 294 (1005)
T KOG2274|consen 216 HVKVFLSQILNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMG-MFSIVWQTLEKILAVYVRESVNG 294 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHh-hhhHHHHHHHHHHhhhhhhhccc
Confidence 01233333444333222211111112334457788899999999988887654310 000011222222211 11
Q ss_pred C-CCCcc---cc-c---CccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCC--CCCc-----
Q psy6178 306 H-HDYEA---TN-L---GGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDL--EGLL----- 370 (912)
Q Consensus 306 ~-~~~~~---~~-~---~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~--~~~~----- 370 (912)
. .+++. ++ . -++..-..++|...+.+.... ....+..+..++..+..-++.+++. .|..
T Consensus 295 ~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~------~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~f 368 (1005)
T KOG2274|consen 295 TEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFL------SKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQF 368 (1005)
T ss_pred cccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHH------HHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHh
Confidence 0 01110 00 0 022334567787776654221 1111112223333344444444321 1211
Q ss_pred --cccchHHHHHhHhHHHHHhhhHhcCcHHHHHHHHH----Hhhc--------CCCCccchhHHHHHHHHhhcccCCCCc
Q psy6178 371 --EEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFN----SLHE--------NNVMWEQTEAALYIMQSVAKNVLPEEN 436 (912)
Q Consensus 371 --ee~~~f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~----~l~~--------~~~~w~~~Ea~L~~l~~iae~~~~~~~ 436 (912)
+|.+. ..-|....|.+..+..-+|.+. +..+.+ .++. ....|...|+++++..++..+ +..+
T Consensus 369 V~dEd~~-~~~~~~~rd~~~~v~~~f~~~~-i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~--~~~d 444 (1005)
T KOG2274|consen 369 VADEDDG-YTARISVRDLLLEVITTFGNEG-INPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID--DAND 444 (1005)
T ss_pred hccCCCC-chhhhhHHHHHHHHHHhccchh-hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC--cchH
Confidence 11112 4456677777777777666542 222222 2221 345788899999998888743 1234
Q ss_pred CcHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCC--CC-hHHHHHHHHHHHHHHhhh
Q psy6178 437 DVVPKVVEAILH-LPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQ--PG-LASVTANALQSISTACCT 512 (912)
Q Consensus 437 ~~l~~l~~~l~~-~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~--~~-v~~~A~~al~~l~~~~~~ 512 (912)
+.+..+..++.. +..+..|.+...++++++.|+.-+..+|+.+...++..+.+++- |. ++.+|+.+|...| -.+
T Consensus 445 d~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~ 522 (1005)
T KOG2274|consen 445 DKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVK 522 (1005)
T ss_pred HHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--Cce
Confidence 445555544332 22334577777999999999988777899999999988887764 32 6666666666666 224
Q ss_pred hhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHH------HH-------------HHHHHHHHHhHHHHH
Q psy6178 513 HMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQ------IS-------------EALKQLCLVQVKPLC 573 (912)
Q Consensus 513 ~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~------~~-------------~~l~~l~~p~~~~l~ 573 (912)
.+.|..|.+++.+..+... -+.+..-.+||+++.++.--|... .. ++...+.+.++..+-
T Consensus 523 vl~~~~p~ild~L~qlas~-~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~ 601 (1005)
T KOG2274|consen 523 VLLSLQPMILDGLLQLASK-SSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELL 601 (1005)
T ss_pred eccccchHHHHHHHHHccc-ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 5778999999998877664 456677889999999987544211 11 111122222222222
Q ss_pred HHHHhcC----------------CCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccch
Q psy6178 574 ELIEKQI----------------KPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDA 637 (912)
Q Consensus 574 ~~~~~~~----------------~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 637 (912)
+.....+ +.++.....+.-.++.|.++.|+-.++. ...+...++|.+.++. .+.+|.
T Consensus 602 q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL------~~~l~~~~FpaVak~t-lHsdD~ 674 (1005)
T KOG2274|consen 602 QIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL------PNLLICYAFPAVAKIT-LHSDDH 674 (1005)
T ss_pred HHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc------cHHHHHHHhHHhHhhe-eecCCh
Confidence 2111111 0112122334456889999999866532 1235677788888876 667889
Q ss_pred hHHHHHHHHHHHHHHHhchh-------hHHhHHHHHHHHHHHHhc--CCCcch-H-HhHHHHHHHhcCccchHHHHHHHH
Q psy6178 638 RVMEHSSRCLRYAIRCVGKD-------FAHLLEPLVKQIVVLYSK--HPHSSF-L-YLGSILVDEYATSHCVSGLLDMVQ 706 (912)
Q Consensus 638 ~v~e~~~~~~~~~~~~l~~~-------~~p~l~~l~~~l~~~~~~--~~~~~~-L-~~~~~lv~~~g~~~~~~~l~~l~~ 706 (912)
++++...+|++..+..-.+. .+-.+.-+++.+.+.... ...+++ . .++..++..+|+ +..+.+.+++.
T Consensus 675 ~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~-el~~n~d~IL~ 753 (1005)
T KOG2274|consen 675 ETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASS-ELGPNLDQILR 753 (1005)
T ss_pred HHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHH-HhchhHHHHHH
Confidence 99999999999987762111 111233444433332221 222222 1 135566777776 44555555444
Q ss_pred HHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCcccc---C-------chhhHHHHHHHHHh--cccCCch---h
Q psy6178 707 AFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFL---T-------SSFISSVMQCGILA--THLDHRE---A 771 (912)
Q Consensus 707 ~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l---~-------~~~l~~i~~~~~~~--l~~~~~~---~ 771 (912)
.++. .|++. +.+-++++.......++-+.+..++ + .+.++.++.-.+.. +.-.+.+ .
T Consensus 754 Avis----rmq~a----e~lsviQsLi~VfahL~~t~~~~~l~FL~Slp~~~g~~AlefVMteW~srqhl~~g~ye~kv~ 825 (1005)
T KOG2274|consen 754 AVIS----RLQQA----ETLSVIQSLIMVFAHLVHTDLDQLLNFLSSLPGPTGEPALEFVMTEWTSRQHLYFGEYEGKVS 825 (1005)
T ss_pred HHHH----HHHHh----hhHHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHhhhhhhhhhhhchhh
Confidence 4433 33332 3344555554444444434333321 1 13566655432211 1122222 5
Q ss_pred HHHHHHHHHHHhhcc
Q psy6178 772 NSTVMKFFYDLIHNN 786 (912)
Q Consensus 772 ~~~~~~fl~~li~~~ 786 (912)
.++.|..+..+++..
T Consensus 826 i~alc~al~~~~~~d 840 (1005)
T KOG2274|consen 826 IKALCKALQHLISTD 840 (1005)
T ss_pred HHHHHHHHHhhhccC
Confidence 677788888877653
No 13
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=9e-13 Score=143.04 Aligned_cols=611 Identities=14% Similarity=0.101 Sum_probs=338.6
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCC-----CCcccH
Q psy6178 10 VYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFE-----LPSESH 84 (912)
Q Consensus 10 v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~-----l~~~~~ 84 (912)
+.+...+-.+ .|+..|+.|+..|.+++|.|.-...|.+++.... .+.+||.-||..+||||.+.|.. .+++++
T Consensus 5 llqcf~qTld-ada~~rt~AE~~Lk~leKqPgFv~all~i~s~de-~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek 82 (970)
T COG5656 5 LLQCFLQTLD-ADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDE-GDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEK 82 (970)
T ss_pred HHHHHHHHhc-cCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhcc-CCchhhHHHHHHHhhhhhhhhhhcccCCCCCccc
Confidence 3343333333 5889999999999999999999999999998853 36899999999999999999986 455678
Q ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhh-cc--CcchHHHHHHHHhccc--chHHHHHHHHhhhhhhccccc
Q psy6178 85 VSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQ-MS--AWEKPVVYIIEKLSHK--GSILALLEVLTVLPEEVNVLK 159 (912)
Q Consensus 85 ~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~-~~--~W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~ee~~~~~ 159 (912)
...|+.+++.+......+|...|..+..++..++-. ++ -|+ +++...+.+.++ .++..+|-.+..+..-.. .+
T Consensus 83 ~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayR-wk 160 (970)
T COG5656 83 SEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYR-WK 160 (970)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHh-hh
Confidence 888888888776644444556666676655555543 34 388 778888888776 445555655555544221 12
Q ss_pred CChhhHHHHHHHHHhhhhHHHHHHHHhhhcCC-CChHHHHHHHHHHHhhc---------CCcchHHHHHHHHhhchhhhc
Q psy6178 160 LGKNRREEFEEELKAAGPIVIEFLKTCQANCG-DNVSLQTKVLKCFTSWS---------SGSLHDAATDCVSALLPILEY 229 (912)
Q Consensus 160 ~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~-~~~~~~~~~l~~l~sWi---------~~~l~~~a~~~l~~~l~~~~~ 229 (912)
... +|..+...+....|.+..+=..+..... ...++...++|.+++-+ .++.+-........++++.-.
T Consensus 161 ~nd-eq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qkplp 239 (970)
T COG5656 161 YND-EQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPLP 239 (970)
T ss_pred ccc-hHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcCCCC
Confidence 222 3333444444455665554444333221 24567777888877644 112222223333333332111
Q ss_pred cCCchHHHHHHHHHHhchHHHHHHHhcCCCh------HHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHh-
Q psy6178 230 NNNFDAVNLNVFTCILSLEEQFHMAVAHEDL------EKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLI- 302 (912)
Q Consensus 230 ~~~~~~l~~~l~~~v~~l~~~~~~~~~~~d~------~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ll~- 302 (912)
. .++++.+ .+...+. ....++-|++...++..... +.. .........++.++.
T Consensus 240 ~------------evlsldp----evRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~--~y~--~f~~~f~t~vp~il~t 299 (970)
T COG5656 240 N------------EVLSLDP----EVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKK--SYL--SFYITFMTRVPMILAT 299 (970)
T ss_pred H------------HHhccCh----hhccccchhhhhHHHHHHHHHHHHHhcchhHHH--HHH--HHHHHHHHHHHHHHHH
Confidence 0 0001100 0000110 11223334443333221111 000 000000011222221
Q ss_pred ------hhcCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCC----CCC--CCCc
Q psy6178 303 ------CVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLE----PDL--EGLL 370 (912)
Q Consensus 303 ------~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p----~d~--~~~~ 370 (912)
.-+..+.. .+...+-|...+.+.-.+ .++.+...+|++.- ++....+| +++ |..+
T Consensus 300 ffkqie~wgqgqLW-------lsd~~LYfi~~Fve~cv~--~d~tw~l~ePhlq~----ii~~vIfPllc~see~eElfE 366 (970)
T COG5656 300 FFKQIEEWGQGQLW-------LSDIELYFIDFFVELCVD--ADQTWRLMEPHLQY----IISGVIFPLLCLSEEEEELFE 366 (970)
T ss_pred HHHHHHHhhcCCee-------cchHHHHHHHHHHHHHhh--hHhhHhhhccHHHH----HHHhhhhhhcCCChhhHHHHh
Confidence 22455666 677777777777665333 23456666777654 44444443 332 2223
Q ss_pred cccchHHHHHhHhHHH--------HH--hhhHhcCcHHH----HHHHHHHhhc-----CC-CCccchhHHHHHHHHhhcc
Q psy6178 371 EEDHDFYDFRLKVSEL--------VK--DVVFIVGSSTC----FRHMFNSLHE-----NN-VMWEQTEAALYIMQSVAKN 430 (912)
Q Consensus 371 ee~~~f~~~R~~~~d~--------l~--~~~~~l~~~~~----l~~l~~~l~~-----~~-~~w~~~Ea~L~~l~~iae~ 430 (912)
+|.++|.+...+..|. +. -.+..=+++.. +..+.+.+.+ ++ .+-++.|.|++.+.++..-
T Consensus 367 nDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~ 446 (970)
T COG5656 367 NDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSF 446 (970)
T ss_pred cCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHH
Confidence 4455554322222111 11 11111122333 3444444532 12 4567899999999999994
Q ss_pred cCCCCcCcHHHHHHH-Hhc--CCC--CchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHH
Q psy6178 431 VLPEENDVVPKVVEA-ILH--LPP--STHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANAL 503 (912)
Q Consensus 431 ~~~~~~~~l~~l~~~-l~~--~~~--~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al 503 (912)
+.. .+.+..+++. +.. +|. +..-.++..+|.++++|++-++ .+..+..+++....++.+.+ |+-.|+-|+
T Consensus 447 itk--~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfk-d~~ill~aye~t~ncl~nn~lpv~ieAalAl 523 (970)
T COG5656 447 ITK--MSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFK-DNGILLEAYENTHNCLKNNHLPVMIEAALAL 523 (970)
T ss_pred hcc--CchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHhcCCcchhhhHHHHH
Confidence 432 3334444332 111 121 3456799999999999987775 35566777777777777643 888999999
Q ss_pred HHHHHHhh--hhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhc--
Q psy6178 504 QSISTACC--THMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQ-- 579 (912)
Q Consensus 504 ~~l~~~~~--~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~-- 579 (912)
.-|..+-. ..+..|+|..|+.+..+.+. ...+....+|+++ ++.. +++..++-..+...+.+++-++...-
T Consensus 524 q~fi~~~q~h~k~sahVp~tmekLLsLSn~-feiD~LS~vMe~f---Ve~f-seELspfa~eLa~~Lv~qFlkiaq~l~e 598 (970)
T COG5656 524 QFFIFNEQSHEKFSAHVPETMEKLLSLSNT-FEIDPLSMVMESF---VEYF-SEELSPFAPELAGSLVRQFLKIAQSLLE 598 (970)
T ss_pred HHHHhchhhhHHHHhhhhHHHHHHHHhccc-ccchHHHHHHHHH---HHHh-HHhhchhHHHHHHHHHHHHHHHHHHHHc
Confidence 99886654 35778999999998877653 3334445566652 2232 24555666667777776665555432
Q ss_pred CCCCCCC----C-CChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHh
Q psy6178 580 IKPEKNK----K-SDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCV 654 (912)
Q Consensus 580 ~~~~~~~----~-~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l 654 (912)
+.++... + ......|..+.++.-++... +..+....+...|++.-++.+ +-.+....+|..+....-.
T Consensus 599 ns~d~~s~vDDKqmaasGiL~T~~smiLSlen~----p~vLk~le~slypvi~Filkn--~i~dfy~Ea~dildg~tf~- 671 (970)
T COG5656 599 NSSDTSSVVDDKQMAASGILRTIESMILSLENR----PLVLKYLEVSLYPVISFILKN--EISDFYQEALDILDGYTFM- 671 (970)
T ss_pred CCccccccccHHHHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhhhhHH-
Confidence 1111100 1 11123455666666655532 233445566778888888764 3456677777776554322
Q ss_pred chhhHHhHHHHHHHHHHHH
Q psy6178 655 GKDFAHLLEPLVKQIVVLY 673 (912)
Q Consensus 655 ~~~~~p~l~~l~~~l~~~~ 673 (912)
.++..|..+++.+.+....
T Consensus 672 skeI~pimwgi~Ell~~~l 690 (970)
T COG5656 672 SKEIEPIMWGIFELLLNLL 690 (970)
T ss_pred HHHhhhhhhHHHHHHHhcc
Confidence 3345688888888766543
No 14
>KOG1410|consensus
Probab=99.79 E-value=3.7e-12 Score=136.48 Aligned_cols=752 Identities=13% Similarity=0.164 Sum_probs=398.6
Q ss_pred cHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHH
Q psy6178 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHV 85 (912)
Q Consensus 6 ~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~ 85 (912)
++++++..-..||.+.|+..|.+|++-|.+|..+|++.+-|..|+..++. +..+..|+..|.+.+..+- .+|-+++.
T Consensus 3 sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~--pYs~mlAst~L~Klvs~~t-~lpl~qrl 79 (1082)
T KOG1410|consen 3 SLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSY--PYSQMLASTCLMKLVSRKT-PLPLEQRL 79 (1082)
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHcCCC-CCcHHHHH
Confidence 39999999999999999999999999999999999999999999999887 8899999999998887664 69999999
Q ss_pred HHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhc--c------CcchHHHHHHHHhccc--chHHHHHHHHhhhhhh
Q psy6178 86 SLRDSLIEHLCRTND-TSGKNIITQLALALADLALQM--S------AWEKPVVYIIEKLSHK--GSILALLEVLTVLPEE 154 (912)
Q Consensus 86 ~lk~~Ll~~l~~~~~-~~~~~v~~kl~~~la~l~~~~--~------~W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~ee 154 (912)
.||+.+++++..-.. -+| +|...|++.+|.+-... . ...+++.++...++.+ ++..+.+.+|..|..|
T Consensus 80 dir~Yilnylat~~Pk~~~-fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqe 158 (1082)
T KOG1410|consen 80 DIRNYILNYLATGAPKLAP-FVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQE 158 (1082)
T ss_pred HHHHHHHHHHhcCCCCccc-HHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHH
Confidence 999999999987222 223 89999999988887642 1 2467888888888765 6788999999999999
Q ss_pred cccc--cCChhhHHHHHHHHHhh-hhHHHH----HHHHhhhcCCCC-------hHHHHHHHHHHH---------------
Q psy6178 155 VNVL--KLGKNRREEFEEELKAA-GPIVIE----FLKTCQANCGDN-------VSLQTKVLKCFT--------------- 205 (912)
Q Consensus 155 ~~~~--~~~~~~r~~~~~~l~~~-~~~vl~----~l~~~l~~~~~~-------~~~~~~~l~~l~--------------- 205 (912)
+... ..+..++.++-..++.. .-+|+. +|.......-.+ ..+...+++|+.
T Consensus 159 mN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ 238 (1082)
T KOG1410|consen 159 MNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDL 238 (1082)
T ss_pred hhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccccccc
Confidence 8762 12223333333333332 233333 333322111011 134455667765
Q ss_pred -------hhc-------------------CCcchHHHHHHHHhhchhhhcc---CCchHHHHHHHHHHhchHHHHHHHhc
Q psy6178 206 -------SWS-------------------SGSLHDAATDCVSALLPILEYN---NNFDAVNLNVFTCILSLEEQFHMAVA 256 (912)
Q Consensus 206 -------sWi-------------------~~~l~~~a~~~l~~~l~~~~~~---~~~~~l~~~l~~~v~~l~~~~~~~~~ 256 (912)
+|- ++++.+.|+.|++.+.+-.+.. .+....++.++.++.. .+...-.
T Consensus 239 ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~---il~np~~ 315 (1082)
T KOG1410|consen 239 CTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKR---ILENPQG 315 (1082)
T ss_pred cceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---HHhCCcC
Confidence 222 4556677889988876654432 2345566666665433 3333333
Q ss_pred CCChHHHhhHHHHHHHHHHHHH-HHHHhcccCCCcchhhHHHHHHHhhh----cCCCCcccccCccchhhhhhhHHHHHH
Q psy6178 257 HEDLEKCMNYCKLFTELAESLL-DRIVNESMTKQQPFSIKALDLVLICV----GHHDYEATNLGGLVASITFRLWYRLSE 331 (912)
Q Consensus 257 ~~d~~~~~~~~~l~~~l~~~~~-~~l~~~~~~~~~~~~~~~l~~ll~~~----~~~~~~~~~~~e~vs~~~l~Fw~~l~~ 331 (912)
-.|.+..+.+||++..+-.+|- .-++.-+ . .-..+.++.+.+ .|=++. .+-....+.+|..+..
T Consensus 316 LsD~~nyHeFCRllaRlktNYQL~ELv~v~---~---Y~e~irLiAeFTv~SLq~wefa-----~nSvyyLlt~WqRmva 384 (1082)
T KOG1410|consen 316 LSDPANYHEFCRLLARLKTNYQLGELVKVE---C---YPEVIRLIAEFTVTSLQHWEFA-----PNSVYYLLTLWQRMVA 384 (1082)
T ss_pred CCCcchHHHHHHHHHHHHhhhhhHhhhccC---C---cHHHHHHHHHHHHHHHHhhhcc-----cchhHHHHHHHHHHHh
Confidence 4577777888888776655432 1122211 1 112233333322 222222 1123456789998875
Q ss_pred Hhc--ccCchhhhhcchHHHHH-HHHHHHhhcC--CCCCCCCCccccchHHHHHhHhHHHHHhhhHhcCcH--HH----H
Q psy6178 332 ILY--VKNDDSLTVLFKPHVER-LIGALCKHCQ--LEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSS--TC----F 400 (912)
Q Consensus 332 ~~~--~~~~~~~~~~~~~~~~~-ll~~l~~k~~--~p~d~~~~~ee~~~f~~~R~~~~d~l~~~~~~l~~~--~~----l 400 (912)
... +..++.+.+.|.|-+.+ .+..=++.+. .+++-|...||..... +.-|-+-.++..=-.. .+ +
T Consensus 385 SVPyvk~~~phlLd~y~PeIt~afi~SRl~sV~~ivrd~~d~PLdd~~~~~----q~le~l~~icRceYEkTc~llvq~f 460 (1082)
T KOG1410|consen 385 SVPYVKNTEPHLLDTYCPEITKAFITSRLQSVEIIVRDGLDDPLDDTGAVQ----QQLEQLATICRCEYEKTCALLVQLF 460 (1082)
T ss_pred cCCcccCCChHHHhhhcHHHHHHHHHHHhhhhheecccCCCCcchhhHHHH----HHHHHhhhhhhhhHhhHHHHHHHHH
Confidence 422 11223344444443322 1111112222 1332222112211111 1111121111110000 11 1
Q ss_pred HHHHH----Hhhc---CCCCccchhHHH----HHHHHhhcc-cC---CC-----CcCcHHHHHHHHh----cCCCCchHH
Q psy6178 401 RHMFN----SLHE---NNVMWEQTEAAL----YIMQSVAKN-VL---PE-----ENDVVPKVVEAIL----HLPPSTHIA 456 (912)
Q Consensus 401 ~~l~~----~l~~---~~~~w~~~Ea~L----~~l~~iae~-~~---~~-----~~~~l~~l~~~l~----~~~~~~~~~ 456 (912)
++..+ .++. .+.+-...|+-| |.++++..+ +. .+ +.+...++++.+. ++|...+.+
T Consensus 461 dq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk~t~~Std~~d~mDgEL~arvlql~nlmdsr~~~~~n~r 540 (1082)
T KOG1410|consen 461 DQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGKTTATSTDEHDAMDGELSARVLQLVNLMDSRLPLKGNER 540 (1082)
T ss_pred hhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcceecccccchhhhhhhHHHHHHHHHHHhhhcccchhhhHH
Confidence 11111 1111 122333344443 455544433 11 11 1234445555431 345555677
Q ss_pred HHHHHHHHHHHHHH-HHh------------------c--CcCcHHHHHHHHHHhcCC----CChHHHHHHHHHHHHHHhh
Q psy6178 457 VRYTSLLLLGELCE-WID------------------K--HPHTLETILNFLLHCLQQ----PGLASVTANALQSISTACC 511 (912)
Q Consensus 457 v~~t~~~~lg~y~~-~l~------------------~--~p~~l~~~l~~l~~~l~~----~~v~~~A~~al~~l~~~~~ 511 (912)
+-.+.++++.+|-+ |+. - +...|..++..++..+.- ..+.+..-..|..+.-.-.
T Consensus 541 le~ail~f~eqFRk~YvgDQ~~rsSkvY~rl~e~Lgi~de~~~L~viv~KI~TNLK~w~~~e~vi~~tLslf~dLs~GY~ 620 (1082)
T KOG1410|consen 541 LELAILHFLEQFRKAYVGDQIQRSSKVYARLSEVLGITDESDVLGVIVGKILTNLKYWGRNEPVISLTLSLFNDLSLGYS 620 (1082)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHhhhHH
Confidence 77777777766553 222 1 123455666666655532 3366666666666654422
Q ss_pred h--hhhh--cHHHHHHHHH----Hhhhc--CCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcC
Q psy6178 512 T--HMVG--HFNGLLQIIQ----CLDTL--SIS-NDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQI 580 (912)
Q Consensus 512 ~--~L~~--~~~~ll~~~~----~l~~~--~~~-~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~ 580 (912)
. .|.. ...-+++-.. .+... .+. ...|...+++++.++-.--. +-...+++++.|+.+.++.+++.-+
T Consensus 621 ~~kkL~kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~~d~s-ede~~fe~fm~PLt~~fe~v~~~~~ 699 (1082)
T KOG1410|consen 621 AVKKLVKLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLMVDLS-EDEDMFERFMLPLTDAFEGVLQVFQ 699 (1082)
T ss_pred HHHHHhcchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHhhccc-ccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1211 1111111100 01111 111 22577899999999865322 2234678889999988887776542
Q ss_pred CCCCCCCCChHHHHHHHHHHhhhcCCCcC--CCCCC----hHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHh
Q psy6178 581 KPEKNKKSDPVIWLDRLAAIFKHTSPRIM--SEPHP----CQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCV 654 (912)
Q Consensus 581 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~--~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l 654 (912)
+..- +.+ ..=..+.++.|.++.-.- +..-. +-......+|++....++|.+.+++..-+-++...++..=
T Consensus 700 nn~f--~ee--~vK~~liGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklmaE~v~Nr 775 (1082)
T KOG1410|consen 700 NNCF--EEE--QVKRILIGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLMAELVQNR 775 (1082)
T ss_pred cccc--cHH--HHHHHHHHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHHhhh
Confidence 1110 111 011234445554432110 01111 2234556788888888899998887666555554443321
Q ss_pred ----chhh-HH---hHHHHHHHHHHHH------------------hcCCC-cchHHhHHHHHHHh---cC-ccch-HHHH
Q psy6178 655 ----GKDF-AH---LLEPLVKQIVVLY------------------SKHPH-SSFLYLGSILVDEY---AT-SHCV-SGLL 702 (912)
Q Consensus 655 ----~~~~-~p---~l~~l~~~l~~~~------------------~~~~~-~~~L~~~~~lv~~~---g~-~~~~-~~l~ 702 (912)
.-++ .| ++..=...++..| .-... -||..+-+.+...| |- .-+. ..+.
T Consensus 776 sQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vskdqiY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYGD~~l~ 855 (1082)
T KOG1410|consen 776 SQRLKFDVSSPNGILLFRETSKMVSIYGNRILQLPEVSKDQIYAEKYKGISVCFSILKNALSGNYVNFGVFRLYGDSALD 855 (1082)
T ss_pred HhheecccCCCceeEEehhhhHHHHHHhhHhhcccCcchhhhHHHHhcCceehHHHHHHHhhcCccccceeeeeCchHHH
Confidence 0000 00 1111111111111 11122 34544555554322 21 1111 2344
Q ss_pred HHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCcccc--CchhhHHHHHHHHHhcccCCchhHHHHHHHHH
Q psy6178 703 DMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFL--TSSFISSVMQCGILATHLDHREANSTVMKFFY 780 (912)
Q Consensus 703 ~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l--~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~ 780 (912)
+.+..++.-.+. +.+. ++-+.+-+.++||+|+..+.+.+-..+. ..+.+..++...-.|++.-+.-+..+||.-+.
T Consensus 856 daL~~fvKm~ls-Ip~s-D~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt~v~ssccsslD 933 (1082)
T KOG1410|consen 856 DALQTFVKMLLS-IPHS-DLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRSISSGLTSLDTIVSSSCCSSLD 933 (1082)
T ss_pred HHHHHHHHHHhc-CCHH-HHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHHHHhccchhhHHHHhHHHHHHH
Confidence 444433332211 2222 5557788999999999999887744442 33456666666666777666767778888777
Q ss_pred HHhhcc
Q psy6178 781 DLIHNN 786 (912)
Q Consensus 781 ~li~~~ 786 (912)
.+++..
T Consensus 934 ~i~tYl 939 (1082)
T KOG1410|consen 934 TIVTYL 939 (1082)
T ss_pred HHHHHH
Confidence 777653
No 15
>KOG1993|consensus
Probab=99.64 E-value=1.9e-10 Score=126.29 Aligned_cols=172 Identities=15% Similarity=0.197 Sum_probs=121.8
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccC-----CCCcccH
Q psy6178 10 VYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFF-----ELPSESH 84 (912)
Q Consensus 10 v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~-----~l~~~~~ 84 (912)
|.+.++...+ +|+..++-|++.|++..+.|+-......+..+.++ +..||..|+..+||-|.+.|. .+|+|++
T Consensus 2 vvq~Lq~Ats-~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~-dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK 79 (978)
T KOG1993|consen 2 VVQVLQQATS-QDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTN-DVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEK 79 (978)
T ss_pred HHHHHHHhcC-CCcccchhHHHHHHhhccCCcHHHHHHHHHhcccc-ceeeeeehhhhHhcchhHHhhcCCcccCCHHHH
Confidence 3455666544 58889999999999999999987766666555332 489999999999999999996 6899999
Q ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHh-hcc-CcchHHHHHHHHhccc---chHHHHHHHHhhhhhhccccc
Q psy6178 85 VSLRDSLIEHLCRTNDTSGKNIITQLALALADLAL-QMS-AWEKPVVYIIEKLSHK---GSILALLEVLTVLPEEVNVLK 159 (912)
Q Consensus 85 ~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~-~~~-~W~~~~~~l~~~~~~~---~~~~~~L~iL~~l~ee~~~~~ 159 (912)
..||..++.+... ..+ -+.-|.++.+|.++. .+| +||++++++.+.+++. .......++|-++-.-+..
T Consensus 80 ~~iR~~Ll~~~~E---~~n-QlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~-- 153 (978)
T KOG1993|consen 80 DFIRCNLLLHSDE---ENN-QLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKA-- 153 (978)
T ss_pred HHHHHHHHHhccc---chh-HHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH--
Confidence 9999999988764 334 788899999999997 466 8999999999998765 1122223333322221110
Q ss_pred CChhhHHHHHHHHHhhhhHHHHHHHHhhhc
Q psy6178 160 LGKNRREEFEEELKAAGPIVIEFLKTCQAN 189 (912)
Q Consensus 160 ~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~ 189 (912)
+...|=.+-++.+.+-++.+++++.-.+-+
T Consensus 154 Lat~RL~a~rk~F~el~~~I~~~l~~~l~s 183 (978)
T KOG1993|consen 154 LATKRLLADRKAFYELAPEILTILAPILWS 183 (978)
T ss_pred HHHhHHhhhhHHHHHHhHHHHHHHHHHHhc
Confidence 111222344556777778887766554443
No 16
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.55 E-value=9.6e-13 Score=139.46 Aligned_cols=226 Identities=12% Similarity=0.231 Sum_probs=189.2
Q ss_pred hHHhHHHHHHHHHHHHhcC----CCcchHHhHHHHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHH
Q psy6178 658 FAHLLEPLVKQIVVLYSKH----PHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLF 733 (912)
Q Consensus 658 ~~p~l~~l~~~l~~~~~~~----~~~~~L~~~~~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f 733 (912)
...++||+++.++..|.+. +.+..|.+.+.++.+.|+ ...+.+..+++.+...|+.++.+ ++.+.||+...||
T Consensus 65 ~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~-~~~~~v~~I~~~vf~~Tl~MI~~--d~~~yPe~r~~ff 141 (319)
T PF08767_consen 65 ANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGE-LIQPQVPQILEAVFECTLPMINK--DFEEYPEHRVNFF 141 (319)
T ss_dssp HHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGG-GCCCCHHHHHHHHHHHHHHHHSS--TSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHh--hhhhChHHHHHHH
Confidence 3457888899899999764 567789999999999997 55667888888899999999986 7889999999999
Q ss_pred HHHHHHHHhCCcccc--CchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhhccCCCCcccCccccCCCCchHHHHHHH
Q psy6178 734 RLCTRFLQRAPIAFL--TSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLM 811 (912)
Q Consensus 734 ~l~~~~l~~~p~~~l--~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (912)
.|+..+.++|+..++ +++.+..++++..+|++..+++....+++.+..++....... .+..
T Consensus 142 ~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~-----------------~~~~ 204 (319)
T PF08767_consen 142 KLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTN-----------------PEFA 204 (319)
T ss_dssp HHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-S-----------------HHHH
T ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcC-----------------HHHH
Confidence 999999999998874 677899999999999999999999999999999998765422 3467
Q ss_pred HHHHHHhhHHHHHHHHHHccccCCCcchhhHHHHHHHHHHh----------------ChHHHHHHHHHHHh-cCCCCCCC
Q psy6178 812 KDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISV----------------DRQVSNQWLQDTIS-QLPKNTPA 874 (912)
Q Consensus 812 ~~~~~~~g~~lv~~ll~~~~~~~~~~~~~~~a~vL~~l~~~----------------~~~~~~~wl~~~l~-~~p~~~~~ 874 (912)
+++.+++...++..++..+....+.+.+...+.+|..|.+. +..-..+++.+.|. .+|
T Consensus 205 ~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp----- 279 (319)
T PF08767_consen 205 NQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFP----- 279 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-T-----
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCC-----
Confidence 78888999999999999999999999999999999999963 12236788888777 588
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhh-hhHHHHHHHHHhhc
Q psy6178 875 GMNAATPEQLIEFHSQVTRSESA-YDVGQALKELSRLY 911 (912)
Q Consensus 875 ~~~~~t~~~k~~f~~~l~~~~~~-~~~~~~~~~F~~~c 911 (912)
++++++.+.|++.++...+. .+||.++|||...-
T Consensus 280 ---~l~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFlI~~ 314 (319)
T PF08767_consen 280 ---NLSPKQIENFVQGLFELNNDPEKFKTHLRDFLIQL 314 (319)
T ss_dssp ---TS-HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 68999999999999988874 68999999998754
No 17
>KOG2171|consensus
Probab=99.52 E-value=2.3e-07 Score=107.85 Aligned_cols=606 Identities=13% Similarity=0.099 Sum_probs=322.0
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhcc-CcchHHHHHHHHhc
Q psy6178 58 LEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS-AWEKPVVYIIEKLS 136 (912)
Q Consensus 58 ~~vr~faa~~L~~ki~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~~-~W~~~~~~l~~~~~ 136 (912)
+.||.=-+.++-.--++. +|. .+..|-+.|++...+ ..+ ..|.---..|..+...++ .-...++++...+.
T Consensus 94 ~~vr~k~~dviAeia~~~---l~e-~WPell~~L~q~~~S---~~~-~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~ 165 (1075)
T KOG2171|consen 94 PSVRHKLADVIAEIARND---LPE-KWPELLQFLFQSTKS---PNP-SLRESALLILSSLPETFGNTLQPHLDDLLRLFS 165 (1075)
T ss_pred hHHHHHHHHHHHHHHHhc---ccc-chHHHHHHHHHHhcC---CCc-chhHHHHHHHHhhhhhhccccchhHHHHHHHHH
Confidence 455555444444444433 444 677777777777755 223 344433333344433333 33445555555554
Q ss_pred cc------chHHHHHHHHhhhhhhcccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhcCC
Q psy6178 137 HK------GSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSG 210 (912)
Q Consensus 137 ~~------~~~~~~L~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi~~ 210 (912)
.. ......++.+..+.+...+ .....+.++...|.++..+..+.+... .+....+++++
T Consensus 166 q~~~d~s~~vr~~a~rA~~a~~~~~~~-------~~~~~~~~~~llP~~l~vl~~~i~~~d--~~~a~~~l~~l------ 230 (1075)
T KOG2171|consen 166 QTMTDPSSPVRVAAVRALGAFAEYLEN-------NKSEVDKFRDLLPSLLNVLQEVIQDGD--DDAAKSALEAL------ 230 (1075)
T ss_pred HhccCCcchHHHHHHHHHHHHHHHhcc-------chHHHHHHHHHhHHHHHHhHhhhhccc--hHHHHHHHHHH------
Confidence 32 2233445555555554421 112334566778888888888887643 23334444444
Q ss_pred cchHHHHHHHHhhchhhhccCCchHHHHHHHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCc
Q psy6178 211 SLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQ 290 (912)
Q Consensus 211 ~l~~~a~~~l~~~l~~~~~~~~~~~l~~~l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 290 (912)
.+++... .+++...+..++++.-.+... .+-|....+....+++.+.+.-+......+ .
T Consensus 231 ----------~El~e~~------pk~l~~~l~~ii~~~l~Ia~n-~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~---~- 289 (1075)
T KOG2171|consen 231 ----------IELLESE------PKLLRPHLSQIIQFSLEIAKN-KELENSIRHLALEFLVSLSEYAPAMCKKLA---L- 289 (1075)
T ss_pred ----------HHHHhhc------hHHHHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHhhHHHhhhch---h-
Confidence 3444321 244444444444332222111 223445667777888888888443333332 1
Q ss_pred chhhHHHHHHHhhhc----CCCCcccc-cCcc----chhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcC
Q psy6178 291 PFSIKALDLVLICVG----HHDYEATN-LGGL----VASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQ 361 (912)
Q Consensus 291 ~~~~~~l~~ll~~~~----~~~~~~~~-~~e~----vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~ 361 (912)
.. ..++..++.++. .+++..++ ++|+ -...+..-.-.+.-.+.. ...+.|+ .+.+..++ +
T Consensus 290 ~~-~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g------~~v~p~~-~~~l~~~l---~ 358 (1075)
T KOG2171|consen 290 LG-HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG------KQVLPPL-FEALEAML---Q 358 (1075)
T ss_pred hh-ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh------hhehHHH-HHHHHHHh---c
Confidence 11 134445555442 11111000 1111 111111111112222211 1122222 22222222 1
Q ss_pred CCCCCCCCccccchHHHHHhHhHHHHH----hhhHhcCc--HHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCC
Q psy6178 362 LEPDLEGLLEEDHDFYDFRLKVSELVK----DVVFIVGS--STCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEE 435 (912)
Q Consensus 362 ~p~d~~~~~ee~~~f~~~R~~~~d~l~----~~~~~l~~--~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~ 435 (912)
..+| .+|+..-=.+. -|...+.+ +.+++.+.+.+ .+++-+.+=||+++++.++..+.++-
T Consensus 359 ---S~~w---------~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l--~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 359 ---STEW---------KERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL--NDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred ---CCCH---------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 1223 23433211111 11111111 12333344434 46777888899999999999987753
Q ss_pred cCcHH-HHHHHHhc-CCCCchHHHHHHHHHHHHHHHHHHhcC--cCcHHHHHHHHHHhcCC---CChHHHHHHHHHHHHH
Q psy6178 436 NDVVP-KVVEAILH-LPPSTHIAVRYTSLLLLGELCEWIDKH--PHTLETILNFLLHCLQQ---PGLASVTANALQSIST 508 (912)
Q Consensus 436 ~~~l~-~l~~~l~~-~~~~~~~~v~~t~~~~lg~y~~~l~~~--p~~l~~~l~~l~~~l~~---~~v~~~A~~al~~l~~ 508 (912)
...-. ++...|.. +....+++|..-+.-.+-.+++...+. ..||+.+++..+..+.+ |.++..+..|+.+.+.
T Consensus 425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 22221 22222211 222357899888877777777665433 25788888865555554 3499999999999999
Q ss_pred HhhhhhhhcHHHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCC
Q psy6178 509 ACCTHMVGHFNGLLQIIQCLDTLSIS---NDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKN 585 (912)
Q Consensus 509 ~~~~~L~~~~~~ll~~~~~l~~~~~~---~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~ 585 (912)
.+...+.||.+.+|..+..+.....+ .+-|.+.+|+++.+..++..++..+....+++-....-..... .+
T Consensus 505 AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~----~d-- 578 (1075)
T KOG2171|consen 505 AAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQD----DD-- 578 (1075)
T ss_pred HHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchh----hc--
Confidence 99999999999999999876543221 2246788999999999988777666666665544422111000 11
Q ss_pred CCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhcc------------------------ch----
Q psy6178 586 KKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQ------------------------DA---- 637 (912)
Q Consensus 586 ~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------------------------~~---- 637 (912)
.......+...+.+.+.+++ .+.+++..+||-+....+.-++ +.
T Consensus 579 -d~~~sy~~~~warmc~ilg~-------~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~ 650 (1075)
T KOG2171|consen 579 -DPLRSYMIAFWARMCRILGD-------DFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIG 650 (1075)
T ss_pred -cccHHHHHHHHHHHHHHhch-------hhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeee
Confidence 11122234556667777765 3667777777776655432110 01
Q ss_pred ----hH--HHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCCC----cchHHhHHHHHHHhcC--ccchHHHHHHH
Q psy6178 638 ----RV--MEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPH----SSFLYLGSILVDEYAT--SHCVSGLLDMV 705 (912)
Q Consensus 638 ----~v--~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~~----~~~L~~~~~lv~~~g~--~~~~~~l~~l~ 705 (912)
-+ .+.+|..+......+++.|.||+.++++.++-......| .+++...-.++..... +.+...+..+.
T Consensus 651 I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~ 730 (1075)
T KOG2171|consen 651 IRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLW 730 (1075)
T ss_pred eeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 01 245778888888888999999999999844433332222 1223333233221111 12233677777
Q ss_pred HHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccCc
Q psy6178 706 QAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTS 750 (912)
Q Consensus 706 ~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~ 750 (912)
..++...+..+.. .-.++++.++++=+..+++-+....+..
T Consensus 731 ~~~~~~l~~~l~~----E~e~~vl~~vl~~f~~~i~~~G~~~L~~ 771 (1075)
T KOG2171|consen 731 EAIRPALIKALEE----EPETEVLSEILESFAECIEVMGDNCLNE 771 (1075)
T ss_pred HHHHHHHHHHhhc----CCcHHHHHHHHHHHHHHHHhcCcccCCc
Confidence 7777766666654 2467889999999999998887666543
No 18
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.36 E-value=4.1e-12 Score=120.74 Aligned_cols=106 Identities=26% Similarity=0.478 Sum_probs=93.0
Q ss_pred ChhHHHHHHHHHHHHHhhc-c-CcchHHHHHHHHhccc-chHHHHHHHHhhhhhhccc---ccCChhhHHHHHHHHHhhh
Q psy6178 103 GKNIITQLALALADLALQM-S-AWEKPVVYIIEKLSHK-GSILALLEVLTVLPEEVNV---LKLGKNRREEFEEELKAAG 176 (912)
Q Consensus 103 ~~~v~~kl~~~la~l~~~~-~-~W~~~~~~l~~~~~~~-~~~~~~L~iL~~l~ee~~~---~~~~~~~r~~~~~~l~~~~ 176 (912)
|++|++|+|.+++.++.+. | .||++++++++.++++ .+...+|++|+.++||+.+ .....+||..+++.++.+.
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 4699999999999999986 5 8999999999999886 6788999999999999986 3455778999999999999
Q ss_pred hHHHHHHHHhhhcCCCC--hHHHHHHHHHHHhhc
Q psy6178 177 PIVIEFLKTCQANCGDN--VSLQTKVLKCFTSWS 208 (912)
Q Consensus 177 ~~vl~~l~~~l~~~~~~--~~~~~~~l~~l~sWi 208 (912)
+.|++++.++++..... .++...+++|+.+|+
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i 114 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWI 114 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 99999999999876422 678899999999998
No 19
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.35 E-value=2.6e-07 Score=104.35 Aligned_cols=158 Identities=18% Similarity=0.190 Sum_probs=108.3
Q ss_pred CCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCC-----CCcccHHHHHHHHHHH
Q psy6178 20 NPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFE-----LPSESHVSLRDSLIEH 94 (912)
Q Consensus 20 ~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~-----l~~~~~~~lk~~Ll~~ 94 (912)
++++..++.|++.|++..+.++-......+..+.. .+...|.-|+.-+|+-|.++|.+ +.+++...+|..++..
T Consensus 15 s~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~-~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR~~l~~l 93 (947)
T COG5657 15 SPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAF-NSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIRDELFSL 93 (947)
T ss_pred CCCCchHhhHHHHHHhhhccccHHHHHHHHHhccc-cchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHHHHHHHH
Confidence 45788899999999999999983333333333322 24889999999999999999974 5666777999999999
Q ss_pred HHHhccCCChhHHHHHHHHHHHHHh-hcc-CcchHHHHHHHHhccc--chHHHHHHHHhhhhhhcccccCChhhHHHHHH
Q psy6178 95 LCRTNDTSGKNIITQLALALADLAL-QMS-AWEKPVVYIIEKLSHK--GSILALLEVLTVLPEEVNVLKLGKNRREEFEE 170 (912)
Q Consensus 95 l~~~~~~~~~~v~~kl~~~la~l~~-~~~-~W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~ee~~~~~~~~~~r~~~~~ 170 (912)
+.+ .++ .+.-|.+.+++.++- .+| +||++++++.+.++.. ......+..+..+-.+.... -+.+.
T Consensus 94 ii~---s~n-~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l-------~Rsd~ 162 (947)
T COG5657 94 IIS---SSN-QLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRL-------FRSDA 162 (947)
T ss_pred HHc---ccc-hHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhh-------hccHH
Confidence 876 222 455588889999987 467 8999999999999885 22333444444444433321 12233
Q ss_pred HHHhhhhHHHHHHHHhhhc
Q psy6178 171 ELKAAGPIVIEFLKTCQAN 189 (912)
Q Consensus 171 ~l~~~~~~vl~~l~~~l~~ 189 (912)
.+.+..+.+..++...+-.
T Consensus 163 lf~ei~p~L~~~l~pfl~~ 181 (947)
T COG5657 163 LFLEIAPVLLSILCPFLFS 181 (947)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4445556666665554443
No 20
>KOG1241|consensus
Probab=99.28 E-value=1.2e-06 Score=96.92 Aligned_cols=405 Identities=11% Similarity=0.100 Sum_probs=229.3
Q ss_pred hcchHHHHHHHHHHHhhcCCCCCCCCCccccchHHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhcC-CCCccchhHHH
Q psy6178 343 VLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHEN-NVMWEQTEAAL 421 (912)
Q Consensus 343 ~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee~~~f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~-~~~w~~~Ea~L 421 (912)
...+|+..+.++.+++-|. ++.. |-. |..++.=+| +...+-...+++..++.+.+.+.++ +..-+....+.
T Consensus 398 ~~Lt~iV~qalp~ii~lm~-D~sl-~Vk-dTaAwtlgr-----I~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~C 469 (859)
T KOG1241|consen 398 DKLTPIVIQALPSIINLMS-DPSL-WVK-DTAAWTLGR-----IADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVC 469 (859)
T ss_pred hhhhHHHhhhhHHHHHHhc-Cchh-hhc-chHHHHHHH-----HHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHH
Confidence 4456777888888877775 2211 211 222222222 2222223333433444443333321 23445567778
Q ss_pred HHHHHhhcccCC----C-----CcCcHHHHHHHHhcCCC--C-chHHHHHHHHHHHHHHHHHHhcCcCc-HH---HHHHH
Q psy6178 422 YIMQSVAKNVLP----E-----ENDVVPKVVEAILHLPP--S-THIAVRYTSLLLLGELCEWIDKHPHT-LE---TILNF 485 (912)
Q Consensus 422 ~~l~~iae~~~~----~-----~~~~l~~l~~~l~~~~~--~-~~~~v~~t~~~~lg~y~~~l~~~p~~-l~---~~l~~ 485 (912)
+++..+++.+.+ . .+++.+.++..|+.... + ....+|.++...++..-.+ .|+. .+ .+..+
T Consensus 470 WAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~---st~~vy~~v~~~~l~ 546 (859)
T KOG1241|consen 470 WAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKN---STDDVYPMVQKLTLV 546 (859)
T ss_pred HHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc---CcHHHHHHHHHHHHH
Confidence 888888876532 1 12355566666655432 2 3457888888888765543 3432 22 22222
Q ss_pred HHH----hcC-------C----CChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHh
Q psy6178 486 LLH----CLQ-------Q----PGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVS 550 (912)
Q Consensus 486 l~~----~l~-------~----~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~ 550 (912)
+.. .++ + .++++.-|..|..+.+...+...+..+.+|..+..+.+..-+.-..+.++-+++..+.
T Consensus 547 il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~ 626 (859)
T KOG1241|consen 547 ILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAE 626 (859)
T ss_pred HHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHH
Confidence 222 222 1 1377777888888888877777888899998877655432333356778888888888
Q ss_pred cCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHH
Q psy6178 551 DMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTC 630 (912)
Q Consensus 551 ~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 630 (912)
.+. .....|+..+..-+...|+.... .......++.+|-++|+++. -+.++...+|..+.+.+
T Consensus 627 ~Lg-~~F~kym~~f~pyL~~gL~n~~e---------~qVc~~aVglVgdl~raL~~-------~i~py~d~~mt~Lvq~L 689 (859)
T KOG1241|consen 627 SLG-KGFAKYMPAFKPYLLMGLSNFQE---------YQVCAAAVGLVGDLARALED-------DILPYCDELMTVLVQCL 689 (859)
T ss_pred HHh-HhHHHHHHHHHHHHHHHhhcchH---------HHHHHHHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHc
Confidence 875 34555555543333333322211 22345578889999999875 46788899998888887
Q ss_pred HhhccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCCCc------chH--------HhHHHHHHHhcCcc
Q psy6178 631 ETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHS------SFL--------YLGSILVDEYATSH 696 (912)
Q Consensus 631 ~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~~~------~~L--------~~~~~lv~~~g~~~ 696 (912)
+.-.-+-.|.-.+..+|+.+...+|.+|.||+..++..+.+.-+....+ .|. ...+-++..+|. .
T Consensus 690 ss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~-~ 768 (859)
T KOG1241|consen 690 SSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKT-H 768 (859)
T ss_pred cCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhc-c
Confidence 7644455667778999999999999999999999988776554222111 222 222223333332 0
Q ss_pred chHHHHHHHHHHhHHHHHhhcCcCCCCCCCc-hHHHHHHHHHHHHHhCCcccc----CchhhHHHHHHHHHhcccCCchh
Q psy6178 697 CVSGLLDMVQAFLPPTYAILQEEDGLKNHPD-TVDDLFRLCTRFLQRAPIAFL----TSSFISSVMQCGILATHLDHREA 771 (912)
Q Consensus 697 ~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd-~~~~~f~l~~~~l~~~p~~~l----~~~~l~~i~~~~~~~l~~~~~~~ 771 (912)
.. ..++.+...++++++.+.....+..| +..+-.+++..+...+|..+. ..+.+..++.-+..+-+...++.
T Consensus 769 ~~---~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~ 845 (859)
T KOG1241|consen 769 AD---VMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDL 845 (859)
T ss_pred cc---hhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHHH
Confidence 00 02333455666666654311112212 456778999999988885543 33445555544433333333444
Q ss_pred HHHHHHHH
Q psy6178 772 NSTVMKFF 779 (912)
Q Consensus 772 ~~~~~~fl 779 (912)
++.|.+-+
T Consensus 846 A~wa~e~i 853 (859)
T KOG1241|consen 846 ARWATEEI 853 (859)
T ss_pred HHHHHHHH
Confidence 44444433
No 21
>KOG1824|consensus
Probab=99.10 E-value=6.8e-05 Score=85.22 Aligned_cols=188 Identities=13% Similarity=0.096 Sum_probs=107.5
Q ss_pred cHHHHHHHHHHhc----CCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHH-hhhcCCChHHHHHHHHHHHHHHh
Q psy6178 478 TLETILNFLLHCL----QQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQC-LDTLSISNDAAIGLLKGVAIIVS 550 (912)
Q Consensus 478 ~l~~~l~~l~~~l----~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~-l~~~~~~~~~~~~l~eai~~vi~ 550 (912)
+|.....++++.+ ++.. .+..+-.-+..+....+..+.++++.++..+.. +.+..-+..-+...+--+..++.
T Consensus 428 ~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~ 507 (1233)
T KOG1824|consen 428 MLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALI 507 (1233)
T ss_pred HHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHh
Confidence 4445555555444 3333 344566677777777888888888888776653 33331111112222223333344
Q ss_pred cCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHH
Q psy6178 551 DMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTC 630 (912)
Q Consensus 551 ~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 630 (912)
.-|++...+.+..+..|+.... ... ........|-....+++.+.+..++..-.+.+++..+.....+-+
T Consensus 508 s~~p~~fhp~~~~Ls~~v~~aV----~d~------fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL 577 (1233)
T KOG1824|consen 508 SHPPEVFHPHLSALSPPVVAAV----GDP------FYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRL 577 (1233)
T ss_pred cCChhhcccchhhhhhHHHHHh----cCc------hHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHH
Confidence 4566666667666666655322 111 111112345455555555554322111112345566666656656
Q ss_pred HhhccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhc
Q psy6178 631 ETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSK 675 (912)
Q Consensus 631 ~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~ 675 (912)
+.--.|.+|.|++..|.+..+..+|......+|..+..+.....+
T Consensus 578 ~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n 622 (1233)
T KOG1824|consen 578 KATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN 622 (1233)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc
Confidence 655678999999999999999999977777888877777665543
No 22
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.93 E-value=0.00016 Score=77.77 Aligned_cols=373 Identities=11% Similarity=0.097 Sum_probs=203.0
Q ss_pred hcchHHHHHHHHHHHhhcCCCCCCC-CCccccc--hHHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhc-----CCCCc
Q psy6178 343 VLFKPHVERLIGALCKHCQLEPDLE-GLLEEDH--DFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHE-----NNVMW 414 (912)
Q Consensus 343 ~~~~~~~~~ll~~l~~k~~~p~d~~-~~~ee~~--~f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~-----~~~~w 414 (912)
....++..+.++.+...|. |.- |-. +.. .|...-..+.+.+.-+.++.+. .+.....+.. .+.+|
T Consensus 400 ~~lT~~V~qalp~i~n~m~---D~~l~vk-~ttAwc~g~iad~va~~i~p~~Hl~~~---vsa~liGl~D~p~~~~ncsw 472 (858)
T COG5215 400 DCLTKIVPQALPGIENEMS---DSCLWVK-STTAWCFGAIADHVAMIISPCGHLVLE---VSASLIGLMDCPFRSINCSW 472 (858)
T ss_pred HHHHhhHHhhhHHHHHhcc---cceeehh-hHHHHHHHHHHHHHHHhcCccccccHH---HHHHHhhhhccchHHhhhHH
Confidence 3445667777777777664 221 221 222 2333333344444444444331 2233333332 23456
Q ss_pred cchhHHHHHHHHhhcccCCCC---cCcHHHHHHHHhcCCC--CchHHHHHHHHHHHHHHHHHHhcC-cCcHHHHHHHHHH
Q psy6178 415 EQTEAALYIMQSVAKNVLPEE---NDVVPKVVEAILHLPP--STHIAVRYTSLLLLGELCEWIDKH-PHTLETILNFLLH 488 (912)
Q Consensus 415 ~~~Ea~L~~l~~iae~~~~~~---~~~l~~l~~~l~~~~~--~~~~~v~~t~~~~lg~y~~~l~~~-p~~l~~~l~~l~~ 488 (912)
+..- ....+++.....+ ..+-+.++..|..... ....-.|.+.+..+|....+-... .+.+..+..|+..
T Consensus 473 ~~~n----lv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~ 548 (858)
T COG5215 473 RKEN----LVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSK 548 (858)
T ss_pred HHHh----HHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 5321 1223333332211 1223344444433221 123456666677777665543211 1233333444433
Q ss_pred hcC-----------------CCChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhc
Q psy6178 489 CLQ-----------------QPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSD 551 (912)
Q Consensus 489 ~l~-----------------~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~ 551 (912)
.+. ..++++.-+.-+..+.+..+..+-+.-+++|+.+..+....-+.-....++.+|+.+..+
T Consensus 549 kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~s 628 (858)
T COG5215 549 KLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTS 628 (858)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHH
Confidence 322 123666777777777777777777888888888776554322333456788888888777
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHH
Q psy6178 552 MPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCE 631 (912)
Q Consensus 552 ~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 631 (912)
+. +....|...++.-+. +.++.. + +......+..+|.+.++++. .+.++...+|..+.+.++
T Consensus 629 l~-e~Fe~y~~~fiPyl~----~aln~~---d---~~v~~~avglvgdlantl~~-------df~~y~d~~ms~LvQ~ls 690 (858)
T COG5215 629 LE-ERFEQYASKFIPYLT----RALNCT---D---RFVLNSAVGLVGDLANTLGT-------DFNIYADVLMSSLVQCLS 690 (858)
T ss_pred HH-HHHHHHHhhhhHHHH----HHhcch---h---HHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHhc
Confidence 63 445555555433222 222211 1 12233467788888888875 356778888888888887
Q ss_pred hhccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCCCcchHHhHH-------HHHHHhcCccchHHHHHH
Q psy6178 632 TYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGS-------ILVDEYATSHCVSGLLDM 704 (912)
Q Consensus 632 ~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~L~~~~-------~lv~~~g~~~~~~~l~~l 704 (912)
.-..+-++.-++..+|+.+...+|..|.|||..++-.+.+.-+..|++.-++... .+.+.|- .+.+..++-
T Consensus 691 s~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayV--gI~~~~~nr 768 (858)
T COG5215 691 SEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYV--GIGDSSKNR 768 (858)
T ss_pred ChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHH--Hhhhhhhhh
Confidence 6556677788889999999999999999999999987777766667765444311 1112221 111122221
Q ss_pred HHHHhH---HHHHhhcCc-CCCCCCCchHHHHHHHHHHHHHhCCcc
Q psy6178 705 VQAFLP---PTYAILQEE-DGLKNHPDTVDDLFRLCTRFLQRAPIA 746 (912)
Q Consensus 705 ~~~l~~---~~~~~l~~~-~~~~~~pd~~~~~f~l~~~~l~~~p~~ 746 (912)
+..+.. .+|..+... .++....+..++-.+|+..+...+|+.
T Consensus 769 ~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkg 814 (858)
T COG5215 769 VRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKG 814 (858)
T ss_pred HHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCc
Confidence 222222 233333311 122222345678899999999999976
No 23
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.85 E-value=5.9e-09 Score=86.08 Aligned_cols=67 Identities=22% Similarity=0.332 Sum_probs=61.6
Q ss_pred HHHHHHHhhcC-hhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccC--------CCCcccHHHHHHHHHHHHH
Q psy6178 29 ASQWLHQLQKS-IYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFF--------ELPSESHVSLRDSLIEHLC 96 (912)
Q Consensus 29 A~~~L~~~q~s-~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~--------~l~~~~~~~lk~~Ll~~l~ 96 (912)
|+++|++++++ |+.|..+.+++.+.+ .+.++|+||+++||++|+++|. .+|++++..||+.|++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~-~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNS-QDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 79999999999 899999999996644 3599999999999999999999 9999999999999999874
No 24
>KOG2023|consensus
Probab=98.85 E-value=3.6e-05 Score=84.16 Aligned_cols=213 Identities=18% Similarity=0.247 Sum_probs=137.3
Q ss_pred cCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH-HHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhh-
Q psy6178 436 NDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCE-WIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSISTACC- 511 (912)
Q Consensus 436 ~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~-~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~- 511 (912)
++.++.+++.|........-.+|.+++..+|..++ .++.--++|+.+++++++.|.++. |++-+|++|.++..-..
T Consensus 388 ~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~ 467 (885)
T KOG2023|consen 388 DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQ 467 (885)
T ss_pred HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhc
Confidence 44566677776554444566899999999999998 444446789999999999999854 99999999999875422
Q ss_pred ----hhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCC
Q psy6178 512 ----THMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKK 587 (912)
Q Consensus 512 ----~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~ 587 (912)
..+.|.+.+++.. +.+. .-..++..+.|.+.+..... ++..+++..+++.++-.++..-.++
T Consensus 468 ~~~~~~f~pvL~~ll~~---llD~--NK~VQEAAcsAfAtleE~A~-~eLVp~l~~IL~~l~~af~kYQ~KN-------- 533 (885)
T KOG2023|consen 468 DSRDEYFKPVLEGLLRR---LLDS--NKKVQEAACSAFATLEEEAG-EELVPYLEYILDQLVFAFGKYQKKN-------- 533 (885)
T ss_pred CChHhhhHHHHHHHHHH---Hhcc--cHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHhhcc--------
Confidence 2333443333333 3322 22356667777666655433 4556666666666665555543222
Q ss_pred CChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHhchhhHHhHHHHH
Q psy6178 588 SDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQ-DARVMEHSSRCLRYAIRCVGKDFAHLLEPLV 666 (912)
Q Consensus 588 ~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~ 666 (912)
+....+.+|+++.+++... .+| .+++-+||-+.+-.+..++ |.++ =-..+|+..+...+|..|.||.+++.
T Consensus 534 --LlILYDAIgtlAdsvg~~L---n~~--~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy 605 (885)
T KOG2023|consen 534 --LLILYDAIGTLADSVGHAL---NKP--AYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVY 605 (885)
T ss_pred --eehHHHHHHHHHHHHHHhc---CcH--HHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHH
Confidence 2234567777777765432 133 3578888876665555443 4444 34567888888889999999988877
Q ss_pred HHHH
Q psy6178 667 KQIV 670 (912)
Q Consensus 667 ~~l~ 670 (912)
+...
T Consensus 606 ~Rc~ 609 (885)
T KOG2023|consen 606 QRCF 609 (885)
T ss_pred HHHH
Confidence 5433
No 25
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=98.63 E-value=1.2e-06 Score=94.50 Aligned_cols=191 Identities=17% Similarity=0.247 Sum_probs=114.3
Q ss_pred HHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcc--hHHHHHHHH-HHHhhcCCCCC-CC---CC
Q psy6178 297 LDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLF--KPHVERLIG-ALCKHCQLEPD-LE---GL 369 (912)
Q Consensus 297 l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~--~~~~~~ll~-~l~~k~~~p~d-~~---~~ 369 (912)
.+++......+.+| .+...++.|...+.+... ....| +|++.++++ ++++.|.+.++ ++ +|
T Consensus 143 w~lL~~~~~~~~~D------~lv~~al~FL~~v~~~~~------~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEdd 210 (370)
T PF08506_consen 143 WNLLTKISQQPKYD------ILVSKALQFLSSVAESPH------HKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDD 210 (370)
T ss_dssp HHHHTC--SSGGGH------HHHHHHHHHHHHHHTSHH------HHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHS
T ss_pred HHHHHHhhhccccc------HHHHHHHHHHHHHHcchh------HHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccC
Confidence 34444444444555 377788999877654321 11233 567777775 56777877443 22 12
Q ss_pred c-------cccchHHHHHhHhHHHHHhhhHhcCcHHHHHH----HHHHhh----cCCCCccchhHHHHHHHHhhcccCCC
Q psy6178 370 L-------EEDHDFYDFRLKVSELVKDVVFIVGSSTCFRH----MFNSLH----ENNVMWEQTEAALYIMQSVAKNVLPE 434 (912)
Q Consensus 370 ~-------ee~~~f~~~R~~~~d~l~~~~~~l~~~~~l~~----l~~~l~----~~~~~w~~~Ea~L~~l~~iae~~~~~ 434 (912)
+ -|..|+...|+.+.|+++.++...+.. +... +...+. +++.+|+..++|++.+++++......
T Consensus 211 P~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~-v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~ 289 (370)
T PF08506_consen 211 PEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQ-VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTT 289 (370)
T ss_dssp HHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--B
T ss_pred HHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccc
Confidence 1 123567788889999999888765543 2222 222222 25678999999999999999876321
Q ss_pred C------cCc--HHHHHH-----HHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHH
Q psy6178 435 E------NDV--VPKVVE-----AILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVT 499 (912)
Q Consensus 435 ~------~~~--l~~l~~-----~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A 499 (912)
. ++. +..++. -|. -..+.+|.++..+|+++..|...+. ++.+..+++.++..|++++ |...|
T Consensus 290 ~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~--~~~l~~~~~~l~~~L~~~~~vv~tyA 366 (370)
T PF08506_consen 290 KSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP--KEQLLQIFPLLVNHLQSSSYVVHTYA 366 (370)
T ss_dssp TTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---HHHHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred cCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHHhCCCCcchhhhh
Confidence 1 111 233333 232 1124689999999999998887653 5789999999999999987 77778
Q ss_pred HHHH
Q psy6178 500 ANAL 503 (912)
Q Consensus 500 ~~al 503 (912)
|.|+
T Consensus 367 A~~i 370 (370)
T PF08506_consen 367 AIAI 370 (370)
T ss_dssp HHHH
T ss_pred hhhC
Confidence 8764
No 26
>KOG0915|consensus
Probab=98.42 E-value=0.0021 Score=77.38 Aligned_cols=328 Identities=15% Similarity=0.189 Sum_probs=185.7
Q ss_pred HHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCCCCCccccchH
Q psy6178 297 LDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDF 376 (912)
Q Consensus 297 l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee~~~f 376 (912)
+--.+++++|..... .=...+|.|=.-..+ ..+...|++.+|++-+++ .+|+||.
T Consensus 958 VYKFM~LAnh~A~wn-----Sk~GaAfGf~~i~~~---------a~~kl~p~l~kLIPrLyR-Y~yDP~~---------- 1012 (1702)
T KOG0915|consen 958 VYKFMQLANHNATWN-----SKKGAAFGFGAIAKQ---------AGEKLEPYLKKLIPRLYR-YQYDPDK---------- 1012 (1702)
T ss_pred HHHHHHHhhhhchhh-----cccchhhchHHHHHH---------HHHhhhhHHHHhhHHHhh-hccCCcH----------
Confidence 333455666665441 123356666322222 235667899988887763 4676653
Q ss_pred HHHHhHhHHHHHhhhHhcCc------HHHHHHHHHHhhc--CCCCccchhHHHHHHHHhhcccCCC-CcCcHHHHHHHHh
Q psy6178 377 YDFRLKVSELVKDVVFIVGS------STCFRHMFNSLHE--NNVMWEQTEAALYIMQSVAKNVLPE-ENDVVPKVVEAIL 447 (912)
Q Consensus 377 ~~~R~~~~d~l~~~~~~l~~------~~~l~~l~~~l~~--~~~~w~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~ 447 (912)
.+.+.+.++...+=. +.++..++..|.. .+..||.+||+..++.-+-.+=+.+ ..+.++++...+.
T Consensus 1013 -----~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~f 1087 (1702)
T KOG0915|consen 1013 -----KVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAF 1087 (1702)
T ss_pred -----HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 233334444332211 1244444333322 5678999999999999888874322 2356777777766
Q ss_pred cCCCCchHHHHHHH---HHHHHHHHHHHhc--Cc----CcHHHHHHHHHH-hcCC--CChHHHHHHHHHHHHHHhhhhhh
Q psy6178 448 HLPPSTHIAVRYTS---LLLLGELCEWIDK--HP----HTLETILNFLLH-CLQQ--PGLASVTANALQSISTACCTHMV 515 (912)
Q Consensus 448 ~~~~~~~~~v~~t~---~~~lg~y~~~l~~--~p----~~l~~~l~~l~~-~l~~--~~v~~~A~~al~~l~~~~~~~L~ 515 (912)
+.-.|.+.-||.++ +.+++..+--+.. |+ +.+..+|++++. |+.+ ++++..+-..+.++.+.....|.
T Consensus 1088 RvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lk 1167 (1702)
T KOG0915|consen 1088 RVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELK 1167 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhc
Confidence 65555667777766 4555555543332 33 578888998884 4443 46999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHH
Q psy6178 516 GHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLD 595 (912)
Q Consensus 516 ~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 595 (912)
||++.++-.+....+. +.+.. +.++...+ .++..+.+.. ++.-+. +.. ..++
T Consensus 1168 P~~~~LIp~ll~~~s~-lE~~v-------LnYls~r~-~~~e~ealDt--------~R~s~a---------kss--pmme 1219 (1702)
T KOG0915|consen 1168 PHFPKLIPLLLNAYSE-LEPQV-------LNYLSLRL-INIETEALDT--------LRASAA---------KSS--PMME 1219 (1702)
T ss_pred chhhHHHHHHHHHccc-cchHH-------HHHHHHhh-hhhHHHHHHH--------HHHhhh---------cCC--cHHH
Confidence 9999988777665543 22211 11111111 1111111111 111000 111 1345
Q ss_pred HHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHh
Q psy6178 596 RLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQ-DARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYS 674 (912)
Q Consensus 596 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~ 674 (912)
.+..+.++++ ..+++++.|.+.+++..-.+ .. .-.+..++.-.+..+|.++.||...++..+..++.
T Consensus 1220 Ti~~ci~~iD----------~~vLeelip~l~el~R~sVgl~T--kvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~ 1287 (1702)
T KOG0915|consen 1220 TINKCINYID----------ISVLEELIPRLTELVRGSVGLGT--KVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAK 1287 (1702)
T ss_pred HHHHHHHhhh----------HHHHHHHHHHHHHHHhccCCCCc--chhHHHHHHHHHHHhccccCcchhHHHHHHhhccc
Confidence 5666655554 34677888887777664211 11 11122333333444899999999999999888887
Q ss_pred cCCCcchHHhHHHHHHHhcC
Q psy6178 675 KHPHSSFLYLGSILVDEYAT 694 (912)
Q Consensus 675 ~~~~~~~L~~~~~lv~~~g~ 694 (912)
....+.--.+++.+-..++-
T Consensus 1288 dRNesv~kafAsAmG~L~k~ 1307 (1702)
T KOG0915|consen 1288 DRNESVRKAFASAMGYLAKF 1307 (1702)
T ss_pred cccHHHHHHHHHHHHHHHhc
Confidence 64444444455555444443
No 27
>KOG1242|consensus
Probab=98.37 E-value=2.7e-05 Score=85.51 Aligned_cols=194 Identities=14% Similarity=0.208 Sum_probs=132.0
Q ss_pred hcchHHHHHHHHHHHhhcCCCCCCCCCccccchHHHHHhHh---HHHHHhhhHhcCcHHHHHHHHHHhhcCCCCccchhH
Q psy6178 343 VLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKV---SELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEA 419 (912)
Q Consensus 343 ~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee~~~f~~~R~~~---~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~w~~~Ea 419 (912)
..+.|++..+++.++.+.- | .-...|... ...++++....+...++..+...+... .||...+
T Consensus 208 ~~~EPyiv~~lp~il~~~~---d---------~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~--kWrtK~a 273 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFG---D---------KINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA--KWRTKMA 273 (569)
T ss_pred CCCCchHHhhHHHHHHHhh---c---------cchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH--hhhhHHH
Confidence 4456777777777776652 1 111233333 334455555555555666666656433 8999999
Q ss_pred HHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC-----
Q psy6178 420 ALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG----- 494 (912)
Q Consensus 420 ~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~----- 494 (912)
++..++++++..+..-+..++.+++.+.....+.||.||.++..++-+|+..+. +|+ +.+.++.++.++.+|.
T Consensus 274 slellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid-N~d-I~~~ip~Lld~l~dp~~~~~e 351 (569)
T KOG1242|consen 274 SLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID-NPD-IQKIIPTLLDALADPSCYTPE 351 (569)
T ss_pred HHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc-cHH-HHHHHHHHHHHhcCcccchHH
Confidence 999999999987765566777888777666667899999999999999999875 344 5555555555555432
Q ss_pred ------------------------------------hHHHHHHHHHHHHHHh--hhhhhhcHHHHHHHHHHhhhcCCChH
Q psy6178 495 ------------------------------------LASVTANALQSISTAC--CTHMVGHFNGLLQIIQCLDTLSISND 536 (912)
Q Consensus 495 ------------------------------------v~~~A~~al~~l~~~~--~~~L~~~~~~ll~~~~~l~~~~~~~~ 536 (912)
..+.++..+.+.|..- ...+.||++.|+..+....... -++
T Consensus 352 ~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~-~PE 430 (569)
T KOG1242|consen 352 CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA-VPE 430 (569)
T ss_pred HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-Chh
Confidence 3355666666666665 4568889998888887544322 467
Q ss_pred HHHHHHHHHHHHHhcCC
Q psy6178 537 AAIGLLKGVAIIVSDMP 553 (912)
Q Consensus 537 ~~~~l~eai~~vi~~~p 553 (912)
.|.....++|.++..+.
T Consensus 431 vR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 431 VRAVAARALGALLERLG 447 (569)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888888877664
No 28
>KOG4541|consensus
Probab=98.30 E-value=0.001 Score=71.48 Aligned_cols=375 Identities=13% Similarity=0.075 Sum_probs=196.4
Q ss_pred hHHHHHHHHHHHHHHh-hhhhhhcHHHHHHHHHHhhhcC-----CChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHH
Q psy6178 495 LASVTANALQSISTAC-CTHMVGHFNGLLQIIQCLDTLS-----ISNDAAIGLLKGVAIIVSDMP-QDQISEALKQLCLV 567 (912)
Q Consensus 495 v~~~A~~al~~l~~~~-~~~L~~~~~~ll~~~~~l~~~~-----~~~~~~~~l~eai~~vi~~~p-~~~~~~~l~~l~~p 567 (912)
+..-|..++-.+.+.. +..++...+++++..+...+.. .+...++.+|.++...-.+.. .+...++....+.|
T Consensus 313 L~~Da~q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa~~d~e~~~n~~~~~Lqp 392 (748)
T KOG4541|consen 313 LVPDALQSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFAYLDLEEECNLGSNKLQP 392 (748)
T ss_pred hhHHHHHHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc
Confidence 4445555555555552 2334444444554444433321 245568889988877654433 36678899999999
Q ss_pred hHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHH---hhccchhHHHHHH
Q psy6178 568 QVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCE---TYQQDARVMEHSS 644 (912)
Q Consensus 568 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~v~e~~~ 644 (912)
+-+++-...++.+ ..+...+++..|++++.+...- +.|.....++-++-.+....+ .+...++++..+.
T Consensus 393 L~~Rf~~~~nq~~--q~~~~~~Ii~~l~~~~g~a~a~------q~d~~~~Lf~fL~~~~~~c~glm~s~~~~~~~v~~i~ 464 (748)
T KOG4541|consen 393 LPSRFFTYFNQHN--QGKFVLDIIVRLSLTSGTAYAG------QKDLQRSLFQFLVLSAYGCRGLMASNQYVKDLVAHIT 464 (748)
T ss_pred cHHHHHHHhcccc--hhhHHHHHHHHHHHhccccccc------cchhHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHH
Confidence 9999988887652 1222345555666666554432 234444445554444443322 2444555555555
Q ss_pred HHHHHHHHH----hc-hhhHHhHHHHHHHHHHHHhcCCC-----------------cchHHhHHHHH-HHhcC---ccch
Q psy6178 645 RCLRYAIRC----VG-KDFAHLLEPLVKQIVVLYSKHPH-----------------SSFLYLGSILV-DEYAT---SHCV 698 (912)
Q Consensus 645 ~~~~~~~~~----l~-~~~~p~l~~l~~~l~~~~~~~~~-----------------~~~L~~~~~lv-~~~g~---~~~~ 698 (912)
..+-..... .+ ++..-.+-.-+-++...|.+... .-++.+++... ..|-+ +.+.
T Consensus 465 ~~~vdvs~k~~~y~~~e~~~~~ly~sclql~~~y~~~~~~r~rt~~a~~Ee~~sdl~lvl~lL~n~lskdF~~~s~e~~~ 544 (748)
T KOG4541|consen 465 SSLVDVSNKSDLYNLAEQPDIILYVSCLQLERLYGAASATRPRTQRAIYEEGLSDLNLVLRLLENYLSKDFSSDSIETQS 544 (748)
T ss_pred HHHHHhhhhhhhhccccChhHHHHHHHHHHHHHhhhhcccCcchHHHHHHhhhhHHHHHHHHHHHHhhhhhhcccccccc
Confidence 444322111 11 11111111111122222322111 11122222211 11111 1100
Q ss_pred H-HHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCcccc--CchhhHHHHHHHHHhccc-CCchhHHH
Q psy6178 699 S-GLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFL--TSSFISSVMQCGILATHL-DHREANST 774 (912)
Q Consensus 699 ~-~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l--~~~~l~~i~~~~~~~l~~-~~~~~~~~ 774 (912)
. +..+++--=..-++.+++. ..-..|.+.-+||+++.-+....|+.+- +..++....+|.-.|++. .+...+.+
T Consensus 545 ~~G~a~VV~~gl~~ilplm~~--~lLk~P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMTge~~s~~l~~ 622 (748)
T KOG4541|consen 545 TNGIAQVVYFGLHIILPLMTL--ELLKYPKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMTGESHSAGLHT 622 (748)
T ss_pred ccCcceEEEeeHHHHHHHHHH--HHHhchHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCccccchHhhcc
Confidence 0 0000000000011222222 2345799999999999999999998874 445677788877666663 34444455
Q ss_pred HHHHHHHHhhccCCCCcccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccc-cCCCcchhhHHHHHHHHHHhC
Q psy6178 775 VMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVF-SLHTYMMADVADVLYELISVD 853 (912)
Q Consensus 775 ~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~-~~~~~~~~~~a~vL~~l~~~~ 853 (912)
..+-+..|-+...+.. . .. . . .++.+ .+++.+|.-+.. ....+.....++.|+.|+...
T Consensus 623 ~~e~v~hfgspankgr-----c------Tq-n-l----afL~~---efL~tvf~~ll~~~~~t~l~s~a~~Aly~LI~~e 682 (748)
T KOG4541|consen 623 DPEGVFHFGSPANKGR-----C------TQ-N-L----AFLSR---EFLRTVFHFLLFEDYSTDLVSTAADALYPLILCE 682 (748)
T ss_pred ChHhhhcccccccccc-----c------cc-c-H----HHHHH---HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhC
Confidence 5555555544443321 0 00 0 0 11111 334445555554 345678899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHhhhh----------hh-hhHHHHHHHHHh
Q psy6178 854 RQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSE----------SA-YDVGQALKELSR 909 (912)
Q Consensus 854 ~~~~~~wl~~~l~~~p~~~~~~~~~~t~~~k~~f~~~l~~~~----------~~-~~~~~~~~~F~~ 909 (912)
|..+.+...+.++. +.+|.-|+++-++..... .+ -+||.-+.+|..
T Consensus 683 ~~~y~elvneL~sk----------q~np~~~qrLa~Af~~Lt~sn~~psldR~~~~~Frk~le~Fl~ 739 (748)
T KOG4541|consen 683 PNLYQELVNELISK----------QANPNFKQRLANAFQVLTTSNQLPSLDRLNYQRFRKNLENFLV 739 (748)
T ss_pred HHHHHHHHHHHHhh----------ccChHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHH
Confidence 99999988877552 467888888877766431 12 379998888864
No 29
>KOG1824|consensus
Probab=98.16 E-value=0.032 Score=64.47 Aligned_cols=160 Identities=11% Similarity=0.092 Sum_probs=106.4
Q ss_pred CCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcC--------cCcHHHHH
Q psy6178 412 VMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKH--------PHTLETIL 483 (912)
Q Consensus 412 ~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~--------p~~l~~~l 483 (912)
.+-..+|+-.|....++..-++.-.++++.+...+...-.++-+.+.+-++.+.++|.+.+..- +.+..+++
T Consensus 491 ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~ 570 (1233)
T KOG1824|consen 491 SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMY 570 (1233)
T ss_pred hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHH
Confidence 3445678888888888776544445566666554433223457889999999999999988642 24667777
Q ss_pred HHHHHhcC----CCChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHH-HhhhcCCChHHHHHHHHHHHHHHhcCCHHHHH
Q psy6178 484 NFLLHCLQ----QPGLASVTANALQSISTACCTHMVGHFNGLLQIIQ-CLDTLSISNDAAIGLLKGVAIIVSDMPQDQIS 558 (912)
Q Consensus 484 ~~l~~~l~----~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~-~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~ 558 (912)
...++.+. |.+|+.+|..++..+.....+.+..+++..+..+. .+.+. ..|...+.|++.|+.+.-.=...
T Consensus 571 ~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE----iTRl~AvkAlt~Ia~S~l~i~l~ 646 (1233)
T KOG1824|consen 571 DCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE----ITRLTAVKALTLIAMSPLDIDLS 646 (1233)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch----hHHHHHHHHHHHHHhccceeehh
Confidence 76666654 35699999999999998888888888888777664 33331 25888899999887653211233
Q ss_pred HHHHHHHHHhHHHHHHH
Q psy6178 559 EALKQLCLVQVKPLCEL 575 (912)
Q Consensus 559 ~~l~~l~~p~~~~l~~~ 575 (912)
+.+..++.-+.+.+.+.
T Consensus 647 ~~l~~il~~l~~flrK~ 663 (1233)
T KOG1824|consen 647 PVLTEILPELASFLRKN 663 (1233)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.88 E-value=0.11 Score=60.87 Aligned_cols=439 Identities=16% Similarity=0.133 Sum_probs=215.2
Q ss_pred cCCChhhHHHHHHHHHHhhcC-hhHHHHH-HHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHH
Q psy6178 19 LNPNKTEKEKASQWLHQLQKS-IYAWKIA-DEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLC 96 (912)
Q Consensus 19 ~~~~~~~~~~A~~~L~~~q~s-~~aw~~~-~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~~lk~~Ll~~l~ 96 (912)
.++|...|+-+.=++..+... |+...++ ..+...-.+.++.+|-.|..++-+-. +++..+.+-..+.+.+.
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll~ 124 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLLS 124 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHhc
Confidence 356888899999998877764 4434433 33333322223788888888887633 23444555555555554
Q ss_pred HhccCCChhHHHHHHHHHHHHHhhccC-cch-HHHHHHHHhccc--chHHHHHHHHhhhhhhcccccCChhhHHHHHHHH
Q psy6178 97 RTNDTSGKNIITQLALALADLALQMSA-WEK-PVVYIIEKLSHK--GSILALLEVLTVLPEEVNVLKLGKNRREEFEEEL 172 (912)
Q Consensus 97 ~~~~~~~~~v~~kl~~~la~l~~~~~~-W~~-~~~~l~~~~~~~--~~~~~~L~iL~~l~ee~~~~~~~~~~r~~~~~~l 172 (912)
. +.| +||++-+.++..++...|+ -+. +++.+...+... .....++.++..+ ...+ + ..
T Consensus 125 ~---~~~-~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~-------~-----~~ 186 (526)
T PF01602_consen 125 D---PSP-YVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCND-------D-----SY 186 (526)
T ss_dssp S---SSH-HHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTH-------H-----HH
T ss_pred C---Cch-HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCc-------c-----hh
Confidence 3 455 9999999999999887662 233 577777777544 2233444555555 0000 0 00
Q ss_pred HhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhcCCcc--h--HHHHHHHHhhchhh------------hccCCchHH
Q psy6178 173 KAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSL--H--DAATDCVSALLPIL------------EYNNNFDAV 236 (912)
Q Consensus 173 ~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi~~~l--~--~~a~~~l~~~l~~~------------~~~~~~~~l 236 (912)
....+.+...+.+.+... ++-.+..+++++..+..... . ....+.+...+... .........
T Consensus 187 ~~~~~~~~~~L~~~l~~~--~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~ 264 (526)
T PF01602_consen 187 KSLIPKLIRILCQLLSDP--DPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPEL 264 (526)
T ss_dssp TTHHHHHHHHHHHHHTCC--SHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHH
T ss_pred hhhHHHHHHHhhhccccc--chHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHH
Confidence 011222222222222221 23334444455443331100 0 01111121111100 000001111
Q ss_pred HHHHHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHhhhc-CCCCcccccC
Q psy6178 237 NLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVG-HHDYEATNLG 315 (912)
Q Consensus 237 ~~~l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~~~~~~ 315 (912)
.+..++ .+...+...|.+......+.+..++....+.+. + ....+.+.. .++..
T Consensus 265 ~~~~~~-------~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~------------~~~~~~~l~~~~d~~----- 319 (526)
T PF01602_consen 265 LQKAIN-------PLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-N------------QSLILFFLLYDDDPS----- 319 (526)
T ss_dssp HHHHHH-------HHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-T------------HHHHHHHHHCSSSHH-----
T ss_pred HHhhHH-------HHHHHhhcccchhehhHHHHHHHhhcccchhhh-h------------hhhhhheecCCCChh-----
Confidence 222222 222223344443333333333333333322221 1 111112222 33333
Q ss_pred ccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCCCCCccccchHHHHHhHhHHHHHhhhHhcC
Q psy6178 316 GLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVG 395 (912)
Q Consensus 316 e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee~~~f~~~R~~~~d~l~~~~~~l~ 395 (912)
+...+++-...+.+. .- ...+++.+...+.-.+| .++|..+...+..++....
T Consensus 320 --Ir~~~l~lL~~l~~~----------~n----~~~Il~eL~~~l~~~~d-----------~~~~~~~i~~I~~la~~~~ 372 (526)
T PF01602_consen 320 --IRKKALDLLYKLANE----------SN----VKEILDELLKYLSELSD-----------PDFRRELIKAIGDLAEKFP 372 (526)
T ss_dssp --HHHHHHHHHHHH--H----------HH----HHHHHHHHHHHHHHC-------------HHHHHHHHHHHHHHHHHHG
T ss_pred --HHHHHHHHHhhcccc----------cc----hhhHHHHHHHHHHhccc-----------hhhhhhHHHHHHHHHhccC
Confidence 666666655554432 11 12233333333310001 1277777777777776554
Q ss_pred c--HHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 396 S--STCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 396 ~--~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
+ +.+++.+.+.+..++ ....+.+...+..+....+......+..++..+... .++.++..++|++|.|++...
T Consensus 373 ~~~~~~v~~l~~ll~~~~--~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~---~~~~~~~~~~wilGEy~~~~~ 447 (526)
T PF01602_consen 373 PDAEWYVDTLLKLLEISG--DYVSNEIINVIRDLLSNNPELREKILKKLIELLEDI---SSPEALAAAIWILGEYGELIE 447 (526)
T ss_dssp SSHHHHHHHHHHHHHCTG--GGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSS---SSHHHHHHHHHHHHHHCHHHT
T ss_pred chHHHHHHHHHHhhhhcc--ccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHh---hHHHHHHHHHhhhcccCCccc
Confidence 3 346777776665322 233455566666676665443445677787777663 467789999999999999986
Q ss_pred cCcCcHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhh-hhhhcHHHHHHHHHHhhh-cCCChHHHHHHHHHH
Q psy6178 474 KHPHTLETILNFLLHCLQQ--PGLASVTANALQSISTACCT-HMVGHFNGLLQIIQCLDT-LSISNDAAIGLLKGV 545 (912)
Q Consensus 474 ~~p~~l~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~~-~L~~~~~~ll~~~~~l~~-~~~~~~~~~~l~eai 545 (912)
. .+..+.++..+...+.. +.++...-.++.++...... ...+ .+.+.+..... ...+.+.|.+..+-.
T Consensus 448 ~-~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~---~i~~~~~~~~~~~s~~~evr~Ra~~y~ 519 (526)
T PF01602_consen 448 N-TESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQN---EILQFLLSLATEDSSDPEVRDRAREYL 519 (526)
T ss_dssp T-TTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHH---HHHHHHHCHHHHS-SSHHHHHHHHHHH
T ss_pred c-cccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHH---HHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 5 12566666666665544 34888888888888766442 2333 33444333322 113555555555443
No 31
>KOG0213|consensus
Probab=97.83 E-value=0.099 Score=58.91 Aligned_cols=379 Identities=13% Similarity=0.163 Sum_probs=200.4
Q ss_pred cchHHHHHhHhHHHHHhhhHhcCcH--------HHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHH
Q psy6178 373 DHDFYDFRLKVSELVKDVVFIVGSS--------TCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVE 444 (912)
Q Consensus 373 ~~~f~~~R~~~~d~l~~~~~~l~~~--------~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~ 444 (912)
.|+-..||+-..+++..+...+|.. .++.-++..++..+.. .-..+.+++.+...+......+++++++
T Consensus 726 kde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~---d~vml~gfg~V~~~lg~r~kpylpqi~s 802 (1172)
T KOG0213|consen 726 KDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTE---DSVMLLGFGTVVNALGGRVKPYLPQICS 802 (1172)
T ss_pred ccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccc---hhhhhhhHHHHHHHHhhccccchHHHHH
Confidence 3455578998888988888877752 2333333334321111 1144677888888776666789999999
Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHHHhcCc--CcHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhh-hhhhhcHH
Q psy6178 445 AILHLPPSTHIAVRYTSLLLLGELCEWIDKHP--HTLETILNFLLHCLQQ--PGLASVTANALQSISTACC-THMVGHFN 519 (912)
Q Consensus 445 ~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p--~~l~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~-~~L~~~~~ 519 (912)
.++....+..+.+|..+..++|+.+.-++.-. +.+..+=..|...++. |++-...-.|+..++..-. ..+.|-+.
T Consensus 803 tiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~ 882 (1172)
T KOG0213|consen 803 TILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIK 882 (1172)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChh
Confidence 87665555689999999999999999887543 2333333344466665 7777777778887776643 34666666
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHH
Q psy6178 520 GLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAA 599 (912)
Q Consensus 520 ~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 599 (912)
.++..+..+... -..+.+++.+.-+|.|+..-|.---..-+.++|=-+++-|++.=.. .+ -...+.+|.
T Consensus 883 dllPrltPILkn-rheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~-------iR---Raa~nTfG~ 951 (1172)
T KOG0213|consen 883 DLLPRLTPILKN-RHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKE-------IR---RAAVNTFGY 951 (1172)
T ss_pred hhcccchHhhhh-hHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHhhhhH
Confidence 666666554431 1334677888888888876553112223444444444433322110 01 012233333
Q ss_pred HhhhcCCCc-------------C-CC--CCChHHH-HHhH--hHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHhchhhH
Q psy6178 600 IFKHTSPRI-------------M-SE--PHPCQGV-ITEL--WPVLSKTCETYQQ-DARVMEHSSRCLRYAIRCVGKDFA 659 (912)
Q Consensus 600 ~~~~l~~~~-------------~-~~--~~~~~~~-~~~~--~~~l~~~l~~~~~-~~~v~e~~~~~~~~~~~~l~~~~~ 659 (912)
+.+.++|.. . .. ......+ .+.+ +.++-.++..|.. ..-|-.-+.+.+.++|.-.|+...
T Consensus 952 IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigemsk 1031 (1172)
T KOG0213|consen 952 IAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSK 1031 (1172)
T ss_pred HHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhh
Confidence 333333311 0 00 0000111 1111 1122233333321 122333455556666666666666
Q ss_pred HhHHHHHHHHHHHHhcCCCcchHHhHHHHHH-----HhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHH
Q psy6178 660 HLLEPLVKQIVVLYSKHPHSSFLYLGSILVD-----EYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFR 734 (912)
Q Consensus 660 p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~-----~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~ 734 (912)
.|+-.+.+.+-.... .+...+-.++..+|. .+|. .+.+.+..+++-+-..+ +...|.+++.|..
T Consensus 1032 dYiyav~PlleDAlm-DrD~vhRqta~~~I~Hl~Lg~~g~-g~eda~iHLLN~iWpNI---------le~sPhviqa~~e 1100 (1172)
T KOG0213|consen 1032 DYIYAVTPLLEDALM-DRDLVHRQTAMNVIKHLALGVPGT-GCEDALIHLLNLIWPNI---------LETSPHVIQAFDE 1100 (1172)
T ss_pred hHHHHhhHHHHHhhc-cccHHHHHHHHHHHHHHhcCCCCc-CcHHHHHHHHHHhhhhh---------cCCChHHHHHHHH
Confidence 666555544433321 222223333333332 2232 45556665555443332 3355878877766
Q ss_pred HHHHHHHhCCccccCchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhh
Q psy6178 735 LCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIH 784 (912)
Q Consensus 735 l~~~~l~~~p~~~l~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~ 784 (912)
-+..+-..-. -..+++....+|..+.+.+-+.-+..+..+..
T Consensus 1101 ~~eg~r~~Lg--------~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~ 1142 (1172)
T KOG0213|consen 1101 AMEGLRVALG--------PQAMLKYCLQGLFHPARKVRKRYWTVYNSMYH 1142 (1172)
T ss_pred HHHHHHHHhc--------hHHHHHHHHHhccCcHHHHHHHHHHHHHhHhh
Confidence 5554422111 13456666778887766555554555544443
No 32
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.74 E-value=0.0006 Score=75.47 Aligned_cols=212 Identities=15% Similarity=0.210 Sum_probs=119.7
Q ss_pred hhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCCh
Q psy6178 511 CTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDP 590 (912)
Q Consensus 511 ~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~ 590 (912)
+..+.|+++.+++.+..+....-+ .+.+.+|+|+.+++.... +...++...+++-+.+.+..+..+ |++. .--
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s-~ENeylMk~iMRvl~~~~-e~~~p~~~~il~~L~~il~~v~kN---PsnP--~Fn 89 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGS-AENEYLMKCIMRVLSVLQ-EDILPIAVEILQHLTAILKEVSKN---PSNP--RFN 89 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-S-TC-HHHHHHHHHHHHHST-TTTGGGHHHHHHHHHHHHHHHHTS------H--HHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHhC---CCCc--chh
Confidence 356889999999988776543222 457899999999998775 333444444444444444443332 4431 111
Q ss_pred HHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHH
Q psy6178 591 VIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIV 670 (912)
Q Consensus 591 ~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~ 670 (912)
+-..+.+|.++|...... ++.+..+.+.++|.+..+++.- | .+|.||+.+++..++
T Consensus 90 HylFEsi~~lir~~~~~~---~~~v~~~E~~L~P~f~~ILq~d-----V----------------~EF~PYvfQIla~Ll 145 (435)
T PF03378_consen 90 HYLFESIGALIRFVCEAD---PEAVSQFEEALFPPFQEILQQD-----V----------------QEFIPYVFQILAQLL 145 (435)
T ss_dssp HHHHHHHHHHHHHS-GGG---HH---HHHHHHHHHHHHHHHTT----------------------TTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccCCC---hhHHHHHHHHHHHHHHHHHHHH-----H----------------HHHHHHHHHHHHHHH
Confidence 335799999999865421 2234467788899999988852 1 368899999888877
Q ss_pred HHHhcCCCcchHHhHHHHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccCc
Q psy6178 671 VLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTS 750 (912)
Q Consensus 671 ~~~~~~~~~~~L~~~~~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~ 750 (912)
+.....+. .+...+++..+... ..-+.+.-+-+.-+|+..+++++|..+...
T Consensus 146 e~~~~~~~-------------------p~~y~~L~~~Ll~p---------~lWe~~gniPalvrLL~a~i~k~~~~i~~~ 197 (435)
T PF03378_consen 146 ELRPSSPL-------------------PDAYKQLFPPLLSP---------ALWERRGNIPALVRLLQAYIKKDPSFIVAN 197 (435)
T ss_dssp HHSS--S---------------------TTTGGGHHHHTSG---------GGGGSTTTHHHHHHHHHHHHHHHGGG----
T ss_pred HcCCCCCC-------------------cHHHHHHHHHHcCc---------chhccCCCcCcHHHHHHHHHHhCchhhcch
Confidence 66441111 11222222222222 122233445566699999999999988766
Q ss_pred hhhHHH---HHHHHHhcccCCchhHHHHHHHHHHHhhcc
Q psy6178 751 SFISSV---MQCGILATHLDHREANSTVMKFFYDLIHNN 786 (912)
Q Consensus 751 ~~l~~i---~~~~~~~l~~~~~~~~~~~~~fl~~li~~~ 786 (912)
+.++.+ |+..+++-. . | ..++..+..++...
T Consensus 198 ~~l~~iLgvFQkLi~sk~-~--D--~~gF~LL~~iv~~~ 231 (435)
T PF03378_consen 198 NQLEPILGVFQKLIASKA-N--D--HYGFDLLESIVENL 231 (435)
T ss_dssp S-CHHHHHHHHHHHT-TT-C--H--HHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHCCCC-c--c--hHHHHHHHHHHHHC
Confidence 555544 454433222 2 2 35777888888664
No 33
>KOG0915|consensus
Probab=97.65 E-value=0.067 Score=65.21 Aligned_cols=333 Identities=13% Similarity=0.167 Sum_probs=186.9
Q ss_pred hHhcCcHHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q psy6178 391 VFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCE 470 (912)
Q Consensus 391 ~~~l~~~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~ 470 (912)
..-+|.+.++.+.++ |-+.+..|...-.|-|.++++++...+...++++++++-|-+.-.|+++.|+.+-...=+.
T Consensus 949 ASdl~qPdLVYKFM~-LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~--- 1024 (1702)
T KOG0915|consen 949 ASDLGQPDLVYKFMQ-LANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNA--- 1024 (1702)
T ss_pred HhhcCChHHHHHHHH-HhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHH---
Confidence 344565545555444 3336778999999999999999998777889999999988887778889998765432222
Q ss_pred HHhcC-----cCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhh-hhhhcHHHHHHHHHHhhhcCCChHHHHHHH
Q psy6178 471 WIDKH-----PHTLETILNFLLHCLQQPG--LASVTANALQSISTACCT-HMVGHFNGLLQIIQCLDTLSISNDAAIGLL 542 (912)
Q Consensus 471 ~l~~~-----p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~-~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~ 542 (912)
+-.. .+|+.-++.-++.++.+.+ |+.++|.|+..+.+.-.. .+...++.+...+....+ +.++.+=
T Consensus 1025 -Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmD-----DIKEsVR 1098 (1702)
T KOG0915|consen 1025 -LITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMD-----DIKESVR 1098 (1702)
T ss_pred -hccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 1112 2578888888999999875 999999999998876221 233334443333322111 1111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhH
Q psy6178 543 KGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITEL 622 (912)
Q Consensus 543 eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 622 (912)
++- +.....+..+| +|..++. ...-...++..+
T Consensus 1099 ~aa---------~~~~~~lsKl~-----------------------------------vr~~d~~---~~~~~~~~l~~i 1131 (1702)
T KOG0915|consen 1099 EAA---------DKAARALSKLC-----------------------------------VRICDVT---NGAKGKEALDII 1131 (1702)
T ss_pred HHH---------HHHHHHHHHHH-----------------------------------hhhcccC---CcccHHHHHHHH
Confidence 110 11111111111 1111110 001123445555
Q ss_pred hHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCCCcchHHhHHHHHH----Hh------
Q psy6178 623 WPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVD----EY------ 692 (912)
Q Consensus 623 ~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~----~~------ 692 (912)
+|.+..- ...+.-.+|+..+...+..+..+.|....|++|.++..+...|..-...-.-|++.-+.. ..
T Consensus 1132 LPfLl~~-gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s 1210 (1702)
T KOG0915|consen 1132 LPFLLDE-GIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRAS 1210 (1702)
T ss_pred HHHHhcc-CcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 6654321 012344778888888888999999999999999999999888865443333333222210 00
Q ss_pred ---cCc------cchHHHH-HHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccCchhhHHHHHHHHH
Q psy6178 693 ---ATS------HCVSGLL-DMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGIL 762 (912)
Q Consensus 693 ---g~~------~~~~~l~-~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~~~l~~i~~~~~~ 762 (912)
++| .|.+.+. .+++.+++++.+++..+ ..-+ ..-..=.++.-+..+++..+- |+...++.....
T Consensus 1211 ~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~s---Vgl~-Tkvg~A~fI~~L~~r~~~emt--P~sgKll~al~~ 1284 (1702)
T KOG0915|consen 1211 AAKSSPMMETINKCINYIDISVLEELIPRLTELVRGS---VGLG-TKVGCASFISLLVQRLGSEMT--PYSGKLLRALFP 1284 (1702)
T ss_pred hhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---CCCC-cchhHHHHHHHHHHHhccccC--cchhHHHHHHhh
Confidence 001 0111111 34555666666666642 1222 122333556667777776663 234445554444
Q ss_pred hcccCCchhHHHHHHHHHHHhhccC
Q psy6178 763 ATHLDHREANSTVMKFFYDLIHNNR 787 (912)
Q Consensus 763 ~l~~~~~~~~~~~~~fl~~li~~~~ 787 (912)
+.+-.+....|+...-+..++....
T Consensus 1285 g~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1285 GAKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCC
Confidence 5555555555666666666665543
No 34
>KOG1991|consensus
Probab=97.50 E-value=0.38 Score=56.62 Aligned_cols=151 Identities=16% Similarity=0.237 Sum_probs=88.8
Q ss_pred HHHHHHHHhhcccCCCCcCcHHHHHH----HHhcC----CCCchHHHHHHHHHHHHHHHHHHhcCcC---cH-HHHHHHH
Q psy6178 419 AALYIMQSVAKNVLPEENDVVPKVVE----AILHL----PPSTHIAVRYTSLLLLGELCEWIDKHPH---TL-ETILNFL 486 (912)
Q Consensus 419 a~L~~l~~iae~~~~~~~~~l~~l~~----~l~~~----~~~~~~~v~~t~~~~lg~y~~~l~~~p~---~l-~~~l~~l 486 (912)
|++.++..++.. ...+.++.+++ ++.+. +...+++-...|++++|+.++.+.+..- .+ ..+.+.+
T Consensus 391 Aa~~~l~~~~~K---R~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hV 467 (1010)
T KOG1991|consen 391 AALDFLTTLVSK---RGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHV 467 (1010)
T ss_pred HHHHHHHHHHHh---cchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHh
Confidence 566665544443 22344555554 34322 2234678888999999999998875432 12 2345555
Q ss_pred HHhcCCCC--hHHHHHHHHHHHHH-Hhhhh--hhhcHHHHHHHHHHhh-hcCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy6178 487 LHCLQQPG--LASVTANALQSIST-ACCTH--MVGHFNGLLQIIQCLD-TLSISNDAAIGLLKGVAIIVSDMPQDQISEA 560 (912)
Q Consensus 487 ~~~l~~~~--v~~~A~~al~~l~~-~~~~~--L~~~~~~ll~~~~~l~-~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~ 560 (912)
++.+++|- ++++||+-+..+|+ +-+.. +..-++...+ .+. +..++ .+....-|+-..+++.+ +..++
T Consensus 468 fP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~---~l~~d~~lP--V~VeAalALq~fI~~~~--~~~e~ 540 (1010)
T KOG1991|consen 468 FPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHN---CLLNDNELP--VRVEAALALQSFISNQE--QADEK 540 (1010)
T ss_pred hHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH---HhccCCcCc--hhhHHHHHHHHHHhcch--hhhhh
Confidence 66777775 99999999999994 43321 1111111111 222 22222 45566667777777643 33356
Q ss_pred HHHHHHHhHHHHHHHHHhc
Q psy6178 561 LKQLCLVQVKPLCELIEKQ 579 (912)
Q Consensus 561 l~~l~~p~~~~l~~~~~~~ 579 (912)
+...+.|+++.|-.+.+.-
T Consensus 541 ~~~hvp~~mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 541 VSAHVPPIMQELLKLSNEV 559 (1010)
T ss_pred HhhhhhHHHHHHHHHHHhc
Confidence 7778888888877776643
No 35
>KOG0212|consensus
Probab=97.38 E-value=0.21 Score=54.84 Aligned_cols=346 Identities=13% Similarity=0.196 Sum_probs=171.3
Q ss_pred ccchhHHHHHHHHhhcccCC-CCcCcHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHHHhcC-cCcHHHHHHHHHHhc
Q psy6178 414 WEQTEAALYIMQSVAKNVLP-EENDVVPKVVEAILH-LPPSTHIAVRYTSLLLLGELCEWIDKH-PHTLETILNFLLHCL 490 (912)
Q Consensus 414 w~~~Ea~L~~l~~iae~~~~-~~~~~l~~l~~~l~~-~~~~~~~~v~~t~~~~lg~y~~~l~~~-p~~l~~~l~~l~~~l 490 (912)
+.++.|+-+-+..+-..+.. ++.+.+.++++.+.. ....++.--|+..+.-+...+.-+... -.|+..+++-++.++
T Consensus 14 YekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf 93 (675)
T KOG0212|consen 14 YEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCF 93 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhc
Confidence 44455666666665555433 244567777775432 222222323334444444433334433 237888888888999
Q ss_pred CCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcC---CC--hHHHHHHHHHHHHHHhcCCHHHH-HHHHH
Q psy6178 491 QQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLS---IS--NDAAIGLLKGVAIIVSDMPQDQI-SEALK 562 (912)
Q Consensus 491 ~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~---~~--~~~~~~l~eai~~vi~~~p~~~~-~~~l~ 562 (912)
++++ ++..||.++.++++.|+....+|.+.+.+.+.++.... +. .+-.-++++.+. .++. .=.+.
T Consensus 94 ~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIV-------te~~~tFsL~ 166 (675)
T KOG0212|consen 94 SDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIV-------TESASTFSLP 166 (675)
T ss_pred cCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhc-------cccccccCHH
Confidence 9876 88999999999999999999999999999988764321 11 111122222221 1111 00111
Q ss_pred HHHHHhHHHH--------------HHHHHhcCCCCCCCCCChHHHH-HHHHHHhhhcCCCcCCCCCChHHHHHhHhH-HH
Q psy6178 563 QLCLVQVKPL--------------CELIEKQIKPEKNKKSDPVIWL-DRLAAIFKHTSPRIMSEPHPCQGVITELWP-VL 626 (912)
Q Consensus 563 ~l~~p~~~~l--------------~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-~l 626 (912)
.++.-+-+++ -.++... |+- .....+ +.+.++|..++... +.+..+.+.++. ++
T Consensus 167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~--P~~----~m~~yl~~~ldGLf~~LsD~s----~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSV--PDL----EMISYLPSLLDGLFNMLSDSS----DEVRTLTDTLLSEFL 236 (675)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcC--CcH----HHHhcchHHHHHHHHHhcCCc----HHHHHHHHHHHHHHH
Confidence 1111111111 1111111 110 011111 23344444444321 111111111111 11
Q ss_pred HHHH----------------Hh-hccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCCCc-ch-HH-hHH
Q psy6178 627 SKTC----------------ET-YQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHS-SF-LY-LGS 686 (912)
Q Consensus 627 ~~~l----------------~~-~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~~~-~~-L~-~~~ 686 (912)
.++- .+ ...++++...+...+...+...|.++.|+++.++..++.....++.. .+ .. ...
T Consensus 237 ~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 237 AEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred HHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence 1111 11 12356666777777777788888899999999888777665544332 11 11 111
Q ss_pred -HHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccCchhhHHHHHHHHHhcc
Q psy6178 687 -ILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATH 765 (912)
Q Consensus 687 -~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~~~l~~i~~~~~~~l~ 765 (912)
.+...++++.-...+. ++.++......|. .+.-|..-+..+-+..+..+.|..++. ....+|.-.+..+.
T Consensus 317 ~~l~~l~s~~~~~~~id--~~~ii~vl~~~l~-----~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tLs 387 (675)
T KOG0212|consen 317 GLLLKLVSSERLKEEID--YGSIIEVLTKYLS-----DDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTLS 387 (675)
T ss_pred HHHHHHHhhhhhccccc--hHHHHHHHHHHhh-----cchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhhc
Confidence 1111222200000000 1122222212222 234456667777788888889988754 22344544455666
Q ss_pred cCCchhHHHHHHHHHHHhhc
Q psy6178 766 LDHREANSTVMKFFYDLIHN 785 (912)
Q Consensus 766 ~~~~~~~~~~~~fl~~li~~ 785 (912)
-..-+++.-++..+..+...
T Consensus 388 d~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 388 DRSDEVVLLALSLLASICSS 407 (675)
T ss_pred CchhHHHHHHHHHHHHHhcC
Confidence 66666666676666666643
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=97.36 E-value=0.58 Score=55.69 Aligned_cols=124 Identities=12% Similarity=0.034 Sum_probs=73.3
Q ss_pred ccCCChhhHHHHHHHHHHhhc-Chh-HHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHH
Q psy6178 18 YLNPNKTEKEKASQWLHQLQK-SIY-AWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHL 95 (912)
Q Consensus 18 ~~~~~~~~~~~A~~~L~~~q~-s~~-aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~~lk~~Ll~~l 95 (912)
.+++|.+.||-..-||..+-+ .|+ +--.+..+.+.-.+.++.+|-.|..+|-.--. ..+-+.++..+
T Consensus 77 ~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~-----------~~i~e~l~~~l 145 (746)
T PTZ00429 77 APSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV-----------SSVLEYTLEPL 145 (746)
T ss_pred hCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-----------HHHHHHHHHHH
Confidence 344678889999999987766 566 56666677666554457888888777653111 12333344443
Q ss_pred HHh-ccCCChhHHHHHHHHHHHHHhhccC---cchHHHHHHHHhccc--chHHHHHHHHhhhhh
Q psy6178 96 CRT-NDTSGKNIITQLALALADLALQMSA---WEKPVVYIIEKLSHK--GSILALLEVLTVLPE 153 (912)
Q Consensus 96 ~~~-~~~~~~~v~~kl~~~la~l~~~~~~---W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~e 153 (912)
.+. ...+| +||++-+.+++.++...++ =.++++.+...+... ......+..|..+.+
T Consensus 146 kk~L~D~~p-YVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 146 RRAVADPDP-YVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred HHHhcCCCH-HHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 332 22455 9999999888888765542 123445555555443 223344555555544
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.05 E-value=1 Score=52.56 Aligned_cols=200 Identities=16% Similarity=0.173 Sum_probs=112.4
Q ss_pred cchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHH-HHHHHHHhcCCC
Q psy6178 415 EQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLET-ILNFLLHCLQQP 493 (912)
Q Consensus 415 ~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~-~l~~l~~~l~~~ 493 (912)
..+-.||.+++.++. .+..+.+++.+.++-.+++|.||++|+.++.++... .|+.++. .++.+...+.++
T Consensus 94 ~~~~lAL~~l~~i~~------~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~---~p~~~~~~~~~~l~~lL~d~ 164 (526)
T PF01602_consen 94 YIRGLALRTLSNIRT------PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK---DPDLVEDELIPKLKQLLSDK 164 (526)
T ss_dssp HHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CHCCHHGGHHHHHHHHTTHS
T ss_pred HHHHHHHhhhhhhcc------cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhhhccCC
Confidence 334566766666652 334455555444433356899999999988876655 6888877 688888888765
Q ss_pred C--hHHHHHHHHHHHHHHhhhhh-hhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHH
Q psy6178 494 G--LASVTANALQSISTACCTHM-VGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVK 570 (912)
Q Consensus 494 ~--v~~~A~~al~~l~~~~~~~L-~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~ 570 (912)
+ |...|..++..+ .+.+.. .+.++.+...+..+... .++-.+..+++.+..+...-+. .... ..+++++..
T Consensus 165 ~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~-~~~~~q~~il~~l~~~~~~~~~-~~~~--~~~i~~l~~ 238 (526)
T PF01602_consen 165 DPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSD-PDPWLQIKILRLLRRYAPMEPE-DADK--NRIIEPLLN 238 (526)
T ss_dssp SHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTC-CSHHHHHHHHHHHTTSTSSSHH-HHHH--HHHHHHHHH
T ss_pred cchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccc-cchHHHHHHHHHHHhcccCChh-hhhH--HHHHHHHHH
Confidence 4 888888888888 332222 24455556555544322 3444567777777765443322 1111 333444433
Q ss_pred HHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHH
Q psy6178 571 PLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYA 650 (912)
Q Consensus 571 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~ 650 (912)
.+. .. .....++++..+.. +.+ -.+..+.+++.+..++. ..++.++-.+...+..+
T Consensus 239 ~l~----s~---------~~~V~~e~~~~i~~-l~~--------~~~~~~~~~~~L~~lL~--s~~~nvr~~~L~~L~~l 294 (526)
T PF01602_consen 239 LLQ----SS---------SPSVVYEAIRLIIK-LSP--------SPELLQKAINPLIKLLS--SSDPNVRYIALDSLSQL 294 (526)
T ss_dssp HHH----HH---------HHHHHHHHHHHHHH-HSS--------SHHHHHHHHHHHHHHHT--SSSHHHHHHHHHHHHHH
T ss_pred Hhh----cc---------ccHHHHHHHHHHHH-hhc--------chHHHHhhHHHHHHHhh--cccchhehhHHHHHHHh
Confidence 333 11 01223444444432 221 12256667777777666 45666766666666666
Q ss_pred HHH
Q psy6178 651 IRC 653 (912)
Q Consensus 651 ~~~ 653 (912)
...
T Consensus 295 ~~~ 297 (526)
T PF01602_consen 295 AQS 297 (526)
T ss_dssp CCH
T ss_pred hcc
Confidence 443
No 38
>KOG1062|consensus
Probab=96.89 E-value=1.3 Score=51.09 Aligned_cols=192 Identities=13% Similarity=0.177 Sum_probs=100.2
Q ss_pred HHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCCCCCccccchHHH
Q psy6178 299 LVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYD 378 (912)
Q Consensus 299 ~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee~~~f~~ 378 (912)
.+++|..+|+.. +...++|--+.+... .-.+.+..+++. .+.++ | + +
T Consensus 354 tIleCL~DpD~S-------IkrralELs~~lvn~----------~Nv~~mv~eLl~-fL~~~----d--------~---~ 400 (866)
T KOG1062|consen 354 TILECLKDPDVS-------IKRRALELSYALVNE----------SNVRVMVKELLE-FLESS----D--------E---D 400 (866)
T ss_pred HHHHHhcCCcHH-------HHHHHHHHHHHHhcc----------ccHHHHHHHHHH-HHHhc----c--------H---H
Confidence 467788888877 888999876665532 111222222222 11111 1 1 2
Q ss_pred HHhHhHHHHHhhhHhcCcH--HHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCC--CCch
Q psy6178 379 FRLKVSELVKDVVFIVGSS--TCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLP--PSTH 454 (912)
Q Consensus 379 ~R~~~~d~l~~~~~~l~~~--~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~--~~~~ 454 (912)
||.++.--+..+...+.++ .+++.++..+.. ..++-.-++.=-.+.-|+++..+.......++...+.... .-+.
T Consensus 401 ~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~-aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~ 479 (866)
T KOG1062|consen 401 FKADIASKIAELAEKFAPDKRWHIDTMLKVLKT-AGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQ 479 (866)
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh-cccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhh
Confidence 3444443333444444443 356666555543 2223333444445666777765544444555554432211 1135
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-----c------CcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhcHHHHHH
Q psy6178 455 IAVRYTSLLLLGELCEWIDKH-----P------HTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQ 523 (912)
Q Consensus 455 ~~v~~t~~~~lg~y~~~l~~~-----p------~~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~ 523 (912)
+.+.+-+.|+||.|++++.+. | +.+..+...+.....+..+...|-.|+.+|....... .+-+..++.
T Consensus 480 e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~-~~ri~~lI~ 558 (866)
T KOG1062|consen 480 EPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS-SERIKQLIS 558 (866)
T ss_pred hhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-HHHHHHHHH
Confidence 667888999999999988763 1 2233333333333444457777888888887553322 344444444
Q ss_pred HH
Q psy6178 524 II 525 (912)
Q Consensus 524 ~~ 525 (912)
.+
T Consensus 559 ~~ 560 (866)
T KOG1062|consen 559 SY 560 (866)
T ss_pred Hh
Confidence 44
No 39
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.77 E-value=1.6 Score=50.28 Aligned_cols=136 Identities=19% Similarity=0.272 Sum_probs=81.9
Q ss_pred ccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcH--HHHHHHHHHhcC
Q psy6178 414 WEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTL--ETILNFLLHCLQ 491 (912)
Q Consensus 414 w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l--~~~l~~l~~~l~ 491 (912)
-..++.+..+|..+-+.... .+..++..+.+.....++++.||.-++..|+++.+--..--+.+ ..++..+...+.
T Consensus 52 ~e~v~~~~~iL~~~l~~~~~--~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~ 129 (503)
T PF10508_consen 52 REQVELICDILKRLLSALSP--DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR 129 (503)
T ss_pred hHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc
Confidence 34467777777777776543 23355665555544445689999999999998753111000111 245666677788
Q ss_pred CCC--hHHHHHHHHHHHHHHhhhhhhhc-HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCC
Q psy6178 492 QPG--LASVTANALQSISTACCTHMVGH-FNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMP 553 (912)
Q Consensus 492 ~~~--v~~~A~~al~~l~~~~~~~L~~~-~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p 553 (912)
+++ |+..|+.++.+++..- ..+... -+.++..+..+... -+...|.++++.+..+.+..+
T Consensus 130 ~~d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 130 DPDLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred CCcHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCH
Confidence 876 8899999999998642 111111 01114444444432 244578999999999876643
No 40
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.54 E-value=0.0081 Score=51.20 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=66.6
Q ss_pred hhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcC-cCcHHHHHHHHHHhcCCCC-
Q psy6178 417 TEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKH-PHTLETILNFLLHCLQQPG- 494 (912)
Q Consensus 417 ~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~-p~~l~~~l~~l~~~l~~~~- 494 (912)
+-++|.++.+++.+++..-..+++.+++.++..-.+++++||+.+|+.+...+...... -.++..++..+.+.+.||+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 35788999999998877667788888888777767788999999999999888876532 1366778888888888765
Q ss_pred -hHHHHHHHHHHH
Q psy6178 495 -LASVTANALQSI 506 (912)
Q Consensus 495 -v~~~A~~al~~l 506 (912)
|+..| ..+.++
T Consensus 83 ~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 83 NVRSAA-ELLDRL 94 (97)
T ss_pred hHHHHH-HHHHHH
Confidence 55444 444443
No 41
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.49 E-value=0.031 Score=47.69 Aligned_cols=73 Identities=22% Similarity=0.320 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHhcC-cCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhh
Q psy6178 458 RYTSLLLLGELCEWIDKH-PHTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDT 530 (912)
Q Consensus 458 ~~t~~~~lg~y~~~l~~~-p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~ 530 (912)
|+.++..+...+.-+..+ .++++.+++.++.++.|++ |+..||.||.++++.++..+.++++.+++.+..+..
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 556666666666666554 4788999999999999865 999999999999999999999999999988876554
No 42
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.41 E-value=2.2 Score=47.60 Aligned_cols=271 Identities=14% Similarity=0.161 Sum_probs=143.2
Q ss_pred CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCc--CcHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHh
Q psy6178 435 ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHP--HTLETILNFLLHCLQQ--PGLASVTANALQSISTAC 510 (912)
Q Consensus 435 ~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p--~~l~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~ 510 (912)
..++++.+++.++.+..+..|.+|..+..+.|..+.-++.-. +.+..+=+.+...++. |++-...-.|+..+....
T Consensus 598 ~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 598 GKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred cCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence 567899999987776666678999999999999999887543 3344555555566765 677666666666665543
Q ss_pred h-hhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCC
Q psy6178 511 C-THMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSD 589 (912)
Q Consensus 511 ~-~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~ 589 (912)
+ ..+.|-+.+++..+..+... -..+...+-+.-+|.|.-..|.---..-+.++|=-+++-|...= ++.+.
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrn-kh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~n-------KeiRR- 748 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRN-KHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWN-------KEIRR- 748 (975)
T ss_pred cccccCCchhhccccccHhhhh-hhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhh-------HHHHH-
Confidence 3 34666666666665554321 12223445555566666555431122334444444444333210 11111
Q ss_pred hHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHH
Q psy6178 590 PVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQI 669 (912)
Q Consensus 590 ~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l 669 (912)
.+-+.+|.+.+.++| +.++.++..-++ ..+=..++|..+. +...++..+|| .+++.+
T Consensus 749 --~A~~tfG~Is~aiGP-------------qdvL~~LlnnLk----vqeRq~Rvctsva--I~iVae~cgpf--sVlP~l 805 (975)
T COG5181 749 --NATETFGCISRAIGP-------------QDVLDILLNNLK----VQERQQRVCTSVA--ISIVAEYCGPF--SVLPTL 805 (975)
T ss_pred --hhhhhhhhHHhhcCH-------------HHHHHHHHhcch----HHHHHhhhhhhhh--hhhhHhhcCch--hhHHHH
Confidence 134556777777775 222222222222 1222344555543 33346666675 345556
Q ss_pred HHHHhcCCC---cchHHhHHHHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCcc
Q psy6178 670 VVLYSKHPH---SSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIA 746 (912)
Q Consensus 670 ~~~~~~~~~---~~~L~~~~~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~ 746 (912)
+..|.+... ...|...+.+..-.|+ ...+++. .+..+|... -.+.+|-..+.-.+++..+..+||..
T Consensus 806 m~dY~TPe~nVQnGvLkam~fmFeyig~-~s~dYvy--------~itPlleDA-ltDrD~vhRqta~nvI~Hl~Lnc~gt 875 (975)
T COG5181 806 MSDYETPEANVQNGVLKAMCFMFEYIGQ-ASLDYVY--------SITPLLEDA-LTDRDPVHRQTAMNVIRHLVLNCPGT 875 (975)
T ss_pred HhcccCchhHHHHhHHHHHHHHHHHHHH-HHHHHHH--------HhhHHHHhh-hcccchHHHHHHHHHHHHHhcCCCCc
Confidence 677765443 2334444444333333 1111111 111222210 12345656667777888888777754
Q ss_pred c
Q psy6178 747 F 747 (912)
Q Consensus 747 ~ 747 (912)
.
T Consensus 876 g 876 (975)
T COG5181 876 G 876 (975)
T ss_pred c
Confidence 3
No 43
>KOG1248|consensus
Probab=96.06 E-value=5.3 Score=48.54 Aligned_cols=186 Identities=14% Similarity=0.152 Sum_probs=112.9
Q ss_pred chhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhc------CCCcchHHhHH--HHHHHhcCccchHHHHHHHHH
Q psy6178 636 DARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSK------HPHSSFLYLGS--ILVDEYATSHCVSGLLDMVQA 707 (912)
Q Consensus 636 ~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~------~~~~~~L~~~~--~lv~~~g~~~~~~~l~~l~~~ 707 (912)
+....-..+.|++.++..++.+.-.+++..+.-++-.+.. ...-.+|..++ .....+|++.....+...+..
T Consensus 710 ~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~ 789 (1176)
T KOG1248|consen 710 SSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSI 789 (1176)
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHH
Confidence 3445667799999999999977777877776555444322 12223466666 444556652223334443333
Q ss_pred HhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccCchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhhccC
Q psy6178 708 FLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNR 787 (912)
Q Consensus 708 l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~ 787 (912)
+... +-. +.+-++..-.=.+++++... ..++..+.+..+++.....++...++..++|..|+..++..-
T Consensus 790 Isag----l~g-----d~~~~~as~Ivai~~il~e~-~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~- 858 (1176)
T KOG1248|consen 790 ISAG----LVG-----DSTRVVASDIVAITHILQEF-KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF- 858 (1176)
T ss_pred HHhh----hcc-----cHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC-
Confidence 3221 111 12222222122233333332 345666788888888888889999999999999998888543
Q ss_pred CCCcccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccccCCCcchhhHHHHHHHHHHhChHH
Q psy6178 788 VLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQV 856 (912)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~~~~~~~~~~~a~vL~~l~~~~~~~ 856 (912)
+ ...+..+-+.|+..++. +..+.-+...-.+--+|-.|+++|+.+
T Consensus 859 --p---------------------e~~l~~~~~~LL~sll~-ls~d~k~~~r~Kvr~LlekLirkfg~~ 903 (1176)
T KOG1248|consen 859 --P---------------------EECLSPHLEELLPSLLA-LSHDHKIKVRKKVRLLLEKLIRKFGAE 903 (1176)
T ss_pred --C---------------------HHHHhhhHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHhCHH
Confidence 1 12344555666666655 444556677788888888999998755
No 44
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.96 E-value=2.1 Score=47.81 Aligned_cols=127 Identities=16% Similarity=0.195 Sum_probs=87.2
Q ss_pred HHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHH
Q psy6178 378 DFRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAV 457 (912)
Q Consensus 378 ~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v 457 (912)
+-|+.+-+++-.+...+|+..++..++++|+..+.+ ..=..-.+++-+||.|.+ -+.+|.+++- =..+.-.|
T Consensus 745 eiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq--~RvctsvaI~iVae~cgp--fsVlP~lm~d----Y~TPe~nV 816 (975)
T COG5181 745 EIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQ--QRVCTSVAISIVAEYCGP--FSVLPTLMSD----YETPEANV 816 (975)
T ss_pred HHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHH--hhhhhhhhhhhhHhhcCc--hhhHHHHHhc----ccCchhHH
Confidence 567888888989999999988999999888632211 122334578888898864 3344544432 11244566
Q ss_pred HHHHHHHHHHHHHHHhcC-cCcHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhh
Q psy6178 458 RYTSLLLLGELCEWIDKH-PHTLETILNFLLHCLQQP--GLASVTANALQSISTACCT 512 (912)
Q Consensus 458 ~~t~~~~lg~y~~~l~~~-p~~l~~~l~~l~~~l~~~--~v~~~A~~al~~l~~~~~~ 512 (912)
+...+..+.-+-+++..- -+|.-.+.+.+-.+|.|. ..+..|+..++++.-.|..
T Consensus 817 QnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 817 QNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 666666665555555433 378888888888899874 4788899999999888765
No 45
>KOG0213|consensus
Probab=95.83 E-value=4.8 Score=46.15 Aligned_cols=367 Identities=12% Similarity=0.085 Sum_probs=180.1
Q ss_pred HHhHhHHHHHhhhHhcCcHHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHH
Q psy6178 379 FRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVR 458 (912)
Q Consensus 379 ~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~ 458 (912)
.|...+-.+..+...+|-++++..+-... .+-.+|+....++.+...|+.-..-.--+++..++.+|.....+.+..||
T Consensus 492 VRnttarafavvasalgip~llpfLkavc-~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR 570 (1172)
T KOG0213|consen 492 VRNTTARAFAVVASALGIPALLPFLKAVC-GSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVR 570 (1172)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHh-ccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhh
Confidence 34455555556667777665554433322 24458999999999999999865433346777888888776667788898
Q ss_pred HHHHHHHHHHHHHHhcC-cCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHH-HHHHHH-HHhhhcCC
Q psy6178 459 YTSLLLLGELCEWIDKH-PHTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFN-GLLQII-QCLDTLSI 533 (912)
Q Consensus 459 ~t~~~~lg~y~~~l~~~-p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~-~ll~~~-~~l~~~~~ 533 (912)
-.+...++..++-.... -+.+..+|.-|-.+++..+ .-.+=-+|+..+|-....+-..|.. .+|-.+ ..+.+
T Consensus 571 ~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~s--- 647 (1172)
T KOG0213|consen 571 TITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGS--- 647 (1172)
T ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCC---
Confidence 88878887777654322 2567778887777776543 3333345555555554444444432 122221 11221
Q ss_pred ChHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHH-HHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCC
Q psy6178 534 SNDA-AIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLC-ELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSE 611 (912)
Q Consensus 534 ~~~~-~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~ 611 (912)
+.++ +..++.-+-..++....+...-+... +..++..++ .-+..+ -..++ ...+.-..++..++.
T Consensus 648 PDeemkkivLKVv~qcc~t~Gv~~~y~r~di-lp~ff~~fw~rrmA~d---rr~yk----qlv~ttv~ia~KvG~----- 714 (1172)
T KOG0213|consen 648 PDEEMKKIVLKVVKQCCATDGVEPAYIRFDI-LPEFFFSFWGRRMALD---RRNYK----QLVDTTVEIAAKVGS----- 714 (1172)
T ss_pred ChHHHHHHHHHHHHHHhcccCCCHHHHhhhh-hHHHHhhhhhhhhhcc---ccchh----hHHHHHHHHHHHhCc-----
Confidence 1111 11222222222222211111111111 122221111 111110 00011 112222233333322
Q ss_pred CCChHHHHHhHhHHHHHHHHhhccchh-HHHHHHHHHHHHHHHhch-hhH-HhHHHHHHHHHHHHhcCCC--cchHHhHH
Q psy6178 612 PHPCQGVITELWPVLSKTCETYQQDAR-VMEHSSRCLRYAIRCVGK-DFA-HLLEPLVKQIVVLYSKHPH--SSFLYLGS 686 (912)
Q Consensus 612 ~~~~~~~~~~~~~~l~~~l~~~~~~~~-v~e~~~~~~~~~~~~l~~-~~~-p~l~~l~~~l~~~~~~~~~--~~~L~~~~ 686 (912)
-|++.+++..+.++++ -+.-......+++..+|. ++. .+...+++.++..|+.... +-.|...+
T Consensus 715 -----------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg 783 (1172)
T KOG0213|consen 715 -----------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFG 783 (1172)
T ss_pred -----------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHH
Confidence 1334444444445444 111223334444444443 222 2344556667777754332 33445566
Q ss_pred HHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHH---HhCCccccCchhhHHHHHHHHHh
Q psy6178 687 ILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFL---QRAPIAFLTSSFISSVMQCGILA 763 (912)
Q Consensus 687 ~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l---~~~p~~~l~~~~l~~i~~~~~~~ 763 (912)
.++..||. .+.+.+.+ +++.++..|++. .|++.+.--.+++++. +.|... .++..+=-..-..
T Consensus 784 ~V~~~lg~-r~kpylpq----i~stiL~rLnnk-----sa~vRqqaadlis~la~Vlktc~ee----~~m~~lGvvLyEy 849 (1172)
T KOG0213|consen 784 TVVNALGG-RVKPYLPQ----ICSTILWRLNNK-----SAKVRQQAADLISSLAKVLKTCGEE----KLMGHLGVVLYEY 849 (1172)
T ss_pred HHHHHHhh-ccccchHH----HHHHHHHHhcCC-----ChhHHHHHHHHHHHHHHHHHhccHH----HHHHHhhHHHHHh
Confidence 77777776 34444443 556667777753 4677776666666553 334321 1111111111233
Q ss_pred cccCCchhHHHHHHHHHHHhhccC
Q psy6178 764 THLDHREANSTVMKFFYDLIHNNR 787 (912)
Q Consensus 764 l~~~~~~~~~~~~~fl~~li~~~~ 787 (912)
+.-..+++.-+++..+..+.+..+
T Consensus 850 lgeeypEvLgsILgAikaI~nvig 873 (1172)
T KOG0213|consen 850 LGEEYPEVLGSILGAIKAIVNVIG 873 (1172)
T ss_pred cCcccHHHHHHHHHHHHHHHHhcc
Confidence 556677777777777777666543
No 46
>KOG1059|consensus
Probab=95.65 E-value=5.5 Score=45.61 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=36.2
Q ss_pred cccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhcc-CcchHHHHHHHHhccc
Q psy6178 81 SESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS-AWEKPVVYIIEKLSHK 138 (912)
Q Consensus 81 ~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~~-~W~~~~~~l~~~~~~~ 138 (912)
++-..-|-+-++.+|.. ..| ++|.|-...+=.+++++| .-...|+-+.+.+..+
T Consensus 139 pdLARDLa~Dv~tLL~s---skp-YvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDp 193 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNS---SKP-YVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDP 193 (877)
T ss_pred chhhHHHHHHHHHHHhc---Cch-HHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCC
Confidence 34444566667777754 445 899998877777777776 4555666777777554
No 47
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.63 E-value=0.0048 Score=46.61 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=43.6
Q ss_pred ccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q psy6178 414 WEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGE 467 (912)
Q Consensus 414 w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~ 467 (912)
|+..++++.+|+.+++..+....++++.+++.|..+..++++.||.++++.||+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 677899999999988776655566788888877666666677999999999986
No 48
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.43 E-value=5.9 Score=44.46 Aligned_cols=57 Identities=7% Similarity=0.156 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHhCCccccCchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhhc
Q psy6178 728 TVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHN 785 (912)
Q Consensus 728 ~~~~~f~l~~~~l~~~p~~~l~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~ 785 (912)
....|+.-+..++++.|..++. +.+..++...+.++..++.+...++++.+..++.-
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~-~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLL-PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 6677888888888988876653 35677888888899999999899999999988864
No 49
>KOG2274|consensus
Probab=95.42 E-value=1.9 Score=50.49 Aligned_cols=237 Identities=9% Similarity=0.123 Sum_probs=128.1
Q ss_pred HHhhcccCCC-CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhc----C-cCcHHHHHHHHHHhcCCCChHHH
Q psy6178 425 QSVAKNVLPE-ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK----H-PHTLETILNFLLHCLQQPGLASV 498 (912)
Q Consensus 425 ~~iae~~~~~-~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~----~-p~~l~~~l~~l~~~l~~~~v~~~ 498 (912)
+++...++.+ -.+..|.++..|.++..+....+....+++++..+.+=.. . ....|..++.++..-.+|-|...
T Consensus 513 ~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~ 592 (1005)
T KOG2274|consen 513 RAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASL 592 (1005)
T ss_pred HHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHH
Confidence 3333444333 3567788888877776544556666666777666554221 1 24567777777777788989999
Q ss_pred HHHHHHHHHHHhhhhhhhc----HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHH
Q psy6178 499 TANALQSISTACCTHMVGH----FNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCE 574 (912)
Q Consensus 499 A~~al~~l~~~~~~~L~~~----~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~ 574 (912)
+-..|..+|+. .....|+ +|.++..+.. .....+.......++-+..++..-|++--...+.....|+. +
T Consensus 593 ~qd~f~el~q~-~~~~g~m~e~~iPslisil~~-~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVa----k 666 (1005)
T KOG2274|consen 593 AQDLFEELLQI-AANYGPMQERLIPSLISVLQL-NADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVA----K 666 (1005)
T ss_pred HHHHHHHHHHH-HHhhcchHHHHHHHHHHHHcC-cccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhH----h
Confidence 99999999973 3334444 4555555431 11112334455677888888988876522223333333333 2
Q ss_pred HHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCc-CCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHH----
Q psy6178 575 LIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRI-MSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRY---- 649 (912)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~---- 649 (912)
++- .. ++.+ .+...-+|+.++...-.+.. .+..+|... +..+|.++.+++.. +.-+.+|...++
T Consensus 667 ~tl-Hs-dD~~---tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~-~~yImqV~sqLLdp-----~~sds~a~~VG~lV~t 735 (1005)
T KOG2274|consen 667 ITL-HS-DDHE---TLQNATECLRALISVTLEQLLTWHDEPGHN-LWYIMQVLSQLLDP-----ETSDSAAAFVGPLVLT 735 (1005)
T ss_pred hee-ec-CChH---HHHhHHHHHHHHHhcCHHHHHhhccCCCcc-HHHHHHHHHHHcCC-----ccchhHHHHHhHHHHH
Confidence 221 10 1111 11112233443333200000 022223222 45667777766553 344444444444
Q ss_pred HHHHhchhhHHhHHHHHHHHHHHHhcCCC
Q psy6178 650 AIRCVGKDFAHLLEPLVKQIVVLYSKHPH 678 (912)
Q Consensus 650 ~~~~l~~~~~p~l~~l~~~l~~~~~~~~~ 678 (912)
++..+|..++|.+..++..++...++.+.
T Consensus 736 Lit~a~~el~~n~d~IL~Avisrmq~ae~ 764 (1005)
T KOG2274|consen 736 LITHASSELGPNLDQILRAVISRLQQAET 764 (1005)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHhhh
Confidence 45556778888888888888777766553
No 50
>KOG1242|consensus
Probab=95.29 E-value=6.7 Score=44.31 Aligned_cols=259 Identities=13% Similarity=0.079 Sum_probs=139.1
Q ss_pred HHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcC--c
Q psy6178 399 CFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKH--P 476 (912)
Q Consensus 399 ~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~--p 476 (912)
++..+...+. .-.+....|+++++..+....+...-++++..+++.++.--.+..+.||.++...+-..-..+..+ +
T Consensus 175 ~l~~l~~ai~-dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK 253 (569)
T KOG1242|consen 175 FLDNLSKAII-DKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK 253 (569)
T ss_pred HHHHHHHHhc-ccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh
Confidence 4444444333 223455678999999988888877677888888877654433456889988887776655555333 3
Q ss_pred CcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHH
Q psy6178 477 HTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQ 556 (912)
Q Consensus 477 ~~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~ 556 (912)
.++++.+.-+...-= +-..++...+..+......++.-.++.++..+..... ....+.|..-++++-.+.+...+.+
T Consensus 254 ~llpsll~~l~~~kW--rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~-DT~~evr~a~~~~l~~~~svidN~d 330 (569)
T KOG1242|consen 254 LLLPSLLGSLLEAKW--RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW-DTKPEVRKAGIETLLKFGSVIDNPD 330 (569)
T ss_pred HhhhhhHHHHHHHhh--hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc-cCCHHHHHHHHHHHHHHHHhhccHH
Confidence 556665555554300 1234455555544444445677777777777654432 1356677777777666666555444
Q ss_pred HHHHHHHHHHHhHH---HHHHHHHhcCCCCCCCCCChHHHHHHHHHH-hhhcCCCcC-----------------CCCCCh
Q psy6178 557 ISEALKQLCLVQVK---PLCELIEKQIKPEKNKKSDPVIWLDRLAAI-FKHTSPRIM-----------------SEPHPC 615 (912)
Q Consensus 557 ~~~~l~~l~~p~~~---~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~l~~~~~-----------------~~~~~~ 615 (912)
+..++..+++-+-. ....++..-... .-....-...++.+.-+ -|++..+.. .++.-+
T Consensus 331 I~~~ip~Lld~l~dp~~~~~e~~~~L~~t-tFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~l 409 (569)
T KOG1242|consen 331 IQKIIPTLLDALADPSCYTPECLDSLGAT-TFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDL 409 (569)
T ss_pred HHHHHHHHHHHhcCcccchHHHHHhhcce-eeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHH
Confidence 33332222221110 000111100000 00000000112222211 112211110 123335
Q ss_pred HHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhHHH
Q psy6178 616 QGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEP 664 (912)
Q Consensus 616 ~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~ 664 (912)
.+++.+++|-+...+..- .+++++-+-+.+..+++.+|+...+.+-|
T Consensus 410 apfl~~Llp~lk~~~~d~--~PEvR~vaarAL~~l~e~~g~~~f~d~~p 456 (569)
T KOG1242|consen 410 APFLPSLLPGLKENLDDA--VPEVRAVAARALGALLERLGEVSFDDLIP 456 (569)
T ss_pred hhhHHHHhhHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhhccccccc
Confidence 677888888888766543 79999999999999999888765444433
No 51
>PTZ00429 beta-adaptin; Provisional
Probab=95.23 E-value=9.6 Score=45.71 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=63.0
Q ss_pred CcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHH--HHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhh
Q psy6178 437 DVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLE--TILNFLLHCLQQ--PGLASVTANALQSISTACCT 512 (912)
Q Consensus 437 ~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~--~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~~ 512 (912)
+.++.++..+.+.-.+.+|.||+++..++.+... .+|+.+. ..++.+...+.+ |.|...|..+|..+++.+..
T Consensus 136 ~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~---~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~ 212 (746)
T PTZ00429 136 SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFH---DDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE 212 (746)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh---hCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch
Confidence 3455555555555556799999999999988643 3455432 234444444555 55999999999999987654
Q ss_pred hhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q psy6178 513 HMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAI 547 (912)
Q Consensus 513 ~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~ 547 (912)
.+....+.+...+..+.. .+.=.+..+++.+..
T Consensus 213 ~l~l~~~~~~~Ll~~L~e--~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 213 KIESSNEWVNRLVYHLPE--CNEWGQLYILELLAA 245 (746)
T ss_pred hhHHHHHHHHHHHHHhhc--CChHHHHHHHHHHHh
Confidence 432222222222222221 222256777777754
No 52
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.94 E-value=0.29 Score=49.94 Aligned_cols=138 Identities=21% Similarity=0.240 Sum_probs=83.2
Q ss_pred CCCCccchhHHHHHHHHhhccc-CCCC-cCc---HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcC-cCcHHHHH
Q psy6178 410 NNVMWEQTEAALYIMQSVAKNV-LPEE-NDV---VPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKH-PHTLETIL 483 (912)
Q Consensus 410 ~~~~w~~~Ea~L~~l~~iae~~-~~~~-~~~---l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~-p~~l~~~l 483 (912)
.+.+|.....++--+..+..+- +... ..+ +..++..+...-.+....|..++|.+++.++..+..+ ..++..++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 6788999999998888888764 1111 111 2222233333333445679999999999999998876 34677888
Q ss_pred HHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHH-HHHHHHhhhcCCChHHHHHHHHHHHHHHhcCC
Q psy6178 484 NFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGL-LQIIQCLDTLSISNDAAIGLLKGVAIIVSDMP 553 (912)
Q Consensus 484 ~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~l-l~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p 553 (912)
+.++..+.++. ++.+|..++..+++.|. +.+.+ ...+...... -+...|..+.+.+..++...+
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKS-KNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcc
Confidence 88888888764 88899999999999877 11122 2222222221 245678899999999998877
No 53
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.83 E-value=0.024 Score=50.85 Aligned_cols=104 Identities=14% Similarity=0.150 Sum_probs=67.8
Q ss_pred HHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 399 CFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 399 ~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
.++.+.+.+. +.+|..++.++.++..++...++. ....++.+++.+. +.++.++..++++++.++..-.
T Consensus 8 ~i~~l~~~l~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 8 GLPALVSLLS--SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK----SEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred ChHHHHHHHH--cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh----CCCHHHHHHHHHHHHHHccCcH
Confidence 3445555554 345888999999999999874322 1245555555543 3478999999999999875432
Q ss_pred cCcCc-H-HHHHHHHHHhcCCC--ChHHHHHHHHHHHHH
Q psy6178 474 KHPHT-L-ETILNFLLHCLQQP--GLASVTANALQSIST 508 (912)
Q Consensus 474 ~~p~~-l-~~~l~~l~~~l~~~--~v~~~A~~al~~l~~ 508 (912)
..++. . ..+++.+...+.++ +++..|+.+|.++|+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 21111 1 12455555556554 488999999998874
No 54
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.70 E-value=5.5 Score=44.54 Aligned_cols=283 Identities=11% Similarity=0.130 Sum_probs=139.9
Q ss_pred CcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhh---cCCC-hHHHHHHHHHHHHHHh
Q psy6178 477 HTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDT---LSIS-NDAAIGLLKGVAIIVS 550 (912)
Q Consensus 477 ~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~---~~~~-~~~~~~l~eai~~vi~ 550 (912)
.++..++..++..+..+. =-...-+++++++..++..+.|+.+.+++.+..+.. .+-+ +.-..+++|++|.++.
T Consensus 22 p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir 101 (435)
T PF03378_consen 22 PFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIR 101 (435)
T ss_dssp CCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHH
Confidence 456777777877765432 134566788999988888999998888887764322 1222 3346899999999998
Q ss_pred cCCHH--HHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHH
Q psy6178 551 DMPQD--QISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSK 628 (912)
Q Consensus 551 ~~p~~--~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 628 (912)
..... +....++..+-|.+ ..+++++. ..-.--.++.++.+.+.-.. .+..+....++|.+..
T Consensus 102 ~~~~~~~~~v~~~E~~L~P~f---~~ILq~dV------~EF~PYvfQIla~Lle~~~~------~~~p~~y~~L~~~Ll~ 166 (435)
T PF03378_consen 102 FVCEADPEAVSQFEEALFPPF---QEILQQDV------QEFIPYVFQILAQLLELRPS------SPLPDAYKQLFPPLLS 166 (435)
T ss_dssp HS-GGGHH---HHHHHHHHHH---HHHHHTT-------TTTHHHHHHHHHHHHHHSS--------S--TTTGGGHHHHTS
T ss_pred hccCCChhHHHHHHHHHHHHH---HHHHHHHH------HHHHHHHHHHHHHHHHcCCC------CCCcHHHHHHHHHHcC
Confidence 75532 23334444444444 56666552 11222356777877776441 1222223444443332
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHhchhh--HHhHHHHHHHHHHHHh-cCCCcchHHhHHHHHHHhcCccchHHHHHHH
Q psy6178 629 TCETYQQDARVMEHSSRCLRYAIRCVGKDF--AHLLEPLVKQIVVLYS-KHPHSSFLYLGSILVDEYATSHCVSGLLDMV 705 (912)
Q Consensus 629 ~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~--~p~l~~l~~~l~~~~~-~~~~~~~L~~~~~lv~~~g~~~~~~~l~~l~ 705 (912)
- ..|....- +-++.++++..++.-...+ .+.+.+++...-.... +.......+++..++..+..+.+.+.+.+++
T Consensus 167 p-~lWe~~gn-iPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl~~I~ 244 (435)
T PF03378_consen 167 P-ALWERRGN-IPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPEALEPYLKQIF 244 (435)
T ss_dssp G-GGGGSTTT-HHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGHHHHH
T ss_pred c-chhccCCC-cCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 1 23433222 2445555555555443333 2344554443322211 1222334578888887764433455565555
Q ss_pred HHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHH-HhCCcccc------CchhhHHHHHH-HHHhcc-cCCchhHHHHH
Q psy6178 706 QAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFL-QRAPIAFL------TSSFISSVMQC-GILATH-LDHREANSTVM 776 (912)
Q Consensus 706 ~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l-~~~p~~~l------~~~~l~~i~~~-~~~~l~-~~~~~~~~~~~ 776 (912)
.-+ ++.|++. ..+..++.|..+++-+. +++|..++ +.+++..++.- .+..+. .....--|.+.
T Consensus 245 ~ll----l~RLq~s----kT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~ 316 (435)
T PF03378_consen 245 TLL----LTRLQSS----KTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICA 316 (435)
T ss_dssp HHH----HHHHHHC------HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHH
T ss_pred HHH----HHHHhhC----CcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHH
Confidence 444 3444431 22456677766655554 44455543 23344444431 122222 12222335555
Q ss_pred HHHHHHhh
Q psy6178 777 KFFYDLIH 784 (912)
Q Consensus 777 ~fl~~li~ 784 (912)
--+++++.
T Consensus 317 vGltkLL~ 324 (435)
T PF03378_consen 317 VGLTKLLC 324 (435)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55666664
No 55
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.09 E-value=0.035 Score=41.81 Aligned_cols=52 Identities=27% Similarity=0.259 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-cCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHH
Q psy6178 455 IAVRYTSLLLLGELCEWIDKH-PHTLETILNFLLHCLQQPG--LASVTANALQSI 506 (912)
Q Consensus 455 ~~v~~t~~~~lg~y~~~l~~~-p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l 506 (912)
|.||..+++.||+.+.-.... ..+++.+++.+...+.|++ |+..|+.||.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 679999999999744211110 2378889999999998765 999999998754
No 56
>KOG2956|consensus
Probab=94.06 E-value=3.1 Score=45.17 Aligned_cols=172 Identities=13% Similarity=0.184 Sum_probs=101.6
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHhhhhhhhcHHHHHHH-HHHhhhcCCChHHHH
Q psy6178 464 LLGELCEWIDKHPHTLETILNFLLHCLQQP---GLASVTANALQSISTACCTHMVGHFNGLLQI-IQCLDTLSISNDAAI 539 (912)
Q Consensus 464 ~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~---~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~-~~~l~~~~~~~~~~~ 539 (912)
+-|.++-|= ++...+|..++.-+++. .....|-+.|++.|+.-.+.|..+.+--+.. ++...+. ..+...
T Consensus 316 ~e~sfsvWe----q~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds--~~~v~~ 389 (516)
T KOG2956|consen 316 CEGSFSVWE----QHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDS--QDEVMR 389 (516)
T ss_pred HccchhHHH----HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCC--chhHHH
Confidence 446666674 35556666666667662 2566677777777777666666555443332 2222221 122223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHH
Q psy6178 540 GLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVI 619 (912)
Q Consensus 540 ~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~ 619 (912)
..-|+...+++..-+...... +.|++ ... +. ......+.++..+|+.+.. +-+..++
T Consensus 390 ~Aeed~~~~las~~P~~~I~~----i~~~I-------lt~---D~---~~~~~~iKm~Tkl~e~l~~------EeL~~ll 446 (516)
T KOG2956|consen 390 VAEEDCLTTLASHLPLQCIVN----ISPLI-------LTA---DE---PRAVAVIKMLTKLFERLSA------EELLNLL 446 (516)
T ss_pred HHHHHHHHHHHhhCchhHHHH----HhhHH-------hcC---cc---hHHHHHHHHHHHHHhhcCH------HHHHHhh
Confidence 344444445444333322211 22222 111 11 1224578899999998864 3355667
Q ss_pred HhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhc-hhhHHhHHHHH
Q psy6178 620 TELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVG-KDFAHLLEPLV 666 (912)
Q Consensus 620 ~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~-~~~~p~l~~l~ 666 (912)
..+.|.+.+..+ ..++.|+..+..|+-.++..+| +.+.|+|.++-
T Consensus 447 ~diaP~~iqay~--S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt 492 (516)
T KOG2956|consen 447 PDIAPCVIQAYD--STSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLT 492 (516)
T ss_pred hhhhhHHHHHhc--CchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhcc
Confidence 788887666544 2467788999999999999999 88999998765
No 57
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.32 E-value=19 Score=41.50 Aligned_cols=304 Identities=15% Similarity=0.132 Sum_probs=146.1
Q ss_pred CCCccchhHHHHHHHHhhcccCC-----CCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHH---
Q psy6178 411 NVMWEQTEAALYIMQSVAKNVLP-----EENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETI--- 482 (912)
Q Consensus 411 ~~~w~~~Ea~L~~l~~iae~~~~-----~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~--- 482 (912)
+++-..++.++..++.+++.-.. .+.+.++.++..+ .+++..|...+..++...+. ++..+..+
T Consensus 88 h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L----~~~d~~Va~~A~~~L~~l~~----~~~~~~~l~~~ 159 (503)
T PF10508_consen 88 HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL----RDPDLSVAKAAIKALKKLAS----HPEGLEQLFDS 159 (503)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH----cCCcHHHHHHHHHHHHHHhC----CchhHHHHhCc
Confidence 33445566777777666543211 1234455555444 23467888888888887664 44444444
Q ss_pred --HHHHHHhcCCC--ChHHHHHHHHHHHHHHhhhhhhhcHH--HHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHH
Q psy6178 483 --LNFLLHCLQQP--GLASVTANALQSISTACCTHMVGHFN--GLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQ 556 (912)
Q Consensus 483 --l~~l~~~l~~~--~v~~~A~~al~~l~~~~~~~L~~~~~--~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~ 556 (912)
+..+...+..+ .++.++...+.+++......+ .+.. ++++.+..-... -+.-.+..+++-++.++.. + .
T Consensus 160 ~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~-~--~ 234 (503)
T PF10508_consen 160 NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAET-P--H 234 (503)
T ss_pred chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcC-h--h
Confidence 44455545552 377777777777775544322 2211 244443321111 1222578889988888772 2 2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHH-Hh-hc
Q psy6178 557 ISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTC-ET-YQ 634 (912)
Q Consensus 557 ~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~-~~ 634 (912)
-..++.+ .-++.++...+.....+.....-.+...+...|.++.. .+ . .+ -...|.+...+ .. -.
T Consensus 235 g~~yL~~--~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~--------~-~v-~~~~p~~~~~l~~~~~s 301 (503)
T PF10508_consen 235 GLQYLEQ--QGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SP--------Q-EV-LELYPAFLERLFSMLES 301 (503)
T ss_pred HHHHHHh--CCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-Ch--------H-HH-HHHHHHHHHHHHHHhCC
Confidence 2334443 34566666666554211100011122334445555443 21 1 11 22234433322 22 24
Q ss_pred cchhHHHHHHHHHHHHHHHh-chhhH-----HhHHHHHHHHHHHHhcCCC---cchHHhHHHHHHHhcC---ccchHHHH
Q psy6178 635 QDARVMEHSSRCLRYAIRCV-GKDFA-----HLLEPLVKQIVVLYSKHPH---SSFLYLGSILVDEYAT---SHCVSGLL 702 (912)
Q Consensus 635 ~~~~v~e~~~~~~~~~~~~l-~~~~~-----p~l~~l~~~l~~~~~~~~~---~~~L~~~~~lv~~~g~---~~~~~~l~ 702 (912)
.|+..++.+...++.+-.+. |.... +-+..++..+.......+. ...|...+.+...... +++.....
T Consensus 302 ~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~ 381 (503)
T PF10508_consen 302 QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITE 381 (503)
T ss_pred CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 67888888888888765442 22222 2222233322222222221 1234444444322211 11222222
Q ss_pred HHHHHHhHH-----HHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCc
Q psy6178 703 DMVQAFLPP-----TYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPI 745 (912)
Q Consensus 703 ~l~~~l~~~-----~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~ 745 (912)
..|+.+.+. .+..+++ ..||+..+.|+++..++.+-|.
T Consensus 382 ~w~~~~~~~~~~~~l~~~~~q-----PF~elr~a~~~~l~~l~~~~Wg 424 (503)
T PF10508_consen 382 SWYESLSGSPLSNLLMSLLKQ-----PFPELRCAAYRLLQALAAQPWG 424 (503)
T ss_pred HHHHHhcCCchHHHHHHHhcC-----CchHHHHHHHHHHHHHhcCHHH
Confidence 333332221 1122222 3589999999999988876553
No 58
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.23 E-value=2.2 Score=44.12 Aligned_cols=230 Identities=16% Similarity=0.178 Sum_probs=120.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcC---cCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHH-
Q psy6178 452 STHIAVRYTSLLLLGELCEWIDKH---PHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQC- 527 (912)
Q Consensus 452 ~~~~~v~~t~~~~lg~y~~~l~~~---p~~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~- 527 (912)
+.++.+|..++.+++..-+-+... .+-...+++|+.+.+.|......|..++..+. .++..-......+++.+..
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~-~~~~~~~~~~~~i~~~l~~~ 88 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALV-KMKNFSPESAVKILRSLFQN 88 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH-hCcCCChhhHHHHHHHHHHh
Confidence 357889999998888776665432 35577888999999988776666688888887 3333222234445554432
Q ss_pred hhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCC
Q psy6178 528 LDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPR 607 (912)
Q Consensus 528 l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~ 607 (912)
.........+|..+++-+-.++..-. ..+..+-...+..+-+.++.+.+|.+ +....+.+..+.+....
T Consensus 89 ~~~q~~~q~~R~~~~~ll~~l~~~~~-----~~l~~~~~~fv~~~i~~~~gEkDPRn-----Ll~~F~l~~~i~~~~~~- 157 (262)
T PF14500_consen 89 VDVQSLPQSTRYAVYQLLDSLLENHR-----EALQSMGDDFVYGFIQLIDGEKDPRN-----LLLSFKLLKVILQEFDI- 157 (262)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHhH-----HHHHhchhHHHHHHHHHhccCCCHHH-----HHHHHHHHHHHHHhccc-
Confidence 21122345578888887777766532 23344445555555566655532221 23344555555554432
Q ss_pred cCCCCCChHHHHHhHhHHHHHHHH----hhccch--hHHHHHHHHHHHHHHHhchhhHHhHHH-HHHHHHHHHhcCCCcc
Q psy6178 608 IMSEPHPCQGVITELWPVLSKTCE----TYQQDA--RVMEHSSRCLRYAIRCVGKDFAHLLEP-LVKQIVVLYSKHPHSS 680 (912)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~~--~v~e~~~~~~~~~~~~l~~~~~p~l~~-l~~~l~~~~~~~~~~~ 680 (912)
.+..++++.++.--.- .-++|+ ...|..-..++.++.+ ...++|+..| +++.+.+.... --..
T Consensus 158 --------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s-~~~fa~~~~p~LleKL~s~~~~-~K~D 227 (262)
T PF14500_consen 158 --------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS-TPLFAPFAFPLLLEKLDSTSPS-VKLD 227 (262)
T ss_pred --------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-cHhhHHHHHHHHHHHHcCCCcH-HHHH
Confidence 2233444443332211 112343 2344555555554442 2345665433 33444322111 1123
Q ss_pred hHHhHHHHHHHhcCccchHHHHH
Q psy6178 681 FLYLGSILVDEYATSHCVSGLLD 703 (912)
Q Consensus 681 ~L~~~~~lv~~~g~~~~~~~l~~ 703 (912)
-|..+..++..||...+.+....
T Consensus 228 ~L~tL~~c~~~y~~~~~~~~~~~ 250 (262)
T PF14500_consen 228 SLQTLKACIENYGADSLSPHWST 250 (262)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHH
Confidence 45667777888876333333333
No 59
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=93.10 E-value=16 Score=40.00 Aligned_cols=125 Identities=19% Similarity=0.261 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCCCcch------HHhHHHHHHHhcC--ccch--HHHHHHHHHH
Q psy6178 639 VMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSF------LYLGSILVDEYAT--SHCV--SGLLDMVQAF 708 (912)
Q Consensus 639 v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~------L~~~~~lv~~~g~--~~~~--~~l~~l~~~l 708 (912)
-+.++|.+++.+.+..++.+.+.+...++.+++.|...+...| +++.+.+..+-.. ..+. +.+.++..-+
T Consensus 227 rR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff 306 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFF 306 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHH
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHH
Confidence 4678999999999988988999999999999998887776543 5555555432211 0111 1122333334
Q ss_pred hHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccCchhhHHHHHHHHHhcccCCch
Q psy6178 709 LPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHRE 770 (912)
Q Consensus 709 ~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~~~l~~i~~~~~~~l~~~~~~ 770 (912)
.++++.-|+ + +...+|=+..+.+.++..+-.. ++.+.+..+++..+.++..++.-
T Consensus 307 ~~~v~peL~-~-~~~~~piLka~aik~~~~Fr~~-----l~~~~l~~~~~~l~~~L~~~~~v 361 (370)
T PF08506_consen 307 SQHVLPELQ-P-DVNSHPILKADAIKFLYTFRNQ-----LPKEQLLQIFPLLVNHLQSSSYV 361 (370)
T ss_dssp HHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGG-----S-HHHHHHHHHHHHHHTTSS-HH
T ss_pred HHHhHHHhc-c-cCCCCcchHHHHHHHHHHHHhh-----CCHHHHHHHHHHHHHHhCCCCcc
Confidence 455555555 2 4567787888888888877544 34556777888888888866543
No 60
>KOG0166|consensus
Probab=93.00 E-value=1 Score=50.24 Aligned_cols=213 Identities=16% Similarity=0.235 Sum_probs=120.4
Q ss_pred ccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCc--CcHHHHHHHH
Q psy6178 414 WEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHP--HTLETILNFL 486 (912)
Q Consensus 414 w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p--~~l~~~l~~l 486 (912)
-...|=|.++++.|+...+.- ....+..++.++.. ...-...+.+.|+++.+|+--...| +.+.++|+.+
T Consensus 166 ~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~---~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L 242 (514)
T KOG0166|consen 166 ADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK---SDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPAL 242 (514)
T ss_pred HHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc---ccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 334688999999988764321 12334444444321 1123577888999999887654445 4688999999
Q ss_pred HHhcCCC--ChHHHHHHHHHHHHHHhhhhh--h---hcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHH
Q psy6178 487 LHCLQQP--GLASVTANALQSISTACCTHM--V---GHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISE 559 (912)
Q Consensus 487 ~~~l~~~--~v~~~A~~al~~l~~~~~~~L--~---~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~ 559 (912)
...+++. +|..-||+|+..+.+.--..+ + ...+.++..+.. .+...+.-.+.++|.|+... +++...
T Consensus 243 ~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~-----~~~~v~~PaLRaiGNIvtG~-d~QTq~ 316 (514)
T KOG0166|consen 243 LRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH-----SSPKVVTPALRAIGNIVTGS-DEQTQV 316 (514)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC-----CCcccccHHHhhccceeecc-HHHHHH
Confidence 9888764 488999999999986533221 1 233444444331 12223456888999976653 233332
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHH-HHHhHhHHHHHHHHhhccchh
Q psy6178 560 ALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQG-VITELWPVLSKTCETYQQDAR 638 (912)
Q Consensus 560 ~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~ 638 (912)
.+. ...+..|..++... +.+..+..... .++.+..|-.. .... +-..++|.+..+++. .+.+
T Consensus 317 vi~---~~~L~~l~~ll~~s--~~~~ikkEAcW---~iSNItAG~~~-------qiqaVida~l~p~Li~~l~~--~ef~ 379 (514)
T KOG0166|consen 317 VIN---SGALPVLSNLLSSS--PKESIKKEACW---TISNITAGNQE-------QIQAVIDANLIPVLINLLQT--AEFD 379 (514)
T ss_pred HHh---cChHHHHHHHhccC--cchhHHHHHHH---HHHHhhcCCHH-------HHHHHHHcccHHHHHHHHhc--cchH
Confidence 322 33344444555432 12211222222 24444443221 1111 223667888887775 3567
Q ss_pred HHHHHHHHHHHHHH
Q psy6178 639 VMEHSSRCLRYAIR 652 (912)
Q Consensus 639 v~e~~~~~~~~~~~ 652 (912)
+.-.++.++..+..
T Consensus 380 ~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 380 IRKEAAWAISNLTS 393 (514)
T ss_pred HHHHHHHHHHhhcc
Confidence 77777877776644
No 61
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=92.53 E-value=8.3 Score=39.12 Aligned_cols=185 Identities=15% Similarity=0.120 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHHHHHHH--hcCc----CcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHH
Q psy6178 454 HIAVRYTSLLLLGELCEWI--DKHP----HTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQII 525 (912)
Q Consensus 454 ~~~v~~t~~~~lg~y~~~l--~~~p----~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~ 525 (912)
+-.-|..++.-+.++...- ..++ +.+..++..+...+.+.+ |...|+..+..++..++..+.|+++.++..+
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 4455666666666555543 1112 123334456666676644 8899999999999999999999999999887
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhc
Q psy6178 526 QCLDTLSISNDAAIGLLKGVAIIVSDMP-QDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHT 604 (912)
Q Consensus 526 ~~l~~~~~~~~~~~~l~eai~~vi~~~p-~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l 604 (912)
...... -..-.+....+++..++...+ ... ++.+.+ ...... ++ .......+..+..++...
T Consensus 100 l~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~~-------~~~~~l---~~~~~~-----Kn-~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 100 LKKLGD-SKKFIREAANNALDAIIESCSYSPK-------ILLEIL---SQGLKS-----KN-PQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHGGG----HHHHHHHHHHHHHHHTTS-H--H-------HHHHHH---HHHTT------S--HHHHHHHHHHHHHHHTT-
T ss_pred HHHHcc-ccHHHHHHHHHHHHHHHHHCCcHHH-------HHHHHH---HHHHhC-----CC-HHHHHHHHHHHHHHHHHc
Confidence 654332 122356778888888888776 221 111111 111111 11 111233566666666655
Q ss_pred CCCcCCCCCChH--HHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHh
Q psy6178 605 SPRIMSEPHPCQ--GVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHL 661 (912)
Q Consensus 605 ~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~ 661 (912)
+... ..+. ..+..+.+.+...+. ..+++|++.+..++..+...+|+...-+
T Consensus 163 ~~~~----~~l~~~~~~~~l~~~l~~~l~--D~~~~VR~~Ar~~~~~l~~~~~~~a~~~ 215 (228)
T PF12348_consen 163 GSDS----SVLQKSAFLKQLVKALVKLLS--DADPEVREAARECLWALYSHFPERAESI 215 (228)
T ss_dssp --------GGG--HHHHHHHHHHHHHHHT--SS-HHHHHHHHHHHHHHHHHH-HHH---
T ss_pred cchH----hhhcccchHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHCCHhhccc
Confidence 5110 1111 123445555444433 3579999999999999888777654333
No 62
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.51 E-value=0.18 Score=32.62 Aligned_cols=29 Identities=31% Similarity=0.620 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCCC--hHHHHHHHHHHHHHHh
Q psy6178 482 ILNFLLHCLQQPG--LASVTANALQSISTAC 510 (912)
Q Consensus 482 ~l~~l~~~l~~~~--v~~~A~~al~~l~~~~ 510 (912)
+++.+++.+.||+ |+..|+++|..+++.|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 3566666677654 7777777777777654
No 63
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=92.13 E-value=1.1 Score=46.28 Aligned_cols=212 Identities=13% Similarity=0.154 Sum_probs=112.9
Q ss_pred CccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh---c---CcCcHHH
Q psy6178 413 MWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID---K---HPHTLET 481 (912)
Q Consensus 413 ~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~---~---~p~~l~~ 481 (912)
+..+.||+ +++..++.+-... +...+|.++++|.. +...||..+.|.+|..+.--. . .-..|.+
T Consensus 129 ~mlqfEAa-WalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s----~~~~V~eQavWALGNiAGDS~~~RD~vL~~galep 203 (526)
T COG5064 129 DMLQFEAA-WALTNIASGTTQQTKVVVDAGAVPLFIQLLSS----TEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEP 203 (526)
T ss_pred hHHHHHHH-HHHhhhccCcccceEEEEeCCchHHHHHHHcC----chHHHHHHHHHHhccccCCchhHHHHHHhcCchHH
Confidence 34456775 6788888886543 34678888887643 367899999999987552111 1 1245788
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHH---HHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHH
Q psy6178 482 ILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQII---QCLDTLSISNDAAIGLLKGVAIIVSDMPQDQIS 558 (912)
Q Consensus 482 ~l~~l~~~l~~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~---~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~ 558 (912)
+|..+.+.-.+-.+.+.|.+.|.++|+.-.+ .|....+-+.+ .++... .+.+.....+=||+++... |.|...
T Consensus 204 lL~ll~ss~~~ismlRn~TWtLSNlcRGknP--~P~w~~isqalpiL~KLiys-~D~evlvDA~WAiSYlsDg-~~E~i~ 279 (526)
T COG5064 204 LLGLLLSSAIHISMLRNATWTLSNLCRGKNP--PPDWSNISQALPILAKLIYS-RDPEVLVDACWAISYLSDG-PNEKIQ 279 (526)
T ss_pred HHHHHHhccchHHHHHHhHHHHHHhhCCCCC--CCchHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHhccC-cHHHHH
Confidence 8888876444445677889999999976332 23333333332 233221 3455555666677776443 333322
Q ss_pred HHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchh
Q psy6178 559 EALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDAR 638 (912)
Q Consensus 559 ~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 638 (912)
..+. .-+..+|-.++... +.. -....|..+|.++-|-+.. ...+ +---.++.+..+++.- ...
T Consensus 280 avld---~g~~~RLvElLs~~---sa~---iqtPalR~vGNIVTG~D~Q----Tqvi--I~~G~L~a~~~lLs~~--ke~ 342 (526)
T COG5064 280 AVLD---VGIPGRLVELLSHE---SAK---IQTPALRSVGNIVTGSDDQ----TQVI--INCGALKAFRSLLSSP--KEN 342 (526)
T ss_pred HHHh---cCCcHHHHHHhcCc---ccc---ccCHHHHhhcCeeecCccc----eehh--eecccHHHHHHHhcCh--hhh
Confidence 2222 12233444444432 111 1223566677766553321 1110 1111233344444432 235
Q ss_pred HHHHHHHHHHHH
Q psy6178 639 VMEHSSRCLRYA 650 (912)
Q Consensus 639 v~e~~~~~~~~~ 650 (912)
++..+|.-+..+
T Consensus 343 irKEaCWTiSNI 354 (526)
T COG5064 343 IRKEACWTISNI 354 (526)
T ss_pred hhhhhheeeccc
Confidence 667777666554
No 64
>KOG0168|consensus
Probab=92.08 E-value=30 Score=40.78 Aligned_cols=149 Identities=19% Similarity=0.183 Sum_probs=86.2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhh---hh--cHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHH
Q psy6178 482 ILNFLLHCLQQPGLASVTANALQSISTACCTHM---VG--HFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQ 556 (912)
Q Consensus 482 ~l~~l~~~l~~~~v~~~A~~al~~l~~~~~~~L---~~--~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~ 556 (912)
+|-.|++.=+++++...||+|+..+|+.|.... +. -+|-|++.+..+.- .+..+..++|+-.|.+.-|.+-
T Consensus 215 ~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Iey----iDvAEQ~LqALE~iSR~H~~Ai 290 (1051)
T KOG0168|consen 215 VLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEY----IDVAEQSLQALEKISRRHPKAI 290 (1051)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhh----hHHHHHHHHHHHHHHhhccHHH
Confidence 333333333346799999999999999987642 33 35666666654332 1235566777777666655332
Q ss_pred H-HHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhcc
Q psy6178 557 I-SEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQ 635 (912)
Q Consensus 557 ~-~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 635 (912)
. ...+..++ ..++-+.-.++. .+|...+.+.+.+.+. +.| ++-+..|++..+++. .
T Consensus 291 L~AG~l~a~L-sylDFFSi~aQR-------------~AlaiaaN~Cksi~sd---~f~----~v~ealPlL~~lLs~--~ 347 (1051)
T KOG0168|consen 291 LQAGALSAVL-SYLDFFSIHAQR-------------VALAIAANCCKSIRSD---EFH----FVMEALPLLTPLLSY--Q 347 (1051)
T ss_pred HhcccHHHHH-HHHHHHHHHHHH-------------HHHHHHHHHHhcCCCc---cch----HHHHHHHHHHHHHhh--c
Confidence 1 11111111 111111111111 1455566667766653 223 345677999988875 5
Q ss_pred chhHHHHHHHHHHHHHHHhchh
Q psy6178 636 DARVMEHSSRCLRYAIRCVGKD 657 (912)
Q Consensus 636 ~~~v~e~~~~~~~~~~~~l~~~ 657 (912)
|...+|.+|-|+.+++..+-.+
T Consensus 348 D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 348 DKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred cchhHHHHHHHHHHHHHhcccC
Confidence 7778999999999998876443
No 65
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=92.02 E-value=7.4 Score=40.02 Aligned_cols=231 Identities=14% Similarity=0.107 Sum_probs=119.1
Q ss_pred cCcHHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHH--HHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Q psy6178 394 VGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPK--VVEAILHLPPSTHIAVRYTSLLLLGELCEW 471 (912)
Q Consensus 394 l~~~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~--l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~ 471 (912)
++++ -++.+...|+... +--..|.++++++..+.. +. ..+.+.. .++.+..+..+++|.+|..+++++...+.-
T Consensus 9 l~~~-~l~~Ll~lL~~t~-dp~i~e~al~al~n~aaf-~~-nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 9 LEAQ-ELQKLLCLLESTE-DPFIQEKALIALGNSAAF-PF-NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN 84 (254)
T ss_pred cCHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHhhccC-hh-HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence 3443 4566666665332 233368888888876553 21 1122221 122333333346899999999988766543
Q ss_pred HhcC---cCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH--hhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q psy6178 472 IDKH---PHTLETILNFLLHCLQQPGLASVTANALQSISTA--CCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVA 546 (912)
Q Consensus 472 l~~~---p~~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~--~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~ 546 (912)
-.+. ..|+..+..-+.+.--+..++.++-++|.+++-. ....+.++++.++..+. .+ +...+..++..+.
T Consensus 85 ~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~---~G--~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 85 DENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLS---SG--SEKTKVQVLKVLV 159 (254)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHH---cC--ChHHHHHHHHHHH
Confidence 2221 2456666666665444556888899999988633 33456778887765443 22 3345677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcC------CCCCChHHHHH
Q psy6178 547 IIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIM------SEPHPCQGVIT 620 (912)
Q Consensus 547 ~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~------~~~~~~~~~~~ 620 (912)
.+... | +-....+. .-....+..+.+... + +..+...|-.+..+.++++.+.. ...+++..++.
T Consensus 160 nLS~n-p-~~~~~Ll~---~q~~~~~~~Lf~~~~--~---~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~ 229 (254)
T PF04826_consen 160 NLSEN-P-DMTRELLS---AQVLSSFLSLFNSSE--S---KENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFG 229 (254)
T ss_pred HhccC-H-HHHHHHHh---ccchhHHHHHHccCC--c---cHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHc
Confidence 76543 1 21111111 112233333443321 1 12223344444555455444321 22344444555
Q ss_pred hHhHHHHHHHHh-hccchhHHHHH
Q psy6178 621 ELWPVLSKTCET-YQQDARVMEHS 643 (912)
Q Consensus 621 ~~~~~l~~~l~~-~~~~~~v~e~~ 643 (912)
+.=...+++... .+.|++|.+++
T Consensus 230 e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 230 ESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred cHHHHHHHHHHHHcCCCHHHhhhc
Confidence 544444444443 34678887654
No 66
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=91.53 E-value=3.2 Score=36.05 Aligned_cols=91 Identities=9% Similarity=0.137 Sum_probs=69.4
Q ss_pred cHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhc
Q psy6178 478 TLETILNFLLHCLQQPG------LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSD 551 (912)
Q Consensus 478 ~l~~~l~~l~~~l~~~~------v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~ 551 (912)
++..+++.+-..++|++ -+.++-+|+..+.+-++.++....|+++..++..... ++-+...+++-...+..
T Consensus 8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~---~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI---PELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHHHh
Confidence 34556666666666643 3678999999999999999999999999998864432 34578899999999999
Q ss_pred CCHHHHHHHHHHHHHHhHHH
Q psy6178 552 MPQDQISEALKQLCLVQVKP 571 (912)
Q Consensus 552 ~p~~~~~~~l~~l~~p~~~~ 571 (912)
++.++..+.+.+.+.-+++.
T Consensus 85 L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 85 LKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99877666666666555543
No 67
>KOG1059|consensus
Probab=91.38 E-value=14 Score=42.45 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=63.3
Q ss_pred hHHHHHHHHhhcccCCCC-cCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--
Q psy6178 418 EAALYIMQSVAKNVLPEE-NDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG-- 494 (912)
Q Consensus 418 Ea~L~~l~~iae~~~~~~-~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~-- 494 (912)
|+++ +|+.++--+.++- .+.-+.+|.++. ++.|.+|..++.++.+ -|-..|+.+.+.++.+...|.+|+
T Consensus 125 e~gi-AL~GLS~fvTpdLARDLa~Dv~tLL~----sskpYvRKkAIl~lyk---vFLkYPeAlr~~FprL~EkLeDpDp~ 196 (877)
T KOG1059|consen 125 EVGL-ALSGLSCIVTPDLARDLADDVFTLLN----SSKPYVRKKAILLLYK---VFLKYPEALRPCFPRLVEKLEDPDPS 196 (877)
T ss_pred hhhh-eecccccccCchhhHHHHHHHHHHHh----cCchHHHHHHHHHHHH---HHHhhhHhHhhhHHHHHHhccCCCch
Confidence 4443 3444444444432 244555666552 2468999988776654 333569999999999999999865
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhcHHHHHHH
Q psy6178 495 LASVTANALQSISTACCTHMVGHFNGLLQI 524 (912)
Q Consensus 495 v~~~A~~al~~l~~~~~~~L~~~~~~ll~~ 524 (912)
|+++|..-+-.|++.-.+...+..|-|+..
T Consensus 197 V~SAAV~VICELArKnPknyL~LAP~ffkl 226 (877)
T KOG1059|consen 197 VVSAAVSVICELARKNPQNYLQLAPLFYKL 226 (877)
T ss_pred HHHHHHHHHHHHHhhCCcccccccHHHHHH
Confidence 888888777666666555555555555544
No 68
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=91.32 E-value=0.67 Score=38.73 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=52.2
Q ss_pred HHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHH
Q psy6178 402 HMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLET 481 (912)
Q Consensus 402 ~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~ 481 (912)
.+...+. .+.+|.....++++++.+. ..+.++.+++.+ .++++.||..+++.+|++.. + .
T Consensus 3 ~L~~~l~-~~~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~i~~-----~----~ 62 (88)
T PF13646_consen 3 ALLQLLQ-NDPDPQVRAEAARALGELG------DPEAIPALIELL----KDEDPMVRRAAARALGRIGD-----P----E 62 (88)
T ss_dssp HHHHHHH-TSSSHHHHHHHHHHHHCCT------HHHHHHHHHHHH----TSSSHHHHHHHHHHHHCCHH-----H----H
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHcC------CHhHHHHHHHHH----cCCCHHHHHHHHHHHHHhCC-----H----H
Confidence 3444453 4677877788888887332 234455566655 34689999999999998752 3 3
Q ss_pred HHHHHHHhcCCCC---hHHHHHHHH
Q psy6178 482 ILNFLLHCLQQPG---LASVTANAL 503 (912)
Q Consensus 482 ~l~~l~~~l~~~~---v~~~A~~al 503 (912)
+++.+...+.++. ++..|..||
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 4555555565532 677777776
No 69
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=90.94 E-value=1.7 Score=36.28 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHH
Q psy6178 440 PKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSIS 507 (912)
Q Consensus 440 ~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~ 507 (912)
+.+++.+.+ ++++.+|..+++++|++.. + .+++.+...+.+++ |+..|+.++.++-
T Consensus 2 ~~L~~~l~~---~~~~~vr~~a~~~L~~~~~-----~----~~~~~L~~~l~d~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 2 PALLQLLQN---DPDPQVRAEAARALGELGD-----P----EAIPALIELLKDEDPMVRRAAARALGRIG 59 (88)
T ss_dssp HHHHHHHHT---SSSHHHHHHHHHHHHCCTH-----H----HHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHcCC-----H----hHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 455555533 3579999999999996532 2 45666666667654 9999999999873
No 70
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.94 E-value=19 Score=41.26 Aligned_cols=52 Identities=13% Similarity=0.300 Sum_probs=28.8
Q ss_pred HHhHhHHHHHHHHh----hccchhHHHHHHHHHHHHHHHhc--hhhHHhHHHHHHHHH
Q psy6178 619 ITELWPVLSKTCET----YQQDARVMEHSSRCLRYAIRCVG--KDFAHLLEPLVKQIV 670 (912)
Q Consensus 619 ~~~~~~~l~~~l~~----~~~~~~v~e~~~~~~~~~~~~l~--~~~~p~l~~l~~~l~ 670 (912)
.+++.+++..-... ...|++.+++...|++.++..+. .+...|+.-++..++
T Consensus 217 ~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvl 274 (556)
T PF05918_consen 217 RQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVL 274 (556)
T ss_dssp HHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhc
Confidence 45566665544321 23578888999888888765543 333445544444443
No 71
>KOG4653|consensus
Probab=90.88 E-value=19 Score=42.51 Aligned_cols=186 Identities=11% Similarity=0.138 Sum_probs=115.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhcC--c--CcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHH
Q psy6178 453 THIAVRYTSLLLLGELCEWIDKH--P--HTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQ 526 (912)
Q Consensus 453 ~~~~v~~t~~~~lg~y~~~l~~~--p--~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~ 526 (912)
+.+.++..++..+ ++|+.++ . .....++..++..+.|.+ |--.|.+++..+|+.-.+.+. |.+.+.|.
T Consensus 739 ~qvpik~~gL~~l---~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il---~dL~e~Y~ 812 (982)
T KOG4653|consen 739 DQVPIKGYGLQML---RHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDIL---PDLSEEYL 812 (982)
T ss_pred CcccchHHHHHHH---HHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhH---HHHHHHHH
Confidence 3456677766655 5677733 2 345688888888888865 888899999999998555544 44555555
Q ss_pred HhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCC
Q psy6178 527 CLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSP 606 (912)
Q Consensus 527 ~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 606 (912)
.-... ...+.+..+-|+++.++.+..+ ....+..++++.+...+.. |+.. -.+..+..+|.+.+.+..
T Consensus 813 s~k~k-~~~d~~lkVGEai~k~~qa~Ge-----l~~~y~~~Li~tfl~gvre---pd~~---~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 813 SEKKK-LQTDYRLKVGEAILKVAQALGE-----LVFKYKAVLINTFLSGVRE---PDHE---FRASSLANLGQLCQLLAF 880 (982)
T ss_pred hcccC-CCccceehHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHhcCC---chHH---HHHhHHHHHHHHHHHHhh
Confidence 43332 3356788888999999998862 3344444555544444432 3221 123355566666555443
Q ss_pred CcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhHHH
Q psy6178 607 RIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEP 664 (912)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~ 664 (912)
.. ...+-++...+..+.. ..++.-++.++..+++..+.+.|.++.|++-.
T Consensus 881 ~v-------sd~~~ev~~~Il~l~~-~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~ 930 (982)
T KOG4653|consen 881 QV-------SDFFHEVLQLILSLET-TDGSVLVRRAAVHLLAELLNGTGEDLLPILRL 930 (982)
T ss_pred hh-------hHHHHHHHHHHHHHHc-cCCchhhHHHHHHHHHHHHhccchhhHHHHHH
Confidence 21 1123333332223222 24567788999999999999999998886643
No 72
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.81 E-value=4.4 Score=39.28 Aligned_cols=141 Identities=13% Similarity=0.175 Sum_probs=79.8
Q ss_pred HHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCc-CcHHHHHHHHHHhcCCC--ChH
Q psy6178 420 ALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHP-HTLETILNFLLHCLQQP--GLA 496 (912)
Q Consensus 420 ~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p-~~l~~~l~~l~~~l~~~--~v~ 496 (912)
++-+++-++-..+.--+++++.+...| .+++|.||++++.++..... .+. ..=+.++..++..+.|+ +++
T Consensus 8 ~i~~l~DL~~r~~~~ve~~~~~l~~~L----~D~~~~VR~~al~~Ls~Li~---~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 8 AIIALGDLCIRYPNLVEPYLPNLYKCL----RDEDPLVRKTALLVLSHLIL---EDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred HHHHHHHHHHhCcHHHHhHHHHHHHHH----CCCCHHHHHHHHHHHHHHHH---cCceeehhhhhHHHHHHHcCCCHHHH
Confidence 344455444444322234455555443 45689999999999877543 221 11233345555666765 499
Q ss_pred HHHHHHHHHHHHH-hhhhhhhcHHHHHHHHHHhhhc----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhH
Q psy6178 497 SVTANALQSISTA-CCTHMVGHFNGLLQIIQCLDTL----SISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQV 569 (912)
Q Consensus 497 ~~A~~al~~l~~~-~~~~L~~~~~~ll~~~~~l~~~----~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~ 569 (912)
..|...|..+... ....+...++.++..+..-... ..+.+.+..+++-+-..+.. +.+....++.++.-+.
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~--d~~~~~l~~kl~~~~~ 156 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK--DKQKESLVEKLCQRFL 156 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHH
Confidence 9999999999887 4455666666666655432221 23444556666554443332 3445555555555443
No 73
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=90.80 E-value=3.4 Score=36.09 Aligned_cols=91 Identities=9% Similarity=0.110 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCC---C---ChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcC
Q psy6178 479 LETILNFLLHCLQQ---P---GLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDM 552 (912)
Q Consensus 479 l~~~l~~l~~~l~~---~---~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~ 552 (912)
+..++..+-..+++ . .-+.++-+++..+.+-+++++.+..|+++..++..... ++-+...+++-...+..+
T Consensus 9 ~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~---~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 9 ILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI---PELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHC
Confidence 44555555555555 1 16788999999999999999999999999999865543 245778899999999999
Q ss_pred CHHHHHHHHHHHHHHhHHHH
Q psy6178 553 PQDQISEALKQLCLVQVKPL 572 (912)
Q Consensus 553 p~~~~~~~l~~l~~p~~~~l 572 (912)
++++..+.+.++...++..|
T Consensus 86 ~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 86 DEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred CHHHHHHHHHHHHHHHHHhc
Confidence 98877777777666655443
No 74
>KOG1992|consensus
Probab=89.80 E-value=48 Score=39.10 Aligned_cols=246 Identities=14% Similarity=0.121 Sum_probs=117.9
Q ss_pred chhHHHHHHHHHHHHHHHhch---------hhHHhHHHHHHHHHHHHhcCCCcchHHhHHHHHHHhcC--ccchHHHHHH
Q psy6178 636 DARVMEHSSRCLRYAIRCVGK---------DFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYAT--SHCVSGLLDM 704 (912)
Q Consensus 636 ~~~v~e~~~~~~~~~~~~l~~---------~~~p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~--~~~~~~l~~l 704 (912)
...|...+..++.+++..-+. ++.|++..++..+...+.......==|+...+...++- +.+.+....+
T Consensus 511 s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~ 590 (960)
T KOG1992|consen 511 SRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPEL 590 (960)
T ss_pred chHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHH
Confidence 344445555666655544433 46777777777666555433323323355555555543 2333334444
Q ss_pred HHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHh----CCccccCchhhHHHHHHHHHhcccCCchhHHHHHHHHH
Q psy6178 705 VQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQR----APIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFY 780 (912)
Q Consensus 705 ~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~----~p~~~l~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~ 780 (912)
+..+..-+-..-.++ ++|---.-.|.-+..++++ .|..+- .+-..+|..-...+.-+-.+-.-.+++.++
T Consensus 591 l~~Lteiv~~v~KNP----s~P~fnHYLFEsi~~li~~t~~~~~~~vs--~~e~aL~p~fq~Il~eDI~EfiPYvfQlla 664 (960)
T KOG1992|consen 591 LRQLTEIVEEVSKNP----SNPQFNHYLFESIGLLIRKTCKANPSAVS--SLEEALFPVFQTILSEDIQEFIPYVFQLLA 664 (960)
T ss_pred HHHHHHHHHHHhcCC----CCchhHHHHHHHHHHHHHHHhccCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433332222222 4555444455555555444 343331 122222221111222223344567888888
Q ss_pred HHhhccCCCCcccCccccCCCCchHHHHHHHHHHH-----HH--hhHHHHHHHHHHccccCCCcch--hhHHHHHHHHHH
Q psy6178 781 DLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIV-----SK--HGQALVSNLLQACVFSLHTYMM--ADVADVLYELIS 851 (912)
Q Consensus 781 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~g~~lv~~ll~~~~~~~~~~~~--~~~a~vL~~l~~ 851 (912)
.++..+..+- + +.+.+.+.-++ .. .-+++|+-+ .++...-+.... +.+..+|.-+.+
T Consensus 665 ~lve~~~~~i---------p----~~~~~l~~~lLsp~lW~r~gNipalvrLl-~aflk~g~~~~~~~~~l~~iLGifqk 730 (960)
T KOG1992|consen 665 VLVEHSSGTI---------P----DSYSPLFPPLLSPNLWKRSGNIPALVRLL-QAFLKTGSQIVEAADKLSGILGIFQK 730 (960)
T ss_pred HHHHhcCCCC---------c----hhHHHHHHHhcCHHHHhhcCCcHHHHHHH-HHHHhcCchhhcccccchhHHHHHHH
Confidence 8888776522 1 12222222222 12 235666653 333332222222 345555555555
Q ss_pred hCh----HHH-HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHhhhhhhh--hHHHHHHHH
Q psy6178 852 VDR----QVS-NQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAY--DVGQALKEL 907 (912)
Q Consensus 852 ~~~----~~~-~~wl~~~l~~~p~~~~~~~~~~t~~~k~~f~~~l~~~~~~~--~~~~~~~~F 907 (912)
.-+ +.. =..|.+++..+|.. .+.|-.|.-|..-+.|.++.| +|...+--|
T Consensus 731 LiaSka~Dh~GF~LLn~i~~~~~~~------~~~py~k~i~~llf~RlqnskT~kf~k~~~vF 787 (960)
T KOG1992|consen 731 LIASKANDHHGFYLLNTIIESIPPN------ELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVF 787 (960)
T ss_pred HhcCcccchhHHHHHHHHHhcCCHh------hhhHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 333 222 23456677777755 677788888888777776654 444444444
No 75
>KOG0212|consensus
Probab=89.59 E-value=40 Score=37.89 Aligned_cols=326 Identities=13% Similarity=0.171 Sum_probs=169.6
Q ss_pred HHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCCCCCccccch
Q psy6178 296 ALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHD 375 (912)
Q Consensus 296 ~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee~~~ 375 (912)
++.=.+.|.+.++.- |...+++-.|.++.... ....++|..+.+++++-+. |.|....+..+
T Consensus 85 iv~Pv~~cf~D~d~~-------vRyyACEsLYNiaKv~k--------~~v~~~Fn~iFdvL~klsa---Dsd~~V~~~ae 146 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQ-------VRYYACESLYNIAKVAK--------GEVLVYFNEIFDVLCKLSA---DSDQNVRGGAE 146 (675)
T ss_pred hhHHHHHhccCccce-------eeeHhHHHHHHHHHHhc--------cCcccchHHHHHHHHHHhc---CCccccccHHH
Confidence 344456677666666 88889998888776432 3345667777777766553 22211111122
Q ss_pred HHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhcCCCCccchhHHHHHHHHhh--cccCC-CCcCcHHHHHHHHhcCCCC
Q psy6178 376 FYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVA--KNVLP-EENDVVPKVVEAILHLPPS 452 (912)
Q Consensus 376 f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~ia--e~~~~-~~~~~l~~l~~~l~~~~~~ 452 (912)
..+ +-+.|+...-..-+.-+.+++-+-.++..-++ -+-.|.++++. +.+++ +.-.+++.++..+.++..+
T Consensus 147 LLd--RLikdIVte~~~tFsL~~~ipLL~eriy~~n~-----~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD 219 (675)
T KOG0212|consen 147 LLD--RLIKDIVTESASTFSLPEFIPLLRERIYVINP-----MTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSD 219 (675)
T ss_pred HHH--HHHHHhccccccccCHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcC
Confidence 211 11112111111111112233333333321111 12234444332 33332 1346777888777777777
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCcCc--HHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHh
Q psy6178 453 THIAVRYTSLLLLGELCEWIDKHPHT--LETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCL 528 (912)
Q Consensus 453 ~~~~v~~t~~~~lg~y~~~l~~~p~~--l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l 528 (912)
+++.||.-+=.+++.+-.-+.+.|.. .+...+.+...++.|+ ++..|-.=+..|..--+..+.+|++.++..+.+.
T Consensus 220 ~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc 299 (675)
T KOG0212|consen 220 SSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPC 299 (675)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccC
Confidence 78899887777888888888888865 5677788887777654 8888888888888888889999999988877643
Q ss_pred hhc--CCChHHHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcC
Q psy6178 529 DTL--SISNDAAIGLLK-GVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTS 605 (912)
Q Consensus 529 ~~~--~~~~~~~~~l~e-ai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ 605 (912)
... ..+..+-...+. .+..+.+ .+....-+ =..++++-+.+.+..+. .. ..+..++-+..+.+...
T Consensus 300 ~s~~e~~~i~~~a~~~n~~l~~l~s---~~~~~~~i--d~~~ii~vl~~~l~~~~---~~---tri~~L~Wi~~l~~~~p 368 (675)
T KOG0212|consen 300 LSDTEEMSIKEYAQMVNGLLLKLVS---SERLKEEI--DYGSIIEVLTKYLSDDR---EE---TRIAVLNWIILLYHKAP 368 (675)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHh---hhhhcccc--chHHHHHHHHHHhhcch---HH---HHHHHHHHHHHHHhhCc
Confidence 322 111111111111 1222221 11111001 12355555555555431 11 12345555566655443
Q ss_pred CCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhch-hhHHhHHHHH
Q psy6178 606 PRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGK-DFAHLLEPLV 666 (912)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~-~~~p~l~~l~ 666 (912)
. -+......+.+.+...+. ..+.+|+...-.++..+..+-.. +..+|+..++
T Consensus 369 ~-------ql~~h~~~if~tLL~tLs--d~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL 421 (675)
T KOG0212|consen 369 G-------QLLVHNDSIFLTLLKTLS--DRSDEVVLLALSLLASICSSSNSPNLRKFLLSLL 421 (675)
T ss_pred c-------hhhhhccHHHHHHHHhhc--CchhHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 2 122233444444333222 24677888888888877664332 3344444433
No 76
>KOG1058|consensus
Probab=89.45 E-value=49 Score=38.64 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=59.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHH
Q psy6178 452 STHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQC 527 (912)
Q Consensus 452 ~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~ 527 (912)
+++..+|..+++++.+.- .|+++.+.++.+..+|.+++ |++.|.-|+..+-+. ..+|.|..|.++..+..
T Consensus 110 HPNEyiRG~TLRFLckLk-----E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~ 181 (948)
T KOG1058|consen 110 HPNEYIRGSTLRFLCKLK-----EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLL 181 (948)
T ss_pred CchHhhcchhhhhhhhcC-----cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHH
Confidence 457889999998887643 59999999999999999987 999999999888776 56899999999887653
No 77
>KOG1943|consensus
Probab=89.43 E-value=60 Score=39.63 Aligned_cols=236 Identities=15% Similarity=0.154 Sum_probs=123.8
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHhhhhhh
Q psy6178 439 VPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQ---QPGLASVTANALQSISTACCTHMV 515 (912)
Q Consensus 439 l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~---~~~v~~~A~~al~~l~~~~~~~L~ 515 (912)
+..++..+++...+.+-.||.+++.-+|+.+.-+. +++...++.-++..+. ++..-..||-||..++.. .-+.
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r--GlLl 414 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR--GLLL 414 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc--CCcc
Confidence 44555566666666778999999999999886553 4555666666655222 234666888888887654 2222
Q ss_pred h----c-HHHHHHHHH--H-hhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHH----------------
Q psy6178 516 G----H-FNGLLQIIQ--C-LDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKP---------------- 571 (912)
Q Consensus 516 ~----~-~~~ll~~~~--~-l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~---------------- 571 (912)
| . +|-++..+. . ......+...|......+-++..+-.+....+++.++..-++..
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 2 2 233333322 1 11122344456666666666666666655556666555544321
Q ss_pred HHHHHHhcC-CCCCCCCCChHHHHHHHH-----HHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHh--hccchhHHHHH
Q psy6178 572 LCELIEKQI-KPEKNKKSDPVIWLDRLA-----AIFKHTSPRIMSEPHPCQGVITELWPVLSKTCET--YQQDARVMEHS 643 (912)
Q Consensus 572 l~~~~~~~~-~~~~~~~~~~~~~l~~l~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~v~e~~ 643 (912)
++..+-..+ .|. -..++...+.++ ...+.+. .++..+-.-.-|++..++.+ .+.|+.++|.+
T Consensus 495 lqE~VGR~~n~p~---Gi~Lis~~dy~sV~~rsNcy~~l~-------~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irela 564 (1133)
T KOG1943|consen 495 LQENVGRQGNFPH---GISLISTIDYFSVTNRSNCYLDLC-------VSIAEFSGYREPVFNHLLTKKVCHWDVKIRELA 564 (1133)
T ss_pred HHHHhccCCCCCC---chhhhhhcchhhhhhhhhHHHHHh-------HHHHhhhhHHHHHHHHHHhcccccccHHHHHHH
Confidence 111111110 000 011111112111 1111111 11111222234677777765 66799999999
Q ss_pred HHHHHHHHHHhchhhH-HhHHHHHHHHHHHHhcCCCcchHHhHHHH
Q psy6178 644 SRCLRYAIRCVGKDFA-HLLEPLVKQIVVLYSKHPHSSFLYLGSIL 688 (912)
Q Consensus 644 ~~~~~~~~~~l~~~~~-p~l~~l~~~l~~~~~~~~~~~~L~~~~~l 688 (912)
-.+++.....-.+.+. -++|++++.....=....+++++-..+.+
T Consensus 565 a~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 565 AYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred HHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence 9999997665555555 46788776554332333455555544433
No 78
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=88.15 E-value=35 Score=39.14 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhh
Q psy6178 454 HIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMV 515 (912)
Q Consensus 454 ~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~ 515 (912)
.+...+-+..+|.+|..+| |++-..+++.++.-..+.+ |+..|.+.|-.||++-..++.
T Consensus 35 ~~k~K~Laaq~I~kffk~F---P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHF---PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred CHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence 5677888888888766544 8888888888887776654 777787788777777544433
No 79
>KOG1060|consensus
Probab=88.07 E-value=62 Score=38.08 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHhhhhh
Q psy6178 879 ATPEQLIEFHSQVTRSES 896 (912)
Q Consensus 879 ~t~~~k~~f~~~l~~~~~ 896 (912)
-.-.++.||++++.....
T Consensus 556 YDiRDRaRF~r~l~~~~~ 573 (968)
T KOG1060|consen 556 YDIRDRARFLRQLISPLE 573 (968)
T ss_pred cchhHHHHHHHHHhccHH
Confidence 456788899988875443
No 80
>KOG1240|consensus
Probab=87.43 E-value=28 Score=42.78 Aligned_cols=90 Identities=24% Similarity=0.234 Sum_probs=57.8
Q ss_pred hHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcC--------cCcHHHHHHHHHHh
Q psy6178 418 EAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKH--------PHTLETILNFLLHC 489 (912)
Q Consensus 418 Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~--------p~~l~~~l~~l~~~ 489 (912)
=+||-.+..++..+.. +..+.++++.+..+..++.+.||.+++.++.+.-.-...- |+||-+-++-+...
T Consensus 441 ~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 441 LAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred HHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhcc
Confidence 4667778888887753 5667888887777777788999999999988766655543 34554444444332
Q ss_pred cCCCChHHHHHHHHHHHHHH
Q psy6178 490 LQQPGLASVTANALQSISTA 509 (912)
Q Consensus 490 l~~~~v~~~A~~al~~l~~~ 509 (912)
-....|+..-|..|..|++.
T Consensus 519 ~~~~~vRiayAsnla~LA~t 538 (1431)
T KOG1240|consen 519 SSAQIVRIAYASNLAQLAKT 538 (1431)
T ss_pred CccceehhhHHhhHHHHHHH
Confidence 11123555555556655544
No 81
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=87.07 E-value=0.46 Score=30.70 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=20.5
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHH
Q psy6178 444 EAILHLPPSTHIAVRYTSLLLLGELCEW 471 (912)
Q Consensus 444 ~~l~~~~~~~~~~v~~t~~~~lg~y~~~ 471 (912)
+.+.++..|+++.||.+++..+|.+++.
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 3444444567999999999999998763
No 82
>KOG1058|consensus
Probab=87.06 E-value=68 Score=37.52 Aligned_cols=155 Identities=18% Similarity=0.266 Sum_probs=85.0
Q ss_pred HHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCCCCCccccchHHHH
Q psy6178 300 VLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDF 379 (912)
Q Consensus 300 ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee~~~f~~~ 379 (912)
+|...+.|+++ |..-++++-..+.+. . + +.+++..+-+...- ..++|.++-..|
T Consensus 322 vLrvLss~dld-------vr~Ktldi~ldLvss---r--N---------vediv~~Lkke~~k-----T~~~e~d~~~~y 375 (948)
T KOG1058|consen 322 VLRVLSSPDLD-------VRSKTLDIALDLVSS---R--N---------VEDIVQFLKKEVMK-----THNEESDDNGKY 375 (948)
T ss_pred HHHHcCccccc-------HHHHHHHHHHhhhhh---c--c---------HHHHHHHHHHHHHh-----ccccccccchHH
Confidence 34556678898 899999887666543 0 0 12222222222211 111245667789
Q ss_pred HhHhHHHHHhhhHhcCcH--HHHHHHHHHhhcCCCCccchhHHHHHHHHhhccc---CCCCcCcHHHHHHHHhcCCCCch
Q psy6178 380 RLKVSELVKDVVFIVGSS--TCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNV---LPEENDVVPKVVEAILHLPPSTH 454 (912)
Q Consensus 380 R~~~~d~l~~~~~~l~~~--~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~---~~~~~~~l~~l~~~l~~~~~~~~ 454 (912)
|+-+-..+..|.--++.- ..++.++..+. +.+ -+|+...+.-+.|.+ +.-....+.+++..+.++- .
T Consensus 376 RqlLiktih~cav~Fp~~aatvV~~ll~fis--D~N---~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~ir---S 447 (948)
T KOG1058|consen 376 RQLLIKTIHACAVKFPEVAATVVSLLLDFIS--DSN---EAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIR---S 447 (948)
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHhc--cCC---HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhc---c
Confidence 999888888776555431 24555555553 222 245555554444443 3223345566666555443 3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCC
Q psy6178 455 IAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQ 492 (912)
Q Consensus 455 ~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~ 492 (912)
+.+-+.++|.+|.|++-... +..++..+-..++.
T Consensus 448 ~ki~rgalwi~GeYce~~~~----i~~~~k~i~~slGE 481 (948)
T KOG1058|consen 448 SKICRGALWILGEYCEGLSE----IQSVIKIIRQSLGE 481 (948)
T ss_pred cccchhHHHHHHHHHhhhHH----HHHHHHHHHHhccc
Confidence 56777889999999975431 33444444445554
No 83
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=86.87 E-value=14 Score=32.20 Aligned_cols=101 Identities=12% Similarity=0.184 Sum_probs=59.6
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhH
Q psy6178 560 ALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARV 639 (912)
Q Consensus 560 ~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v 639 (912)
+++.-+-.+++.+...+.... .... ...-...+..++.+.+ +.. ..+..+.-++ ...+......+++
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~-~~~~-~~ek~~~l~si~~lI~-~~~------~~i~~~~pQI----~a~L~sal~~~~l 70 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLR-GKKP-IPEKKRALRSIEELIK-LGG------SHISSARPQI----MACLQSALEIPEL 70 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccc-cCCC-HHHHHHHHHHHHHHHH-HhH------HHHHHHHHHH----HHHHHHHhCChhh
Confidence 344444455566666665521 0110 1112346777777777 332 1223333444 4444444455689
Q ss_pred HHHHHHHHHHHHHHhc-hhhHHhHHHHHHHHHHHH
Q psy6178 640 MEHSSRCLRYAIRCVG-KDFAHLLEPLVKQIVVLY 673 (912)
Q Consensus 640 ~e~~~~~~~~~~~~l~-~~~~p~l~~l~~~l~~~~ 673 (912)
.+.++++|...++.++ ++.+|++++++-.++..+
T Consensus 71 ~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 71 REEALSCWNCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999987 468888888887666543
No 84
>PRK09687 putative lyase; Provisional
Probab=86.76 E-value=14 Score=38.75 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=71.5
Q ss_pred HHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHH
Q psy6178 402 HMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLET 481 (912)
Q Consensus 402 ~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~ 481 (912)
.+.+.| .+.+.+...++.++|+.+++ ...++.+... + .+.++.+|..+.+++|.+.. .+.-...
T Consensus 27 ~L~~~L--~d~d~~vR~~A~~aL~~~~~------~~~~~~l~~l-l---~~~d~~vR~~A~~aLg~lg~----~~~~~~~ 90 (280)
T PRK09687 27 ELFRLL--DDHNSLKRISSIRVLQLRGG------QDVFRLAIEL-C---SSKNPIERDIGADILSQLGM----AKRCQDN 90 (280)
T ss_pred HHHHHH--hCCCHHHHHHHHHHHHhcCc------chHHHHHHHH-H---hCCCHHHHHHHHHHHHhcCC----CccchHH
Confidence 344444 35566677788888876653 2233444442 2 23478999999999998542 2222445
Q ss_pred HHHHHHHh-cCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q psy6178 482 ILNFLLHC-LQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAI 547 (912)
Q Consensus 482 ~l~~l~~~-l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~ 547 (912)
+++.+... +.+++ |+..|+.+|..+|..-.. +.+.+++.+.....- -+...|..++.++|.
T Consensus 91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D-~~~~VR~~a~~aLg~ 154 (280)
T PRK09687 91 VFNILNNLALEDKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFD-KSTNVRFAVAFALSV 154 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhC-CCHHHHHHHHHHHhc
Confidence 66666654 45554 888999999988643211 122333333222111 144567777777764
No 85
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=86.08 E-value=20 Score=38.49 Aligned_cols=89 Identities=11% Similarity=0.181 Sum_probs=62.0
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhh-HHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCc
Q psy6178 260 LEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSI-KALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKND 338 (912)
Q Consensus 260 ~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~-~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~ 338 (912)
.|....+.+++..+.+.+...+..-+ + +.+ .+++.++....|+..+ |++.++.....+.+.....+.
T Consensus 134 Pe~r~~ff~LL~~i~~~~f~~l~~lp--~---~~f~~~idsi~wg~kh~~~~-------I~~~~L~~l~~ll~~~~~~~~ 201 (319)
T PF08767_consen 134 PEHRVNFFKLLRAINEHCFPALLQLP--P---EQFKLVIDSIVWGFKHTNRE-------ISETGLNILLELLNNVSKTNP 201 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHS---H---HHHHHHHHHHHHHHTSSSHH-------HHHHHHHHHHHHHHHHHH-SH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHcCC--H---HHHHHHHHHHHHHhCCCcHH-------HHHHHHHHHHHHHHHHHhcCH
Confidence 36788999999999998888877654 1 223 3578888888999999 999999888888776655333
Q ss_pred hhhhhcchHHHHHHHHHHHhhc
Q psy6178 339 DSLTVLFKPHVERLIGALCKHC 360 (912)
Q Consensus 339 ~~~~~~~~~~~~~ll~~l~~k~ 360 (912)
+...+.++.++..++..++.-+
T Consensus 202 ~~~~~F~~~y~~~il~~if~vl 223 (319)
T PF08767_consen 202 EFANQFYQQYYLDILQDIFSVL 223 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666665554443
No 86
>KOG1248|consensus
Probab=85.64 E-value=1e+02 Score=38.18 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHH
Q psy6178 494 GLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQIS 558 (912)
Q Consensus 494 ~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~ 558 (912)
.+.+.+-..+..+++.|+.+-.|++-.-++.+..+.... +......+=++||+.+.++.+|...
T Consensus 365 ~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~-d~~~~~~ld~~IGSAV~AmGPe~vL 428 (1176)
T KOG1248|consen 365 AVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASP-DFFHKLQLDQCIGSAVRAMGPERVL 428 (1176)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCC-CCccHHHHHHHHHHHHHhhCHHHHH
Confidence 367778888889999999988888766666665543321 1112446778999999999887643
No 87
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=84.98 E-value=11 Score=36.22 Aligned_cols=87 Identities=9% Similarity=0.109 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHH-hhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCH-
Q psy6178 479 LETILNFLLHCLQQPG--LASVTANALQSISTA-CCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQ- 554 (912)
Q Consensus 479 l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~-~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~- 554 (912)
....|+.++.|+.+.+ -+--|...+..+.+. ....+.|.+|+++.-+....+. -+.+.....++++-.++.+.+.
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~t-r~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNT-RDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhhhhh
Confidence 4577888999998743 566788888888888 6778999999999999865543 2555677778887777554332
Q ss_pred -HHHHHHHHHHHH
Q psy6178 555 -DQISEALKQLCL 566 (912)
Q Consensus 555 -~~~~~~l~~l~~ 566 (912)
+...+++.+++.
T Consensus 115 G~aLvPyyrqLLp 127 (183)
T PF10274_consen 115 GEALVPYYRQLLP 127 (183)
T ss_pred hHHHHHHHHHHHH
Confidence 455666666533
No 88
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=84.96 E-value=1.6e+02 Score=39.78 Aligned_cols=342 Identities=13% Similarity=0.143 Sum_probs=173.3
Q ss_pred HHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 399 CFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 399 ~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
.++.+.+.|..+ +-...+.+++.++.++.+-+.+ +...++.++++|. . +++.++..++|+|+..+..-.
T Consensus 447 gIp~LV~LL~s~--s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~-s---~~~~iqeeAawAL~NLa~~~~ 520 (2102)
T PLN03200 447 GVQLLISLLGLS--SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE-T---GSQKAKEDSATVLWNLCCHSE 520 (2102)
T ss_pred cHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-C---CCHHHHHHHHHHHHHHhCCcH
Confidence 355555556432 3345678889999998764322 2456777777763 2 368999999999998875211
Q ss_pred c------CcCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q psy6178 474 K------HPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAI 547 (912)
Q Consensus 474 ~------~p~~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~ 547 (912)
. ....++++++.+-++ +++.+..|+.++.+++..-..... +.+... ... .+...+..++++++.
T Consensus 521 qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~nLi~~~d~~~I---~~Lv~L----Lls-dd~~~~~~aL~vLgn 590 (2102)
T PLN03200 521 DIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLTKLVRTADAATI---SQLTAL----LLG-DLPESKVHVLDVLGH 590 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhccchhHH---HHHHHH----hcC-CChhHHHHHHHHHHH
Confidence 1 123455555554332 456889999999999765433221 223322 221 234567778899999
Q ss_pred HHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHH
Q psy6178 548 IVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLS 627 (912)
Q Consensus 548 vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 627 (912)
++.....++...... ...--+..|.+++... ++. ........|+.++.+-.. ..-..+....+|.+.
T Consensus 591 Ilsl~~~~d~~~~g~-~~~ggL~~Lv~LL~sg---s~~---ikk~Aa~iLsnL~a~~~d------~~~avv~agaIpPLV 657 (2102)
T PLN03200 591 VLSVASLEDLVREGS-AANDALRTLIQLLSSS---KEE---TQEKAASVLADIFSSRQD------LCESLATDEIINPCI 657 (2102)
T ss_pred HHhhcchhHHHHHhh-hccccHHHHHHHHcCC---CHH---HHHHHHHHHHHHhcCChH------HHHHHHHcCCHHHHH
Confidence 987665433211100 0012233444444432 111 112244566666664321 011223445556556
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHhchh----h--HHhHHHHHHHHHHHHhcCCCcchHH-hHHHHHHHhcCccchHH
Q psy6178 628 KTCETYQQDARVMEHSSRCLRYAIRCVGKD----F--AHLLEPLVKQIVVLYSKHPHSSFLY-LGSILVDEYATSHCVSG 700 (912)
Q Consensus 628 ~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~----~--~p~l~~l~~~l~~~~~~~~~~~~L~-~~~~lv~~~g~~~~~~~ 700 (912)
.++. .++.++...++.++..+++..... + ...++++++.+.. ....-.. .+..+...+..++....
T Consensus 658 ~LLs--s~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~-----~d~~v~e~Al~ALanLl~~~e~~~e 730 (2102)
T PLN03200 658 KLLT--NNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKS-----SSIEVAEQAVCALANLLSDPEVAAE 730 (2102)
T ss_pred HHHh--cCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhC-----CChHHHHHHHHHHHHHHcCchHHHH
Confidence 6555 356778888899988888643221 1 1135555554421 1111111 11122111211111110
Q ss_pred HHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccc-cC-----chhhHHHHHHHHHhcccCCchhHHH
Q psy6178 701 LLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAF-LT-----SSFISSVMQCGILATHLDHREANST 774 (912)
Q Consensus 701 l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~-l~-----~~~l~~i~~~~~~~l~~~~~~~~~~ 774 (912)
+.+ ...+.....+|+. ..|+..+.--.-+..+.+++|..= +. ...+..++. .|...+.+....
T Consensus 731 i~~--~~~I~~Lv~lLr~-----G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~----~L~~~~~~~~~~ 799 (2102)
T PLN03200 731 ALA--EDIILPLTRVLRE-----GTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVD----LLNSTDLDSSAT 799 (2102)
T ss_pred HHh--cCcHHHHHHHHHh-----CChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHH----HHhcCCcchhhH
Confidence 100 1112223334443 346667777777777777777321 21 112223333 355555554444
Q ss_pred --HHHHHHHHhhccC
Q psy6178 775 --VMKFFYDLIHNNR 787 (912)
Q Consensus 775 --~~~fl~~li~~~~ 787 (912)
++..+..+.....
T Consensus 800 ~~al~~l~~l~~~~~ 814 (2102)
T PLN03200 800 SEALEALALLARTKG 814 (2102)
T ss_pred HHHHHHHHHHHhhcc
Confidence 7888887777543
No 89
>KOG4524|consensus
Probab=84.96 E-value=55 Score=39.42 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhch
Q psy6178 591 VIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGK 656 (912)
Q Consensus 591 ~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~ 656 (912)
+..|+++.-.+--+.. ..+-+.|.+.+.||-+...+. .+|+-+++++|.|++.+..-.|.
T Consensus 821 vkaLdvl~~gl~~La~----~~n~LlPlvhq~W~~vie~~~--~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 821 VKALDVLSLGLPLLAT----YHNLLLPLVHQTWPSVIECLL--CKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHhccHHHhc----cchhHhHHHHhhhhHHHHHHh--cCchHHHHHHHHHHHHHHHHhhh
Confidence 3356666654444443 345688999999998777655 36888999999999988665553
No 90
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=84.64 E-value=11 Score=35.86 Aligned_cols=131 Identities=11% Similarity=0.100 Sum_probs=88.7
Q ss_pred HHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCcccc-Cc--hhhHHHHHHHHHhcccCCc-hhHHHHHHH
Q psy6178 703 DMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFL-TS--SFISSVMQCGILATHLDHR-EANSTVMKF 778 (912)
Q Consensus 703 ~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l-~~--~~l~~i~~~~~~~l~~~~~-~~~~~~~~f 778 (912)
..+..+..++..+|++ .+++-.-.-..++...++.|+...+ .+ +.+..++. .+..+++ ...++++..
T Consensus 21 ~~l~~l~~ri~~LL~s-----~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~----~L~~~~~~~~~~~ai~~ 91 (165)
T PF08167_consen 21 SALHKLVTRINSLLQS-----KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLS----ILEKPDPPSVLEAAIIT 91 (165)
T ss_pred HHHHHHHHHHHHHhCC-----CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHcCCCCHHHHHHHHHH
Confidence 3444556667777764 3455556667889999999844443 32 34555444 3443444 456888889
Q ss_pred HHHHhhccCCCCcccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccccCCCcchhhHHHHHHHHHHhChHHHH
Q psy6178 779 FYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSN 858 (912)
Q Consensus 779 l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~~~~~~~~~~~a~vL~~l~~~~~~~~~ 858 (912)
+..++...++.+ ...+++..++.+.++..++.-+.. .+..+..-+.|..+...||..++
T Consensus 92 L~~l~~~~~~~p------------------~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~r 150 (165)
T PF08167_consen 92 LTRLFDLIRGKP------------------TLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFR 150 (165)
T ss_pred HHHHHHHhcCCC------------------chHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCcccc
Confidence 999998776554 246777888888888888776553 57778888999999999998766
Q ss_pred HHHHH
Q psy6178 859 QWLQD 863 (912)
Q Consensus 859 ~wl~~ 863 (912)
..-.+
T Consensus 151 p~~~k 155 (165)
T PF08167_consen 151 PFANK 155 (165)
T ss_pred chHHH
Confidence 65443
No 91
>KOG0166|consensus
Probab=83.78 E-value=11 Score=42.45 Aligned_cols=138 Identities=20% Similarity=0.175 Sum_probs=83.8
Q ss_pred CChHHHHHHHHHHHHHHhhhh--hhh---cHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy6178 493 PGLASVTANALQSISTACCTH--MVG---HFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLV 567 (912)
Q Consensus 493 ~~v~~~A~~al~~l~~~~~~~--L~~---~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p 567 (912)
|.++-.||+||.+++.....+ .+. -+|.|+..+. + -+.+.++..+-|+|.|+.-.|.=.-.-.-...+.|
T Consensus 124 ~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~---s--~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~p 198 (514)
T KOG0166|consen 124 PTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS---S--PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDP 198 (514)
T ss_pred hhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc---C--CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHH
Confidence 678999999999999764432 221 2344443332 2 24556889999999998876542111122233455
Q ss_pred hHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHH
Q psy6178 568 QVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCL 647 (912)
Q Consensus 568 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~ 647 (912)
++..+ ... .. ........=.|+.++|+-+| .|-...+..++|++..++. ..|++|..-+|.++
T Consensus 199 Ll~~l----~~~---~~--~~~lRn~tW~LsNlcrgk~P------~P~~~~v~~iLp~L~~ll~--~~D~~Vl~Da~WAl 261 (514)
T KOG0166|consen 199 LLRLL----NKS---DK--LSMLRNATWTLSNLCRGKNP------SPPFDVVAPILPALLRLLH--STDEEVLTDACWAL 261 (514)
T ss_pred HHHHh----ccc---cc--hHHHHHHHHHHHHHHcCCCC------CCcHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Confidence 44322 211 11 01111234467888887654 4555677888888887665 57999999999998
Q ss_pred HHHHH
Q psy6178 648 RYAIR 652 (912)
Q Consensus 648 ~~~~~ 652 (912)
+....
T Consensus 262 syLsd 266 (514)
T KOG0166|consen 262 SYLTD 266 (514)
T ss_pred HHHhc
Confidence 87654
No 92
>KOG1060|consensus
Probab=83.77 E-value=1e+02 Score=36.48 Aligned_cols=359 Identities=11% Similarity=0.113 Sum_probs=157.3
Q ss_pred HHHhHhHHHHHhhhHhcCcHH--HHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchH
Q psy6178 378 DFRLKVSELVKDVVFIVGSST--CFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHI 455 (912)
Q Consensus 378 ~~R~~~~d~l~~~~~~l~~~~--~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~ 455 (912)
..|+.++-.+-.+|.. +++. -+..+...|- ++.+-..+=+|++++..+ |++ .-+.+..=+.-+|++..+.+.
T Consensus 158 yVRk~AA~AIpKLYsL-d~e~k~qL~e~I~~LL-aD~splVvgsAv~AF~ev---CPe-rldLIHknyrklC~ll~dvde 231 (968)
T KOG1060|consen 158 YVRKTAAHAIPKLYSL-DPEQKDQLEEVIKKLL-ADRSPLVVGSAVMAFEEV---CPE-RLDLIHKNYRKLCRLLPDVDE 231 (968)
T ss_pred HHHHHHHHhhHHHhcC-ChhhHHHHHHHHHHHh-cCCCCcchhHHHHHHHHh---chh-HHHHhhHHHHHHHhhccchhh
Confidence 3677777777777665 3331 1222222332 455555677888887643 332 223333333444444322111
Q ss_pred HHHHHHHHHHHHHHHHHhcCcC--------------------------cHHHHHHHHHHh----c--CCCChHHHHHHHH
Q psy6178 456 AVRYTSLLLLGELCEWIDKHPH--------------------------TLETILNFLLHC----L--QQPGLASVTANAL 503 (912)
Q Consensus 456 ~v~~t~~~~lg~y~~~l~~~p~--------------------------~l~~~l~~l~~~----l--~~~~v~~~A~~al 503 (912)
-=+--.+.++-||++.--..|. ...+=+..+++. + ++|.|.-++|.++
T Consensus 232 WgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~ 311 (968)
T KOG1060|consen 232 WGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLF 311 (968)
T ss_pred hhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHH
Confidence 1122345778888864222220 011112223322 2 2466888888888
Q ss_pred HHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HHhHHHH------H
Q psy6178 504 QSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLC----LVQVKPL------C 573 (912)
Q Consensus 504 ~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~----~p~~~~l------~ 573 (912)
..++-... +......++.. ... ..+.+.-++..|+.+.-.-| .-..++++.+. +|..-++ .
T Consensus 312 y~lAP~~~--~~~i~kaLvrL----Lrs--~~~vqyvvL~nIa~~s~~~~-~lF~P~lKsFfv~ssDp~~vk~lKleiLs 382 (968)
T KOG1060|consen 312 YHLAPKNQ--VTKIAKALVRL----LRS--NREVQYVVLQNIATISIKRP-TLFEPHLKSFFVRSSDPTQVKILKLEILS 382 (968)
T ss_pred HhhCCHHH--HHHHHHHHHHH----Hhc--CCcchhhhHHHHHHHHhcch-hhhhhhhhceEeecCCHHHHHHHHHHHHH
Confidence 87764432 22223333332 221 23346667777776665443 22223333221 2222111 1
Q ss_pred HHHHhcCC-----------CCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHH
Q psy6178 574 ELIEKQIK-----------PEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEH 642 (912)
Q Consensus 574 ~~~~~~~~-----------~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~ 642 (912)
.+++..+. .+. .+...+..+..||-++..... +-..++.-+.+++.. +|.-|+..
T Consensus 383 ~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~s-----------v~~tCL~gLv~Llss--hde~Vv~e 448 (968)
T KOG1060|consen 383 NLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGS-----------VTDTCLNGLVQLLSS--HDELVVAE 448 (968)
T ss_pred HHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCc-----------hhhHHHHHHHHHHhc--ccchhHHH
Confidence 11111100 000 012223345555655554432 224444445555554 47777788
Q ss_pred HHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCCCcchHHhHHHHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCC
Q psy6178 643 SSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGL 722 (912)
Q Consensus 643 ~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~ 722 (912)
+..+++.++..=...-..++..+...+-..-...--++.+|+++..+.. +..++.-++..+.+. ..
T Consensus 449 aV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~-------------vpri~PDVLR~laks-Fs 514 (968)
T KOG1060|consen 449 AVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEI-------------VPRIAPDVLRKLAKS-FS 514 (968)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhh-------------cchhchHHHHHHHHh-hc
Confidence 8888888876422222223333333321111112224555655432211 111233333333331 22
Q ss_pred CCCCchHHHHHHHHHHHHHhCCccccCchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhhc
Q psy6178 723 KNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHN 785 (912)
Q Consensus 723 ~~~pd~~~~~f~l~~~~l~~~p~~~l~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~ 785 (912)
++.+++.-.-.+|..++....+..+ +-+.+.+|..+ .-+-..-.|.-++|+..++..
T Consensus 515 ~E~~evKlQILnL~aKLyl~~~~~~--kll~~Yv~~L~----~yD~sYDiRDRaRF~r~l~~~ 571 (968)
T KOG1060|consen 515 DEGDEVKLQILNLSAKLYLTNIDQT--KLLVQYVFELA----RYDLSYDIRDRARFLRQLISP 571 (968)
T ss_pred cccchhhHHHHHhhhhheEechhhH--HHHHHHHHHHh----ccCCCcchhHHHHHHHHHhcc
Confidence 3445555455555555544443321 11233344422 122233456677888777754
No 93
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=82.80 E-value=2.6 Score=37.37 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=44.3
Q ss_pred cHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhc------CcCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy6178 438 VVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK------HPHTLETILNFLLHCLQQPGLASVTANALQSISTACC 511 (912)
Q Consensus 438 ~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~------~p~~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~~~ 511 (912)
.++.+++.+. +.++.++..++.+++.++..... ..+.++.+++.+-. .+++++..|+.++.+++....
T Consensus 8 ~i~~l~~~l~----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 8 GLPALVSLLS----SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred ChHHHHHHHH----cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHccCcH
Confidence 4556666553 23588999999999887753110 12445555554432 245699999999999997653
No 94
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=82.28 E-value=18 Score=34.96 Aligned_cols=53 Identities=25% Similarity=0.460 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHH
Q psy6178 454 HIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSISTA 509 (912)
Q Consensus 454 ~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~ 509 (912)
||.||..++.++|..+ .++|..+.+.++.+...|.|++ |+..|...+.++...
T Consensus 1 ~~~vR~n~i~~l~DL~---~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLC---IRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred CHHHHHHHHHHHHHHH---HhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 5788988888887655 4679999999999999999975 889999999888754
No 95
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=82.09 E-value=19 Score=34.33 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=69.1
Q ss_pred CccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCc--------H
Q psy6178 413 MWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHT--------L 479 (912)
Q Consensus 413 ~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~--------l 479 (912)
+...+-+++..+..+.+.++.+ ....+..+++.|.+ + ..+.+...++.++++...+....|++ +
T Consensus 38 ~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~-~--~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l 114 (165)
T PF08167_consen 38 SAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK-P--DPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNL 114 (165)
T ss_pred ChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC-C--CCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccH
Confidence 3444447777888888776432 23445556666544 2 45778899999999999998887753 5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhcHHHHHHH
Q psy6178 480 ETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQI 524 (912)
Q Consensus 480 ~~~l~~l~~~l~~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~ 524 (912)
+.+++.++.-+.++.+...+..++..+...-...+.||...+-..
T Consensus 115 ~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~ 159 (165)
T PF08167_consen 115 PKFIQSLLQLLQDSSCPETALDALATLLPHHPTTFRPFANKIESA 159 (165)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHCCccccchHHHHHHH
Confidence 555666665555445566666667666665555555655544433
No 96
>KOG2160|consensus
Probab=81.86 E-value=31 Score=36.63 Aligned_cols=134 Identities=14% Similarity=0.176 Sum_probs=81.1
Q ss_pred CCCCccchhHHHHHHHHhhcccCCCC----cCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcC--------
Q psy6178 410 NNVMWEQTEAALYIMQSVAKNVLPEE----NDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPH-------- 477 (912)
Q Consensus 410 ~~~~w~~~Ea~L~~l~~iae~~~~~~----~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~-------- 477 (912)
+..+-++.|.|+.-+..+.+.++... ...+..++. ..++.++-||..+.++||... ++||.
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~---qNNP~~Qe~v~E~ 165 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG----YLENSDAELRELAARVIGTAV---QNNPKSQEQVIEL 165 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH----HhcCCcHHHHHHHHHHHHHHH---hcCHHHHHHHHHc
Confidence 56678899999999999998875321 122333333 223457899999999999754 56663
Q ss_pred -cHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhhhhh-----cHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHh
Q psy6178 478 -TLETILNFLLHCLQQPG-LASVTANALQSISTACCTHMVG-----HFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVS 550 (912)
Q Consensus 478 -~l~~~l~~l~~~l~~~~-v~~~A~~al~~l~~~~~~~L~~-----~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~ 550 (912)
.+..++..+. -.+|. ++..|-+|+..+.+.-..-... -...+.+.++ +...+...+..++.-++.++.
T Consensus 166 ~~L~~Ll~~ls--~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~---~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 166 GALSKLLKILS--SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQ---SNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred ccHHHHHHHHc--cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHH---cCCcchHHHHHHHHHHHHHHH
Confidence 3333333332 12343 7788888888887765432222 2233333333 212334456778888888887
Q ss_pred cCCHH
Q psy6178 551 DMPQD 555 (912)
Q Consensus 551 ~~p~~ 555 (912)
..+.+
T Consensus 241 ~~~s~ 245 (342)
T KOG2160|consen 241 EDKSD 245 (342)
T ss_pred hhhhh
Confidence 76653
No 97
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=81.70 E-value=26 Score=30.51 Aligned_cols=71 Identities=14% Similarity=0.262 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhch-hhHHhHHHHHHHHH
Q psy6178 592 IWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGK-DFAHLLEPLVKQIV 670 (912)
Q Consensus 592 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~-~~~p~l~~l~~~l~ 670 (912)
..+..++.+.+..++ .+.... |-+...+..--..+++.+.++++|...++.+.+ +..|++.+++-.+.
T Consensus 34 ~~i~ai~~lI~~~g~-------~i~~a~----pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~ 102 (107)
T smart00802 34 RALRSIGFLIKLMGK-------HISSAL----PQIMACLQSALEIPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAIL 102 (107)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 356777777774432 222333 434444444445788999999999999999874 57777777766555
Q ss_pred HHH
Q psy6178 671 VLY 673 (912)
Q Consensus 671 ~~~ 673 (912)
..+
T Consensus 103 ~~~ 105 (107)
T smart00802 103 PLW 105 (107)
T ss_pred Hhc
Confidence 443
No 98
>KOG1240|consensus
Probab=81.45 E-value=1.5e+02 Score=36.94 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=78.0
Q ss_pred HHhHhHHHHHhhhHhcCcH----HHHHHHHHHhhcCCCCccchhHHHHH-HHHhhcccCCCCcCcHHHHHHHHhcCCCCc
Q psy6178 379 FRLKVSELVKDVVFIVGSS----TCFRHMFNSLHENNVMWEQTEAALYI-MQSVAKNVLPEENDVVPKVVEAILHLPPST 453 (912)
Q Consensus 379 ~R~~~~d~l~~~~~~l~~~----~~l~~l~~~l~~~~~~w~~~Ea~L~~-l~~iae~~~~~~~~~l~~l~~~l~~~~~~~ 453 (912)
.|+.+-+-+..+|..+|.+ -++.++...| ++.+|+- -++.|- +..++-.+... +.=.-+++++.+...|.
T Consensus 594 Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfL--NDkDw~L-R~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~ 668 (1431)
T KOG1240|consen 594 VKRALLESIIPLCVFFGKEKSNDVILSHLITFL--NDKDWRL-RGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDG 668 (1431)
T ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHh--cCccHHH-HHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCc
Confidence 4555555566667766653 3577777767 4568883 454442 33333333321 11123444554555566
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhh-----hhhhcHHHHHH
Q psy6178 454 HIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSISTACCT-----HMVGHFNGLLQ 523 (912)
Q Consensus 454 ~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~-----~L~~~~~~ll~ 523 (912)
.+.|...++..+..+++-=--...++..+++.+...|-+|. ++..++.-+..+.+.... .+.|.+.+++.
T Consensus 669 EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 669 EEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred chhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 78887777766665554211113345556666666677887 777777777766655432 35566555554
No 99
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=81.21 E-value=8.8 Score=36.41 Aligned_cols=76 Identities=9% Similarity=0.088 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhh
Q psy6178 454 HIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQP-GLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDT 530 (912)
Q Consensus 454 ~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~-~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~ 530 (912)
--.+|.++.+++...-+-...+- -+..+++.+..|+.|. +++..+..-+.+++..+...+.+.++.+.+.+....+
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~-~~~~~~~~v~~GL~D~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRI-DISEFLDRVEAGLKDEHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS--HHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 35689999999987665322222 3677799999999984 3999999999999999999999988888888876543
No 100
>KOG1943|consensus
Probab=80.65 E-value=1.5e+02 Score=36.43 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=84.9
Q ss_pred cchhHHHHHHHHhhcccCCC-CcCcHHHHHHHHhcCC-CCchHHHHHHHH----HHHHHHHH------------------
Q psy6178 415 EQTEAALYIMQSVAKNVLPE-ENDVVPKVVEAILHLP-PSTHIAVRYTSL----LLLGELCE------------------ 470 (912)
Q Consensus 415 ~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~~~-~~~~~~v~~t~~----~~lg~y~~------------------ 470 (912)
..++||.|..-+++.+-.+. ..+++.++.+.++... -|...-.|+++. +.+||.++
T Consensus 443 ~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~ 522 (1133)
T KOG1943|consen 443 HVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTN 522 (1133)
T ss_pred chHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhh
Confidence 45699999999999986554 3456666665433211 133333444332 45555332
Q ss_pred ----------HHhcCcCcHHHHHHHHHHh-cCC--CChHHHHHHHHHHHHHHhhhhhh-hcHHHHHHHHHHhhhcCCChH
Q psy6178 471 ----------WIDKHPHTLETILNFLLHC-LQQ--PGLASVTANALQSISTACCTHMV-GHFNGLLQIIQCLDTLSISND 536 (912)
Q Consensus 471 ----------~l~~~p~~l~~~l~~l~~~-l~~--~~v~~~A~~al~~l~~~~~~~L~-~~~~~ll~~~~~l~~~~~~~~ 536 (912)
.++..|.|..++++-++.. +.+ +.++..|++||.++...-.+.+. -+++.+++... . .+.+
T Consensus 523 rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l---s--~~~~ 597 (1133)
T KOG1943|consen 523 RSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTL---S--KDAS 597 (1133)
T ss_pred hhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc---C--CChH
Confidence 2333467778888877753 554 55889999999999888777766 45666665532 2 2344
Q ss_pred HHHHHHHHHHHHHhcC
Q psy6178 537 AAIGLLKGVAIIVSDM 552 (912)
Q Consensus 537 ~~~~l~eai~~vi~~~ 552 (912)
.+...+-+.|.|+.+.
T Consensus 598 ~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 598 MRHGVFLAAGEVIGAL 613 (1133)
T ss_pred HhhhhHHHHHHHHHHh
Confidence 6788888888888764
No 101
>KOG4653|consensus
Probab=79.82 E-value=97 Score=36.96 Aligned_cols=158 Identities=13% Similarity=0.155 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcC-c
Q psy6178 398 TCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKH-P 476 (912)
Q Consensus 398 ~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~-p 476 (912)
.++....+.+.. ..++-.+ .|+.++.++.|- ..++.++.+...-.+......+.-|...=++|++|..-...- -
T Consensus 768 kvl~i~ld~Lkd-edsyvyL-naI~gv~~Lcev---y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~ 842 (982)
T KOG4653|consen 768 KVLAIALDTLKD-EDSYVYL-NAIRGVVSLCEV---YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF 842 (982)
T ss_pred HHHHHHHHHhcc-cCceeeH-HHHHHHHHHHHh---cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHH
Confidence 455555555542 2333322 334444455554 345667777664333221111111111114444444322110 2
Q ss_pred CcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCH
Q psy6178 477 HTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQ 554 (912)
Q Consensus 477 ~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~ 554 (912)
.|...+++.+++|+++|+ .+.+++..+..+|+..+-.+..++-.....+..+....-+.-.|...+.-+...+..+.
T Consensus 843 ~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg- 921 (982)
T KOG4653|consen 843 KYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG- 921 (982)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc-
Confidence 467789999999999997 57888889999998877666665555555555554433344456667777777666654
Q ss_pred HHHHHHH
Q psy6178 555 DQISEAL 561 (912)
Q Consensus 555 ~~~~~~l 561 (912)
++..+.+
T Consensus 922 ~dlLpil 928 (982)
T KOG4653|consen 922 EDLLPIL 928 (982)
T ss_pred hhhHHHH
Confidence 3333433
No 102
>KOG2022|consensus
Probab=79.49 E-value=1.5e+02 Score=35.64 Aligned_cols=162 Identities=7% Similarity=0.029 Sum_probs=92.5
Q ss_pred CCC---hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q psy6178 492 QPG---LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQ 568 (912)
Q Consensus 492 ~~~---v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~ 568 (912)
+|. ...++++.|..+.+.......+.++.+++....+.-.....+-.....+.+|....-+.. -..++...+.-+
T Consensus 477 ~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e--~P~~ln~sl~~L 554 (982)
T KOG2022|consen 477 DPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGE--HPMYLNPSLPLL 554 (982)
T ss_pred CchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhc--CCcccCchHHHH
Confidence 564 556788888888888888888888888887654321112222223333444443332211 112333333333
Q ss_pred HHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHH
Q psy6178 569 VKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLR 648 (912)
Q Consensus 569 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~ 648 (912)
++.+. . +++ -...+..+.++.+.... .+.++...++.+...++.+.......+.++.++++
T Consensus 555 ~~~Lh----~---sk~-----s~q~i~tl~tlC~~C~~-------~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIG 615 (982)
T KOG2022|consen 555 FQGLH----N---SKE-----SEQAISTLKTLCETCPE-------SLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIG 615 (982)
T ss_pred HHHhc----C---chH-----HHHHHHHHHHHHHhhhh-------hCchHHHHHHHHHHHHhcccccCchHHHHHHHHHH
Confidence 33332 1 111 12345557777776653 24567777777777777765555667888999999
Q ss_pred HHHHHhchh-hHHhHHHHHHHHHHHHh
Q psy6178 649 YAIRCVGKD-FAHLLEPLVKQIVVLYS 674 (912)
Q Consensus 649 ~~~~~l~~~-~~p~l~~l~~~l~~~~~ 674 (912)
..+..+..+ ...|+-.+++.+.+..+
T Consensus 616 yvls~~~pEe~~kyl~~lin~il~qle 642 (982)
T KOG2022|consen 616 YVLSRLKPEEIPKYLMKLINPILSQLE 642 (982)
T ss_pred HHHHhccHHhHHHHHHHHHHHHHHHHH
Confidence 988887633 34466555555554443
No 103
>PRK09687 putative lyase; Provisional
Probab=78.55 E-value=92 Score=32.70 Aligned_cols=112 Identities=12% Similarity=-0.010 Sum_probs=66.9
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHHHHHHH
Q psy6178 11 YAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDS 90 (912)
Q Consensus 11 ~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~~lk~~ 90 (912)
...+..|. .+|...|..|...|.++. +++++..+..++.+. + +.+|.+|+..|-.- .. +.......-..
T Consensus 26 ~~L~~~L~-d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~~-d--~~vR~~A~~aLg~l-g~-----~~~~~~~a~~~ 94 (280)
T PRK09687 26 DELFRLLD-DHNSLKRISSIRVLQLRG-GQDVFRLAIELCSSK-N--PIERDIGADILSQL-GM-----AKRCQDNVFNI 94 (280)
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhCC-C--HHHHHHHHHHHHhc-CC-----CccchHHHHHH
Confidence 33444444 468889999999997665 688899999988774 4 89999999999852 11 11111112222
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHhhccCc-chHHHHHHHHhc
Q psy6178 91 LIEHLCRTNDTSGKNIITQLALALADLALQMSAW-EKPVVYIIEKLS 136 (912)
Q Consensus 91 Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~~~W-~~~~~~l~~~~~ 136 (912)
|...+.+ ...+ .||...+.+|+.+......| +..+..+...+.
T Consensus 95 L~~l~~~--D~d~-~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~ 138 (280)
T PRK09687 95 LNNLALE--DKSA-CVRASAINATGHRCKKNPLYSPKIVEQSQITAF 138 (280)
T ss_pred HHHHHhc--CCCH-HHHHHHHHHHhcccccccccchHHHHHHHHHhh
Confidence 2222211 1333 67888887777765444444 455555544443
No 104
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=77.35 E-value=92 Score=37.23 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=42.4
Q ss_pred CCchHHHHHHHHHHHHHhCCccc---cCchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhhc
Q psy6178 725 HPDTVDDLFRLCTRFLQRAPIAF---LTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHN 785 (912)
Q Consensus 725 ~pd~~~~~f~l~~~~l~~~p~~~---l~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~ 785 (912)
.|+-.-..+.|+..++++.|.-+ ...+++..++.|. ..-.+..++.+|+.++.-++-.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L---~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCL---QFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHH---hhcccHHHHHHHHHHHHHHhcc
Confidence 46777788899999999998765 3567888888865 2233455677888888877754
No 105
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=75.70 E-value=74 Score=30.13 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHH
Q psy6178 593 WLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAI 651 (912)
Q Consensus 593 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~ 651 (912)
.+..+..+|+.++. .+.+++.+++|.+...+... ++...|....-+...+
T Consensus 107 vv~ai~~If~~l~~-------~cv~~L~~viP~~l~~i~~~--~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 107 VVQAIMYIFKSLGL-------KCVPYLPQVIPIFLRVIRTC--PDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHhcCc-------CchhHHHHHhHHHHHHHHhC--CHHHHHHHHHHHHHHH
Confidence 45666677776654 35788888888888877753 2255565554444443
No 106
>KOG1020|consensus
Probab=74.02 E-value=2.7e+02 Score=35.84 Aligned_cols=395 Identities=11% Similarity=0.021 Sum_probs=0.0
Q ss_pred CccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCC
Q psy6178 413 MWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQ 492 (912)
Q Consensus 413 ~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~ 492 (912)
+|-..|-..--+........--.+..-+. +.....+....+.+-......+..|...-..-...+.+.|..++..++.
T Consensus 750 ~~~~~el~~~~v~~~~n~~K~~~~~Ik~~--~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e 827 (1692)
T KOG1020|consen 750 HWFSFELAYEKVITVENELKYILSKIKDK--EKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGE 827 (1692)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhcch--hhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcC
Q ss_pred CC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHH
Q psy6178 493 PG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVK 570 (912)
Q Consensus 493 ~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~ 570 (912)
|. +++.|-+++..+.+. .+.+....+.-......+.+. +...|+.+++-+|..+-+-| +-...|+.++.+-+.
T Consensus 828 ~~ialRtkAlKclS~ive~-Dp~vL~~~dvq~~Vh~R~~Ds--sasVREAaldLvGrfvl~~~-e~~~qyY~~i~erIl- 902 (1692)
T KOG1020|consen 828 NAIALRTKALKCLSMIVEA-DPSVLSRPDVQEAVHGRLNDS--SASVREAALDLVGRFVLSIP-ELIFQYYDQIIERIL- 902 (1692)
T ss_pred chHHHHHHHHHHHHHHHhc-ChHhhcCHHHHHHHHHhhccc--hhHHHHHHHHHHhhhhhccH-HHHHHHHHHHHhhcC-
Q ss_pred HHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchh-HHHHHHHHHHH
Q psy6178 571 PLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDAR-VMEHSSRCLRY 649 (912)
Q Consensus 571 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-v~e~~~~~~~~ 649 (912)
+.+ ....-..|..+..+...... +..+..+..+++....+++. |.+-+|..+-.
T Consensus 903 ------------Dtg-vsVRKRvIKIlrdic~e~pd------------f~~i~~~cakmlrRv~DEEg~I~kLv~etf~k 957 (1692)
T KOG1020|consen 903 ------------DTG-VSVRKRVIKILRDICEETPD------------FSKIVDMCAKMLRRVNDEEGNIKKLVRETFLK 957 (1692)
T ss_pred ------------CCc-hhHHHHHHHHHHHHHHhCCC------------hhhHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q ss_pred H-------HHHhchhhHHhHHHHHHHHHHHHhcCCCcchHHhHHHHHHHhcC-ccchHHHHHHHHHHhHHHHHhhcCc--
Q psy6178 650 A-------IRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYAT-SHCVSGLLDMVQAFLPPTYAILQEE-- 719 (912)
Q Consensus 650 ~-------~~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~-~~~~~~l~~l~~~l~~~~~~~l~~~-- 719 (912)
. . ......+.-++..++.+...+ .-..+|+.=+-.-+-.++. -......+...-..+.++..++...
T Consensus 958 lWF~p~~~~-~d~~~~~~kI~~~~~vv~~~~--d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~ 1034 (1692)
T KOG1020|consen 958 LWFTPVPEV-NDQPAKARKISLEVDVVMSQV--DLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLV 1034 (1692)
T ss_pred HhccCCCcc-cccHHHHHhhHHHHHHHHHHH--HHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHH
Q ss_pred ----------CCCCCCCchHHHHHHHHHHHHHhCCccccCchh--hHHHHHHHHHhcccCCchhHHHHHHHHHHHhhccC
Q psy6178 720 ----------DGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSF--ISSVMQCGILATHLDHREANSTVMKFFYDLIHNNR 787 (912)
Q Consensus 720 ----------~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~~~--l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~ 787 (912)
..-.+.-.-...|...+..+.+-.|..+.++.. +++.+... |-+..+......+...+...+-...
T Consensus 1035 ~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~--~~t~~~~~fl~~vi~Ile~VlPlv~ 1112 (1692)
T KOG1020|consen 1035 EKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSK--ASTIEEAQFLYYVIQILECVLPLVA 1112 (1692)
T ss_pred HHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhcc--ccchHHHHHHHHHHHHHHHHhhhhc
Q ss_pred CCCcccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccccCCC--cchhhHHHHHHHHHHhCh
Q psy6178 788 VLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHT--YMMADVADVLYELISVDR 854 (912)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~~~~~--~~~~~~a~vL~~l~~~~~ 854 (912)
..+ ..-.+.+...+...+..+|.+.|..++..++.-+-+ ....-+-+++-.+.+..+
T Consensus 1113 ~~s----------esfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le 1171 (1692)
T KOG1020|consen 1113 NPS----------ESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLE 1171 (1692)
T ss_pred cch----------HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
No 107
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=73.82 E-value=1.6e+02 Score=33.06 Aligned_cols=269 Identities=15% Similarity=0.165 Sum_probs=148.5
Q ss_pred HhHHHHHhhhHhcCcH---HHHHHHHHHhhc--------CCCC--ccchhHHHHHHHHhhcccCCCC-----cCcHHHHH
Q psy6178 382 KVSELVKDVVFIVGSS---TCFRHMFNSLHE--------NNVM--WEQTEAALYIMQSVAKNVLPEE-----NDVVPKVV 443 (912)
Q Consensus 382 ~~~d~l~~~~~~l~~~---~~l~~l~~~l~~--------~~~~--w~~~Ea~L~~l~~iae~~~~~~-----~~~l~~l~ 443 (912)
.+++++..++..++.+ .++..++..+.. ...+ +..-.-.+..+.++-.+++.+. .+.+..++
T Consensus 116 ~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~ 195 (415)
T PF12460_consen 116 LLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLL 195 (415)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHH
Confidence 4666777777666654 244444443331 1111 1122233444445555555432 12344444
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHhhhhhhhcHHH
Q psy6178 444 EAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCL---QQPGLASVTANALQSISTACCTHMVGHFNG 520 (912)
Q Consensus 444 ~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l---~~~~v~~~A~~al~~l~~~~~~~L~~~~~~ 520 (912)
...... .++..|..++++++.+..=+. ..+.+..++..+...+ ..+..+..+-..+.-+.+..--.-.|....
T Consensus 196 ~~~~~~---~~~~~~~~~~~~la~LvNK~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~ 271 (415)
T PF12460_consen 196 NLALSS---EDEFSRLAALQLLASLVNKWP-DDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATE 271 (415)
T ss_pred HHHHcC---CChHHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHH
Confidence 443332 247888888888876554211 2346777787777666 123345555555555555433333344444
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCH-------H-HHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHH
Q psy6178 521 LLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQ-------D-QISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVI 592 (912)
Q Consensus 521 ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~-------~-~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~ 592 (912)
+++.+..+.+. .+....+-++.+.+++-.+. . -+.-|-+++..-++..+.+-.... +.. .-..
T Consensus 272 ~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~---~~~---~k~~ 342 (415)
T PF12460_consen 272 LLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA---DDE---IKSN 342 (415)
T ss_pred HHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc---Chh---hHHH
Confidence 55444433321 22345667777777765321 1 112233444444444443333322 111 1234
Q ss_pred HHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHH
Q psy6178 593 WLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVV 671 (912)
Q Consensus 593 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~ 671 (912)
++..++.+.+++.. ..+.+.+.+++|++.+.+.. .|.++...+...+...++.-.+.+.+++..+++.++.
T Consensus 343 yL~ALs~ll~~vP~------~vl~~~l~~LlPLLlqsL~~--~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 343 YLTALSHLLKNVPK------SVLLPELPTLLPLLLQSLSL--PDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHhhCCH------HHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 67888999887753 24567788999998888753 5777888999999888887766777888887776653
No 108
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=71.56 E-value=2.7 Score=39.15 Aligned_cols=50 Identities=24% Similarity=0.342 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCChHHHHHHHH
Q psy6178 454 HIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANAL 503 (912)
Q Consensus 454 ~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~v~~~A~~al 503 (912)
++.+...++.+++.|..|+....-.-..+++.+++.+++|.++..|+.+|
T Consensus 99 ~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 99 NEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 38889999999999998875321001236777777788899988888764
No 109
>KOG1061|consensus
Probab=71.41 E-value=2.2e+02 Score=33.70 Aligned_cols=151 Identities=15% Similarity=0.141 Sum_probs=68.4
Q ss_pred CCCccchhHHHHHHHHhhcccCCC-CcCcHHHHHHH-HhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy6178 411 NVMWEQTEAALYIMQSVAKNVLPE-ENDVVPKVVEA-ILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLH 488 (912)
Q Consensus 411 ~~~w~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~-l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~ 488 (912)
+.+-..+=.|+.++..|.+.=+.. ......+++.- +..++ ...-..-+.++...+++..+.+.-+..+++.+..
T Consensus 171 D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~----ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p 246 (734)
T KOG1061|consen 171 DSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALN----ECTEWGQIFILDCLAEYVPKDSREAEDICERLTP 246 (734)
T ss_pred CCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH----HhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhh
Confidence 444444556666777666653221 11222333332 22222 2222233344444455554444345566666666
Q ss_pred hcCC--CChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHH-Hhhhc-CCChHHHHHHHHHHHHHHhcCCHH---HHHHHH
Q psy6178 489 CLQQ--PGLASVTANALQSISTACCTHMVGHFNGLLQIIQ-CLDTL-SISNDAAIGLLKGVAIIVSDMPQD---QISEAL 561 (912)
Q Consensus 489 ~l~~--~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~-~l~~~-~~~~~~~~~l~eai~~vi~~~p~~---~~~~~l 561 (912)
.+.+ +.|.-.|-+.+..+...... +...++..+. ++... ....+.+.-.+.-+..++...|.- +....+
T Consensus 247 ~Lqh~n~avvlsavKv~l~~~~~~~~----~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff 322 (734)
T KOG1061|consen 247 RLQHANSAVVLSAVKVILQLVKYLKQ----VNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFF 322 (734)
T ss_pred hhccCCcceEeehHHHHHHHHHHHHH----HHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeee
Confidence 6665 34666777777766554333 1222222222 11111 001234555666677777666641 223334
Q ss_pred HHHHHHhH
Q psy6178 562 KQLCLVQV 569 (912)
Q Consensus 562 ~~l~~p~~ 569 (912)
-++.+|+.
T Consensus 323 ~kynDPiY 330 (734)
T KOG1061|consen 323 CKYNDPIY 330 (734)
T ss_pred eecCCchh
Confidence 44445554
No 110
>KOG1967|consensus
Probab=69.75 E-value=72 Score=38.29 Aligned_cols=179 Identities=16% Similarity=0.263 Sum_probs=95.7
Q ss_pred HhcCcCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhh--c-----------HHHHHHHHHHhhhcCCChHHH
Q psy6178 472 IDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVG--H-----------FNGLLQIIQCLDTLSISNDAA 538 (912)
Q Consensus 472 l~~~p~~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~~~~~L~~--~-----------~~~ll~~~~~l~~~~~~~~~~ 538 (912)
+++||+-.+-. ..++..+.+|++...|+++|.=+..||...+.. | +..++..+..... ..+...+
T Consensus 807 ~R~~~~s~~ia-~klld~Ls~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~-t~~~~~K 884 (1030)
T KOG1967|consen 807 LRNHPESSEIA-EKLLDLLSGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFE-TAPGSQK 884 (1030)
T ss_pred HcCCcccchHH-HHHHHhcCCccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhc-cCCccch
Confidence 44566554443 345566888999999999999998876653321 1 1222222221111 1233357
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCCh-HH
Q psy6178 539 IGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPC-QG 617 (912)
Q Consensus 539 ~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~-~~ 617 (912)
....+++++|+..+|.....+-+..++.-+++.|. -++.. .....+.++.....-. +++ ..
T Consensus 885 ~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls-------~~D~~---v~vstl~~i~~~l~~~--------~tL~t~ 946 (1030)
T KOG1967|consen 885 HNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALS-------MPDVI---VRVSTLRTIPMLLTES--------ETLQTE 946 (1030)
T ss_pred hHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcC-------CCccc---hhhhHhhhhhHHHHhc--------cccchH
Confidence 88999999999999965444444444333333221 12211 1123344444332211 111 12
Q ss_pred HHHhHhHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHh-chhhHHhHHHHHHHHH
Q psy6178 618 VITELWPVLSKTCETYQQD-ARVMEHSSRCLRYAIRCV-GKDFAHLLEPLVKQIV 670 (912)
Q Consensus 618 ~~~~~~~~l~~~l~~~~~~-~~v~e~~~~~~~~~~~~l-~~~~~p~l~~l~~~l~ 670 (912)
....+.|.+..+-....++ ..|++.+-.|+...-+.+ .....||-+.++..+.
T Consensus 947 ~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~ 1001 (1030)
T KOG1967|consen 947 HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALI 1001 (1030)
T ss_pred HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhh
Confidence 3455566655543322222 567888888888776643 2345666666665443
No 111
>KOG2753|consensus
Probab=67.23 E-value=1.7e+02 Score=30.84 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=57.2
Q ss_pred cCcHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhh--hhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcC
Q psy6178 476 PHTLETILNFLLHCLQQPG-LASVTANALQSISTACCT--HMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDM 552 (912)
Q Consensus 476 p~~l~~~l~~l~~~l~~~~-v~~~A~~al~~l~~~~~~--~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~ 552 (912)
|.....+|..++.++.+|. ++-..-.++..+|.+|+. .+.|.++.+=+.+ ..++++.+++..++.++..++..-
T Consensus 102 ~~l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~l---kew~~~vedqrel~r~v~~al~~~ 178 (378)
T KOG2753|consen 102 ASLRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWL---KEWNISVEDQRELLRAVHKALKDN 178 (378)
T ss_pred cccHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHHhc
Confidence 4567788889999999887 888899999999999884 4556555444333 355678888999999999988654
Q ss_pred C
Q psy6178 553 P 553 (912)
Q Consensus 553 p 553 (912)
.
T Consensus 179 k 179 (378)
T KOG2753|consen 179 K 179 (378)
T ss_pred c
Confidence 3
No 112
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=66.18 E-value=1.8e+02 Score=33.07 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=75.9
Q ss_pred CccHHHHHHHHHHhccCCChhhHHHHHHHHHHh-hcChhHHHHHH----HHhccCCCcchHHHHHHHHHHHHHhhcccCC
Q psy6178 4 QPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQL-QKSIYAWKIAD----EMLLHQNELGLEAVYFSAQTMRQKVQNAFFE 78 (912)
Q Consensus 4 ~~~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~-q~s~~aw~~~~----~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~ 78 (912)
++.++++.++++.+..++....|=.|-..|+++ ++.|+-..+|. .|++..+ -.+-.||-.||-+ +
T Consensus 298 ~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~N---r~IstyAITtLLK---T---- 367 (898)
T COG5240 298 SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDEN---RTISTYAITTLLK---T---- 367 (898)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhccc---ccchHHHHHHHHH---c----
Confidence 567888888999988888778888888888765 45777766663 4444432 5677788766642 2
Q ss_pred CCcccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhcc-CcchHHHHHHHHhcc
Q psy6178 79 LPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS-AWEKPVVYIIEKLSH 137 (912)
Q Consensus 79 l~~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~~-~W~~~~~~l~~~~~~ 137 (912)
-.++....|-+.+-+.+...+.+= |.| ...++-.+...+| .|...+..+.+.+..
T Consensus 368 Gt~e~idrLv~~I~sfvhD~SD~F-KiI---~ida~rsLsl~Fp~k~~s~l~FL~~~L~~ 423 (898)
T COG5240 368 GTEETIDRLVNLIPSFVHDMSDGF-KII---AIDALRSLSLLFPSKKLSYLDFLGSSLLQ 423 (898)
T ss_pred CchhhHHHHHHHHHHHHHhhccCc-eEE---eHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence 233455555555555554433221 222 2345555666777 688888887776644
No 113
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=65.63 E-value=1.7e+02 Score=30.28 Aligned_cols=237 Identities=14% Similarity=0.071 Sum_probs=124.2
Q ss_pred CCCccchhHHHHHHHHhhcccCCC--CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy6178 411 NVMWEQTEAALYIMQSVAKNVLPE--ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLH 488 (912)
Q Consensus 411 ~~~w~~~Ea~L~~l~~iae~~~~~--~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~ 488 (912)
+.++..++-++.+|..+-+.++.+ ....+.-++.....--. .++.+..+ +..+.+..+.=.-.++....++..+++
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~-D~~~~~~~-l~gl~~L~~~~~~~~~~~~~i~~~l~~ 87 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD-DHACVQPA-LKGLLALVKMKNFSPESAVKILRSLFQ 87 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc-cHhhHHHH-HHHHHHHHhCcCCChhhHHHHHHHHHH
Confidence 456777889999999999998754 23445666666544332 34444333 444444332211124557777777777
Q ss_pred hcCCCC----hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy6178 489 CLQQPG----LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQL 564 (912)
Q Consensus 489 ~l~~~~----v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l 564 (912)
..+.+. .|..+-.-+..+.+.-...+...-+.++..+....+++-++..-..+++-+-.++...+. ..+
T Consensus 88 ~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-------~~~ 160 (262)
T PF14500_consen 88 NVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-------SEF 160 (262)
T ss_pred hCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-------chh
Confidence 665433 555566666666666666665555666666555444434444445555555555555542 222
Q ss_pred HHHhHHHHHHHHHhc-CCCCCC-CCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHH
Q psy6178 565 CLVQVKPLCELIEKQ-IKPEKN-KKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEH 642 (912)
Q Consensus 565 ~~p~~~~l~~~~~~~-~~~~~~-~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~ 642 (912)
.+.+.+-+...-.-. .+|.++ +..- ...| -.++-+.+.. +| .+...++|.+.+=+. .+++.+...
T Consensus 161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT-~edL--k~~L~~cl~s------~~--~fa~~~~p~LleKL~--s~~~~~K~D 227 (262)
T PF14500_consen 161 AEDLFDVFSCYFPITFRPPPNDPYGIT-REDL--KRALRNCLSS------TP--LFAPFAFPLLLEKLD--STSPSVKLD 227 (262)
T ss_pred HHHHHHHhhheeeeeeeCCCCCCCCCC-HHHH--HHHHHHHhcC------cH--hhHHHHHHHHHHHHc--CCCcHHHHH
Confidence 222222222222211 111111 1111 1111 1111112221 12 134556676555333 345667788
Q ss_pred HHHHHHHHHHHhchh-hHHhHHHHHHHH
Q psy6178 643 SSRCLRYAIRCVGKD-FAHLLEPLVKQI 669 (912)
Q Consensus 643 ~~~~~~~~~~~l~~~-~~p~l~~l~~~l 669 (912)
+...+..++..+|.. +.|+..++-+.+
T Consensus 228 ~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 228 SLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 888888888888854 677777766554
No 114
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=64.50 E-value=2.4e+02 Score=31.52 Aligned_cols=235 Identities=15% Similarity=0.181 Sum_probs=95.5
Q ss_pred CCccchhHHHHHHHHhhcccCCC-CcCcHH-HHHHHHhcCCCCchHHHHHHHHHHHHH-HHHHHhcCcCcHHHHHHHHHH
Q psy6178 412 VMWEQTEAALYIMQSVAKNVLPE-ENDVVP-KVVEAILHLPPSTHIAVRYTSLLLLGE-LCEWIDKHPHTLETILNFLLH 488 (912)
Q Consensus 412 ~~w~~~Ea~L~~l~~iae~~~~~-~~~~l~-~l~~~l~~~~~~~~~~v~~t~~~~lg~-y~~~l~~~p~~l~~~l~~l~~ 488 (912)
+.|..+....-.+..+.+..+.+ ...++. +++..|..+-.+++|+-|.....++-+ |..+....+-....+-+.+.+
T Consensus 102 ~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~ 181 (409)
T PF01603_consen 102 PSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYR 181 (409)
T ss_dssp TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred cccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45665555554555444442211 111232 344444444444578888887777777 344433323222222233333
Q ss_pred hcCC---CChHHHHHHHHHHHHHHhhhhhhhcHHHHH-HHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy6178 489 CLQQ---PGLASVTANALQSISTACCTHMVGHFNGLL-QIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQL 564 (912)
Q Consensus 489 ~l~~---~~v~~~A~~al~~l~~~~~~~L~~~~~~ll-~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l 564 (912)
.+.+ +.-....-.-+.++..+....+.+....++ ..+.++-..+.-..-...+..++...+..-|. +
T Consensus 182 fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~---------l 252 (409)
T PF01603_consen 182 FIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS---------L 252 (409)
T ss_dssp HHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG---------G
T ss_pred HhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---------h
Confidence 3332 222233333344444433333333222222 23333322211111133455555555554431 2
Q ss_pred HHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHH
Q psy6178 565 CLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSS 644 (912)
Q Consensus 565 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~ 644 (912)
..+++.. ++.-. |... ...-...|+-+..++..+.+ ..+..+...++..+...+. +.+..|.|++.
T Consensus 253 ~~~~i~~---llk~W--P~t~-s~Kev~FL~el~~il~~~~~------~~f~~i~~~lf~~la~ci~--S~h~qVAErAl 318 (409)
T PF01603_consen 253 AEPVIKG---LLKHW--PKTN-SQKEVLFLNELEEILEVLPP------EEFQKIMVPLFKRLAKCIS--SPHFQVAERAL 318 (409)
T ss_dssp HHHHHHH---HHHHS---SS--HHHHHHHHHHHHHHHTT--H------HHHHHHHHHHHHHHHHHHT--SSSHHHHHHHH
T ss_pred HHHHHHH---HHHhC--CCCC-chhHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 2333322 22323 1111 00113356666777665543 1233344434433333333 35678899998
Q ss_pred HHHHH--HHHHhchhhHHhHHHHHHHH
Q psy6178 645 RCLRY--AIRCVGKDFAHLLEPLVKQI 669 (912)
Q Consensus 645 ~~~~~--~~~~l~~~~~p~l~~l~~~l 669 (912)
.+|.. .+..+.......+|-+++.+
T Consensus 319 ~~w~n~~~~~li~~~~~~i~p~i~~~L 345 (409)
T PF01603_consen 319 YFWNNEYFLSLISQNSRVILPIIFPAL 345 (409)
T ss_dssp GGGGSHHHHHHHHCTHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHhChHHHHHHHHHHH
Confidence 88743 24433333334444444443
No 115
>KOG0168|consensus
Probab=62.43 E-value=3.5e+02 Score=32.64 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=46.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhh----hhhhhc-HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCH
Q psy6178 483 LNFLLHCLQQPGLASVTANALQSISTACC----THMVGH-FNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQ 554 (912)
Q Consensus 483 l~~l~~~l~~~~v~~~A~~al~~l~~~~~----~~L~~~-~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~ 554 (912)
++.|+.+++...=-...-.|+..+|+... ..|..+ ++.++..+..+.+.+...+.+...+.|+.++..++|.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 45566667654223455667888887643 233332 3555555555555444566788889999999999985
No 116
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=62.20 E-value=19 Score=37.54 Aligned_cols=93 Identities=16% Similarity=0.265 Sum_probs=64.5
Q ss_pred cchhHHHHHHHHhhcccCC---C--CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCc--CcHHHHHHHHH
Q psy6178 415 EQTEAALYIMQSVAKNVLP---E--ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHP--HTLETILNFLL 487 (912)
Q Consensus 415 ~~~Ea~L~~l~~iae~~~~---~--~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p--~~l~~~l~~l~ 487 (912)
...|-++++|+.+|..-.. . ....+..++.++.+.. .|..+.+.+.|+++.+|+==...| ..+..+++.+.
T Consensus 172 ~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~--~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~ 249 (526)
T COG5064 172 DVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA--IHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILA 249 (526)
T ss_pred HHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc--chHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHH
Confidence 4568899999998864321 1 2345666777765432 477788889999998886322223 35777788777
Q ss_pred Hhc--CCCChHHHHHHHHHHHHHH
Q psy6178 488 HCL--QQPGLASVTANALQSISTA 509 (912)
Q Consensus 488 ~~l--~~~~v~~~A~~al~~l~~~ 509 (912)
+-+ .+|++..-||+|+..+.+.
T Consensus 250 KLiys~D~evlvDA~WAiSYlsDg 273 (526)
T COG5064 250 KLIYSRDPEVLVDACWAISYLSDG 273 (526)
T ss_pred HHHhhcCHHHHHHHHHHHHHhccC
Confidence 644 4688999999999998765
No 117
>KOG1525|consensus
Probab=62.06 E-value=4.5e+02 Score=33.87 Aligned_cols=230 Identities=13% Similarity=0.179 Sum_probs=116.0
Q ss_pred HHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHh---hccchhHHHHHHHHHHHHHHHhchhh---HHhHHHHH
Q psy6178 593 WLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCET---YQQDARVMEHSSRCLRYAIRCVGKDF---AHLLEPLV 666 (912)
Q Consensus 593 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~v~e~~~~~~~~~~~~l~~~~---~p~l~~l~ 666 (912)
.+++|..++..+..-. +++ ...+.+.|+...+... -+.|.+|+--+.-|+..++|.+-.+. .+++-.+.
T Consensus 22 ll~rLk~l~~~l~~~~---qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf 96 (1266)
T KOG1525|consen 22 LLKRLKKLANCLASLD---QDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIF 96 (1266)
T ss_pred HHHHHHHHHHHHhhcc---cCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 4666666666554321 233 3456677777777664 24577787777778888888765431 22444555
Q ss_pred HHHHHHHhcCCCcchHHhHHHHHHHhcCccchHH---HHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHh-
Q psy6178 667 KQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSG---LLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQR- 742 (912)
Q Consensus 667 ~~l~~~~~~~~~~~~L~~~~~lv~~~g~~~~~~~---l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~- 742 (912)
..++..|. ..|+ ...|. ...+++.+...-+.++- ...+..|++.++|++...+++.
T Consensus 97 ~~~~~q~~----------------gL~d-~~sp~f~r~~~lletl~~~k~~l~~---~l~d~~e~~~~~f~~f~d~~~~~ 156 (1266)
T KOG1525|consen 97 QLILSQFS----------------GLGD-VESPYFKRYFYLLETLAKVKFCLLM---LLEDCQELVHELFRTFFDLARKG 156 (1266)
T ss_pred HHHHHHHh----------------hccC-CCCcchhhHHHHHHHHHHhHHHhee---eccchHHHHHHHHHHHHHHHhcc
Confidence 55554442 1222 11111 12233333322222221 1234567899999999999955
Q ss_pred CCccccCchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhhccCCCCcccCccccCCCCchHHHHHHHHHHHHHhh---
Q psy6178 743 APIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHG--- 819 (912)
Q Consensus 743 ~p~~~l~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--- 819 (912)
+|..++. +.+.+..-++.-+.-.....--.|.+|+...++.- +.+. .....++...+
T Consensus 157 ~~~~v~~------~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~-----------~~a~---~la~~li~~~a~~~ 216 (1266)
T KOG1525|consen 157 HPKKVFN------MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTI-----------KEAD---KLASDLIERCADNL 216 (1266)
T ss_pred ccHHHHH------HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCcc-----------HHHH---HHHHHHHHHhhhhh
Confidence 4554433 33333322332222222333334566665543321 0011 11122222222
Q ss_pred -HHHHHHHHHHccccCCC--cchhhHHHHHHHHHHhChHHHHHHHHHHHhc
Q psy6178 820 -QALVSNLLQACVFSLHT--YMMADVADVLYELISVDRQVSNQWLQDTISQ 867 (912)
Q Consensus 820 -~~lv~~ll~~~~~~~~~--~~~~~~a~vL~~l~~~~~~~~~~wl~~~l~~ 867 (912)
..+-+-+...+++..++ +....+-++++.|+...|+.+...+.+.-..
T Consensus 217 ~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~e 267 (1266)
T KOG1525|consen 217 EDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFE 267 (1266)
T ss_pred chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22222333334443333 5678889999999999998776665554333
No 118
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=59.98 E-value=1.7e+02 Score=28.33 Aligned_cols=104 Identities=19% Similarity=0.238 Sum_probs=60.9
Q ss_pred CCC--ChHHHHHHHHHHHHHHhhhhh-------------hhcHHHH----HHHHHHh---hhcCCChHHHHHHHHHHHHH
Q psy6178 491 QQP--GLASVTANALQSISTACCTHM-------------VGHFNGL----LQIIQCL---DTLSISNDAAIGLLKGVAII 548 (912)
Q Consensus 491 ~~~--~v~~~A~~al~~l~~~~~~~L-------------~~~~~~l----l~~~~~l---~~~~~~~~~~~~l~eai~~v 548 (912)
.|| +++..|+.++..+-+.++..| .++...+ ++....+ .+.+-.......++++++.+
T Consensus 50 ~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~L 129 (182)
T PF13251_consen 50 KDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVL 129 (182)
T ss_pred cCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 455 499999999999887765433 2222222 2222222 12222333567899999999
Q ss_pred HhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhh
Q psy6178 549 VSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKH 603 (912)
Q Consensus 549 i~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 603 (912)
+++.|-++.. .+++.+++..+...+... +. ......+.+++.++..
T Consensus 130 v~~tPY~rL~---~~ll~~~v~~v~~~l~~~---d~---~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 130 VQATPYHRLP---PGLLTEVVTQVRPLLRHR---DP---NVRVAALSCLGALLSV 175 (182)
T ss_pred HccCChhhcC---HhHHHHHHHHHHHHHhcC---CC---cHHHHHHHHHHHHHcC
Confidence 9999876644 355666666666666553 11 1224456667766554
No 119
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=59.56 E-value=1.6e+02 Score=27.86 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCCC---hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHh
Q psy6178 481 TILNFLLHCLQQPG---LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVS 550 (912)
Q Consensus 481 ~~l~~l~~~l~~~~---v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~ 550 (912)
-+++.+.+-+.||. ....+..|+..+.+..+..-.||++.++..+...... .+...++.++.-++.++.
T Consensus 86 vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~-~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 86 VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRT-CPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHh-CCHHHHHHHHHHHHHHHH
Confidence 45666777777765 4457888888888776555588888888777654432 233456777777777654
No 120
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=58.78 E-value=1.1e+02 Score=25.79 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=47.5
Q ss_pred HHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHH
Q psy6178 483 LNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQD 555 (912)
Q Consensus 483 l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~ 555 (912)
++..+..+.+|. ++..+-..++++++... .-....+.++..+.....-+ .+=.-.+++.|++.++...|.+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHH
Confidence 444555567765 88999999999988766 33445677777665433321 1224678899999998888753
No 121
>KOG1078|consensus
Probab=58.15 E-value=1.1e+02 Score=35.99 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=88.3
Q ss_pred hHHHHHhHhHHHHHhhhHhcCc--HHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC--CcCcHHHHHHHHhcCC
Q psy6178 375 DFYDFRLKVSELVKDVVFIVGS--STCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE--ENDVVPKVVEAILHLP 450 (912)
Q Consensus 375 ~f~~~R~~~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~--~~~~l~~l~~~l~~~~ 450 (912)
.+-+|.+++-|++.+++.-... +.-+.++...++. .+..+-+.+.+.-+|..++.. .+.++..+.+-+. +
T Consensus 404 Gg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIED----ce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi-L- 477 (865)
T KOG1078|consen 404 GGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIED----CEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI-L- 477 (865)
T ss_pred cCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHh----ccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhh-h-
Confidence 3445667777777776653332 2346677776652 233456677777777766543 3456666665321 1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhc
Q psy6178 451 PSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGH 517 (912)
Q Consensus 451 ~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~ 517 (912)
.+..+|.++..++..++ ...+...+++...+-+++.|++ ++.+|..++..+-+.-.....++
T Consensus 478 --En~ivRaaAv~alaKfg---~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~~l~~~~ 541 (865)
T KOG1078|consen 478 --ENAIVRAAAVSALAKFG---AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDDVLNQNY 541 (865)
T ss_pred --hhhhhHHHHHHHHHHHh---cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 36789999999988877 5678888999999999998864 99999999998874433333344
No 122
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=57.95 E-value=1.4e+02 Score=33.95 Aligned_cols=120 Identities=12% Similarity=0.177 Sum_probs=76.8
Q ss_pred HHhHhHHHHHhhhHhcCc--HHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCC--cCcHHHHHHHHhcCCCCch
Q psy6178 379 FRLKVSELVKDVVFIVGS--STCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEE--NDVVPKVVEAILHLPPSTH 454 (912)
Q Consensus 379 ~R~~~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~--~~~l~~l~~~l~~~~~~~~ 454 (912)
|.+.+-|.+.++..-.+. +..++.+...++ + .+.-+-++..++-+|+..+... ..++..+.+-+. . .+
T Consensus 429 FK~~~Vdaisd~~~~~p~skEraLe~LC~fIE--D--cey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i--L--EN 500 (898)
T COG5240 429 FKKYMVDAISDAMENDPDSKERALEVLCTFIE--D--CEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLI--L--EN 500 (898)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHh--h--cchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH--H--hh
Confidence 445567777777665543 235666666664 2 2333567788888888765432 345666665332 1 35
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCC--ChHHHHHHHHHHHH
Q psy6178 455 IAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQP--GLASVTANALQSIS 507 (912)
Q Consensus 455 ~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~--~v~~~A~~al~~l~ 507 (912)
..||.+++.+++.|+--. ..+-.-..+-+.+-+++.+. +|+.+|+.+++.+-
T Consensus 501 ~ivRsaAv~aLskf~ln~-~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 501 NIVRSAAVQALSKFALNI-SDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hHHHHHHHHHHHHhccCc-cccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 789999999998877432 22444455666666778775 49999999998774
No 123
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=57.61 E-value=2.4e+02 Score=31.50 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=33.4
Q ss_pred HHHHHHhhHHHHHHHHHHccc----cCCCcchhhHHHHHHHHHHhChHHHHHHHH
Q psy6178 812 KDIVSKHGQALVSNLLQACVF----SLHTYMMADVADVLYELISVDRQVSNQWLQ 862 (912)
Q Consensus 812 ~~~~~~~g~~lv~~ll~~~~~----~~~~~~~~~~a~vL~~l~~~~~~~~~~wl~ 862 (912)
-.++..+...++..++.++-. +=.+........+|..+...+|..+.+-..
T Consensus 327 ~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~ 381 (409)
T PF01603_consen 327 LSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQ 381 (409)
T ss_dssp HHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 345556666666666666543 334556677788888888888888776443
No 124
>KOG1967|consensus
Probab=56.73 E-value=90 Score=37.53 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=64.8
Q ss_pred CcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCC--hHHHHHHHHHHHHHHhcC
Q psy6178 477 HTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSIS--NDAAIGLLKGVAIIVSDM 552 (912)
Q Consensus 477 ~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~--~~~~~~l~eai~~vi~~~ 552 (912)
..++.+++.++.+++-|+ ++..+-..|..+.......+..|+++++..+..+...... .-.|+..+++++.+...+
T Consensus 905 p~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~ 984 (1030)
T KOG1967|consen 905 PQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRL 984 (1030)
T ss_pred cchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccC
Confidence 457888999999888665 7788888899888888888888999999888776554222 336899999999999988
Q ss_pred CHHHHHHH
Q psy6178 553 PQDQISEA 560 (912)
Q Consensus 553 p~~~~~~~ 560 (912)
|.....++
T Consensus 985 P~~~l~~f 992 (1030)
T KOG1967|consen 985 PTKSLLSF 992 (1030)
T ss_pred CCcccccc
Confidence 86544333
No 125
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=56.36 E-value=4.3e+02 Score=31.81 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=50.0
Q ss_pred cCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHH--hhh
Q psy6178 436 NDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTL-ETILNFLLHCLQQPGLASVTANALQSISTA--CCT 512 (912)
Q Consensus 436 ~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l-~~~l~~l~~~l~~~~v~~~A~~al~~l~~~--~~~ 512 (912)
...++.+..++. ..+..++..++.++..++.--...+..+ ..+++.+..-+.++..+..|...|++++.+ ++.
T Consensus 330 ~giV~kL~kLl~----s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~ 405 (708)
T PF05804_consen 330 SGIVEKLLKLLP----SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARS 405 (708)
T ss_pred cCCHHHHHHHhc----CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHH
Confidence 356777766653 2467788888988887764222222111 123444555566777777888999999854 444
Q ss_pred hhh--hcHHHHHHHH
Q psy6178 513 HMV--GHFNGLLQII 525 (912)
Q Consensus 513 ~L~--~~~~~ll~~~ 525 (912)
.+. .-++.+++.+
T Consensus 406 ~f~~TdcIp~L~~~L 420 (708)
T PF05804_consen 406 MFAYTDCIPQLMQML 420 (708)
T ss_pred HHhhcchHHHHHHHH
Confidence 333 1244444443
No 126
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=55.56 E-value=64 Score=27.24 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=46.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCc---CcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhh
Q psy6178 452 STHIAVRYTSLLLLGELCEWIDKHP---HTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMV 515 (912)
Q Consensus 452 ~~~~~v~~t~~~~lg~y~~~l~~~p---~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~ 515 (912)
++.+.+|.-++..+.+.. ..+. ..++.++..++..+.|++ |--.|..+|..+|........
T Consensus 14 dp~~PvRa~gL~~L~~Li---~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl 79 (92)
T PF10363_consen 14 DPLPPVRAHGLVLLRKLI---ESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVL 79 (92)
T ss_pred CCCcchHHHHHHHHHHHH---HcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHH
Confidence 345668888887776544 3333 568899999999999987 888999999999888766443
No 127
>KOG2032|consensus
Probab=55.14 E-value=3.5e+02 Score=30.40 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=69.8
Q ss_pred CcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHH-HhhhcCCChHHHHHHHHHHHHHHhcCC
Q psy6178 477 HTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQ-CLDTLSISNDAAIGLLKGVAIIVSDMP 553 (912)
Q Consensus 477 ~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~-~l~~~~~~~~~~~~l~eai~~vi~~~p 553 (912)
..+..++..+.....+|. ++..|++.+.+....|.+....|.+.+++.+. .+.+. ...+.....+.++..+.....
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~-~~~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDD-LNEEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHhhh
Confidence 467778887778888886 88899999999998888888888887777654 44443 445678888899988887765
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhc
Q psy6178 554 QDQISEALKQLCLVQVKPLCELIEKQ 579 (912)
Q Consensus 554 ~~~~~~~l~~l~~p~~~~l~~~~~~~ 579 (912)
..+..++ .-++.-++.......
T Consensus 333 ~~~l~~~----~l~ialrlR~l~~se 354 (533)
T KOG2032|consen 333 NDDLESY----LLNIALRLRTLFDSE 354 (533)
T ss_pred hcchhhh----chhHHHHHHHHHHhc
Confidence 5444433 445555556655544
No 128
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=54.98 E-value=2.4e+02 Score=28.42 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=35.8
Q ss_pred hhhhhhcHHHHHHHHHHh-hhcCCChHHHHHHHHHHHHHHhcCCHHH
Q psy6178 511 CTHMVGHFNGLLQIIQCL-DTLSISNDAAIGLLKGVAIIVSDMPQDQ 556 (912)
Q Consensus 511 ~~~L~~~~~~ll~~~~~l-~~~~~~~~~~~~l~eai~~vi~~~p~~~ 556 (912)
+..+..|++.++-.|... ....++.+.+..+..|+-.++..++.++
T Consensus 146 k~~~~kh~~~lL~~Yi~~~~~~~l~~~vr~~L~pGiy~l~d~~s~~e 192 (223)
T PF10441_consen 146 KKSLRKHAPYLLANYISLQLKYTLPPEVREALMPGIYALFDVCSQHE 192 (223)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCHHH
Confidence 446777888888777653 3445788899999999999999988655
No 129
>KOG1993|consensus
Probab=54.98 E-value=4.4e+02 Score=31.55 Aligned_cols=155 Identities=14% Similarity=0.095 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHH-HhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhHHH
Q psy6178 495 LASVTANALQSIST-ACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDM--PQDQISEALKQLCLVQVKP 571 (912)
Q Consensus 495 v~~~A~~al~~l~~-~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~--p~~~~~~~l~~l~~p~~~~ 571 (912)
++++.+.-+..-.. .|+..+.|- +...+.++.+.+-+--.+.....++..++.-- ..+...+++ +.+...
T Consensus 503 iRRRVa~ilg~Wvsvq~~~e~k~l---~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~l----enlf~~ 575 (978)
T KOG1993|consen 503 IRRRVAWILGQWVSVQQKLELKPL---LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYL----ENLFVL 575 (978)
T ss_pred HHHHHHHHHhhhhheechHhHHHH---HHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhH----HHHHHH
Confidence 66666666665543 233333322 23333344332111113455555666655422 223344444 334444
Q ss_pred HHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHH
Q psy6178 572 LCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAI 651 (912)
Q Consensus 572 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~ 651 (912)
+-+++.... +-+. ....|..++.+...++.. +.|+..++...+-.+-+.+...+-++-++...+++.+
T Consensus 576 lfkll~~~~--e~Dt---k~~VL~~ls~lI~r~~e~-------I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV 643 (978)
T KOG1993|consen 576 LFKLLKAVE--ECDT---KTSVLNLLSTLIERVSEH-------IAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLV 643 (978)
T ss_pred HHHHHHHHh--hhhh---HHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Confidence 445555432 1111 244677788887776642 2245555555555555555566667788889999999
Q ss_pred HHhchh---hHHhHHHHHHH
Q psy6178 652 RCVGKD---FAHLLEPLVKQ 668 (912)
Q Consensus 652 ~~l~~~---~~p~l~~l~~~ 668 (912)
.++|.. +-||+-|+++.
T Consensus 644 ~alg~qS~~~~~fL~pVIel 663 (978)
T KOG1993|consen 644 NALGAQSFEFYPFLYPVIEL 663 (978)
T ss_pred HHhccCCccchHHHHHHHHH
Confidence 999864 56677776653
No 130
>KOG2956|consensus
Probab=54.69 E-value=3.5e+02 Score=30.23 Aligned_cols=84 Identities=11% Similarity=0.088 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHhhh-hhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHH
Q psy6178 495 LASVTANALQSISTACCT-HMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLC 573 (912)
Q Consensus 495 v~~~A~~al~~l~~~~~~-~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~ 573 (912)
....+.+-+.++|++... .|.+.++.|.-.+.+..+. .+...|..++.|+-.+...+.-+++.+++.++-..-+.=++
T Consensus 422 ~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S-~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Llq 500 (516)
T KOG2956|consen 422 RAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDS-TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQ 500 (516)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcC-chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHH
Confidence 455677788899988764 4545444444433322221 34557888999999999888777778888877665555444
Q ss_pred HHHHhc
Q psy6178 574 ELIEKQ 579 (912)
Q Consensus 574 ~~~~~~ 579 (912)
-.++..
T Consensus 501 lYinRa 506 (516)
T KOG2956|consen 501 LYINRA 506 (516)
T ss_pred HHHHHh
Confidence 444443
No 131
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=54.53 E-value=1.6e+02 Score=35.36 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=51.3
Q ss_pred CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHH-HHHHHHhc---CCCChHHHHHHHHHHHHHH
Q psy6178 435 ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETI-LNFLLHCL---QQPGLASVTANALQSISTA 509 (912)
Q Consensus 435 ~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~-l~~l~~~l---~~~~v~~~A~~al~~l~~~ 509 (912)
..+.+..++..+.+...++|+.||++|..+++.+-. ..+++++.. +.-+...+ .+|.|.+.|-.++..++.+
T Consensus 121 ~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~---ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 121 VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR---LDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh---cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 356677888888777777899999999998876543 345554444 33333333 2477999999999999887
No 132
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=48.75 E-value=2.2e+02 Score=26.32 Aligned_cols=85 Identities=12% Similarity=0.179 Sum_probs=51.4
Q ss_pred HHHHhcCcCcHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhhhhhhcH--HHHHHHHHHhhhcCCChHHHHHHHHH
Q psy6178 469 CEWIDKHPHTLETILNFLLHCLQQ--PGLASVTANALQSISTACCTHMVGHF--NGLLQIIQCLDTLSISNDAAIGLLKG 544 (912)
Q Consensus 469 ~~~l~~~p~~l~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~~~L~~~~--~~ll~~~~~l~~~~~~~~~~~~l~ea 544 (912)
|+-+...+.--..++..|-..+.+ |+++..|-..+..+.+.|+..+...+ ..|++.+..+.+...+.+.+.++.+-
T Consensus 25 cD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~l 104 (144)
T cd03568 25 CDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREV 104 (144)
T ss_pred HHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 333333444445566666666665 56889999999999999998665443 34666655544433444555555555
Q ss_pred HHHHHhcCC
Q psy6178 545 VAIIVSDMP 553 (912)
Q Consensus 545 i~~vi~~~p 553 (912)
+-.-..+.+
T Consensus 105 i~~W~~~f~ 113 (144)
T cd03568 105 VKQWADEFK 113 (144)
T ss_pred HHHHHHHhC
Confidence 544444433
No 133
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=48.03 E-value=3e+02 Score=27.63 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=78.2
Q ss_pred CCCCCchHHHHHHHHHHHHHhCCccccCc-hhhHHHHHHHHHhccc-------C----Cchh--HHHHHHHHHHHhhccC
Q psy6178 722 LKNHPDTVDDLFRLCTRFLQRAPIAFLTS-SFISSVMQCGILATHL-------D----HREA--NSTVMKFFYDLIHNNR 787 (912)
Q Consensus 722 ~~~~pd~~~~~f~l~~~~l~~~p~~~l~~-~~l~~i~~~~~~~l~~-------~----~~~~--~~~~~~fl~~li~~~~ 787 (912)
....+++=....+++..++++++..+... +.+..++...+.++.. . ..+. ++....+++.+.+...
T Consensus 48 ~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~~LL~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep~~ 127 (223)
T PF10441_consen 48 ADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQRLLRCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEPSS 127 (223)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHHHHHHHHHhcCccccccccccchhhHHHHHHHHHHHHHhCccc
Confidence 34556666677788888888888777543 4444554444444441 1 1122 4556666666665511
Q ss_pred CCCcccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccc-cCCCcchhhHHHHHHHHHHhChHHHHHHHHHH
Q psy6178 788 VLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVF-SLHTYMMADVADVLYELISVDRQVSNQWLQDT 864 (912)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~-~~~~~~~~~~a~vL~~l~~~~~~~~~~wl~~~ 864 (912)
-.. ..........-....+..+.++-+.++.+-+....+ .+++++.+.+..-++++...+++.-.+.+..+
T Consensus 128 ~~~------~~~~~~~l~~~~~~~k~~~~kh~~~lL~~Yi~~~~~~~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~ 199 (223)
T PF10441_consen 128 VSR------SSKKTSSLTSATSSAKKSLRKHAPYLLANYISLQLKYTLPPEVREALMPGIYALFDVCSQHELQQLNAS 199 (223)
T ss_pred ccc------cccccccccHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 000 000011111223346677778888888887776544 56777777777777777776665555555444
No 134
>KOG2021|consensus
Probab=46.11 E-value=5.9e+02 Score=30.39 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy6178 453 THIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTA 509 (912)
Q Consensus 453 ~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~ 509 (912)
.+|.+..++++++|+|-.|+.-+--.=...++.+...+...+++.+||.++..+...
T Consensus 205 ~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~ieelR~aac~cilaiVsK 261 (980)
T KOG2021|consen 205 VNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLNIEELRIAACNCILAIVSK 261 (980)
T ss_pred CCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999986542111344555555566677999999999888765
No 135
>KOG2025|consensus
Probab=45.58 E-value=86 Score=36.50 Aligned_cols=75 Identities=21% Similarity=0.233 Sum_probs=57.3
Q ss_pred CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCc-CcHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHH
Q psy6178 435 ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHP-HTLETILNFLLHCLQQ--PGLASVTANALQSISTA 509 (912)
Q Consensus 435 ~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p-~~l~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~ 509 (912)
+++.+..+|..+++........||..+|.+|.....-...-+ +....+...++..+-| |.|+..|..||.++-.+
T Consensus 79 e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d 156 (892)
T KOG2025|consen 79 EEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD 156 (892)
T ss_pred hhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC
Confidence 456888899988887766778999999999998887444334 3556666666667766 66999999999998743
No 136
>KOG0211|consensus
Probab=44.87 E-value=1.3e+02 Score=36.21 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=8.2
Q ss_pred ccchhHHHHHHHHhhccc
Q psy6178 414 WEQTEAALYIMQSVAKNV 431 (912)
Q Consensus 414 w~~~Ea~L~~l~~iae~~ 431 (912)
|..+-+.++++..+++-+
T Consensus 571 y~~R~t~l~si~~la~v~ 588 (759)
T KOG0211|consen 571 YLVRMTTLFSIHELAEVL 588 (759)
T ss_pred cchhhHHHHHHHHHHHHh
Confidence 444444444444444443
No 137
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=44.37 E-value=76 Score=30.63 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=40.9
Q ss_pred hHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHH---HhchhhHHhHHHHHHHHH
Q psy6178 615 CQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIR---CVGKDFAHLLEPLVKQIV 670 (912)
Q Consensus 615 ~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~---~l~~~~~p~l~~l~~~l~ 670 (912)
+.+++.++++-+...+.. .|++|..++..++..++. ..|+.+.||..+++..+.
T Consensus 74 ilPvlPqLI~plk~AL~t--r~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 74 ILPVLPQLIIPLKRALNT--RDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 566677776666666553 689999999999999944 468888898888877554
No 138
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=43.92 E-value=4.2e+02 Score=28.05 Aligned_cols=126 Identities=20% Similarity=0.222 Sum_probs=72.9
Q ss_pred HHHHHHHhhcccCCC--CcCcHHHHHHHHh--cCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcC--CC
Q psy6178 420 ALYIMQSVAKNVLPE--ENDVVPKVVEAIL--HLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQ--QP 493 (912)
Q Consensus 420 ~L~~l~~iae~~~~~--~~~~l~~l~~~l~--~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~--~~ 493 (912)
||+..+.+-+.+... .+..+..+++.|. .+. ..++.+|..++.++|-|+-.= .+.-..-+..+...+. ++
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~-~~~~~vR~~al~cLGl~~Lld---~~~a~~~l~l~~~~~~~~~~ 78 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQ-SSDPAVRELALKCLGLCCLLD---KELAKEHLPLFLQALQKDDE 78 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHhCCH
Confidence 344555555555422 2334556665432 222 357899999999999988643 2333333444444442 34
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhh---------cHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHh
Q psy6178 494 GLASVTANALQSISTACCTHMVG---------HFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVS 550 (912)
Q Consensus 494 ~v~~~A~~al~~l~~~~~~~L~~---------~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~ 550 (912)
.++..|..++-.+...-+..... ....+++.+...... ...+.+..+.||++.++-
T Consensus 79 ~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 79 EVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDS-ENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHh
Confidence 58888888888777554432221 123455555544332 255678888899988774
No 139
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=43.92 E-value=47 Score=26.60 Aligned_cols=52 Identities=23% Similarity=0.412 Sum_probs=35.3
Q ss_pred chhHHHHHHHHhhcccCC----CCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q psy6178 416 QTEAALYIMQSVAKNVLP----EENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCE 470 (912)
Q Consensus 416 ~~Ea~L~~l~~iae~~~~----~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~ 470 (912)
++-++|++++.++..-.. ++.+.++.++++..+. +..-+|.|++.++|-.+.
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s---~v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENS---PVLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhC---CccchHHHHHHHHHHHhC
Confidence 467999999999875211 1235556666654433 367899999999987663
No 140
>KOG2933|consensus
Probab=43.38 E-value=1.4e+02 Score=31.30 Aligned_cols=113 Identities=15% Similarity=0.243 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCc-
Q psy6178 398 TCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHP- 476 (912)
Q Consensus 398 ~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p- 476 (912)
..+.+.+..| .+.+|...=-+|..+..+++.=++..+..+..++-.+.+--......|-+++|-+++.....+..+-
T Consensus 88 ~al~~~l~~L--~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 88 AALKQALKKL--SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHh--chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 4667887777888888888875433344444433333222222456799999999988877776542
Q ss_pred CcHHHHHHHHHH-hcCCCC-hHHHHHHHHHHHHHHhhh
Q psy6178 477 HTLETILNFLLH-CLQQPG-LASVTANALQSISTACCT 512 (912)
Q Consensus 477 ~~l~~~l~~l~~-~l~~~~-v~~~A~~al~~l~~~~~~ 512 (912)
+-+...+-.|+. +-.+.+ ++..|-+||........+
T Consensus 166 ~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp 203 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP 203 (334)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh
Confidence 234444444442 222333 888888888888876554
No 141
>KOG2213|consensus
Probab=40.49 E-value=5.2e+02 Score=28.18 Aligned_cols=215 Identities=13% Similarity=0.179 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhh---hhcHHHHHHHHH--Hh
Q psy6178 456 AVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHM---VGHFNGLLQIIQ--CL 528 (912)
Q Consensus 456 ~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L---~~~~~~ll~~~~--~l 528 (912)
.-.+-+-++|++|-.+| |++-...++.=+....+.+ +++.|.+-|=.||++ ..+ .+.+.++++... .+
T Consensus 39 k~k~lasq~ip~~fk~f---p~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~~~rv~d~l~qLLnk~sl~~L 113 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHF---PSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DALSRVNDVLVQLLNKASLTGL 113 (460)
T ss_pred HHHHHHHHHHHHHHhhC---chhhhHHHHhhhccccccchhhHHHHHhccchhccC--chhhhhHHHHHHHHHHHHHHHH
Confidence 34455667888776665 7877777777666666544 888899999999987 322 233333333221 11
Q ss_pred h-hcCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCC
Q psy6178 529 D-TLSI-SNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSP 606 (912)
Q Consensus 529 ~-~~~~-~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 606 (912)
. .... +...|++++.-|..=+-.++++-...-++.. +++-+...+..- . .......++.|+++ +.++.
T Consensus 114 f~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~---iv~eikkal~dV----t--geef~lfm~~L~~l-k~~~~ 183 (460)
T KOG2213|consen 114 FGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERH---IVDEIKKALEDV----T--GEEFTLFMDILASL-KSLQT 183 (460)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHH---HHHHHHHHHHhc----c--HHHHHHHHHHHHhh-hcccC
Confidence 1 1112 2335677777666655566654333222222 122222222211 0 11233455666654 22221
Q ss_pred CcCCCCCChHHHHHhHhHHHHHHHHh--h-ccchhHHHHHHHHHHHHHHHhc--hhhHHhHHHHHHHHHHH-HhcCCCcc
Q psy6178 607 RIMSEPHPCQGVITELWPVLSKTCET--Y-QQDARVMEHSSRCLRYAIRCVG--KDFAHLLEPLVKQIVVL-YSKHPHSS 680 (912)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~l~~~l~~--~-~~~~~v~e~~~~~~~~~~~~l~--~~~~p~l~~l~~~l~~~-~~~~~~~~ 680 (912)
. .+ ..-++++.......-.. | ..|++.+++...|+.-++--+. .....|+.-+...++-. |...+.--
T Consensus 184 k-----~~-~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~r 257 (460)
T KOG2213|consen 184 K-----AG-EARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEER 257 (460)
T ss_pred C-----CC-HHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHH
Confidence 1 11 11233333333332222 2 3588899999999888765542 22333444444443322 22222223
Q ss_pred hHHhHHHHHHH
Q psy6178 681 FLYLGSILVDE 691 (912)
Q Consensus 681 ~L~~~~~lv~~ 691 (912)
-|+++..+.+.
T Consensus 258 kL~lLK~lAEM 268 (460)
T KOG2213|consen 258 KLDLLKALAEM 268 (460)
T ss_pred HHHHHHHHHHh
Confidence 45566655543
No 142
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=39.05 E-value=59 Score=38.75 Aligned_cols=60 Identities=18% Similarity=0.147 Sum_probs=48.3
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHH
Q psy6178 444 EAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSIST 508 (912)
Q Consensus 444 ~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~ 508 (912)
+.+.+-.++++|.+|..+++++|..- .+++++.+++.+.+.+.+++ |+..|+.|+.++=+
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~-----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLR-----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 34433345678999999999998643 47899999999999999876 99999999998753
No 143
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=38.43 E-value=1.1e+02 Score=27.10 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=46.5
Q ss_pred cchhhHHHHHHHHHHhCh--HHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHhhhhhhh----hHHHHHHHHHhh
Q psy6178 837 YMMADVADVLYELISVDR--QVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAY----DVGQALKELSRL 910 (912)
Q Consensus 837 ~~~~~~a~vL~~l~~~~~--~~~~~wl~~~l~~~p~~~~~~~~~~t~~~k~~f~~~l~~~~~~~----~~~~~~~~F~~~ 910 (912)
...+.....|.....+-| ....+-+.++.+.|-. .+|++||+.|.+.+-+-+.++ .....++.++.-
T Consensus 29 ~~~~~Y~~~l~~al~~~~~~~~~~Nvl~Hi~Gyfk~-------~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~~~~r 101 (117)
T PF08349_consen 29 EVFEEYEELLMEALSKPPTRGSHINVLQHIFGYFKK-------KLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKHLARR 101 (117)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 445666666776666554 3467777788887743 699999999999998777652 345666666543
No 144
>KOG4199|consensus
Probab=37.61 E-value=5.4e+02 Score=27.49 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=39.9
Q ss_pred CCchHHHHHHHHHHHHHhC--CccccCchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhhc
Q psy6178 725 HPDTVDDLFRLCTRFLQRA--PIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHN 785 (912)
Q Consensus 725 ~pd~~~~~f~l~~~~l~~~--p~~~l~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~ 785 (912)
+||...+...-+.++.-+. ...+..+.-+..++.|.-.+-....++.+|.+++.|+.+...
T Consensus 255 dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~ 317 (461)
T KOG4199|consen 255 DPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS 317 (461)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC
Confidence 4998888887777776443 233333444666777654433344567889999999888753
No 145
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=37.43 E-value=1.6e+02 Score=25.40 Aligned_cols=54 Identities=9% Similarity=0.119 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhhh-hhhcHHHHHHHHHHhhhc
Q psy6178 478 TLETILNFLLHCLQQ--PGLASVTANALQSISTACCTH-MVGHFNGLLQIIQCLDTL 531 (912)
Q Consensus 478 ~l~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~~~-L~~~~~~ll~~~~~l~~~ 531 (912)
+.+.++.|+..+|.+ |+++..|..-|.-+.+.|... +..+...+++.+..+..+
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 456778888888887 679999999998888888887 556677777777665544
No 146
>KOG1062|consensus
Probab=36.66 E-value=8.3e+02 Score=29.42 Aligned_cols=179 Identities=11% Similarity=0.108 Sum_probs=87.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHh
Q psy6178 451 PSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQ--QPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCL 528 (912)
Q Consensus 451 ~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~--~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l 528 (912)
.++++-+++.++++.-... +.+.+..+++-++..|. +++.....+.-+..+++...+.=.=|++.++..+...
T Consensus 360 ~DpD~SIkrralELs~~lv-----n~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~a 434 (866)
T KOG1062|consen 360 KDPDVSIKRRALELSYALV-----NESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTA 434 (866)
T ss_pred cCCcHHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc
Confidence 3457788888888765433 45566666666665554 3456666666666666554443223566666666554
Q ss_pred hhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCc
Q psy6178 529 DTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRI 608 (912)
Q Consensus 529 ~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~ 608 (912)
.+. + +..+...+-.+|+..+++.......++...+.......+++. . .. ....=+||....-+-.+.
T Consensus 435 G~~-V----~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e-----~-l~--qVa~W~IGEYGdlll~~~ 501 (866)
T KOG1062|consen 435 GDF-V----NDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQE-----P-LL--QVASWCIGEYGDLLLDGA 501 (866)
T ss_pred ccc-c----chhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhh-----h-HH--HHHHHHhhhhhHHhhcCc
Confidence 443 2 233555556666665443322222333222222111111111 0 11 112223444432221110
Q ss_pred CCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHH
Q psy6178 609 MSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLR 648 (912)
Q Consensus 609 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~ 648 (912)
+..+|....-..+...+..++..+..+..+...+..++.
T Consensus 502 -~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~ 540 (866)
T KOG1062|consen 502 -NEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALL 540 (866)
T ss_pred -cccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 123444444566667777777776666655554444433
No 147
>KOG2256|consensus
Probab=36.31 E-value=7.7e+02 Score=28.92 Aligned_cols=222 Identities=14% Similarity=0.094 Sum_probs=106.4
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHH--hcCCCChHHHHHHHHHHHHHHhhh-hhh
Q psy6178 439 VPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLH--CLQQPGLASVTANALQSISTACCT-HMV 515 (912)
Q Consensus 439 l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~--~l~~~~v~~~A~~al~~l~~~~~~-~L~ 515 (912)
+..++.++-++. ...+....+.-+.+.+.++..+|..+..++..++. +-++..++..|--.+..+|..... ++.
T Consensus 243 l~s~l~Ll~~~t---~te~~~~~L~~l~~l~~~~~~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~ 319 (661)
T KOG2256|consen 243 LGSSLHLLNQLT---DTEVLAFTLRHLTVLVPFLATFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLD 319 (661)
T ss_pred hHHHHHHHHHcc---hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHH
Confidence 334444443442 45666667777888888888888888887777763 223455888888888888877554 343
Q ss_pred hcHHHHHHHHHH---hhhcCCChHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCC--CCCC
Q psy6178 516 GHFNGLLQIIQC---LDTLSISNDAAIG-LLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKN--KKSD 589 (912)
Q Consensus 516 ~~~~~ll~~~~~---l~~~~~~~~~~~~-l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~--~~~~ 589 (912)
+-+-+.+-.+.. ..+ ........ +-.++.-+.+ +.....+..--.++..+.--|+..+...+..+-. +.-+
T Consensus 320 ~vlk~mY~afv~nsk~~~--~~tl~~i~Fl~~slvEL~~-ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWq 396 (661)
T KOG2256|consen 320 PVLKTMYLAFVRNSKFVT--VNTLPLINFLQNSLVELLG-LDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQ 396 (661)
T ss_pred HHHHHHHHHHHHhCCCCC--CcccchhHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 433333222221 111 11111221 1122222222 2223232222233344443444444432100000 0112
Q ss_pred hHHHHHHHHHHhh-hcCCCcCCCCCChHHHHHhHhHHHHHHHHh--hccchhHHHHHHHHHHHHHHHhchhhHHhHHHHH
Q psy6178 590 PVIWLDRLAAIFK-HTSPRIMSEPHPCQGVITELWPVLSKTCET--YQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLV 666 (912)
Q Consensus 590 ~~~~l~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~ 666 (912)
.+++++.-..+.. ..+.. .++.++.--+..++.-+... -+..-.++=++++.+.+..++.|. +.|..|-++
T Consensus 397 fi~cL~lW~rvisf~~~~~-----s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~-fIPi~~ll~ 470 (661)
T KOG2256|consen 397 YVHCLDLWLRVISFANGSA-----SQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGT-FIPLSPLLV 470 (661)
T ss_pred HHHHHHHHHHHHHHhhccH-----hhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCc-eeecHHHHH
Confidence 2344544444333 22211 11222222222222222222 234567888899999888887775 567776666
Q ss_pred HHHHHH
Q psy6178 667 KQIVVL 672 (912)
Q Consensus 667 ~~l~~~ 672 (912)
+.+-..
T Consensus 471 Eml~~~ 476 (661)
T KOG2256|consen 471 EMLKSV 476 (661)
T ss_pred HHHHHh
Confidence 665443
No 148
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=35.98 E-value=3.8e+02 Score=25.29 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHccccCCCcchhhHHHHHHHHHHhChHHHH---HHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHhhh
Q psy6178 818 HGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSN---QWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRS 894 (912)
Q Consensus 818 ~g~~lv~~ll~~~~~~~~~~~~~~~a~vL~~l~~~~~~~~~---~wl~~~l~~~p~~~~~~~~~~t~~~k~~f~~~l~~~ 894 (912)
.+..+++.++..+....+.. ...+.++|..+.+++|-... .-+.+.+..++ .++.+....+++++...
T Consensus 52 ~r~~Ile~l~~rI~~~s~~~-~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~--------~lp~~~a~~ll~Al~PL 122 (158)
T PF14676_consen 52 IRSEILEQLLNRIVTKSSSP-SSQYIDLLSELVRKAPLTVLECSSKLKELLDYLS--------FLPGDVAIGLLRALLPL 122 (158)
T ss_dssp GHHHHHHHHHHHHHH--SS---HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTT--------TS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHH
Confidence 35667777777777655543 35678999999999997653 34455666775 47899999999999866
Q ss_pred hhh-hhHHHHH
Q psy6178 895 ESA-YDVGQAL 904 (912)
Q Consensus 895 ~~~-~~~~~~~ 904 (912)
-.. +++|+.+
T Consensus 123 i~~s~~lrd~l 133 (158)
T PF14676_consen 123 IKFSPSLRDSL 133 (158)
T ss_dssp HTT-HHHHHHH
T ss_pred HhcCHHHHHHH
Confidence 533 4555544
No 149
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=35.42 E-value=5.1e+02 Score=28.14 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHH-hhhcCCChHHHHHHHHHHHH
Q psy6178 495 LASVTANALQSISTACCTHMVGHFNGLLQIIQC-LDTLSISNDAAIGLLKGVAI 547 (912)
Q Consensus 495 v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~-l~~~~~~~~~~~~l~eai~~ 547 (912)
++..||..+..+|+.+...-....+.+...+.+ +.+..-+.......+.|++.
T Consensus 284 LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~ 337 (343)
T cd08050 284 LRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSA 337 (343)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH
Confidence 899999999999999887644444556655543 33332222234444444443
No 150
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=35.10 E-value=73 Score=21.80 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=16.3
Q ss_pred HHHHHHhcCCC--ChHHHHHHHHHHHH
Q psy6178 483 LNFLLHCLQQP--GLASVTANALQSIS 507 (912)
Q Consensus 483 l~~l~~~l~~~--~v~~~A~~al~~l~ 507 (912)
++.|+.-+.++ +++..|+.||.++|
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 44444445543 48888888888876
No 151
>KOG2032|consensus
Probab=34.47 E-value=7.2e+02 Score=28.07 Aligned_cols=92 Identities=10% Similarity=0.069 Sum_probs=64.5
Q ss_pred cCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcC--cCcHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHh
Q psy6178 436 NDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKH--PHTLETILNFLLHCLQQP---GLASVTANALQSISTAC 510 (912)
Q Consensus 436 ~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~--p~~l~~~l~~l~~~l~~~---~v~~~A~~al~~l~~~~ 510 (912)
...+..++..+.+-..+++-.+|..+|..+|..+... .+ -.+-+.++..++.||-|+ +|.-.|-.+|..+.+..
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~-P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGA-PDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccC-cHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 3566777766655444567799999999999988762 11 257788888888888775 38888888888777665
Q ss_pred hh-hhhhcHHHHHHHHHHh
Q psy6178 511 CT-HMVGHFNGLLQIIQCL 528 (912)
Q Consensus 511 ~~-~L~~~~~~ll~~~~~l 528 (912)
.. .+.+|+-.+...+.++
T Consensus 332 ~~~~l~~~~l~ialrlR~l 350 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTL 350 (533)
T ss_pred hhcchhhhchhHHHHHHHH
Confidence 43 5777765555555544
No 152
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=34.26 E-value=8.3e+02 Score=28.68 Aligned_cols=161 Identities=19% Similarity=0.221 Sum_probs=78.9
Q ss_pred HHhHhHHHHHhhhHhcCcHHHHHHHHHHhhcCCCCcc-----chhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCC-C
Q psy6178 379 FRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWE-----QTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPP-S 452 (912)
Q Consensus 379 ~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~w~-----~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~-~ 452 (912)
++..+.+.+... .-|...-+..+...+..+...|. .+..-|-++......+. .. -..++..+++++- .
T Consensus 12 ~~~~V~~AL~~~--~~Gd~~~Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~Ld---~~-~~~LV~ail~~~W~~ 85 (563)
T PF05327_consen 12 YKSFVRSALESH--EKGDSSQYDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSLLD---SS-CKQLVEAILSLNWLG 85 (563)
T ss_dssp HHHHHHHHHHHH--HTT--HHHHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGGG----SC-CHHHHHHHHT-TGGG
T ss_pred HHHHHHHHHHHH--hcCCHHHHHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHHhh---hH-HHHHHHHHHcCCCCC
Confidence 555566565553 22433445666666632222332 23333333443333333 23 6677777777654 3
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC----------------hHHHHHHHHHHHHHHhhhhhhh
Q psy6178 453 THIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG----------------LASVTANALQSISTACCTHMVG 516 (912)
Q Consensus 453 ~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~----------------v~~~A~~al~~l~~~~~~~L~~ 516 (912)
-++.++.+...+++.. ...|+.|+..++..+++.+..|. +..+.-.+|.+|++- +|
T Consensus 86 ~~~~~v~~y~~Fl~~L---vsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~l-----vP 157 (563)
T PF05327_consen 86 RDEDFVEAYIQFLINL---VSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILRL-----VP 157 (563)
T ss_dssp S-HHHHHHHHHHHHHH---HHH-GGGHHHHHHHHHHGGGS-HHHHHH---------------HHHHHHHHHHH------G
T ss_pred CCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHHH-----cC
Confidence 4567777777766654 34579999999999998876532 223455566666543 33
Q ss_pred cHHH-HHHHHHH-hhhcCCChHHHHHHHHHHHHHHhcCC
Q psy6178 517 HFNG-LLQIIQC-LDTLSISNDAAIGLLKGVAIIVSDMP 553 (912)
Q Consensus 517 ~~~~-ll~~~~~-l~~~~~~~~~~~~l~eai~~vi~~~p 553 (912)
-.+. |...+.. +....-+......-++.+-.+..-.|
T Consensus 158 ~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P 196 (563)
T PF05327_consen 158 TSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCP 196 (563)
T ss_dssp GGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-G
T ss_pred CCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchH
Confidence 3222 2222221 11112234455666677777776665
No 153
>KOG0414|consensus
Probab=33.39 E-value=1.1e+02 Score=37.97 Aligned_cols=117 Identities=14% Similarity=0.199 Sum_probs=70.0
Q ss_pred hHHHHHhhhH---hcCcHHHHHHHHHHhhc--------CCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCC
Q psy6178 383 VSELVKDVVF---IVGSSTCFRHMFNSLHE--------NNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPP 451 (912)
Q Consensus 383 ~~d~l~~~~~---~l~~~~~l~~l~~~l~~--------~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~ 451 (912)
+.|.+..++. +.|++.++..+.+.+.. +++..+ -||..+++-+----..-.++.++-+|.++-..|
T Consensus 897 ~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq--~AAtLaL~klM~iSa~fces~l~llftimeksp- 973 (1251)
T KOG0414|consen 897 LADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQ--AAATLALGKLMCISAEFCESHLPLLFTIMEKSP- 973 (1251)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-
Confidence 3445555542 34645565555554443 122232 355555553321100113567888888876665
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHH
Q psy6178 452 STHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSIS 507 (912)
Q Consensus 452 ~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~ 507 (912)
.|.+|.-++-.+|.+ .-+.|.++.+--+++.+.++|++ |+..|...+.+|.
T Consensus 974 --~p~IRsN~VvalgDl---av~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLI 1026 (1251)
T KOG0414|consen 974 --SPRIRSNLVVALGDL---AVRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLI 1026 (1251)
T ss_pred --Cceeeecchheccch---hhhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 688887665555544 44569999999999999999975 7767766666554
No 154
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.32 E-value=1.1e+02 Score=36.14 Aligned_cols=136 Identities=11% Similarity=0.094 Sum_probs=0.0
Q ss_pred HhHHHHHhhhHhc--CcHHHHHHHHHHhhc--CCCCccchhHHHHHHHHhhcccCCCC--------cCcHHHHHHHHhcC
Q psy6178 382 KVSELVKDVVFIV--GSSTCFRHMFNSLHE--NNVMWEQTEAALYIMQSVAKNVLPEE--------NDVVPKVVEAILHL 449 (912)
Q Consensus 382 ~~~d~l~~~~~~l--~~~~~l~~l~~~l~~--~~~~w~~~Ea~L~~l~~iae~~~~~~--------~~~l~~l~~~l~~~ 449 (912)
++.+++..+...+ +..+.+..+++.+.. ...+..-.++|+.+++++......+. ..+++.+...+...
T Consensus 375 ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~ 454 (574)
T smart00638 375 EAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQA 454 (574)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHhhhhhhhcHHHHH
Q psy6178 450 PPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG-LASVTANALQSISTACCTHMVGHFNGLL 522 (912)
Q Consensus 450 ~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~-v~~~A~~al~~l~~~~~~~L~~~~~~ll 522 (912)
....+..-+..++..||... ||.-+..+.+++...-..+. ++..|..||+++...|.....+.+-.++
T Consensus 455 ~~~~~~~~~~~~LkaLGN~g-----~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~ 523 (574)
T smart00638 455 VSKGDEEEIQLYLKALGNAG-----HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIY 523 (574)
T ss_pred HhcCCchheeeHHHhhhccC-----ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
No 155
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=33.08 E-value=4.2e+02 Score=27.79 Aligned_cols=147 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhhhh------hhcHHHHHHHHHHhhh-------cCCChHHHHHH
Q psy6178 477 HTLETILNFLLHCLQQ--PGLASVTANALQSISTACCTHM------VGHFNGLLQIIQCLDT-------LSISNDAAIGL 541 (912)
Q Consensus 477 ~~l~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~~~L------~~~~~~ll~~~~~l~~-------~~~~~~~~~~l 541 (912)
++++-+++.++.-+.| ++++..++..+..|.+.+.... .+..+-+.+++.+... ..-+..-...+
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHh
Q psy6178 542 LKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITE 621 (912)
Q Consensus 542 ~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~ 621 (912)
+.++-.++.....+........+..-+.+.+-+.+.-. ....+.......++.+..+++.++. -++..+++
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~--~~~~~~~l~~~ll~~l~~~i~~lGi-------~~~~hL~r 265 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHE--SSFSYPRLRTVLLQQLPPIIDELGI-------SSVKHLQR 265 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceec--cccCchhHHHHHHHHHHHHHHHhcc-------HHHHHHHH
Q ss_pred HhHHHHHHHHh
Q psy6178 622 LWPVLSKTCET 632 (912)
Q Consensus 622 ~~~~l~~~l~~ 632 (912)
+.|++.++++.
T Consensus 266 ii~~l~~~l~n 276 (282)
T PF10521_consen 266 IIPVLSQILEN 276 (282)
T ss_pred HHHHHHHHhcC
No 156
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=33.00 E-value=4.4e+02 Score=25.16 Aligned_cols=89 Identities=12% Similarity=0.145 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhh-----ccCcchHHHHHHHHhcccchHHHHHHHHhhhhhhcccccC
Q psy6178 86 SLRDSLIEHLCRTNDTSGKNIITQLALALADLALQ-----MSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKL 160 (912)
Q Consensus 86 ~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~-----~~~W~~~~~~l~~~~~~~~~~~~~L~iL~~l~ee~~~~~~ 160 (912)
.||.-|+..|.... .+...-+.||..++-++.. ...|+++-+-+.+...+. ..-++.++..||--+.
T Consensus 3 eikplLIsCL~~q~--~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~e--~~kA~~IF~~L~~~l~---- 74 (174)
T PF04510_consen 3 EIKPLLISCLTMQE--TKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSENE--PVKAFHIFICLPMPLY---- 74 (174)
T ss_pred chHHHHHHHHHhhc--ccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhccc--hHHHHHHHHhCCchhh----
Confidence 47888888887632 2224555556555555443 237999887776655432 3456667777772211
Q ss_pred ChhhHHHHHHHHHhhhhHHHHHHHHhhhcC
Q psy6178 161 GKNRREEFEEELKAAGPIVIEFLKTCQANC 190 (912)
Q Consensus 161 ~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~ 190 (912)
.+.+...+..++.-+.+.+.++
T Consensus 75 --------~efl~~~~~~L~~~~~~~L~~p 96 (174)
T PF04510_consen 75 --------GEFLIPFMENLLPEISKVLLPP 96 (174)
T ss_pred --------hhHHHHHHHHHHHHHHHHcCCc
Confidence 1234455566666667777665
No 157
>TIGR02242 tail_TIGR02242 phage tail protein domain. This model describes a region of sequence similarity shared by a number of uncharacterized proteins in bacterial genomes, including Geobacter sulfurreducens PCA, Mesorhizobium loti, Streptomyces coelicolor A3(2), Gloeobacter violaceus PCC 7421, and Myxococcus xanthus. In all cases, the genomic region resembles a phage tail region, based on tentative identifications of neighboring genes. A region of this domain resembles a region of TIGR01634, another phage tail protein model.
Probab=32.40 E-value=2e+02 Score=26.07 Aligned_cols=54 Identities=15% Similarity=0.088 Sum_probs=40.7
Q ss_pred HhChHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q psy6178 851 SVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRL 910 (912)
Q Consensus 851 ~~~~~~~~~wl~~~l~~~p~~~~~~~~~~t~~~k~~f~~~l~~~~~~~~~~~~~~~F~~~ 910 (912)
..+|..+..||..-++.--.. ..+++.|..+++.....+..|..+..++.+...
T Consensus 45 ~~~P~~~Lp~LA~w~g~~~d~------~w~~~~kR~~I~~a~~l~r~rGT~~gLr~~l~~ 98 (130)
T TIGR02242 45 ETAPAPFLDFLAQWLGNPFDD------ELDVPQLRRLVARAADIYRQRGTRLGLRELLRL 98 (130)
T ss_pred hhCCHHHHHHHHHHhCCCCCC------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367889999999877732222 689999999999999887776666666666553
No 158
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=32.15 E-value=4.1e+02 Score=24.52 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=45.8
Q ss_pred CcCcHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhhhhhhcH--HHHHHHHHHhhhcCCChHHHHHHHHHHHHHHh
Q psy6178 475 HPHTLETILNFLLHCLQQ--PGLASVTANALQSISTACCTHMVGHF--NGLLQIIQCLDTLSISNDAAIGLLKGVAIIVS 550 (912)
Q Consensus 475 ~p~~l~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~~~L~~~~--~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~ 550 (912)
.+..-..++..+-..|.+ |.++..|-..+..+.+.|...+...+ ..|++.+..+.+...+...+.++++-+-.-..
T Consensus 35 ~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 35 KDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 344444556666666654 56899999999999999987655433 34555555444323444455555554444433
Q ss_pred c
Q psy6178 551 D 551 (912)
Q Consensus 551 ~ 551 (912)
+
T Consensus 115 ~ 115 (142)
T cd03569 115 A 115 (142)
T ss_pred H
Confidence 3
No 159
>KOG2137|consensus
Probab=32.14 E-value=9.3e+02 Score=28.63 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCCh-HHHHHHHHHHhhhcCCCcCCCCCC
Q psy6178 536 DAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDP-VIWLDRLAAIFKHTSPRIMSEPHP 614 (912)
Q Consensus 536 ~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~l~~~~~~~~~~ 614 (912)
+...-+++-+-.+...+|+++..+-+-.+ +. ...+. .+ ..+ -..|..+.++.+.++.
T Consensus 365 ~~~l~i~e~mdlL~~Kt~~e~~~~~Ilpl---L~----~S~~~---~~----~~iQ~~~L~~lptv~e~iD~-------- 422 (700)
T KOG2137|consen 365 QALLFILENMDLLKEKTPPEEVKEKILPL---LY----RSLED---SD----VQIQELALQILPTVAESIDV-------- 422 (700)
T ss_pred cchhhHHhhHHHHHhhCChHHHHHHHHHH---HH----HHhcC---cc----hhhHHHHHHhhhHHHHhccH--------
Confidence 34567788888888888887654333222 11 11111 01 111 1256677777776652
Q ss_pred hHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhch
Q psy6178 615 CQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGK 656 (912)
Q Consensus 615 ~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~ 656 (912)
..+-+.++|-+..+ .....+..+.-.+-.|+..++..+..
T Consensus 423 -~~vk~~ilP~l~~l-~~~tt~~~vkvn~L~c~~~l~q~lD~ 462 (700)
T KOG2137|consen 423 -PFVKQAILPRLKNL-AFKTTNLYVKVNVLPCLAGLIQRLDK 462 (700)
T ss_pred -HHHHHHHHHHhhcc-hhcccchHHHHHHHHHHHHHHHHHHH
Confidence 23456667777776 33345666777777777777765543
No 160
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=31.72 E-value=2.7e+02 Score=23.49 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHhc-CcCcHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHhh-hhhhhcH
Q psy6178 452 STHIAVRYTSLLLLGELCEWIDK-HPHTLETILNFLLHCLQQPG----LASVTANALQSISTACC-THMVGHF 518 (912)
Q Consensus 452 ~~~~~v~~t~~~~lg~y~~~l~~-~p~~l~~~l~~l~~~l~~~~----v~~~A~~al~~l~~~~~-~~L~~~~ 518 (912)
+.|-.+|.-+..+++..+.-+.. +|.+-+.++..+.+.+.||. ..--|...|..|-.+.- ..+.|++
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~vr~~ilP~l 89 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEAVRALILPNL 89 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 46889999999999999887664 47788899999999999875 44557777777754433 3455554
No 161
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=31.65 E-value=73 Score=24.79 Aligned_cols=38 Identities=13% Similarity=0.297 Sum_probs=27.2
Q ss_pred CCCccHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcC
Q psy6178 2 ESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKS 39 (912)
Q Consensus 2 ~~~~~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s 39 (912)
+++.+++++.+.+..-|+-+....++...++|.++++.
T Consensus 27 ~g~~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~~ 64 (68)
T PF05402_consen 27 DGPRTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLREK 64 (68)
T ss_dssp -SSS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 45788999999999989654445688888898888763
No 162
>KOG1061|consensus
Probab=31.33 E-value=9.8e+02 Score=28.64 Aligned_cols=122 Identities=16% Similarity=0.043 Sum_probs=68.4
Q ss_pred ChhhHHHHHHHHHHhhc-ChhH-HHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcc-cHHHHHHHHHHHHHHh
Q psy6178 22 NKTEKEKASQWLHQLQK-SIYA-WKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSE-SHVSLRDSLIEHLCRT 98 (912)
Q Consensus 22 ~~~~~~~A~~~L~~~q~-s~~a-w~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~-~~~~lk~~Ll~~l~~~ 98 (912)
|-+.++-..-||..+-+ .|+- -.....++....+.++.+|..|..++- .+..+ -...+-+-|...+..
T Consensus 62 dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~--------~l~v~~i~ey~~~Pl~~~l~d- 132 (734)
T KOG1061|consen 62 DLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMG--------CLRVDKITEYLCDPLLKCLKD- 132 (734)
T ss_pred CchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhcee--------eEeehHHHHHHHHHHHHhccC-
Confidence 55677778888876555 3442 333345555544445777777765543 11111 223444444444443
Q ss_pred ccCCChhHHHHHHHHHHHHHhhcc---CcchHHHHHHHHhccc--chHHHHHHHHhhhhhhc
Q psy6178 99 NDTSGKNIITQLALALADLALQMS---AWEKPVVYIIEKLSHK--GSILALLEVLTVLPEEV 155 (912)
Q Consensus 99 ~~~~~~~v~~kl~~~la~l~~~~~---~W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~ee~ 155 (912)
+.| ++|+..+..++.+....+ .=..+++.+-..+..+ ..+...+..|..+.|.-
T Consensus 133 --~~~-yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 133 --DDP-YVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred --CCh-hHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 555 899988888777776544 2235666666666533 23445566666666653
No 163
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=31.07 E-value=6.4e+02 Score=27.34 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=56.6
Q ss_pred CccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHh---------cCC-CCchHHHHHHHHHHHHHHHHHHhc-CcCcHHH
Q psy6178 413 MWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAIL---------HLP-PSTHIAVRYTSLLLLGELCEWIDK-HPHTLET 481 (912)
Q Consensus 413 ~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~---------~~~-~~~~~~v~~t~~~~lg~y~~~l~~-~p~~l~~ 481 (912)
++..+...+..+.++...-.-.-+.++.++++.++ ..+ .+.|-.+|.-+..+++..++-+.. .|.+.+.
T Consensus 230 nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~r 309 (343)
T cd08050 230 NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPR 309 (343)
T ss_pred cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 56656666666666666533334566666666432 222 246789999999999999987664 4677888
Q ss_pred HHHHHHHhcCCCC
Q psy6178 482 ILNFLLHCLQQPG 494 (912)
Q Consensus 482 ~l~~l~~~l~~~~ 494 (912)
++..+.+.+.+|.
T Consensus 310 i~~tl~k~l~d~~ 322 (343)
T cd08050 310 ITRTLLKALLDPK 322 (343)
T ss_pred HHHHHHHHHcCCC
Confidence 9989998888865
No 164
>KOG0567|consensus
Probab=30.85 E-value=2.6e+02 Score=28.74 Aligned_cols=86 Identities=15% Similarity=0.375 Sum_probs=50.6
Q ss_pred hhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCChH
Q psy6178 417 TEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLA 496 (912)
Q Consensus 417 ~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~v~ 496 (912)
.+.++|.++.++.. +.+..+...+ .++....|-.+-.++|+.- +|.-++.+...+...-.+|=|+
T Consensus 173 Ry~amF~LRn~g~E------eaI~al~~~l----~~~SalfrhEvAfVfGQl~-----s~~ai~~L~k~L~d~~E~pMVR 237 (289)
T KOG0567|consen 173 RYRAMFYLRNIGTE------EAINALIDGL----ADDSALFRHEVAFVFGQLQ-----SPAAIPSLIKVLLDETEHPMVR 237 (289)
T ss_pred HHhhhhHhhccCcH------HHHHHHHHhc----ccchHHHHHHHHHHHhhcc-----chhhhHHHHHHHHhhhcchHHH
Confidence 45677777655432 2233333322 2235677777778888754 4555555555555544456688
Q ss_pred HHHHHHHHHHHH-Hhhhhhhhc
Q psy6178 497 SVTANALQSIST-ACCTHMVGH 517 (912)
Q Consensus 497 ~~A~~al~~l~~-~~~~~L~~~ 517 (912)
..|+.||..+.. +|...|..|
T Consensus 238 hEaAeALGaIa~e~~~~vL~e~ 259 (289)
T KOG0567|consen 238 HEAAEALGAIADEDCVEVLKEY 259 (289)
T ss_pred HHHHHHHHhhcCHHHHHHHHHH
Confidence 888888888874 455555444
No 165
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.59 E-value=1.8e+02 Score=36.37 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=7.7
Q ss_pred chHHHHHHHHHHHHH
Q psy6178 453 THIAVRYTSLLLLGE 467 (912)
Q Consensus 453 ~~~~v~~t~~~~lg~ 467 (912)
+++.||..+.+.||+
T Consensus 850 ~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 850 PHLDVRKAAVLALTR 864 (897)
T ss_pred CCHHHHHHHHHHHhc
Confidence 345555555555554
No 166
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=30.27 E-value=4.3e+02 Score=24.19 Aligned_cols=86 Identities=14% Similarity=0.237 Sum_probs=53.6
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhhhhhhcH--HHHHHHHHHhhhcCCChH---HHH
Q psy6178 467 ELCEWIDKHPHTLETILNFLLHCLQQ--PGLASVTANALQSISTACCTHMVGHF--NGLLQIIQCLDTLSISND---AAI 539 (912)
Q Consensus 467 ~y~~~l~~~p~~l~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~~~L~~~~--~~ll~~~~~l~~~~~~~~---~~~ 539 (912)
..|+.+...+..-..++..|-..|.+ |+++..|-..+..+.+.|...+...+ ..|++.+..+........ .+.
T Consensus 28 ~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~ 107 (140)
T PF00790_consen 28 EICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKE 107 (140)
T ss_dssp HHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHH
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHH
Confidence 44555555566667777777777776 45899999999999999987765543 446666555332212222 455
Q ss_pred HHHHHHHHHHhcC
Q psy6178 540 GLLKGVAIIVSDM 552 (912)
Q Consensus 540 ~l~eai~~vi~~~ 552 (912)
.+++-+..-....
T Consensus 108 k~l~ll~~W~~~f 120 (140)
T PF00790_consen 108 KILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 5655554444443
No 167
>KOG0567|consensus
Probab=30.04 E-value=4.5e+02 Score=27.08 Aligned_cols=94 Identities=17% Similarity=0.341 Sum_probs=57.1
Q ss_pred cCcHHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 394 VGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 394 l~~~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
.|.++-+..+.+.+... +..-+.|++ |++|.+... ..++.+...|..-. .||.||--+...+|..+.
T Consensus 183 ~g~EeaI~al~~~l~~~-SalfrhEvA-fVfGQl~s~------~ai~~L~k~L~d~~--E~pMVRhEaAeALGaIa~--- 249 (289)
T KOG0567|consen 183 IGTEEAINALIDGLADD-SALFRHEVA-FVFGQLQSP------AAIPSLIKVLLDET--EHPMVRHEAAEALGAIAD--- 249 (289)
T ss_pred cCcHHHHHHHHHhcccc-hHHHHHHHH-HHHhhccch------hhhHHHHHHHHhhh--cchHHHHHHHHHHHhhcC---
Confidence 35554444455444322 222334554 566655443 34777777765543 689999999999997653
Q ss_pred cCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHH
Q psy6178 474 KHPHTLETILNFLLHCLQQPG--LASVTANALQSI 506 (912)
Q Consensus 474 ~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l 506 (912)
+.+++.|-..++++. |+..+..||...
T Consensus 250 ------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 250 ------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred ------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 346666777788875 666666666543
No 168
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=29.77 E-value=4.2e+02 Score=30.58 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=78.7
Q ss_pred CCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHh--cCCC-----CchHHHHHHHHHHHHHHHHHHhcCcCcHHHH
Q psy6178 410 NNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAIL--HLPP-----STHIAVRYTSLLLLGELCEWIDKHPHTLETI 482 (912)
Q Consensus 410 ~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~--~~~~-----~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~ 482 (912)
++.+....+.|--.+..+.-. -++.+.+.+++.+.. ..+. ..++.+|...+.++.+-..-... .+.+
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~--~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~----~~~~ 320 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVS--LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATS----FPNI 320 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhC----CccH
Confidence 344455455555555544443 234567778887765 3211 24678888888888773332222 3445
Q ss_pred HHHHHHhcCCC----ChHHHHHHHH---HHHHHHhhhhhhh-cHHHHHHHHHHhhh-------cCCChHHHHHHHHHHHH
Q psy6178 483 LNFLLHCLQQP----GLASVTANAL---QSISTACCTHMVG-HFNGLLQIIQCLDT-------LSISNDAAIGLLKGVAI 547 (912)
Q Consensus 483 l~~l~~~l~~~----~v~~~A~~al---~~l~~~~~~~L~~-~~~~ll~~~~~l~~-------~~~~~~~~~~l~eai~~ 547 (912)
+..++.++..+ +++..+-.-+ ...+..+...+.. .-+.+.....+..+ .....+.|...||++|.
T Consensus 321 ~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~ 400 (501)
T PF13001_consen 321 LQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGL 400 (501)
T ss_pred HHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHH
Confidence 55666666554 3555555555 5556666554333 22334433333221 12345578999999999
Q ss_pred HHhcCCH
Q psy6178 548 IVSDMPQ 554 (912)
Q Consensus 548 vi~~~p~ 554 (912)
++...|.
T Consensus 401 L~~~~p~ 407 (501)
T PF13001_consen 401 LAKRAPS 407 (501)
T ss_pred HHccCcc
Confidence 9999885
No 169
>KOG0211|consensus
Probab=29.17 E-value=1.1e+03 Score=28.64 Aligned_cols=175 Identities=15% Similarity=0.144 Sum_probs=97.2
Q ss_pred cchHHHHHhHhHHHHHh---hhHhcCcHHHHHHHHHHhhc--CCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHh
Q psy6178 373 DHDFYDFRLKVSELVKD---VVFIVGSSTCFRHMFNSLHE--NNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAIL 447 (912)
Q Consensus 373 ~~~f~~~R~~~~d~l~~---~~~~l~~~~~l~~l~~~l~~--~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~ 447 (912)
.+++...|.++.+.+.. +..+.|....-+.+.+.+.. ++..|+...|.+-.+-.++.... .+++..-+..++
T Consensus 447 ~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~ 523 (759)
T KOG0211|consen 447 KDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELL 523 (759)
T ss_pred chhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHH
Confidence 46667777776654432 23344544333444555543 45579999888887777776543 122222232222
Q ss_pred cC-CCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHH
Q psy6178 448 HL-PPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQI 524 (912)
Q Consensus 448 ~~-~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~ 524 (912)
.. ..+..-.+|.++...+-..+..+. -.-....+++.++....++. ++.....++..|.+-++..+.- ..|+..
T Consensus 524 ~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~--~~Llp~ 600 (759)
T KOG0211|consen 524 RTWLPDHVYSIREAAARNLPALVETFG-SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITC--EDLLPV 600 (759)
T ss_pred HhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHH--HHHhHH
Confidence 21 112234678888877777777776 22234455555666566654 7778888888888877765431 122222
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHHhcCCH
Q psy6178 525 IQCLDTLSISNDAAIGLLKGVAIIVSDMPQ 554 (912)
Q Consensus 525 ~~~l~~~~~~~~~~~~l~eai~~vi~~~p~ 554 (912)
+..+... ...+.|.++...+-.+...+..
T Consensus 601 ~~~l~~D-~vanVR~nvak~L~~i~~~L~~ 629 (759)
T KOG0211|consen 601 FLDLVKD-PVANVRINVAKHLPKILKLLDE 629 (759)
T ss_pred HHHhccC-CchhhhhhHHHHHHHHHhhcch
Confidence 2222221 2234677777777777666544
No 170
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=28.01 E-value=1.1e+03 Score=28.36 Aligned_cols=222 Identities=14% Similarity=0.191 Sum_probs=112.4
Q ss_pred HHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCC----CCcCcHHHHHHHHhcCCCC-chHHHHHHHH--HHHHHHHHH
Q psy6178 399 CFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLP----EENDVVPKVVEAILHLPPS-THIAVRYTSL--LLLGELCEW 471 (912)
Q Consensus 399 ~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~----~~~~~l~~l~~~l~~~~~~-~~~~v~~t~~--~~lg~y~~~ 471 (912)
+++.+.+.+. +++++ +.++..++.++..=.. ...+.++.+++++...+.. ....+...++ -.--+++.-
T Consensus 373 lIPkLv~LL~--d~~~~--~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaql 448 (708)
T PF05804_consen 373 LIPKLVELLK--DPNFR--EVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQL 448 (708)
T ss_pred CcHHHHHHhC--CCchH--HHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHH
Confidence 4455555554 34444 5788888888763111 1346788999988776542 1222211111 112344443
Q ss_pred HhcCcCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh---hhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q psy6178 472 IDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTAC---CTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAII 548 (912)
Q Consensus 472 l~~~p~~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~~---~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~v 548 (912)
+.. ..-|+.++...++ ..+| ..-+.+++++..- +..+.+|+..|+..+. .. ++...++|++|.+
T Consensus 449 m~~-g~gL~~L~~ra~~-~~D~----lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~---~~----~~ee~~vE~LGiL 515 (708)
T PF05804_consen 449 MCE-GNGLQSLMKRALK-TRDP----LLLKLIRNISQHDGPLKELFVDFIGDLAKIVS---SG----DSEEFVVECLGIL 515 (708)
T ss_pred HHh-cCcHHHHHHHHHh-cccH----HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh---cC----CcHHHHHHHHHHH
Confidence 332 2345555554433 1222 1224566666542 3345566666655432 21 2345788888887
Q ss_pred HhcC-CHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHH--HHhHhHH
Q psy6178 549 VSDM-PQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGV--ITELWPV 625 (912)
Q Consensus 549 i~~~-p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~--~~~~~~~ 625 (912)
..-. |+.+....+.. -.++.-+...+......+ ......+-.+|++... + -+... -..+.+.
T Consensus 516 aNL~~~~ld~~~ll~~--~~llp~L~~~L~~g~~~d----Dl~LE~Vi~~gtla~d--~-------~~A~lL~~sgli~~ 580 (708)
T PF05804_consen 516 ANLTIPDLDWAQLLQE--YNLLPWLKDLLKPGASED----DLLLEVVILLGTLASD--P-------ECAPLLAKSGLIPT 580 (708)
T ss_pred HhcccCCcCHHHHHHh--CCHHHHHHHHhCCCCCCh----HHHHHHHHHHHHHHCC--H-------HHHHHHHhCChHHH
Confidence 6533 33344444432 134444455554321111 1112233344544321 1 12222 2356777
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHH
Q psy6178 626 LSKTCETYQQDARVMEHSSRCLRYAIR 652 (912)
Q Consensus 626 l~~~l~~~~~~~~v~e~~~~~~~~~~~ 652 (912)
+..++.....|.+++-++..+|.+++.
T Consensus 581 Li~LL~~kqeDdE~VlQil~~f~~ll~ 607 (708)
T PF05804_consen 581 LIELLNAKQEDDEIVLQILYVFYQLLF 607 (708)
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHc
Confidence 788888888889998888888887765
No 171
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=27.73 E-value=4.7e+02 Score=23.77 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=41.1
Q ss_pred HHHHhcCcCcHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhhhhhhcH--HHHHHHHHHhhh
Q psy6178 469 CEWIDKHPHTLETILNFLLHCLQQ--PGLASVTANALQSISTACCTHMVGHF--NGLLQIIQCLDT 530 (912)
Q Consensus 469 ~~~l~~~p~~l~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~~~L~~~~--~~ll~~~~~l~~ 530 (912)
|+-+...+..-..++..+-..|.+ |.++..|-..+..+.+.|...+...+ ..|++.+..+..
T Consensus 25 cD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~ 90 (133)
T smart00288 25 CDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIK 90 (133)
T ss_pred HHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHc
Confidence 444444455556666777777765 45889999999999999988665443 335665555443
No 172
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=26.50 E-value=1.1e+02 Score=22.61 Aligned_cols=42 Identities=10% Similarity=0.149 Sum_probs=26.1
Q ss_pred hChHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHhhhhhh
Q psy6178 852 VDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESA 897 (912)
Q Consensus 852 ~~~~~~~~wl~~~l~~~p~~~~~~~~~~t~~~k~~f~~~l~~~~~~ 897 (912)
.||++++++-.+...-+-+. ...++++-|..|+++++-.|+.
T Consensus 8 cYp~~~~~Fp~~L~~lL~~~----~~~L~p~lR~~lv~aLiLLRnK 49 (52)
T PF08158_consen 8 CYPKETKDFPQELIDLLRNH----HTVLDPDLRMKLVKALILLRNK 49 (52)
T ss_pred ccHHHHHHHHHHHHHHHHhc----cccCCHHHHHHHHHHHHHHHcc
Confidence 45655554444333322221 2269999999999999977754
No 173
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=25.87 E-value=8.3e+02 Score=26.02 Aligned_cols=210 Identities=11% Similarity=0.116 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHHHhch-----hhHHhHHHHHHHHHHHHhcCCCcchHHhHHHHHHHhcCccchHHHHHHHHHHhHHH
Q psy6178 638 RVMEHSSRCLRYAIRCVGK-----DFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPT 712 (912)
Q Consensus 638 ~v~e~~~~~~~~~~~~l~~-----~~~p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~~~~~~~l~~l~~~l~~~~ 712 (912)
-|..++-+++..++..+|. ++.-+.+.+++.+..+- ..--+.+|.+...-+-..|. .+..++..++...
T Consensus 70 GVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~as-i~Vkp~lL~i~e~~~lpL~~-----~L~p~l~~li~sl 143 (307)
T PF04118_consen 70 GVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYAS-IQVKPQLLDIYEKYYLPLGP-----ALRPCLKGLILSL 143 (307)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhcCccH-----HHHHHHHHHHHHh
Confidence 3556666666666666654 33334455554433221 11112344443333323332 3444444444433
Q ss_pred HHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccCchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhhccCCCCcc
Q psy6178 713 YAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDK 792 (912)
Q Consensus 713 ~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~ 792 (912)
+.-+.. +..|.-+.-+.++..+-...... .+.+.++.+. ...+..-..|+.|+..-+.......
T Consensus 144 LpGLed-----e~sE~~~~~~~ll~~l~~~v~~~----~F~~~lwl~i-----i~sp~~Rl~al~~l~~~l~~~~~~~-- 207 (307)
T PF04118_consen 144 LPGLED-----EGSEFFDRTLKLLDKLKEAVGDK----YFWQCLWLCI-----ITSPSRRLGALNYLLRRLPKFQNDE-- 207 (307)
T ss_pred cccccc-----CCchHHHHHHHHHHHHHHhcChh----HHHHHHHHHH-----hcCcchhHHHHHHHHHhCCcccccc--
Confidence 332321 33445455555555554332211 2334444433 2444445677888876554332110
Q ss_pred cCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccccCCCcchhhHHHHHHHHHHhChHHHHHHHHHHHhcCCCCC
Q psy6178 793 DGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNT 872 (912)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~~~~~~~~~~~a~vL~~l~~~~~~~~~~wl~~~l~~~p~~~ 872 (912)
.. ........++...-..+++++..++..+ ++ ++ -+..|.-.+..+|-..
T Consensus 208 -------~~----~~~~~~~~~~~~~~~Llv~al~~~L~D~----------~i---LV------qR~~LDlLl~~~PL~s 257 (307)
T PF04118_consen 208 -------LS----LSSEEQEYCLGPDPGLLVRALCACLEDE----------NI---LV------QRGFLDLLLSHFPLDS 257 (307)
T ss_pred -------cc----cchHHHHHhcCCCccHHHHHHHHHhCCc----------hH---HH------HHHHHHHHHHhCCCCC
Confidence 00 0011223344444455566655555432 11 11 1222222344566441
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhhhhhh
Q psy6178 873 PAGMNAATPEQLIEFHSQVTRSESAYD 899 (912)
Q Consensus 873 ~~~~~~~t~~~k~~f~~~l~~~~~~~~ 899 (912)
..=...+++++|...+.+..+.--.|+
T Consensus 258 ~~~~~~~~~~d~~~Lv~a~l~~~lrrD 284 (307)
T PF04118_consen 258 PVLQSLLSPEDKELLVMAALKVVLRRD 284 (307)
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhHhh
Confidence 100013899999999999987755444
No 174
>KOG3723|consensus
Probab=25.87 E-value=5.6e+02 Score=29.27 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=41.6
Q ss_pred HHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC
Q psy6178 421 LYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG 494 (912)
Q Consensus 421 L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~ 494 (912)
|..+..+.+.-++--.+++|.+...|++... ....+.....-+| -++.++.|...++++...+.+.+
T Consensus 183 LrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p-~~~~ll~~l~~LI------~Qk~~evL~~ciP~L~g~l~ds~ 249 (851)
T KOG3723|consen 183 LRVLSAVYEKQPQPINPHLPELLALLSQLEP-EQYHLLRLLHVLI------KQKQLEVLQKCIPFLIGHLKDST 249 (851)
T ss_pred HHHHHHHHhcCCCccCcccHHHHHHhcCCCH-HHHHHHHHHHHHH------HhccHHHHHHHHHHHHHHhcccc
Confidence 4556667776655567889999888765421 1122222222222 23568889999999988887755
No 175
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=25.17 E-value=2.9e+02 Score=29.13 Aligned_cols=102 Identities=13% Similarity=0.200 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChh---HHHHHHHHhccCCCcchHH-HHHHHHHHHHHhhcccCCCCcc
Q psy6178 7 LDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIY---AWKIADEMLLHQNELGLEA-VYFSAQTMRQKVQNAFFELPSE 82 (912)
Q Consensus 7 ~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~---aw~~~~~lL~~~~~~~~~v-r~faa~~L~~ki~~~w~~l~~~ 82 (912)
++.|.++++.+..-...+.....+.+|...-++-. .|.+...|+..--. .-+ .|| -..-..... ........
T Consensus 2 ~~~~~~~l~~f~~~k~~~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~kl~--~v~~e~~-~~~p~~~~~-~~~~~~~~ 77 (288)
T PF09184_consen 2 IEELLDALENFMKIKSKELPPELEDILEHIAKTGETWYPWSLLKSLFRHKLE--KVIDEFF-ESAPEESGP-QNPNVEPE 77 (288)
T ss_pred hHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHH--HHHHHHH-hcCccccCC-CCCCcchh
Confidence 56788888888765555677788888888777643 47777766665211 111 222 000001111 11233345
Q ss_pred cHHHHHHHHHHHHHHhccCCChhHHHHHHHHH
Q psy6178 83 SHVSLRDSLIEHLCRTNDTSGKNIITQLALAL 114 (912)
Q Consensus 83 ~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~l 114 (912)
....+|..++.++..|.. +| +...+||-.|
T Consensus 78 ~~~~~~~~~~~~~~~f~~-~P-fTiqRlcEl~ 107 (288)
T PF09184_consen 78 DYEEMKERILELLDSFDE-PP-FTIQRLCELL 107 (288)
T ss_pred hHHHHHHHHHHHHHhcCC-CC-hhHHHHHHHH
Confidence 678899999999988875 66 9999999643
No 176
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=24.86 E-value=2.6e+02 Score=24.90 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHhccCCChhhHHHHHHHHHHhhc-ChhHHHHH---------HHHhccCCCcchHHHHHHHHHHHHHhhcc
Q psy6178 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQK-SIYAWKIA---------DEMLLHQNELGLEAVYFSAQTMRQKVQNA 75 (912)
Q Consensus 6 ~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~-s~~aw~~~---------~~lL~~~~~~~~~vr~faa~~L~~ki~~~ 75 (912)
+.+-+..+++.|..+.|+....-|-.-|-+|-+ .|++-.++ ..|+++ ++ ++||+-|..+++.-+.+.
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h-~d--~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH-ED--PEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS--SS--HHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC-CC--HHHHHHHHHHHHHHHHhc
Confidence 445566666666555567666666666666544 46665444 566776 44 899999999999999988
Q ss_pred cC
Q psy6178 76 FF 77 (912)
Q Consensus 76 w~ 77 (912)
|.
T Consensus 118 w~ 119 (119)
T PF11698_consen 118 WE 119 (119)
T ss_dssp --
T ss_pred CC
Confidence 84
No 177
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=24.81 E-value=2.4e+02 Score=25.02 Aligned_cols=73 Identities=14% Similarity=0.233 Sum_probs=48.3
Q ss_pred CcHHHHHHHHhcCCC-CchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy6178 437 DVVPKVVEAILHLPP-STHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTA 509 (912)
Q Consensus 437 ~~l~~l~~~l~~~~~-~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~ 509 (912)
++++.+++.+..... ...+..+.++.-+++..+.=..-.++.+..++..++...........+--++..+|+.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 456777777655433 4567889999999999887666567777777777777665433334555555555533
No 178
>KOG0414|consensus
Probab=24.50 E-value=1.4e+03 Score=29.03 Aligned_cols=114 Identities=12% Similarity=0.222 Sum_probs=64.9
Q ss_pred HHHHHhHhHHHHHHHHh--hccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCCCcchHHhHHHHHHHhc
Q psy6178 616 QGVITELWPVLSKTCET--YQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYA 693 (912)
Q Consensus 616 ~~~~~~~~~~l~~~l~~--~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g 693 (912)
..++.++.|++..++.. ..+|+++..++.-++.+++..--+.+...+|-++ +..+++|.+-. =+.++-..|
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llf----timeksp~p~I---RsN~Vvalg 986 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLF----TIMEKSPSPRI---RSNLVVALG 986 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHhcCCCcee---eecchhecc
Confidence 34678889999999976 4467999888888888765432222322332222 23333333211 111222233
Q ss_pred CccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhC
Q psy6178 694 TSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRA 743 (912)
Q Consensus 694 ~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~ 743 (912)
+ ..-.+.+++++...+.+..|. +++|++.+..+-.++.++.+.
T Consensus 987 D--lav~fpnlie~~T~~Ly~rL~-----D~~~~vRkta~lvlshLILnd 1029 (1251)
T KOG0414|consen 987 D--LAVRFPNLIEPWTEHLYRRLR-----DESPSVRKTALLVLSHLILND 1029 (1251)
T ss_pred c--hhhhcccccchhhHHHHHHhc-----CccHHHHHHHHHHHHHHHHhh
Confidence 3 111244566666666666665 367888888877777666543
No 179
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=24.39 E-value=1.4e+02 Score=25.06 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=36.8
Q ss_pred chhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q psy6178 416 QTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELC 469 (912)
Q Consensus 416 ~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~ 469 (912)
++-+++.+|+++....+-.--+.+|.++..|.+...+ +..++.|+=.+++.|-
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFk 57 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFK 57 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHH
Confidence 4678899999999988766667899999888877664 4567777777776543
No 180
>KOG2199|consensus
Probab=23.87 E-value=5.4e+02 Score=27.97 Aligned_cols=54 Identities=15% Similarity=0.307 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhhhhhhc
Q psy6178 464 LLGELCEWIDKHPHTLETILNFLLHCLQQ--PGLASVTANALQSISTACCTHMVGH 517 (912)
Q Consensus 464 ~lg~y~~~l~~~p~~l~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~~~L~~~ 517 (912)
+|-..|+-+...|+.-..++.++.+.|.+ |+|...|-..+..+...|++.+...
T Consensus 28 ~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~E 83 (462)
T KOG2199|consen 28 LILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLE 83 (462)
T ss_pred HHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHH
Confidence 34445555566788888899999999986 6799999999999999999866533
No 181
>KOG2038|consensus
Probab=23.60 E-value=1.3e+03 Score=27.67 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=47.4
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHH
Q psy6178 441 KVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSISTA 509 (912)
Q Consensus 441 ~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~ 509 (912)
++++.|-.+.-++-+.|+..++.+| ...+...|+.=..+|..++..|++|. +++.|++.|..|-..
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti---~~lL~~kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~ 371 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTI---YDLLTNKPEQENNLLVLLVNKLGDPQNKIASKASYLLEGLLAK 371 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHH---HHHHhCCcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhh
Confidence 3444444443344566777766665 45677789887888888999999986 889999999888654
No 182
>KOG1517|consensus
Probab=22.76 E-value=7.4e+02 Score=30.92 Aligned_cols=95 Identities=16% Similarity=0.177 Sum_probs=61.6
Q ss_pred chhHHHHHHHHhhcccCCCCcCcH-HHHHHHHhcCCCC-chHHHHHHHHHHHHHHHHHHhcC--cCcHHHHHHHHHHhcC
Q psy6178 416 QTEAALYIMQSVAKNVLPEENDVV-PKVVEAILHLPPS-THIAVRYTSLLLLGELCEWIDKH--PHTLETILNFLLHCLQ 491 (912)
Q Consensus 416 ~~Ea~L~~l~~iae~~~~~~~~~l-~~l~~~l~~~~~~-~~~~v~~t~~~~lg~y~~~l~~~--p~~l~~~l~~l~~~l~ 491 (912)
+.--|-|.|..+..+........+ .+++.+.+...++ ++|.+|+=.|.+||+.-+-+... .-.=..+.+.+...+.
T Consensus 573 qrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls 652 (1387)
T KOG1517|consen 573 QRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS 652 (1387)
T ss_pred HHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc
Confidence 445667888888888765433332 2455543333333 47999999999999876533211 1112345566666677
Q ss_pred C--CChHHHHHHHHHHHHHHh
Q psy6178 492 Q--PGLASVTANALQSISTAC 510 (912)
Q Consensus 492 ~--~~v~~~A~~al~~l~~~~ 510 (912)
+ |+|+.+|..||..|....
T Consensus 653 D~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 653 DPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred CccHHHHHHHHHHHHHHhccc
Confidence 6 579999999999998753
No 183
>KOG4224|consensus
Probab=22.74 E-value=1.8e+02 Score=31.02 Aligned_cols=120 Identities=17% Similarity=0.216 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcC---cCcHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhhh
Q psy6178 439 VPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKH---PHTLETILNFLLHCLQQP--GLASVTANALQSISTACCTH 513 (912)
Q Consensus 439 l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~---p~~l~~~l~~l~~~l~~~--~v~~~A~~al~~l~~~~~~~ 513 (912)
+|-+++.+. ..++.+++-++..||..+---..+ -+.=|.+++.++.-+.++ ++.-.|..|++.+..+-+-.
T Consensus 210 lpvLVsll~----s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 210 LPVLVSLLK----SGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred chhhhhhhc----cCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh
Confidence 455555432 246888888888887655321111 122234555555556654 58899999999998775532
Q ss_pred --hh--hcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHhHH
Q psy6178 514 --MV--GHFNGLLQIIQCLDTLSISNDAAIGLLKGVAII--VSDMPQDQISEALKQLCLVQVK 570 (912)
Q Consensus 514 --L~--~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~v--i~~~p~~~~~~~l~~l~~p~~~ 570 (912)
++ .-+|.++..++ ... --.+.+.++.| ++..|-.+..-.=..++.|++.
T Consensus 286 ~eiv~ag~lP~lv~Llq----s~~----~plilasVaCIrnisihplNe~lI~dagfl~pLVr 340 (550)
T KOG4224|consen 286 REIVEAGSLPLLVELLQ----SPM----GPLILASVACIRNISIHPLNEVLIADAGFLRPLVR 340 (550)
T ss_pred hHHHhcCCchHHHHHHh----Ccc----hhHHHHHHHHHhhcccccCcccceecccchhHHHH
Confidence 22 34555555543 111 12355566666 5554533322223456666653
No 184
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=22.22 E-value=2.1e+03 Score=29.49 Aligned_cols=206 Identities=8% Similarity=0.128 Sum_probs=107.6
Q ss_pred chHHHHHHHHHHHHHHHH-HHhcCc--------CcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhcHHHHHH
Q psy6178 453 THIAVRYTSLLLLGELCE-WIDKHP--------HTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQ 523 (912)
Q Consensus 453 ~~~~v~~t~~~~lg~y~~-~l~~~p--------~~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~ 523 (912)
.+..++.-++..|.+.+- ++.... ++|.+ |..++..-.+++++......+..+...+...+..-+..++.
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkP-fe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKP-FVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHH-HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 345677777777777665 443211 24433 34444544556799999999999999998888888888888
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHH
Q psy6178 524 IIQCLDTLSISNDAAIGLLKGVAIIVSD----MPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAA 599 (912)
Q Consensus 524 ~~~~l~~~~~~~~~~~~l~eai~~vi~~----~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 599 (912)
.+...... -....-...++.+..|++. ++... ......++..+.+...+.. +.+ .-...++.|..
T Consensus 1228 VLs~aa~d-~~e~iV~lAFetl~~I~~d~f~~l~~~~-----~~~F~DlV~cL~~Fa~q~~--~~n---ISL~AI~lL~~ 1296 (1780)
T PLN03076 1228 VFTTAAYD-DHKNIVLLAFEIIEKIIREYFPYITETE-----TTTFTDCVNCLIAFTNSRF--NKD---ISLNAIAFLRF 1296 (1780)
T ss_pred HHHHHHhC-ccHHHHHHHHHHHHHHHHhhhhhccccc-----hhHHHHHHHHHHHHHhCcC--ccc---ccHHHHHHHHH
Confidence 87644321 1222234455666555432 11000 0112223333333333221 111 01223333332
Q ss_pred Hhhhc-----C---CCc-------------CC-CCCC-h--HHHHHhH-hHHHHHHHHh-hccchhHHHHHHHHHHHHHH
Q psy6178 600 IFKHT-----S---PRI-------------MS-EPHP-C--QGVITEL-WPVLSKTCET-YQQDARVMEHSSRCLRYAIR 652 (912)
Q Consensus 600 ~~~~l-----~---~~~-------------~~-~~~~-~--~~~~~~~-~~~l~~~l~~-~~~~~~v~e~~~~~~~~~~~ 652 (912)
+...+ . ... .. ...+ + ......+ +|++..+... ...+.+|+..+...+-+++.
T Consensus 1297 ~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~ 1376 (1780)
T PLN03076 1297 CATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLR 1376 (1780)
T ss_pred HHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 22211 0 000 00 0000 0 1111234 4555555443 23579999999999999999
Q ss_pred HhchhhHH---------hHHHHHHHHH
Q psy6178 653 CVGKDFAH---------LLEPLVKQIV 670 (912)
Q Consensus 653 ~l~~~~~p---------~l~~l~~~l~ 670 (912)
..|..|.| .|.|+++.+-
T Consensus 1377 ~yG~~Fs~~~W~~if~~VLFPIFd~l~ 1403 (1780)
T PLN03076 1377 NHGHLFSLPLWERVFESVLFPIFDYVR 1403 (1780)
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99988876 4566665543
No 185
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=22.13 E-value=4.2e+02 Score=24.04 Aligned_cols=91 Identities=18% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHhhhHhc-----CcHHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC------CcCcHHHHHHHHhcCCCCc
Q psy6178 385 ELVKDVVFIV-----GSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE------ENDVVPKVVEAILHLPPST 453 (912)
Q Consensus 385 d~l~~~~~~l-----~~~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~------~~~~l~~l~~~l~~~~~~~ 453 (912)
+.+..+|..+ |+...+..+..++..++++-+ --||.++.++...|... ..+++..++.++..- ...
T Consensus 19 ~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vq--l~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~~ 95 (133)
T cd03561 19 ALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQ--LLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PKY 95 (133)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CCC
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC-cCc
Q psy6178 454 HIAVRYTSLLLLGELCEWIDKH-PHT 478 (912)
Q Consensus 454 ~~~v~~t~~~~lg~y~~~l~~~-p~~ 478 (912)
++.|+..++.++...+..|..+ |++
T Consensus 96 ~~~Vk~kil~ll~~W~~~f~~~~~~~ 121 (133)
T cd03561 96 DPKVREKALELILAWSESFGGHSEDL 121 (133)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCccc
No 186
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=21.89 E-value=1e+03 Score=25.62 Aligned_cols=104 Identities=14% Similarity=0.204 Sum_probs=56.1
Q ss_pred CCchHHHHHHHHHHHHHhCCccccC----c-hh-hHHHHHHHHHhcc-cCC--------chhHHHHHHHHHHHhhccCCC
Q psy6178 725 HPDTVDDLFRLCTRFLQRAPIAFLT----S-SF-ISSVMQCGILATH-LDH--------REANSTVMKFFYDLIHNNRVL 789 (912)
Q Consensus 725 ~pd~~~~~f~l~~~~l~~~p~~~l~----~-~~-l~~i~~~~~~~l~-~~~--------~~~~~~~~~fl~~li~~~~~~ 789 (912)
.+.++...++|+..++.+..+.... . ++ +..+-..+...-. ... +..=....+|+..++..+.
T Consensus 69 ~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~-- 146 (330)
T PF11707_consen 69 KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGD-- 146 (330)
T ss_pred cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCC--
Confidence 3778889999999999855533321 0 11 1111111100010 011 1333456788888887652
Q ss_pred CcccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccccCCCcchhhHHHHHHHHHH
Q psy6178 790 SDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELIS 851 (912)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~~~~~~~~~~~a~vL~~l~~ 851 (912)
....++++..++. +..++.++.. =|.+.+..+-++|..-+.
T Consensus 147 ------------------~~~~~~lL~~~~~--~~~l~k~l~~-D~~~~v~~iL~~l~~~Vl 187 (330)
T PF11707_consen 147 ------------------PELKRDLLSQKKL--MSALFKGLRK-DPPETVILILETLKDKVL 187 (330)
T ss_pred ------------------HHHHHHHHHcCch--HHHHHhcccC-CCHHHHHHHHHHHHHHhc
Confidence 1255677776555 7788887764 344555555555554443
No 187
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=21.78 E-value=4.3e+02 Score=24.58 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=30.3
Q ss_pred CcCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhh
Q psy6178 475 HPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMV 515 (912)
Q Consensus 475 ~p~~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~~~~~L~ 515 (912)
+...|.++|.|+.+.+.+|+.......+...+.+-+...+.
T Consensus 72 de~~L~piL~Fl~k~i~~pr~~~~l~~v~~~ildiY~~~~~ 112 (148)
T PF09384_consen 72 DEESLEPILKFLIKNITDPRYTRILVDVANIILDIYSPVIG 112 (148)
T ss_pred CHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999998666666666666655555444
No 188
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=21.71 E-value=1.1e+03 Score=25.90 Aligned_cols=88 Identities=11% Similarity=0.200 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHhC---CccccC---chhhHHHHHHHHHhcccC-CchhHHHHHHHHHHHhhccCCCCcccCccccCC
Q psy6178 728 TVDDLFRLCTRFLQRA---PIAFLT---SSFISSVMQCGILATHLD-HREANSTVMKFFYDLIHNNRVLSDKDGKKKAVS 800 (912)
Q Consensus 728 ~~~~~f~l~~~~l~~~---p~~~l~---~~~l~~i~~~~~~~l~~~-~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~ 800 (912)
-...-..|+..+++.- +..... ...+..++.|.+ .++ ++..-+-+..++..+++.+...+ +
T Consensus 227 ~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~---~v~e~~~~k~~a~e~l~~mv~~~~~~~---------~ 294 (373)
T PF14911_consen 227 RLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLM---LVNEEPQVKKLATELLQYMVESCQVGS---------S 294 (373)
T ss_pred cHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHh---hcCCCcchhHHHHHHHHHHHHcccccC---------c
Confidence 4456667777777762 211111 123456666653 344 56667888999999998776332 1
Q ss_pred CCchHHHHHHHHHHHHHhhHHHHHHHH
Q psy6178 801 EEDFDMRHRLMKDIVSKHGQALVSNLL 827 (912)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~g~~lv~~ll 827 (912)
....+.....+++++++|+..-.+..+
T Consensus 295 ~~~~~~l~s~lrsfvqk~l~~~t~~~f 321 (373)
T PF14911_consen 295 GEPREQLTSVLRSFVQKYLAHYTYQYF 321 (373)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 223455566677777776655555444
No 189
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=21.53 E-value=8.5e+02 Score=24.62 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=64.4
Q ss_pred hHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCc---CcHHHHHHHHHHhc----
Q psy6178 418 EAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHP---HTLETILNFLLHCL---- 490 (912)
Q Consensus 418 Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p---~~l~~~l~~l~~~l---- 490 (912)
+..+..+..+.+-+..+. ...+.+++.|..+....+...+..+.+. |+.....++ .+|..++..+....
T Consensus 16 ~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rL---l~~lw~~~~r~f~~L~~~L~~~~~r~~~~~ 91 (234)
T PF12530_consen 16 ELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRL---LTLLWKANDRHFPFLQPLLLLLILRIPSSF 91 (234)
T ss_pred HHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHH---HHHHHHhCchHHHHHHHHHHHHHhhccccc
Confidence 344555555656554433 6677777776666544444444444443 344333344 34444444422211
Q ss_pred CC-C---ChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHH
Q psy6178 491 QQ-P---GLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIV 549 (912)
Q Consensus 491 ~~-~---~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi 549 (912)
.+ . +.....+.+++.+|+....+-.+.++.+...+. . .-+...+...++++..+.
T Consensus 92 ~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~---~-~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 92 SSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLN---Q-SCDEVAQALALEALAPLC 150 (234)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHh---c-cccHHHHHHHHHHHHHHH
Confidence 11 1 144566788999998866633333333333332 1 123335667778888777
Done!