Query psy6178
Match_columns 912
No_of_seqs 210 out of 1492
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 19:43:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x1g_F Cadmus; transport prote 100.0 1E-91 3.5E-96 877.7 74.4 873 1-912 1-964 (971)
2 2x19_B Importin-13; nuclear tr 100.0 1.1E-87 3.7E-92 842.4 86.0 872 1-912 18-952 (963)
3 3ibv_A Exportin-T; karyopherin 100.0 9.8E-87 3.4E-91 812.8 67.0 851 3-910 1-974 (980)
4 4hat_C Exportin-1; heat repeat 100.0 3.7E-83 1.2E-87 780.5 72.1 852 4-912 12-1005(1023)
5 3gjx_A Exportin-1; transport, 100.0 3E-81 1E-85 756.8 69.5 854 4-911 24-1024(1073)
6 3m1i_C Exportin-1; heat repeat 100.0 1E-74 3.4E-79 726.1 71.6 855 4-912 12-1005(1049)
7 3a6p_A Exportin-5; exportin-5, 100.0 3.5E-59 1.2E-63 585.7 48.1 865 5-912 8-1158(1204)
8 4fdd_A Transportin-1; heat rep 100.0 1.6E-38 5.5E-43 391.4 61.2 705 4-859 9-750 (852)
9 1wa5_C Importin alpha RE-expor 100.0 7.2E-39 2.5E-43 398.1 51.3 699 1-783 1-790 (960)
10 2bpt_A Importin beta-1 subunit 100.0 5.7E-36 1.9E-40 370.8 62.1 702 1-785 1-764 (861)
11 1qgr_A Protein (importin beta 100.0 2.8E-31 9.5E-36 329.4 58.6 677 9-765 2-744 (876)
12 1ibr_B P95, importin beta-1 su 99.9 3.3E-25 1.1E-29 253.3 31.2 420 9-491 2-461 (462)
13 1u6g_C TIP120 protein, CAND1; 99.8 5E-17 1.7E-21 208.0 53.2 667 8-786 6-723 (1230)
14 1qgr_A Protein (importin beta 99.7 1.4E-13 4.7E-18 170.3 46.0 346 411-786 339-724 (876)
15 4fdd_A Transportin-1; heat rep 99.7 2.9E-12 9.8E-17 157.5 57.3 666 20-786 59-786 (852)
16 2bpt_A Importin beta-1 subunit 99.7 2.9E-12 9.8E-17 158.1 51.2 636 8-747 94-818 (861)
17 1w9c_A CRM1 protein, exportin 99.6 1.2E-12 3.9E-17 134.0 26.9 224 659-911 68-316 (321)
18 1b3u_A Protein (protein phosph 99.3 3.4E-09 1.2E-13 124.3 39.1 544 5-650 7-585 (588)
19 1u6g_C TIP120 protein, CAND1; 99.3 9.9E-09 3.4E-13 131.2 44.0 578 58-787 20-682 (1230)
20 1b3u_A Protein (protein phosph 99.2 1.7E-08 5.9E-13 118.3 33.3 457 9-548 87-585 (588)
21 2qk1_A Protein STU2; STU2P, XM 98.6 1.5E-06 5.2E-11 88.5 18.4 198 410-666 26-235 (249)
22 2vgl_B AP-2 complex subunit be 98.4 0.00017 5.9E-09 83.8 31.3 452 18-548 58-530 (591)
23 1w63_A Adapter-related protein 98.2 0.0033 1.1E-07 73.2 37.2 454 21-549 82-576 (618)
24 1ibr_B P95, importin beta-1 su 98.2 4.3E-05 1.5E-09 86.1 20.5 279 383-674 109-418 (462)
25 2x1g_F Cadmus; transport prote 98.0 0.0013 4.6E-08 81.4 29.7 300 457-788 437-764 (971)
26 2qk2_A LP04448P; mini spindles 98.0 2E-05 6.9E-10 80.1 10.8 179 410-605 25-208 (242)
27 2qk1_A Protein STU2; STU2P, XM 98.0 0.00022 7.4E-09 72.5 17.3 175 399-575 61-245 (249)
28 1wa5_C Importin alpha RE-expor 98.0 0.0007 2.4E-08 83.7 25.3 279 403-694 460-795 (960)
29 2qk2_A LP04448P; mini spindles 97.8 0.00074 2.5E-08 68.4 18.9 188 453-665 27-219 (242)
30 2vgl_A Adaptor protein complex 97.8 0.051 1.7E-06 63.0 36.4 129 378-510 419-552 (621)
31 2x19_B Importin-13; nuclear tr 97.8 0.0011 3.8E-08 82.2 22.4 295 457-784 423-752 (963)
32 2vgl_B AP-2 complex subunit be 97.7 0.032 1.1E-06 64.6 32.0 313 411-785 97-420 (591)
33 1w63_A Adapter-related protein 97.6 0.045 1.5E-06 63.6 32.2 223 413-667 120-357 (618)
34 4hat_C Exportin-1; heat repeat 97.5 0.0041 1.4E-07 76.2 21.9 332 437-787 447-836 (1023)
35 3m1i_C Exportin-1; heat repeat 97.5 0.0054 1.8E-07 76.5 22.8 316 453-786 465-835 (1049)
36 2jdq_A Importin alpha-1 subuni 97.4 0.0097 3.3E-07 66.3 21.9 106 399-512 277-394 (450)
37 4b8j_A Importin subunit alpha- 97.2 0.025 8.6E-07 64.5 22.6 348 400-786 76-445 (528)
38 2jdq_A Importin alpha-1 subuni 97.2 0.017 5.9E-07 64.2 20.3 146 399-551 235-391 (450)
39 3gjx_A Exportin-1; transport, 97.0 0.033 1.1E-06 68.0 22.2 318 453-788 491-863 (1073)
40 4b8j_A Importin subunit alpha- 97.0 0.013 4.5E-07 66.9 17.7 353 400-785 119-497 (528)
41 2vgl_A Adaptor protein complex 96.8 1.2 4E-05 51.5 31.8 125 416-549 127-269 (621)
42 1wa5_B Importin alpha subunit; 96.7 0.041 1.4E-06 62.8 18.6 343 400-786 89-459 (530)
43 3ibv_A Exportin-T; karyopherin 96.5 0.063 2.2E-06 65.6 19.4 329 439-786 330-732 (980)
44 1wa5_B Importin alpha subunit; 96.5 0.16 5.5E-06 57.8 22.0 143 400-551 301-458 (530)
45 2iw3_A Elongation factor 3A; a 96.3 0.14 4.7E-06 61.4 19.7 238 418-686 70-316 (986)
46 3tpo_A Importin subunit alpha- 95.5 1.2 4E-05 50.5 22.6 107 400-512 295-410 (529)
47 3ul1_B Importin subunit alpha- 95.4 0.74 2.5E-05 51.9 20.2 313 438-787 101-433 (510)
48 2z6g_A B-catenin; FULL-length, 95.3 6.8 0.00023 46.6 29.7 172 10-208 117-304 (780)
49 3ul1_B Importin subunit alpha- 95.2 1.2 4E-05 50.2 21.4 107 400-512 276-391 (510)
50 3tpo_A Importin subunit alpha- 95.2 0.5 1.7E-05 53.6 18.4 310 437-787 119-452 (529)
51 2z6g_A B-catenin; FULL-length, 95.1 7.7 0.00026 46.1 33.7 126 18-152 159-304 (780)
52 2of3_A ZYG-9; multifunctional 95.0 1.3 4.5E-05 44.3 18.2 136 318-473 103-239 (266)
53 4hxt_A De novo protein OR329; 95.0 0.056 1.9E-06 54.4 8.6 226 400-656 4-245 (252)
54 2iw3_A Elongation factor 3A; a 94.9 0.12 4.3E-06 61.8 12.2 192 345-549 89-323 (986)
55 3a6p_A Exportin-5; exportin-5, 94.7 13 0.00043 46.6 33.9 128 379-509 112-277 (1204)
56 3u0r_A Apoptosis inhibitor 5; 94.6 4 0.00014 43.9 21.4 275 454-748 41-365 (507)
57 1xqr_A HSPBP1 protein; armadil 93.8 0.32 1.1E-05 50.2 11.0 208 417-651 57-286 (296)
58 4db6_A Armadillo repeat protei 93.5 0.12 4.1E-06 50.4 6.9 137 411-552 23-169 (210)
59 4db8_A Armadillo-repeat protei 92.2 0.16 5.5E-06 51.0 6.0 142 399-551 55-210 (252)
60 1xqr_A HSPBP1 protein; armadil 92.1 0.61 2.1E-05 48.1 10.3 143 400-552 83-240 (296)
61 3ltj_A Alpharep-4; protein eng 91.5 1.8 6E-05 41.4 12.5 122 395-548 42-165 (201)
62 3ltm_A Alpha-REP4; protein eng 90.8 1.8 6.1E-05 41.8 11.8 122 395-548 47-170 (211)
63 1oyz_A Hypothetical protein YI 90.7 4.4 0.00015 41.0 15.3 145 379-548 39-186 (280)
64 2z6h_A Catenin beta-1, beta-ca 90.6 29 0.00098 40.0 33.6 125 19-152 24-168 (644)
65 4db6_A Armadillo repeat protei 90.0 0.8 2.7E-05 44.2 8.4 139 399-549 55-208 (210)
66 2db0_A 253AA long hypothetical 89.9 12 0.00041 34.6 16.2 210 398-650 32-244 (253)
67 3ltj_A Alpharep-4; protein eng 89.9 2.3 7.7E-05 40.7 11.5 104 379-507 61-166 (201)
68 1jdh_A Beta-catenin; beta-cate 88.2 29 0.00099 38.5 21.1 149 400-554 187-343 (529)
69 3now_A UNC-45 protein, SD10334 87.4 51 0.0017 38.7 31.9 142 400-551 582-738 (810)
70 3now_A UNC-45 protein, SD10334 87.0 54 0.0018 38.5 33.5 133 16-153 297-450 (810)
71 1jdh_A Beta-catenin; beta-cate 86.5 44 0.0015 37.0 33.4 114 16-138 24-155 (529)
72 4db8_A Armadillo-repeat protei 85.6 1.1 3.7E-05 44.8 6.3 213 414-650 26-249 (252)
73 1te4_A Conserved protein MTH18 82.9 0.62 2.1E-05 41.2 2.8 84 401-505 45-130 (131)
74 2z6h_A Catenin beta-1, beta-ca 81.9 78 0.0027 36.2 31.7 134 10-152 58-211 (644)
75 1vsy_4 Proteasome activator BL 78.5 1.1E+02 0.0038 35.9 22.9 86 561-654 598-689 (799)
76 1w9c_A CRM1 protein, exportin 78.4 29 0.00099 35.5 13.5 86 260-358 136-222 (321)
77 2db0_A 253AA long hypothetical 76.7 48 0.0016 30.7 14.6 175 437-652 32-210 (253)
78 1oyz_A Hypothetical protein YI 76.1 65 0.0022 32.0 23.2 179 12-206 27-218 (280)
79 3ltm_A Alpha-REP4; protein eng 75.7 54 0.0019 30.9 18.2 102 12-138 23-124 (211)
80 4ffb_C Protein STU2; tubulin f 74.6 6.4 0.00022 39.9 7.8 183 410-606 19-216 (278)
81 4hxt_A De novo protein OR329; 70.4 79 0.0027 30.4 23.3 134 10-153 4-157 (252)
82 1te4_A Conserved protein MTH18 69.1 4.5 0.00015 35.4 4.4 86 400-507 14-101 (131)
83 3tjz_B Coatomer subunit gamma; 68.5 24 0.00082 36.9 10.4 92 418-519 86-179 (355)
84 4ady_A RPN2, 26S proteasome re 65.6 65 0.0022 38.4 14.2 97 418-526 596-694 (963)
85 3nmw_A APC variant protein; AR 65.5 67 0.0023 33.6 13.4 151 400-554 172-338 (354)
86 3nmz_A APC variant protein; pr 64.7 78 0.0027 34.4 14.1 150 400-553 288-453 (458)
87 4ffb_C Protein STU2; tubulin f 63.1 21 0.00073 35.9 8.8 142 318-474 71-216 (278)
88 4atg_A TAF6; transcription, TF 61.8 1.1E+02 0.0036 28.8 13.8 126 399-525 45-180 (196)
89 2of3_A ZYG-9; multifunctional 57.8 82 0.0028 31.2 11.5 132 411-551 57-197 (266)
90 3tjz_B Coatomer subunit gamma; 56.3 19 0.00065 37.7 6.9 82 419-509 123-206 (355)
91 3tt9_A Plakophilin-2; cell adh 55.0 38 0.0013 33.0 8.5 145 399-548 53-227 (233)
92 1xm9_A Plakophilin 1; armadill 52.7 2.5E+02 0.0085 30.3 28.9 357 401-785 5-450 (457)
93 3b2a_A TON_1937, putative unch 52.2 69 0.0024 31.0 9.3 144 398-550 33-179 (265)
94 1vsy_4 Proteasome activator BL 51.3 3.5E+02 0.012 31.6 23.9 82 701-784 598-687 (799)
95 3nmw_A APC variant protein; AR 50.5 69 0.0023 33.5 10.3 141 400-550 129-292 (354)
96 3oc3_A Helicase MOT1, MOT1; re 49.4 34 0.0012 37.7 7.4 83 415-507 243-327 (800)
97 4ady_A RPN2, 26S proteasome re 47.9 1.1E+02 0.0036 36.6 12.0 61 397-466 506-567 (963)
98 3nmz_A APC variant protein; pr 47.8 1E+02 0.0035 33.5 11.4 142 400-551 245-409 (458)
99 3l9t_A Putative uncharacterize 46.6 48 0.0017 32.1 7.4 122 378-512 86-211 (240)
100 1xm9_A Plakophilin 1; armadill 44.0 1.6E+02 0.0056 31.7 12.6 122 438-572 3-136 (457)
101 2npp_B PP2A, B subunit, serine 43.0 3.4E+02 0.012 29.1 16.0 70 624-694 162-237 (449)
102 3oc3_A Helicase MOT1, MOT1; re 42.6 4E+02 0.014 29.7 16.5 138 43-204 173-323 (800)
103 3opb_A SWI5-dependent HO expre 40.2 1E+02 0.0034 35.8 10.1 154 419-579 578-759 (778)
104 4atg_A TAF6; transcription, TF 36.4 2.7E+02 0.0092 26.0 10.8 140 417-573 25-177 (196)
105 3opb_A SWI5-dependent HO expre 34.2 6.1E+02 0.021 29.4 44.1 145 399-551 458-636 (778)
106 3grl_A General vesicular trans 33.7 5.6E+02 0.019 28.9 14.7 108 398-512 21-155 (651)
107 3l9t_A Putative uncharacterize 30.4 3.8E+02 0.013 25.9 11.6 66 6-73 68-133 (240)
108 3gs3_A Symplekin, LD45768P; he 30.2 4E+02 0.014 26.1 15.6 81 421-504 33-115 (257)
109 3zyq_A Hepatocyte growth facto 29.2 3.8E+02 0.013 25.6 13.1 81 474-554 38-122 (226)
110 3l6x_A Catenin delta-1; cateni 29.0 6.4E+02 0.022 28.1 19.0 234 400-651 135-431 (584)
111 3b2a_A TON_1937, putative unch 27.9 4.3E+02 0.015 25.6 17.0 145 33-205 25-175 (265)
112 1x5b_A Signal transducing adap 22.2 4.3E+02 0.015 23.7 11.5 76 470-545 41-120 (163)
113 3o2t_A Symplekin; heat repeat, 22.0 6.9E+02 0.024 26.1 12.1 79 421-502 43-123 (386)
114 3fga_B Serine/threonine-protei 20.5 7.6E+02 0.026 25.9 16.2 69 625-694 130-204 (403)
No 1
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=1e-91 Score=877.75 Aligned_cols=873 Identities=16% Similarity=0.303 Sum_probs=709.7
Q ss_pred CCCCccHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCC
Q psy6178 1 MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELP 80 (912)
Q Consensus 1 m~~~~~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~ 80 (912)
|+ +.++++++++++++|+ +|++.|++|++||++||++|++|.+|.+||..+.+ +++|||||++|+++|+++|..+|
T Consensus 1 m~-~~d~~~l~~~l~~~~~-~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~--~~vr~~aa~~L~~~i~~~w~~l~ 76 (971)
T 2x1g_F 1 ME-PIDIARLEEAVVSFYR-SNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKS--QEVQFFGAITLHSKLMKHWHEVP 76 (971)
T ss_dssp -----------CTHHHHHT-STTTC----CHHHHHTTTSTHHHHHHHHHTCTTSC--HHHHHHHHHHHHHHHHHCGGGCC
T ss_pred CC-hhhHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHccHhhCC
Confidence 77 5889999999999886 58889999999999999999999999999987655 99999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhcc-CcchHHHHHHHHhcc-------c-chHHHHHHHHhhh
Q psy6178 81 SESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS-AWEKPVVYIIEKLSH-------K-GSILALLEVLTVL 151 (912)
Q Consensus 81 ~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~~-~W~~~~~~l~~~~~~-------~-~~~~~~L~iL~~l 151 (912)
++++..+|+.|++++.+...+ |+.|++|+|.+++.++.+.. .||++++++++.+++ + ...+.++++|+.+
T Consensus 77 ~~~~~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l 155 (971)
T 2x1g_F 77 PENREELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAI 155 (971)
T ss_dssp GGGHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHh
Confidence 999999999999999886533 47999999999999999865 999999999999876 2 4678999999999
Q ss_pred hhhcccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCC------hHHHHHHHHHHHhhcC----------------
Q psy6178 152 PEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDN------VSLQTKVLKCFTSWSS---------------- 209 (912)
Q Consensus 152 ~ee~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~------~~~~~~~l~~l~sWi~---------------- 209 (912)
|||+...+ +..+|..+++.+..+++.+++++.++++...++ .+++..+++|+.+|+.
T Consensus 156 ~EEi~~~~-~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l 234 (971)
T 2x1g_F 156 PEEAQVIH-TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVL 234 (971)
T ss_dssp HHHHHHCC-CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHH
T ss_pred HHHHhccC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHH
Confidence 99977543 556788899999999999999999998764322 1688999999998662
Q ss_pred -----------------------CcchHHHHHHHHhhchhhhccCCchHHHHHHHHHHhchHHHHHHHhcCCCh---HHH
Q psy6178 210 -----------------------GSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDL---EKC 263 (912)
Q Consensus 210 -----------------------~~l~~~a~~~l~~~l~~~~~~~~~~~l~~~l~~~v~~l~~~~~~~~~~~d~---~~~ 263 (912)
++++++|++|+.++++..+. .++.+.+..++|.++++...+..++.++|. +.+
T Consensus 235 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~ 313 (971)
T 2x1g_F 235 LEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDC-HNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDII 313 (971)
T ss_dssp HHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGG-GGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHH
T ss_pred HhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccc-cccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHH
Confidence 22456899999999986432 345678888999988877766555566674 889
Q ss_pred hhHHHHHHHHHHHHHHHHH----hcccCCCcchh-hHHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhccc--
Q psy6178 264 MNYCKLFTELAESLLDRIV----NESMTKQQPFS-IKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVK-- 336 (912)
Q Consensus 264 ~~~~~l~~~l~~~~~~~l~----~~~~~~~~~~~-~~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~-- 336 (912)
..++++++.+++.+...+. +.. +..... ..+++.++.+++++++.. .++.++..+++||+.+.+...+.
T Consensus 314 ~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~ll~~~~~~~~~~--~~~~v~~~~l~fw~~l~~~~~~~~~ 389 (971)
T 2x1g_F 314 VHIYMLFVSSVERHSTLLLSGITSAD--PELSILVHRIVQEILHCTDKPGIYP--VEESCSTMALAFWYMLQDEVFAMSN 389 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTCC--HHHHHHHHHHHHHHHHHHHCSSCTT--TTCTTHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCc--ccccHHHHHHHHHHHHHHcCCCCCC--cchhhhHHHHHHHHHHHHHHHhccc
Confidence 9999999999999888776 211 000112 347888999887743220 12459999999999998854321
Q ss_pred --CchhhhhcchHHHHHHHHHHHhhcCCCCCCC---CCccccchHHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhc--
Q psy6178 337 --NDDSLTVLFKPHVERLIGALCKHCQLEPDLE---GLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHE-- 409 (912)
Q Consensus 337 --~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~---~~~ee~~~f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~-- 409 (912)
++......++|++.+++++++.|+.||+|++ |+.+|+++|.++|+.++|++++++.++|. .+++.+++.+.+
T Consensus 390 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~-~~l~~~~~~l~~~l 468 (971)
T 2x1g_F 390 DEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND-YILEILAAMLDEAI 468 (971)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHH
Confidence 1223456778999999999999999998753 55566789999999999999999999884 466666655543
Q ss_pred -----CCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCC-CchHHHHHHHHHHHHHHHHHHhcCcCcHHHHH
Q psy6178 410 -----NNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPP-STHIAVRYTSLLLLGELCEWIDKHPHTLETIL 483 (912)
Q Consensus 410 -----~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~-~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l 483 (912)
.+.+|+.+||++|+++++++++.....+.++++++.+.+++. ++||.||.++|+++|+|++|+..||+++++++
T Consensus 469 ~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl 548 (971)
T 2x1g_F 469 ADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAI 548 (971)
T ss_dssp HHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHH
T ss_pred HhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 237899999999999999999987777889999998888874 46999999999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhc-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy6178 484 NFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTL-SISNDAAIGLLKGVAIIVSDMPQDQISEALK 562 (912)
Q Consensus 484 ~~l~~~l~~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~-~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~ 562 (912)
++++.++ +|.|+.+||+||.+||++|+..|.||++.+++.+..+.+. .++.+.+..+++++|.+++++|.++..+++.
T Consensus 549 ~~l~~~l-~~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~ 627 (971)
T 2x1g_F 549 NLLVRGL-NSSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD 627 (971)
T ss_dssp HHHHHHH-HSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHHHh-ChHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999 4899999999999999999999999999999999876543 3567889999999999999998778899999
Q ss_pred HHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcC-CC-----CCChHHHHHhHhHHHHHHHHhhccc
Q psy6178 563 QLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIM-SE-----PHPCQGVITELWPVLSKTCETYQQD 636 (912)
Q Consensus 563 ~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~-----~~~~~~~~~~~~~~l~~~l~~~~~~ 636 (912)
.+++|++++++++++.... +++.+......+++|++++++++.... .. .+++.++.+++||++..+++.+.++
T Consensus 628 ~ll~~l~~~l~~~~~~~~~-~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 706 (971)
T 2x1g_F 628 IIVSPCFEELQAICQADSK-TPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEE 706 (971)
T ss_dssp HHHHHHHHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999998764320 111234456789999999999876422 11 5788999999999999999988888
Q ss_pred hhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCCCcchHHhHHHHHHHhcC-ccchHHHHHHHHHHhHHHHHh
Q psy6178 637 ARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYAT-SHCVSGLLDMVQAFLPPTYAI 715 (912)
Q Consensus 637 ~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~-~~~~~~l~~l~~~l~~~~~~~ 715 (912)
++++|++|.++++++.++|+++.||+|++++.++..|+.++.+|++++++.++..||. +.+.+.+.+++..++.+++.+
T Consensus 707 ~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 786 (971)
T 2x1g_F 707 IDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKL 786 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CCHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 678899999999999999999
Q ss_pred hcCc--CCCCCCCchHHHHHHHHHHHHHhCCccccCchh-hHHHHHHHHHhcccCCchhHHHHHHHHHHHhhccCCCCcc
Q psy6178 716 LQEE--DGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSF-ISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDK 792 (912)
Q Consensus 716 l~~~--~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~~~-l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~ 792 (912)
|++. +.+.++||++++||+|+.++++++|..+++++. +..++++++.+++.+|+++.+++++||..++..+..
T Consensus 787 l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~---- 862 (971)
T 2x1g_F 787 FESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRN---- 862 (971)
T ss_dssp HTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTT----
T ss_pred HhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCc----
Confidence 8863 245679999999999999999999999999898 999999999999999999999999999999987432
Q ss_pred cCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccccCCCcchhhHHHHHHHHHHhChHHHHHHHHHHHh--cCCC
Q psy6178 793 DGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTIS--QLPK 870 (912)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~~~~~~~~~~~a~vL~~l~~~~~~~~~~wl~~~l~--~~p~ 870 (912)
.+.+++++.++|+.|+..++.+++|+.||+.+++++++|+++..++|+++.+||.+++. .+|.
T Consensus 863 ---------------~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l~~~~~p~ 927 (971)
T 2x1g_F 863 ---------------HAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPT 927 (971)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTSSSCSC
T ss_pred ---------------hHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCcHHHHHHHHHHhcccCCCC
Confidence 23688999999999999999999999999999999999999999999999999999997 6887
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhh-hhhhHHHHHHHHHhhcC
Q psy6178 871 NTPAGMNAATPEQLIEFHSQVTRSE-SAYDVGQALKELSRLYR 912 (912)
Q Consensus 871 ~~~~~~~~~t~~~k~~f~~~l~~~~-~~~~~~~~~~~F~~~cr 912 (912)
. ++|+++|++|++++++.+ +.|+||+++++||..||
T Consensus 928 ~------~~~~~~~~~f~~~l~~~~~~~r~~~~~~~~f~~~~r 964 (971)
T 2x1g_F 928 Q------LITDADKTRYTALIIKEKVNKRLLQQHLSEMAMKTR 964 (971)
T ss_dssp S------SSCHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred C------cCCHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHc
Confidence 6 799999999999998886 88999999999999997
No 2
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1.1e-87 Score=842.35 Aligned_cols=872 Identities=24% Similarity=0.416 Sum_probs=741.1
Q ss_pred CCCCccHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCC
Q psy6178 1 MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELP 80 (912)
Q Consensus 1 m~~~~~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~ 80 (912)
|+ +.++++++++++++|.++|++.|++|+++|++||++|++|.+|..||..+.+ +++|||||++||++|+++|..+|
T Consensus 18 m~-~~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~--~~vr~~aa~~L~~~i~~~w~~l~ 94 (963)
T 2x19_B 18 AL-DFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKV--PEIQYFGASALHIKISRYWSDIP 94 (963)
T ss_dssp CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSC--HHHHHHHHHHHHHHHHHCGGGSC
T ss_pred CC-HhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHhCHHhCC
Confidence 56 4789999999999998889999999999999999999999999999987555 99999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhc-c-CcchHHHHHHHHhcc------c-chHHHHHHHHhhh
Q psy6178 81 SESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQM-S-AWEKPVVYIIEKLSH------K-GSILALLEVLTVL 151 (912)
Q Consensus 81 ~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~-~-~W~~~~~~l~~~~~~------~-~~~~~~L~iL~~l 151 (912)
++++..||+.|++++..+..+ |+.|++|+|.+++.++.+. + .||++++++++.+++ + ...+.++.+|+.+
T Consensus 95 ~~~~~~ir~~ll~~l~~~~~~-~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l 173 (963)
T 2x19_B 95 TDQYESLKAQLFTQITRFASG-SKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVL 173 (963)
T ss_dssp GGGHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhC
Confidence 999999999999999886533 4699999999999999974 4 799999999999875 3 3678999999999
Q ss_pred hhhcccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhc---------------------CC
Q psy6178 152 PEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS---------------------SG 210 (912)
Q Consensus 152 ~ee~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi---------------------~~ 210 (912)
+||+.+.+.+..+|..+++.+..+++.+++++.++++...++..+...+++|+.+|+ .+
T Consensus 174 ~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~ 253 (963)
T 2x19_B 174 PEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDS 253 (963)
T ss_dssp HHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTST
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCc
Confidence 999876444556788888888899999999999999875444458899999999998 25
Q ss_pred cchHHHHHHHHhhchhhhccCCchHHHHHHHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCc
Q psy6178 211 SLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQ 290 (912)
Q Consensus 211 ~l~~~a~~~l~~~l~~~~~~~~~~~l~~~l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 290 (912)
+++++|++|+.+++...+.. +..+.+..+++.++++.+.+.+++..+|.+....+|++++.+++.+...+.++. ...
T Consensus 254 ~~~~~a~~~l~~i~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~--~~~ 330 (963)
T 2x19_B 254 ELFDSSVEAIVNAISQPDAQ-RYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV--EHW 330 (963)
T ss_dssp TTHHHHHHHHHHHHTCTTGG-GCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCG--GGH
T ss_pred hHHHHHHHHHHHHHcccccc-cCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCc--cch
Confidence 67899999999999864332 245678888888888766666666678889999999999999999998887532 000
Q ss_pred chhhHHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCc---hhhhhcchHHHHHHHHHHHhhcCCCCCCC
Q psy6178 291 PFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKND---DSLTVLFKPHVERLIGALCKHCQLEPDLE 367 (912)
Q Consensus 291 ~~~~~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~---~~~~~~~~~~~~~ll~~l~~k~~~p~d~~ 367 (912)
.....++++++.++.+++... .+|.++..+++||+.+.+.+..... ......++|++.+++++++.+|.||+|++
T Consensus 331 ~~~~~~l~~ll~~~~~~~~~~--~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~ 408 (963)
T 2x19_B 331 QSFLALVNMIMFCTGIPGHYP--VNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEE 408 (963)
T ss_dssp HHHHHHHHHHHHHHTCSSCTT--TTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCC--chhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 012357899999998753210 1245899999999999986543211 23456778999999999999999998753
Q ss_pred ---CCccccchHHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhc------CCCCccchhHHHHHHHHhhcccCCCCcCc
Q psy6178 368 ---GLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHE------NNVMWEQTEAALYIMQSVAKNVLPEENDV 438 (912)
Q Consensus 368 ---~~~ee~~~f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~------~~~~w~~~Ea~L~~l~~iae~~~~~~~~~ 438 (912)
|+.||+++|.+||++++|++++++.++|.+ +++.+.+.+.+ .+.+|+.+||++|+++++++++.....+.
T Consensus 409 ~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~ 487 (963)
T 2x19_B 409 YGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDV 487 (963)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSH
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHH
Confidence 666667899999999999999999998854 55555544432 35689999999999999999998777788
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhcH
Q psy6178 439 VPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHF 518 (912)
Q Consensus 439 l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~~~~~L~~~~ 518 (912)
++++++.+.+++. +||.||.++++++|+|++|+..||+++++++++++.++++|.|+.+||+||.+||++|+..+.||+
T Consensus 488 l~~l~~~l~~l~~-~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~~~V~~~A~~al~~l~~~~~~~l~p~~ 566 (963)
T 2x19_B 488 VPGLIGLIPRISI-SNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDLPPYA 566 (963)
T ss_dssp HHHHHHHGGGSCC-CSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTCGGGHHHHHHHHHHHHHHTGGGCTTTH
T ss_pred HHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999998888775 489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHH
Q psy6178 519 NGLLQIIQCLDTL-SISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRL 597 (912)
Q Consensus 519 ~~ll~~~~~l~~~-~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l 597 (912)
+.+++.+..+.+. .++.+.+..+++|+|.++.++|.++..+++..++.|+.+.|+++.+.. .++..+......++++
T Consensus 567 ~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 567 ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI--PNPSNKLAIVHILGLL 644 (963)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 9999999876543 356778999999999999998867889999999999999999886533 1222223445678999
Q ss_pred HHHhhhcCCCcC---------------CCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhH
Q psy6178 598 AAIFKHTSPRIM---------------SEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLL 662 (912)
Q Consensus 598 ~~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l 662 (912)
++++++++...+ +..+|+.++.+++||++..+++.+.+++++.|.+|.++++++.++|+++.||+
T Consensus 645 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l 724 (963)
T 2x19_B 645 SNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMV 724 (963)
T ss_dssp HHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGH
T ss_pred HHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccH
Confidence 999999875331 13477889999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcchHHhHHHHHHHhcC-ccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHH
Q psy6178 663 EPLVKQIVVLYSKHPHSSFLYLGSILVDEYAT-SHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQ 741 (912)
Q Consensus 663 ~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~-~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~ 741 (912)
|++++.++..|...+.++++++++.++..||. +.+.+.+.+++..++..++++++. .+.++||++++||.|+.++++
T Consensus 725 ~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~--~~~~~pd~~~~~f~ll~~~~~ 802 (963)
T 2x19_B 725 PQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQ--GPRDHPDIVDSFMQLLAQALK 802 (963)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHH--CTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhh--CcccCchHHHHHHHHHHHHHH
Confidence 99999999999988899999999999999988 557788888999999999998874 567789999999999999999
Q ss_pred hCCccccCchh-hHHHHHHHHHhcccCCchhHHHHHHHHHHHhhccCCCCcccCccccCCCCchHHHHHHHHHHHHHhhH
Q psy6178 742 RAPIAFLTSSF-ISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQ 820 (912)
Q Consensus 742 ~~p~~~l~~~~-l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 820 (912)
++|..+++++. +..++++++.+++..|+++.+++++||.++++.++..+ .+++++.++|+
T Consensus 803 ~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~-------------------~~~~~~~~~~~ 863 (963)
T 2x19_B 803 RKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVE-------------------SVGKVVQEDGR 863 (963)
T ss_dssp HCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSC-------------------HHHHHTTTSHH
T ss_pred hCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChH-------------------HHHHHHHHHHH
Confidence 99999988777 99999999999999999999999999999998765322 57788889999
Q ss_pred HHHHHHHHHccccCCCcchhhHHHHHHHHHHhChHHHHHHHHHHHh--cCCCCCCCCCCCCCHHHHHHHHHHHhhhh-hh
Q psy6178 821 ALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTIS--QLPKNTPAGMNAATPEQLIEFHSQVTRSE-SA 897 (912)
Q Consensus 821 ~lv~~ll~~~~~~~~~~~~~~~a~vL~~l~~~~~~~~~~wl~~~l~--~~p~~~~~~~~~~t~~~k~~f~~~l~~~~-~~ 897 (912)
.|+..++.++.++.|++.+++++++|+.++.++|..+.+|+.+.+. .+|.. ++++++|++|++++++.+ +.
T Consensus 864 ~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~l~~~l~~~~~p~~------~~~~~~~~~f~~~l~~~~~~~ 937 (963)
T 2x19_B 864 MLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEALQPPGFPSA------RLSPEQKDTFSQQILRERVNK 937 (963)
T ss_dssp HHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHTCSTTSSCT------TCCHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChHHHHHHHHHHhcccCCCCC------cCCHHHHHHHHHHHHHHHcCc
Confidence 9999999999999999999999999999999999999999999985 68876 799999999999999887 77
Q ss_pred hhHHHHHHHHHhhcC
Q psy6178 898 YDVGQALKELSRLYR 912 (912)
Q Consensus 898 ~~~~~~~~~F~~~cr 912 (912)
|+||+.++||+..||
T Consensus 938 ~~f~~~l~~F~~~~r 952 (963)
T 2x19_B 938 RRVKEMVKEFTLLCR 952 (963)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999997
No 3
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=9.8e-87 Score=812.76 Aligned_cols=851 Identities=14% Similarity=0.147 Sum_probs=653.5
Q ss_pred CCccHHHHHHHHHHhccCC-ChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCc
Q psy6178 3 SQPSLDTVYAVVHTLYLNP-NKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPS 81 (912)
Q Consensus 3 ~~~~~~~v~~al~~l~~~~-~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~ 81 (912)
||.++++|++||+..|+|+ |++.|++|++||++||++|++|++|..+|..++..++++||||+++|+++|+ .+|+
T Consensus 1 ~~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~ 76 (980)
T 3ibv_A 1 GPMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNN 76 (980)
T ss_dssp --CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCT
T ss_pred CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCCh
Confidence 4677999999997666654 8999999999999999999999999999988541248999999999999999 6899
Q ss_pred c----cHHHHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhc-c-CcchHHHHHHHHhccc-c--hHHHHHHHHhhh
Q psy6178 82 E----SHVSLRDSLIEHLCRTND-TSGKNIITQLALALADLALQM-S-AWEKPVVYIIEKLSHK-G--SILALLEVLTVL 151 (912)
Q Consensus 82 ~----~~~~lk~~Ll~~l~~~~~-~~~~~v~~kl~~~la~l~~~~-~-~W~~~~~~l~~~~~~~-~--~~~~~L~iL~~l 151 (912)
+ ++..||+.|++++.+... ..|++|++|+|.+++.++.+. | .||++++++++.++++ . ....+|++|..|
T Consensus 77 e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i 156 (980)
T 3ibv_A 77 ESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSI 156 (980)
T ss_dssp TTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHh
Confidence 9 999999999999988542 235699999999999999985 4 8999999999999764 2 355677777777
Q ss_pred hhhcccccC--C---hhhHHHHHHHHHhh-----hhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhc-------------
Q psy6178 152 PEEVNVLKL--G---KNRREEFEEELKAA-----GPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS------------- 208 (912)
Q Consensus 152 ~ee~~~~~~--~---~~~r~~~~~~l~~~-----~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi------------- 208 (912)
+||+.+..+ + ..|++++++.++.+ .+.++.++.++.+. .+.+++..+++|+.+|+
T Consensus 157 ~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~--~~~~l~~~~L~~l~s~i~wi~~~~i~~~~l 234 (980)
T 3ibv_A 157 GDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA--KNYGTVGLCLQVYAQWVSWININLIVNEPC 234 (980)
T ss_dssp HHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTTTSCHHHHHCHHH
T ss_pred HHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHhhcCHHhhhcchH
Confidence 899987332 2 24667889999887 56666666666543 25678899999999988
Q ss_pred ---------CCcchHHHHHHHHhhchhhhccCCchHHHHHHHHHHhchHHHHHHHhc-CCChHHHhhHHHHHHHHHHHHH
Q psy6178 209 ---------SGSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVA-HEDLEKCMNYCKLFTELAESLL 278 (912)
Q Consensus 209 ---------~~~l~~~a~~~l~~~l~~~~~~~~~~~l~~~l~~~v~~l~~~~~~~~~-~~d~~~~~~~~~l~~~l~~~~~ 278 (912)
.++++++|++|+++++++.++++++.+++..+ ++.+.+..... ++|.|+.++++++++++|+.+.
T Consensus 235 l~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l-----~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~ 309 (980)
T 3ibv_A 235 MNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLNIL-----NLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELV 309 (980)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH-----HHHHHHCC-----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHHHHHHH-----hHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999987765555555542 34444433222 6889999999999999999999
Q ss_pred HHHHhcccC-C-----Ccchh-hHHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCc-hhhhhcchHHHH
Q psy6178 279 DRIVNESMT-K-----QQPFS-IKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKND-DSLTVLFKPHVE 350 (912)
Q Consensus 279 ~~l~~~~~~-~-----~~~~~-~~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~-~~~~~~~~~~~~ 350 (912)
.. .+.+.. + ..... ..+++++|.+++|++.+ |+..+++||..+.+.+.+... ....+.++|++.
T Consensus 310 ~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~de-------Vs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~ 381 (980)
T 3ibv_A 310 AI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDE-------TSTAVFPFLSDLLVSLRKESSSKELSASLKEFLK 381 (980)
T ss_dssp HH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHH-------HHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchh-------HHHHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence 88 543300 0 00012 25789999999998777 999999999999876553221 123567889999
Q ss_pred HHHHHHHhhcCCCCCCCCCc----cccchHHHHHhHhHHHHHhhhHhcCcHHHHH----HHHHHhhc-----CCCCccch
Q psy6178 351 RLIGALCKHCQLEPDLEGLL----EEDHDFYDFRLKVSELVKDVVFIVGSSTCFR----HMFNSLHE-----NNVMWEQT 417 (912)
Q Consensus 351 ~ll~~l~~k~~~p~d~~~~~----ee~~~f~~~R~~~~d~l~~~~~~l~~~~~l~----~l~~~l~~-----~~~~w~~~ 417 (912)
+|++++++||+||+|++|++ ||+++|.+||++++ ++.+++.++|++.++. .+.+.+.+ ++.+|+++
T Consensus 382 ~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~ 460 (980)
T 3ibv_A 382 SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLI 460 (980)
T ss_dssp HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHH
Confidence 99999999999999877654 56789999999999 8999999999987887 44433332 13579999
Q ss_pred hHHHHHHHHhhcccCC------CCcCcHHHHHHHHhcC-----CCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy6178 418 EAALYIMQSVAKNVLP------EENDVVPKVVEAILHL-----PPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFL 486 (912)
Q Consensus 418 Ea~L~~l~~iae~~~~------~~~~~l~~l~~~l~~~-----~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l 486 (912)
||+||+++++||++.. +.++.++++++++.++ +.++||.||.++|+++|||++|+..||++++++|+++
T Consensus 461 EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~l 540 (980)
T 3ibv_A 461 EFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYF 540 (980)
T ss_dssp HHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 9999999999999975 2345677777765543 3357999999999999999999999999999999999
Q ss_pred HH--hcCCC--ChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCC--------------------ChHHHHHHH
Q psy6178 487 LH--CLQQP--GLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSI--------------------SNDAAIGLL 542 (912)
Q Consensus 487 ~~--~l~~~--~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~--------------------~~~~~~~l~ 542 (912)
++ |+++| +|+.+||+||.+||++|+.+|.||++.+++.+..+..... ..+++..++
T Consensus 541 l~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~ 620 (980)
T 3ibv_A 541 VGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLF 620 (980)
T ss_dssp TSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHH
T ss_pred hccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHH
Confidence 99 99876 4999999999999999999999999999999987654211 123689999
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHH
Q psy6178 543 KGVAIIVSDM--PQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVIT 620 (912)
Q Consensus 543 eai~~vi~~~--p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~ 620 (912)
||+|.++++. |.++...++..++.|++++++++++.....+.. ...+++.+..+|.+.|++.... ...+|+..++.
T Consensus 621 eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~-~~~i~~~i~al~~lakgf~~~~-~~~~p~~~~f~ 698 (980)
T 3ibv_A 621 ETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALEN-IISVYCSLMAIGNFAKGFPARG-SEEVAWLASFN 698 (980)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CH-HHHHHHHHHHHHHHHHTSCSCC--CCCSHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccH-HHHHHHHHHHHHHHhccCCccc-CCCCcHHHHHH
Confidence 9999999775 567899999999999999999999765322111 1144566778888888876542 23567889999
Q ss_pred hHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCCCcchHHhHHHHHHHhcCccchHH
Q psy6178 621 ELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSG 700 (912)
Q Consensus 621 ~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~~~~~~~ 700 (912)
++|+++..+++.|+.+..|+|++|.++++++.++|.++.|++|++++.++..|+.+++++||+++++++++||. ++.+.
T Consensus 699 ~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~-~~~~~ 777 (980)
T 3ibv_A 699 KASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKD-NMMEI 777 (980)
T ss_dssp HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTT-TSHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 69999
Q ss_pred HHHHHHHHhHHHHHhhcCcCC----CCCCCchHHHHHHHHHHHHHhC-CccccCc---hhhHHHHHHHHH-hcccCCchh
Q psy6178 701 LLDMVQAFLPPTYAILQEEDG----LKNHPDTVDDLFRLCTRFLQRA-PIAFLTS---SFISSVMQCGIL-ATHLDHREA 771 (912)
Q Consensus 701 l~~l~~~l~~~~~~~l~~~~~----~~~~pd~~~~~f~l~~~~l~~~-p~~~l~~---~~l~~i~~~~~~-~l~~~~~~~ 771 (912)
+.+++.+++.++|.+|+++.. +++..|+.++||.|+..++.+. +..+++. +.++.++...+. +....|+.+
T Consensus 778 l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~ 857 (980)
T 3ibv_A 778 TNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPAT 857 (980)
T ss_dssp HHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHH
Confidence 999999999999999987411 2345778999999999999976 6666654 235544443332 234688999
Q ss_pred HHHHHHHHHHHhhccCCCCcccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccccCCC------------cch
Q psy6178 772 NSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHT------------YMM 839 (912)
Q Consensus 772 ~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~~~~~------------~~~ 839 (912)
.|.|+.++.+++..|++.+ ..++++++ ++. +..+|+.+|. -.+
T Consensus 858 ~K~a~~~l~~~v~~~~~~~---------~~~gf~~f--------------~~~--~~~~~f~~p~~~~f~~~Daq~~~~~ 912 (980)
T 3ibv_A 858 QKSSIALVSKMVSLWGGKD---------GIAGFENF--------------TLS--LTPLCFEMPVNPNFNTRDGQSLVVL 912 (980)
T ss_dssp HHHHHHHHHHHHHC----------------CCHHHH--------------HHH--HHHHHHHGGGC----------CHHH
T ss_pred HHHHHHHHHHHHHHHCCCC---------cchHHHHH--------------HHH--HHHHHHHhhcCCCCChhhHHHHHHH
Confidence 9999999999999886543 01222222 122 3344444442 257
Q ss_pred hhHHHHHHHHHHhChHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q psy6178 840 ADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRL 910 (912)
Q Consensus 840 ~~~a~vL~~l~~~~~~~~~~wl~~~l~~~p~~~~~~~~~~t~~~k~~f~~~l~~~~~~~~~~~~~~~F~~~ 910 (912)
.++|.+++.+..+.|+++.++|.+. .+|+. +++++..++|++++ ...+.|.||+.+++|...
T Consensus 913 ~e~~~~~k~~~~~~g~~~~~~l~~~--~lp~~------~~~~~~~~~~~~~l-~~~~~k~f~~~~~~~~~~ 974 (980)
T 3ibv_A 913 GELAGLQKIILEKLGDIYKSYLVTV--YFPTV------NFPDVMASEYLQAL-SNLDSRSFKQFFQKFIQA 974 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--TTTC----------CCHHHHHHHC-----------------CHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHh--cCCcC------CCCHHHHHHHHHHH-hccchhhHHHHHHHHHHH
Confidence 8999999999999999999998776 67876 89999999999999 566789999999999764
No 4
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=3.7e-83 Score=780.51 Aligned_cols=852 Identities=14% Similarity=0.196 Sum_probs=694.6
Q ss_pred CccHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCccc
Q psy6178 4 QPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSES 83 (912)
Q Consensus 4 ~~~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~ 83 (912)
|.+++++++++.++|+|++ +.|++|++||+++|++|++|.+|..+|..+.+ +++|||||++|+++|+++|..+|+++
T Consensus 12 ~~dv~~Le~av~~ly~p~~-~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~--~~vR~faa~~Lk~~I~~~W~~L~~e~ 88 (1023)
T 4hat_C 12 DLDIALLDQVVSTFYQGSG-VQQKQAQEILTKFQDNPDAWQKADQILQFSTN--PQSKFIALSILDKLITRKWKLLPNDH 88 (1023)
T ss_dssp CCCHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCC--HHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred CCCHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHcCccHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 5679999999999999765 49999999999999999999999999987665 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCC-----ChhHHHHHHHHHHHHHhhc-c-CcchHHHHHHHHhccc-chHHHHHHHHhhhhhhc
Q psy6178 84 HVSLRDSLIEHLCRTNDTS-----GKNIITQLALALADLALQM-S-AWEKPVVYIIEKLSHK-GSILALLEVLTVLPEEV 155 (912)
Q Consensus 84 ~~~lk~~Ll~~l~~~~~~~-----~~~v~~kl~~~la~l~~~~-~-~W~~~~~~l~~~~~~~-~~~~~~L~iL~~l~ee~ 155 (912)
+..||+.|++++.++..++ ++++++|+|.+++.++.+. | .||++++++++.++++ ...+.+|.+|+.|+||+
T Consensus 89 ~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV 168 (1023)
T 4hat_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEV 168 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999998764321 3689999999999999975 4 8999999999999876 66889999999999998
Q ss_pred cc---ccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhc-----------------------C
Q psy6178 156 NV---LKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS-----------------------S 209 (912)
Q Consensus 156 ~~---~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi-----------------------~ 209 (912)
.+ .+++..||..+++.|+.+++.+++++.++++... +.++...+++|+.+|+ +
T Consensus 169 ~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~-~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~ 247 (1023)
T 4hat_C 169 FDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA-SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTS 247 (1023)
T ss_dssp HTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHS
T ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCC
Confidence 76 3456788999999999999999999999998753 4567777888777766 3
Q ss_pred CcchHHHHHHHHhhchhhhccC--CchHHHHHHHHHH------------hchHHHHHHHhcCCChHHHhhHHHHHHHHHH
Q psy6178 210 GSLHDAATDCVSALLPILEYNN--NFDAVNLNVFTCI------------LSLEEQFHMAVAHEDLEKCMNYCKLFTELAE 275 (912)
Q Consensus 210 ~~l~~~a~~~l~~~l~~~~~~~--~~~~l~~~l~~~v------------~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~ 275 (912)
++++++|++|+++++++....+ ...+.+..+++.+ .++.+.+.. ..++|.++.+++|++++++|+
T Consensus 248 ~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~-~~~~D~e~~~~l~~l~~~~~e 326 (1023)
T 4hat_C 248 PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYAN-ANGNDQSFLQDLAMFLTTYLA 326 (1023)
T ss_dssp HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHH-TCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhc-cccchHHHHHHHHHHHHHHHH
Confidence 5567899999999998432111 1223333333333 234455544 244577889999999999999
Q ss_pred HHHHHHHhcccCCCcchhh-HHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHH
Q psy6178 276 SLLDRIVNESMTKQQPFSI-KALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIG 354 (912)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~~-~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~ 354 (912)
++...+.+.+ +..+.. ..++.|+.++++++.+ +...+|+||+.+.+.+... +.....|+|++.+|+.
T Consensus 327 ~~~~li~~~~---~~~~~l~~~l~~Ll~~~~~~d~e-------i~~~tl~FW~~L~~~l~~e--~~~~~~~~~~~~~L~~ 394 (1023)
T 4hat_C 327 RNRALLESDE---SLRELLLNAHQYLIQLSKIEERE-------LFKTTLDYWHNLVADLFYE--PLKKHIYEEICSQLRL 394 (1023)
T ss_dssp HHGGGGTSCG---GGHHHHHHHHHHHHHHTTSSCHH-------HHHHHHHHHHHHHHHHTTS--TTTGGGGHHHHHHHHH
T ss_pred HHHHHHhCCc---chhHHHHHHHHHHHHhhCCCcHH-------HHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHH
Confidence 9998776543 111111 2366889999998888 9999999999999987652 2346789999999999
Q ss_pred HHHhhcCCCCC------C--CC------CccccchHHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhc----CCCCccc
Q psy6178 355 ALCKHCQLEPD------L--EG------LLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHE----NNVMWEQ 416 (912)
Q Consensus 355 ~l~~k~~~p~d------~--~~------~~ee~~~f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~----~~~~w~~ 416 (912)
++++||+||++ + +| +.|+.+.|+.+| |++.+++.+.|++ ++..+.+.+.+ ++.+|+.
T Consensus 395 vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~~-~~~~~~~~l~~~l~~~~~~W~~ 469 (1023)
T 4hat_C 395 VIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVID-TEEIMISKLARQIDGSEWSWHN 469 (1023)
T ss_dssp HHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHHH-HHHHHHHHHHHHHSSTTCCHHH
T ss_pred HHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCHHH-HHHHHHHHHHHHhcCCCCCHHH
Confidence 99999999983 2 12 334557788887 8889999988874 77777777653 3578999
Q ss_pred hhHHHHHHHHhhcccCCC-CcCcHHHHHHHHhcCCC-----CchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhc
Q psy6178 417 TEAALYIMQSVAKNVLPE-ENDVVPKVVEAILHLPP-----STHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCL 490 (912)
Q Consensus 417 ~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~~~~-----~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l 490 (912)
+||++|++|+|++++.++ ++++++++++.|++++. ++++.++.++|+++|+|++|+..||++|++++++++.++
T Consensus 470 ~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l 549 (1023)
T 4hat_C 470 INTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFM 549 (1023)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 999999999999998765 56889999998877764 245678889999999999999999999999999999999
Q ss_pred CC--CChHHHHHHHHHHHHHHhhhhhh--------hcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHH-HHH
Q psy6178 491 QQ--PGLASVTANALQSISTACCTHMV--------GHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQ-ISE 559 (912)
Q Consensus 491 ~~--~~v~~~A~~al~~l~~~~~~~L~--------~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~-~~~ 559 (912)
++ |+|+.+||.||.+||++|+.++. ||++.+++.+...... ++.+.+..+++|+|.+++++|++. ...
T Consensus 550 ~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~-l~~~~~~~lyeai~~vi~~~~~~~~~~~ 628 (1023)
T 4hat_C 550 HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD-LQPQQVHTFYKACGIIISEERSVAERNR 628 (1023)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT-SCHHHHHHHHHHHHHHHTTCCSHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhCCCHhhHHH
Confidence 75 46999999999999999999884 7999999988876653 677888999999999999999765 888
Q ss_pred HHHHHHHHhHHHHHHHHHhcC-CCCC----CCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhc
Q psy6178 560 ALKQLCLVQVKPLCELIEKQI-KPEK----NKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQ 634 (912)
Q Consensus 560 ~l~~l~~p~~~~l~~~~~~~~-~~~~----~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 634 (912)
++..++.|..++|++++++.. +|+. +....+...+++++.++++++ +++.+.++.+||.+..+...+.
T Consensus 629 ~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg-------~~f~~~~~~i~~~~l~~y~~~s 701 (1023)
T 4hat_C 629 LLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG-------ADFYPQLGHIYYNMLQLYRAVS 701 (1023)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHG-------GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhc-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986431 1221 011234456778888888877 4788999999999888776653
Q ss_pred cch--------hH-----HHHHHHHHHHHHHHh-----chh------hHHhHHHHHHHHHHHHhcC----CCcchHHhHH
Q psy6178 635 QDA--------RV-----MEHSSRCLRYAIRCV-----GKD------FAHLLEPLVKQIVVLYSKH----PHSSFLYLGS 686 (912)
Q Consensus 635 ~~~--------~v-----~e~~~~~~~~~~~~l-----~~~------~~p~l~~l~~~l~~~~~~~----~~~~~L~~~~ 686 (912)
... .. ..+.++++|+.+-.+ +.. ...++||+++.++..|.++ +.+++|++.+
T Consensus 702 ~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s 781 (1023)
T 4hat_C 702 SMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMT 781 (1023)
T ss_dssp HHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHH
Confidence 211 01 224566665443221 111 3558899999999999887 4599999999
Q ss_pred HHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccC--chhhHHHHHHHHHhc
Q psy6178 687 ILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLT--SSFISSVMQCGILAT 764 (912)
Q Consensus 687 ~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~--~~~l~~i~~~~~~~l 764 (912)
.+++++|. .+.+.+..+++.++..|++++++ ++.++||.+.+||+|+.+++++||..++. ++.+..+++|+++|+
T Consensus 782 ~iv~~~~~-~~~~~~~~il~~vf~~Tl~mi~~--~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~ 858 (1023)
T 4hat_C 782 TVVEKVGH-MIPQGVILILQSVFECTLDMINK--DFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAF 858 (1023)
T ss_dssp HHHHHHGG-GCHHHHHHHHHHHHHHHHHHHSS--CSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hhhhhhHHHHHHHHHHHHHHHhc--ccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHc
Confidence 99999997 78899999999999999999995 89999999999999999999999998875 458999999999999
Q ss_pred ccCCchhHHHHHHHHHHHhhccCCCCcccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccccCCCcchhhHHH
Q psy6178 765 HLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVAD 844 (912)
Q Consensus 765 ~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~~~~~~~~~~~a~ 844 (912)
+..|+++..++++|+.+++....... ..+..+++.++++..++..+|..+....+.+.+..-+.
T Consensus 859 ~h~~r~~~~~~l~~~~~ll~~~~~~~----------------~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~ 922 (1023)
T 4hat_C 859 KHNNRDVEVNGLQIALDLVKNIERMG----------------NVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQAL 922 (1023)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHC----------------SSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhcC----------------ChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHH
Confidence 99999999999999999997654321 02367888999999999999999999999999999999
Q ss_pred HHHHHHHhC---------------------hHHHHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHHHHHhhhh-hhhhHH
Q psy6178 845 VLYELISVD---------------------RQVSNQWLQDTIS-QLPKNTPAGMNAATPEQLIEFHSQVTRSE-SAYDVG 901 (912)
Q Consensus 845 vL~~l~~~~---------------------~~~~~~wl~~~l~-~~p~~~~~~~~~~t~~~k~~f~~~l~~~~-~~~~~~ 901 (912)
+|..|+..- ...+++|+.+.|. .|| ++|+++...|++.+++.. +..+||
T Consensus 923 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp--------~~~~~qi~~fv~~l~~~~~~~~~f~ 994 (1023)
T 4hat_C 923 LLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFP--------HLTSEQIASFLSALTKQCKDLVVFK 994 (1023)
T ss_dssp HHHHHHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCT--------TSCHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHcCCcccccCCccccCCCCchHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHccCCHHHHH
Confidence 998887731 2347899999888 799 689999999999999885 457999
Q ss_pred HHHHHHHhhcC
Q psy6178 902 QALKELSRLYR 912 (912)
Q Consensus 902 ~~~~~F~~~cr 912 (912)
.++|||....|
T Consensus 995 ~~lrdfli~~k 1005 (1023)
T 4hat_C 995 GTLRDFLVQIK 1005 (1023)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHhHHhH
Confidence 99999997654
No 5
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=3e-81 Score=756.77 Aligned_cols=854 Identities=13% Similarity=0.221 Sum_probs=682.2
Q ss_pred CccHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCccc
Q psy6178 4 QPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSES 83 (912)
Q Consensus 4 ~~~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~ 83 (912)
+.+++.+++++.++|+| ++++|++|++||++||++|++|..|..+|..+.+ +++||||+++|+++|+++|..+|+++
T Consensus 24 ~~Dv~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~--~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 24 KLDINLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQN--MNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp CCSHHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCS--HHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred CCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 46899999999999986 7889999999999999999999999999988665 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccC-----CChhHHHHHHHHHHHHHhhc-c-CcchHHHHHHHHhccc-chHHHHHHHHhhhhhhc
Q psy6178 84 HVSLRDSLIEHLCRTNDT-----SGKNIITQLALALADLALQM-S-AWEKPVVYIIEKLSHK-GSILALLEVLTVLPEEV 155 (912)
Q Consensus 84 ~~~lk~~Ll~~l~~~~~~-----~~~~v~~kl~~~la~l~~~~-~-~W~~~~~~l~~~~~~~-~~~~~~L~iL~~l~ee~ 155 (912)
+..||+.|++++.++..+ .++.+++|+|.+++.++.+. | .||++++++++.++++ ..++.+|.+|+.|+||+
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV 180 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEV 180 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999875432 12578899999999999974 5 7999999999998765 56888999999999998
Q ss_pred cc---ccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHH---HHHHHHHHhhc--------------------C
Q psy6178 156 NV---LKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQ---TKVLKCFTSWS--------------------S 209 (912)
Q Consensus 156 ~~---~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~---~~~l~~l~sWi--------------------~ 209 (912)
.+ .+++..||.++++.|+..++.+++++..+++... +.++. ..+++|+.+|| .
T Consensus 181 ~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~-~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~~ 259 (1073)
T 3gjx_A 181 FDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQ-NAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLNV 259 (1073)
T ss_dssp TTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSSS
T ss_pred HhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcCC
Confidence 76 3456788999999999999999999999998754 34443 46777778888 3
Q ss_pred CcchHHHHHHHHhhchhhhccCCchHHHHHHHHHHhc-----------hHHHHHHHhcCCChHHHhhHHHHHHHHHHHHH
Q psy6178 210 GSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILS-----------LEEQFHMAVAHEDLEKCMNYCKLFTELAESLL 278 (912)
Q Consensus 210 ~~l~~~a~~~l~~~l~~~~~~~~~~~l~~~l~~~v~~-----------l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~ 278 (912)
++++++|++|+++++++. .+++.+.+..++..++. +.+.+..+ ..+|.++..++|++|++++++|.
T Consensus 260 ~~~r~aA~dcL~eIv~k~--~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~-~~~d~e~~~~l~~~f~~~~e~~~ 336 (1073)
T 3gjx_A 260 PMFRNVSLKCLTEIAGVS--VSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNG-KDDEQNFIQNLSLFLCTFLKEHG 336 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSC--SGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTC-CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhcc-chhhHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999873 22334555555544442 22333222 44566899999999999999999
Q ss_pred HHHHhcccCCCcchhhHHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCc-----------------hhh
Q psy6178 279 DRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKND-----------------DSL 341 (912)
Q Consensus 279 ~~l~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~-----------------~~~ 341 (912)
..+.+.+ +........+++++.|++++++| +...+|+||+.+.+.+....+ ...
T Consensus 337 ~lIe~~p--~~~~~l~~~l~~ll~~s~~~d~e-------i~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~ 407 (1073)
T 3gjx_A 337 QLLEKRL--NLREALMEALHYMLLVSEVEETE-------IFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR 407 (1073)
T ss_dssp HHHHHCG--GGHHHHHHHHHHHHHHTTCSCHH-------HHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH
T ss_pred HHHhcCc--cchHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH
Confidence 9998765 11111234578899999999998 999999999999998774321 124
Q ss_pred hhcchHHHHHHHHHHHhhcCCCCCCC-CCccccchHHHHHhHh---------HHHHHhhhHhcCcHHHHHHHHHHhhc--
Q psy6178 342 TVLFKPHVERLIGALCKHCQLEPDLE-GLLEEDHDFYDFRLKV---------SELVKDVVFIVGSSTCFRHMFNSLHE-- 409 (912)
Q Consensus 342 ~~~~~~~~~~ll~~l~~k~~~p~d~~-~~~ee~~~f~~~R~~~---------~d~l~~~~~~l~~~~~l~~l~~~l~~-- 409 (912)
+..|+|++.+|..+++.||.+|+|.. .++|+++-|+++|++. +|++..++. ++++.++..+.+.+..
T Consensus 408 ~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~-l~~~~~~~i~~~~l~~~~ 486 (1073)
T 3gjx_A 408 RQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTH-LDYVDTEIIMTKKLQNQV 486 (1073)
T ss_dssp HHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHh
Confidence 56699999999999999999998742 1233344455555543 334433333 3445577777777753
Q ss_pred --CCCCccchhHHHHHHHHhhcccCCC-CcCcHHHHHHHHhcCCCCc-----hHHHHHHHHHHHHHHHHHHhcCcCcHHH
Q psy6178 410 --NNVMWEQTEAALYIMQSVAKNVLPE-ENDVVPKVVEAILHLPPST-----HIAVRYTSLLLLGELCEWIDKHPHTLET 481 (912)
Q Consensus 410 --~~~~w~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~~~~~~-----~~~v~~t~~~~lg~y~~~l~~~p~~l~~ 481 (912)
+..+|+.+||++|++|+||..+.++ ++++++++++.|+++|... .+.++.+.|+++|+|++|+..||++|.+
T Consensus 487 ~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~ 566 (1073)
T 3gjx_A 487 NGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT 566 (1073)
T ss_dssp TSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH
T ss_pred cCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH
Confidence 3568999999999999999877643 5689999999988877421 3456777889999999999999999999
Q ss_pred HHHHHHHhcCC--CChHHHHHHHHHHHHHHhhhhhh--------hcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhc
Q psy6178 482 ILNFLLHCLQQ--PGLASVTANALQSISTACCTHMV--------GHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSD 551 (912)
Q Consensus 482 ~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~~~L~--------~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~ 551 (912)
++++++.++++ |+|+.+||.||.+||++|+.+++ ||++.+++.+...... ++.+....+++|+|.++++
T Consensus 567 vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~-l~~~~~~~lyeav~~vi~~ 645 (1073)
T 3gjx_A 567 VVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICD-LQPQQVHTFYEAVGYMIGA 645 (1073)
T ss_dssp HHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTT-CCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHh
Confidence 99999999986 57999999999999999999874 5888888888776553 7888899999999999999
Q ss_pred CCHHH-HHHHHHHHHHHhHHHHHHHHHhcC-CCCCCC----CCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHH
Q psy6178 552 MPQDQ-ISEALKQLCLVQVKPLCELIEKQI-KPEKNK----KSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPV 625 (912)
Q Consensus 552 ~p~~~-~~~~l~~l~~p~~~~l~~~~~~~~-~~~~~~----~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (912)
+|++. ...++..++.|..++|++++++.. +++... ...+...+++.+.+..+++ +++.+.+..+||-
T Consensus 646 ~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g-------~~f~~~~~~i~~~ 718 (1073)
T 3gjx_A 646 QTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVG-------HPFVIQLGRIYLD 718 (1073)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHC-------GGGHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcc-------hhHHHHHHHHHHH
Confidence 99865 788999999999999999987532 111100 0112233444555555555 5788999999997
Q ss_pred HHHHHHhhccc-------------hhHHHHHHHHHHHHHHH-----hchh------hHHhHHHHHHHHHHHHhc----CC
Q psy6178 626 LSKTCETYQQD-------------ARVMEHSSRCLRYAIRC-----VGKD------FAHLLEPLVKQIVVLYSK----HP 677 (912)
Q Consensus 626 l~~~l~~~~~~-------------~~v~e~~~~~~~~~~~~-----l~~~------~~p~l~~l~~~l~~~~~~----~~ 677 (912)
+..+...+.+. .....+.|+++|+.+-. .+.. ...++||+++.++..|.+ .+
T Consensus 719 ~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r 798 (1073)
T 3gjx_A 719 MLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAR 798 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGC
T ss_pred HHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccc
Confidence 77766543221 11334778888754422 2322 457889999999999987 48
Q ss_pred CcchHHhHHHHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccC--chhhHH
Q psy6178 678 HSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLT--SSFISS 755 (912)
Q Consensus 678 ~~~~L~~~~~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~--~~~l~~ 755 (912)
.+++|++.+.+++++|. .+.+.+..+++.++..|+++++. ++.++||.+.+||+|+.++..+|+..+++ ++.+..
T Consensus 799 ~~evL~l~s~iv~k~~~-~~~~~~~~il~~vf~~Tl~mi~~--~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~ 875 (1073)
T 3gjx_A 799 EPEVLSTMAIIVNKLGG-HITAEIPQIFDAVFECTLNMINK--DFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKL 875 (1073)
T ss_dssp CTHHHHHHHHHHHHHGG-GTGGGHHHHHHHHHHHHHHHHSS--CSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHhC--CcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHH
Confidence 89999999999999997 77788999999999999999996 89999999999999999999999998875 567899
Q ss_pred HHHHHHHhcccCCchhHHHHHHHHHHHhhccCCCCcccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccccCC
Q psy6178 756 VMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLH 835 (912)
Q Consensus 756 i~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~~~~ 835 (912)
+++++++|++..++++..++++++.+++...... .+..+++.++++..++..+|..+....+
T Consensus 876 ~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~------------------~~~~~~F~~~~~~~~~~~i~~v~td~~h 937 (1073)
T 3gjx_A 876 VLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQE------------------EAAAQSFYQTYFCDILQHIFSVVTDTSH 937 (1073)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTC------------------HHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcC------------------hHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 9999999999999999999999999999765432 1367889999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHh-----------------ChHHHHHHHHHHH-hcCCCCCCCCCCCCCHHHHHHHHHHHhhhh-h
Q psy6178 836 TYMMADVADVLYELISV-----------------DRQVSNQWLQDTI-SQLPKNTPAGMNAATPEQLIEFHSQVTRSE-S 896 (912)
Q Consensus 836 ~~~~~~~a~vL~~l~~~-----------------~~~~~~~wl~~~l-~~~p~~~~~~~~~~t~~~k~~f~~~l~~~~-~ 896 (912)
.+.+..-+.+|..|+.. +..-+++|+.+.| +.|| ++|+++.+.|++.+++.. +
T Consensus 938 ~~~f~~q~~il~~l~~~~~~~~i~~~l~~~~~~~n~~~~~~~~~~~l~~~fp--------~~~~~qi~~fv~~l~~~~~d 1009 (1073)
T 3gjx_A 938 TAGLTMHASILAYMFNLVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFP--------HLQDAQVKLFVTGLFSLNQD 1009 (1073)
T ss_dssp GGGHHHHHHHHHHHHHHHTTTCCSCSSSCTTTTCHHHHHHHHHHHHHHHHCT--------TSCHHHHHHHHHHHHHSTTC
T ss_pred hhhhhHHHHHHHHHHHHHHcCCccccccccCCCccHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHhcCC
Confidence 99999999999888664 1224789999988 4798 689999999999999885 5
Q ss_pred hhhHHHHHHHHHhhc
Q psy6178 897 AYDVGQALKELSRLY 911 (912)
Q Consensus 897 ~~~~~~~~~~F~~~c 911 (912)
..+||.++|||...-
T Consensus 1010 ~~~f~~~lrDFli~~ 1024 (1073)
T 3gjx_A 1010 IPAFKEHLRDFLVQI 1024 (1073)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 589999999998754
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1e-74 Score=726.07 Aligned_cols=855 Identities=14% Similarity=0.204 Sum_probs=668.3
Q ss_pred CccHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCccc
Q psy6178 4 QPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSES 83 (912)
Q Consensus 4 ~~~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~ 83 (912)
+.+++++.++++++|+| +++.|++|+++|++++++|++|..|.++|..+.+ +++|||||++||++|+++|..+|+++
T Consensus 12 ~~~~~~l~~~l~~~~~p-~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~--~~vr~~aa~~Lk~~i~~~W~~l~~~~ 88 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQG-SGVQQKQAQEILTKFQDNPDAWQKADQILQFSTN--PQSKFIALSILDKLITRKWKLLPNDH 88 (1049)
T ss_dssp CCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSC--HHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred cccHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCC--HHHHHHHHHHHHHHHHhhCccCCHHH
Confidence 57899999999999986 5678999999999999999999999999988665 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCC-----ChhHHHHHHHHHHHHHhh-cc-CcchHHHHHHHHhccc-chHHHHHHHHhhhhhhc
Q psy6178 84 HVSLRDSLIEHLCRTNDTS-----GKNIITQLALALADLALQ-MS-AWEKPVVYIIEKLSHK-GSILALLEVLTVLPEEV 155 (912)
Q Consensus 84 ~~~lk~~Ll~~l~~~~~~~-----~~~v~~kl~~~la~l~~~-~~-~W~~~~~~l~~~~~~~-~~~~~~L~iL~~l~ee~ 155 (912)
+..||+.|++++.....++ ++.+++|+|.++|.++.+ ++ .||++++++++.++++ ...+..+.+|+.++||+
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~l~eev 168 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEV 168 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Confidence 9999999999998754222 258999999999999997 45 7999999999999754 45788999999999999
Q ss_pred ccc---cCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhc---C--------------------
Q psy6178 156 NVL---KLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS---S-------------------- 209 (912)
Q Consensus 156 ~~~---~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi---~-------------------- 209 (912)
.+. ..+..||.++++.++.+.+.+++++.++++... +.+++..+++|+.+|+ +
T Consensus 169 ~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~-~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~ 247 (1049)
T 3m1i_C 169 FDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS-SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTS 247 (1049)
T ss_dssp HTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHS
T ss_pred HHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCCC
Confidence 862 345667888999999999999999999998753 5678999999998765 1
Q ss_pred CcchHHHHHHHHhhchhhhccC--CchHHHHHHHHHHhc------------hHHHHHHHhcCCChHHHhhHHHHHHHHHH
Q psy6178 210 GSLHDAATDCVSALLPILEYNN--NFDAVNLNVFTCILS------------LEEQFHMAVAHEDLEKCMNYCKLFTELAE 275 (912)
Q Consensus 210 ~~l~~~a~~~l~~~l~~~~~~~--~~~~l~~~l~~~v~~------------l~~~~~~~~~~~d~~~~~~~~~l~~~l~~ 275 (912)
++++.+|++|+.+++++..+.. .....+..+++.+++ +.+.+..+ .++|.++...+|++++++++
T Consensus 248 ~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~-~~~d~~~~~~l~~~~~~~~~ 326 (1049)
T 3m1i_C 248 PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANA-NGNDQSFLQDLAMFLTTYLA 326 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHT-CTTHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccC-CcchHHHHHHHHHHHHHHHH
Confidence 3456789999999998743221 012333344444443 22333332 34566778999999999999
Q ss_pred HHHHHHHhcccCCCcchh-hHHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHH
Q psy6178 276 SLLDRIVNESMTKQQPFS-IKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIG 354 (912)
Q Consensus 276 ~~~~~l~~~~~~~~~~~~-~~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~ 354 (912)
.+...+...+ ..... ..++++++.++.+++.+ ++..+++||..+.+++.+ .......++|++.+|+.
T Consensus 327 ~~~~~~~~~~---~~~~~l~~~l~~ll~~~~~~d~~-------v~~~~lefw~~l~~~l~~--~~~~~~~~~~~l~~Lv~ 394 (1049)
T 3m1i_C 327 RNRALLESDE---SLRELLLNAHQYLIQLSKIEERE-------LFKTTLDYWHNLVADLFY--EPLKKHIYEEICSQLRL 394 (1049)
T ss_dssp HHHHHHHSCG---GGHHHHHHHHHHHHHHHTSSCHH-------HHHHHHHHHHHHHHHHHH--STTCGGGGHHHHHHHHH
T ss_pred HHHHHHcCCh---hhHHHHHHHHHHHHHHHcCCcHH-------HHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHH
Confidence 9988887632 11112 24688899998887555 999999999999986532 12345678899999999
Q ss_pred HHHhhcCCCCCCCCCc-ccc---------chHHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhc----CCCCccchhHH
Q psy6178 355 ALCKHCQLEPDLEGLL-EED---------HDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHE----NNVMWEQTEAA 420 (912)
Q Consensus 355 ~l~~k~~~p~d~~~~~-ee~---------~~f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~----~~~~w~~~Ea~ 420 (912)
+++.+|+||+|++|.+ |++ +|-..+|+.++++++.++.+.+. .++..+.+.+.+ +..+|+.+||+
T Consensus 395 ~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~-~~l~~v~~~l~~~l~~~~~~W~~~eaa 473 (1049)
T 3m1i_C 395 VIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTL 473 (1049)
T ss_dssp HHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred HHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 9999999988765422 111 12224667889999999877654 466766666653 35789999999
Q ss_pred HHHHHHhhcccCCC-CcCcHHHHHHHHhcCCC-----CchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCC-
Q psy6178 421 LYIMQSVAKNVLPE-ENDVVPKVVEAILHLPP-----STHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQP- 493 (912)
Q Consensus 421 L~~l~~iae~~~~~-~~~~l~~l~~~l~~~~~-----~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~- 493 (912)
+|+++++++++... ++.+++++++.+.+++. +++|.++.++|+++|+|++|+..||+++++++++++.+++++
T Consensus 474 l~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~ 553 (1049)
T 3m1i_C 474 SWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETH 553 (1049)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC
Confidence 99999999988654 23558888888777654 257888889999999999999999999999999999999884
Q ss_pred -ChHHHHHHHHHHHHHHhhhhhh--------hcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCH-HHHHHHHHH
Q psy6178 494 -GLASVTANALQSISTACCTHMV--------GHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQ-DQISEALKQ 563 (912)
Q Consensus 494 -~v~~~A~~al~~l~~~~~~~L~--------~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~-~~~~~~l~~ 563 (912)
+|+.+||+||.+||++|+.++. ||++.+++.+..+... ++.++...+++|+|.++++.|+ +...+++..
T Consensus 554 ~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~-~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~ 632 (1049)
T 3m1i_C 554 EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD-LQPQQVHTFYKACGIIISEERSVAERNRLLSD 632 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT-SCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5999999999999999999886 9999999999877664 6777889999999999999984 678899999
Q ss_pred HHHHhHHHHHHHHHhcC-CCCCC----CCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhh-----
Q psy6178 564 LCLVQVKPLCELIEKQI-KPEKN----KKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETY----- 633 (912)
Q Consensus 564 l~~p~~~~l~~~~~~~~-~~~~~----~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----- 633 (912)
++.|++++|.+++.+.. +++.. ....+...+.+++.+++.++.. +.+.+..+++-+..++...
T Consensus 633 l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~-------f~p~~~~i~~~~l~~~~~~~~~~~ 705 (1049)
T 3m1i_C 633 LMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGAD-------FYPQLGHIYYNMLQLYRAVSSMIS 705 (1049)
T ss_dssp HTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGG-------GHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998886431 11110 0112234466777777777642 3333333322211111110
Q ss_pred -----ccc-----h--hHHHHHHHHHHHHHH-------HhchhhHHhHHHHHHHHHHHHhcCCCcc-----hHHhHHHHH
Q psy6178 634 -----QQD-----A--RVMEHSSRCLRYAIR-------CVGKDFAHLLEPLVKQIVVLYSKHPHSS-----FLYLGSILV 689 (912)
Q Consensus 634 -----~~~-----~--~v~e~~~~~~~~~~~-------~l~~~~~p~l~~l~~~l~~~~~~~~~~~-----~L~~~~~lv 689 (912)
.+. + ...+.+...+.++++ .++..+.|++|++++.++..|++ ..++ ++++++.++
T Consensus 706 ~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~-~~~~~~~~~~l~l~~~ii 784 (1049)
T 3m1i_C 706 AQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-NVPDARDAEVLNCMTTVV 784 (1049)
T ss_dssp HHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHH-SCGGGCCTHHHHHHHHHH
T ss_pred HHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCcccccHHHHHHHHHHH
Confidence 000 0 011222222222222 23444679999999999999976 3455 999999999
Q ss_pred HHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccC-c-hhhHHHHHHHHHhcccC
Q psy6178 690 DEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLT-S-SFISSVMQCGILATHLD 767 (912)
Q Consensus 690 ~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~-~-~~l~~i~~~~~~~l~~~ 767 (912)
..+|. .+.+.+..++..+..++++++++ +++++||++++||.|+.+++++||..+++ + ..+..++++++++++.+
T Consensus 785 ~~~~~-~~~~~l~~i~~~l~~~~~~~i~~--~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~ 861 (1049)
T 3m1i_C 785 EKVGH-MIPQGVILILQSVFECTLDMINK--DFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHN 861 (1049)
T ss_dssp HHHGG-GCHHHHHHHHHHHHHHHHHHHSS--CSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHH-hhhhhHHHHHHHHHHHHHHHHhc--chhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 99995 77889999999999999999874 67889999999999999999999999874 4 45899999999999999
Q ss_pred CchhHHHHHHHHHHHhhccCCCCcccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccccCCCcchhhHHHHHH
Q psy6178 768 HREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLY 847 (912)
Q Consensus 768 ~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~~~~~~~~~~~a~vL~ 847 (912)
|+++.+++++||.+++..+.... + .+..+++..++|..++..++.++++..+++.++..+++|.
T Consensus 862 ~~~~~~~~l~~l~~l~~~~~~~~--------------~--~~~~~~f~~~~~~~l~~~~~~~l~~~~h~s~~~~~~~~l~ 925 (1049)
T 3m1i_C 862 NRDVEVNGLQIALDLVKNIERMG--------------N--VPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLM 925 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSC--------------S--CHHHHHHHHHHHHHHHHHHHHHHHSTTCGGGHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHhcC--------------C--hHHHHHHHHHHHHHHHHHHHHHHhcchHhhhHHHHHHHHH
Confidence 99999999999999998875311 0 1246677889999999999999999999999999999999
Q ss_pred HHHHh---------------------ChHHHHHHHHHHH-hcCCCCCCCCCCCCCHHHHHHHHHHHhhhhhhh-hHHHHH
Q psy6178 848 ELISV---------------------DRQVSNQWLQDTI-SQLPKNTPAGMNAATPEQLIEFHSQVTRSESAY-DVGQAL 904 (912)
Q Consensus 848 ~l~~~---------------------~~~~~~~wl~~~l-~~~p~~~~~~~~~~t~~~k~~f~~~l~~~~~~~-~~~~~~ 904 (912)
+++.. +...+++||.+.+ ..+| +++++++++|++.++..++.+ +||+++
T Consensus 926 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--------~~~~~~~~~f~~~l~~~~~~~~~f~~~~ 997 (1049)
T 3m1i_C 926 KLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFP--------HLTSEQIASFLSALTKQYKDLVVFKGTL 997 (1049)
T ss_dssp HHHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHHHHHHHHHHHCT--------TSCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhcCcccccccCccccCCCCCcHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 98862 1225789999988 4677 689999999999999887665 699999
Q ss_pred HHHHhhcC
Q psy6178 905 KELSRLYR 912 (912)
Q Consensus 905 ~~F~~~cr 912 (912)
||||..||
T Consensus 998 rdf~~~~~ 1005 (1049)
T 3m1i_C 998 RDFLVQIK 1005 (1049)
T ss_dssp HHHHHHHT
T ss_pred HHHhHhhh
Confidence 99999997
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=3.5e-59 Score=585.66 Aligned_cols=865 Identities=12% Similarity=0.127 Sum_probs=591.4
Q ss_pred ccHHHHHHHHHHhccC-CChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCccc
Q psy6178 5 PSLDTVYAVVHTLYLN-PNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSES 83 (912)
Q Consensus 5 ~~~~~v~~al~~l~~~-~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~ 83 (912)
..+++++++++++|+| +|++.|++|+++|++++++|++|..+..+|.. .+.++++||||+++|+++|+++|..+|+++
T Consensus 8 ~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~-~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~ 86 (1204)
T 3a6p_A 8 ALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAE-KTQVAIVRHFGLQILEHVVKFRWNGMSRLE 86 (1204)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTS-TTSCHHHHHHHHHHHHHHHHHSGGGSCHHH
T ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 4577899999999987 47888999999999999999999988887762 223489999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc-C--CChhHHHHHHHHHHHHHhhc-c-CcchHHHHHHHHhccc-chHHHHHHHHhhhhhhccc
Q psy6178 84 HVSLRDSLIEHLCRTND-T--SGKNIITQLALALADLALQM-S-AWEKPVVYIIEKLSHK-GSILALLEVLTVLPEEVNV 157 (912)
Q Consensus 84 ~~~lk~~Ll~~l~~~~~-~--~~~~v~~kl~~~la~l~~~~-~-~W~~~~~~l~~~~~~~-~~~~~~L~iL~~l~ee~~~ 157 (912)
+..||+.+++++.+... . .++.|++|+|.+++.++.+. | .||++++++++.++++ ...+..+.+|..|+||+.+
T Consensus 87 k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 87 KVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999887432 1 34699999999999999974 5 7999999999998766 5678899999999999766
Q ss_pred -ccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcC-----------------CCChHHHHHHHHHHHhhc-----------
Q psy6178 158 -LKLGKNRREEFEEELKAAGPIVIEFLKTCQANC-----------------GDNVSLQTKVLKCFTSWS----------- 208 (912)
Q Consensus 158 -~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~-----------------~~~~~~~~~~l~~l~sWi----------- 208 (912)
......||+.+++.++.+++.++.++.++++.. ..+..++..+++|+.+|+
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~ 246 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAE 246 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhc
Confidence 233457788899999999999999888877641 012357788999998665
Q ss_pred -------------CCcchHHHHHHHHhhchhhhccCCchHHHHHHHHHHhchHHHHHHHh-------cCCChHHHhhHHH
Q psy6178 209 -------------SGSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAV-------AHEDLEKCMNYCK 268 (912)
Q Consensus 209 -------------~~~l~~~a~~~l~~~l~~~~~~~~~~~l~~~l~~~v~~l~~~~~~~~-------~~~d~~~~~~~~~ 268 (912)
+++++.+|++|+++++++.+..+++.+++..+.+.. +...+..+. .++|.++.+.+|+
T Consensus 247 ~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~--l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ 324 (1204)
T 3a6p_A 247 NCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVA--MHYILSAAQTADGGGLVEKHYVFLKRLCQ 324 (1204)
T ss_dssp TSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHH--HHHHHHHHHTCCCCSCCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHH--HHHHHHHhhcCCCCCCccHHHHHHHHHHH
Confidence 245678999999999987654332233332211110 112222221 2335678999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcchHH
Q psy6178 269 LFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPH 348 (912)
Q Consensus 269 l~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~ 348 (912)
+++++|+.+...+.+............++++++.++.|++.+ ++..+++||+.+.+.... ...+.+.++
T Consensus 325 ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~-------vs~~~l~fW~~ll~~~~~----~~~~~~~~~ 393 (1204)
T 3a6p_A 325 VLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQF-------LRSSTQMTWGALFRHEIL----SRDPLLLAI 393 (1204)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHH-------HHHHHHHHHHHHHSCTTT----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHH-------hHHHHHHHHHHHHhcccc----cccHHHHHH
Confidence 999999987766654210001112235899999999998777 999999999988765321 112457899
Q ss_pred HHHHHHHH---HhhcCCCCCCC-----CC-----c-cc-cchHHHHHhHhHHHHHhhhHhcCcHHHH----HHHHHHhhc
Q psy6178 349 VERLIGAL---CKHCQLEPDLE-----GL-----L-EE-DHDFYDFRLKVSELVKDVVFIVGSSTCF----RHMFNSLHE 409 (912)
Q Consensus 349 ~~~ll~~l---~~k~~~p~d~~-----~~-----~-ee-~~~f~~~R~~~~d~l~~~~~~l~~~~~l----~~l~~~l~~ 409 (912)
+.+|++++ +.||+||++++ |. + +| .++|.+||++++|++++++.+.+.. .+ +.+.+.+.+
T Consensus 394 l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~-~l~~v~~~l~~~l~~ 472 (1204)
T 3a6p_A 394 IPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKT-SFQMAGEWLKYQLST 472 (1204)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHhh
Confidence 99999999 89999987543 11 1 12 2578999999999999999887543 33 333333332
Q ss_pred -----------------------CCCCccchhHHHHHHHHhhcccCC-----CC-cCcHHHHHHHHhcCCCCchHHHHHH
Q psy6178 410 -----------------------NNVMWEQTEAALYIMQSVAKNVLP-----EE-NDVVPKVVEAILHLPPSTHIAVRYT 460 (912)
Q Consensus 410 -----------------------~~~~w~~~Ea~L~~l~~iae~~~~-----~~-~~~l~~l~~~l~~~~~~~~~~v~~t 460 (912)
.+.+|...||..+.+.++++++.. +. +..++++++.+++++. .+|.++.+
T Consensus 473 ~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~-~~p~l~~~ 551 (1204)
T 3a6p_A 473 FLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDT-KDPLILSC 551 (1204)
T ss_dssp C-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCC-SCHHHHHH
T ss_pred hhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCC-CChHHHHH
Confidence 023588889999999999988721 11 1346788888777643 48899999
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCC--------------CChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHH
Q psy6178 461 SLLLLGELCEWIDKHPHTLETILNFLLHCLQQ--------------PGLASVTANALQSISTACCTHMVGHFNGLLQIIQ 526 (912)
Q Consensus 461 ~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~--------------~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~ 526 (912)
.+.++|+|++|+..||++++++|++++.++.+ ++++.+||.+|.+||++|+..|.||+++|.+.+.
T Consensus 552 ~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~ 631 (1204)
T 3a6p_A 552 VLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVK 631 (1204)
T ss_dssp HHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988755 1488999999999999999999999999999998
Q ss_pred Hhhh-cC-CChHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhHHHHHH-----HHHhcC---------CCC------
Q psy6178 527 CLDT-LS-ISNDAAIGLLKGVAIIVSDMPQ-DQISEALKQLCLVQVKPLCE-----LIEKQI---------KPE------ 583 (912)
Q Consensus 527 ~l~~-~~-~~~~~~~~l~eai~~vi~~~p~-~~~~~~l~~l~~p~~~~l~~-----~~~~~~---------~~~------ 583 (912)
.+.+ .. ++.+++..+++|++.+...+++ ++...++..++.|++++|.. .++... .+.
T Consensus 632 ~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~~~s~~~~f~~~~G~~~~~~~~~~~ 711 (1204)
T 3a6p_A 632 QLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGLE 711 (1204)
T ss_dssp HHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHHHHHHCHHHHHHHHTSSCC--CTTCC
T ss_pred HHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHHHhhcCHHHHHHHhCCCCCccccccc
Confidence 7543 44 7788899999999999666555 55677799999999998863 332210 010
Q ss_pred -C-C-CCCChHHHHHHHHHHhhhcC------------------CCc-CCCCCChHHHHHhHhHHHHHHHHhhc--cchhH
Q psy6178 584 -K-N-KKSDPVIWLDRLAAIFKHTS------------------PRI-MSEPHPCQGVITELWPVLSKTCETYQ--QDARV 639 (912)
Q Consensus 584 -~-~-~~~~~~~~l~~l~~~~~~l~------------------~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~v 639 (912)
. + .+..+...+..+....+-.+ +.. +...+|+.+.+..+||.+.+++..++ .++++
T Consensus 712 d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~~~~~~p~~~~p~~~~i~~ilP~ll~Ll~~~~~l~~p~~ 791 (1204)
T 3a6p_A 712 DPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKLLDNLLALIRTHNTLYAPEM 791 (1204)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEECSSCCEEECCTTHHHHHHHHHHHHHHHHHHHHTTSHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceeccCCCCCccccCchHHHHHHHhHHHHHHHHHHHHhcCcHh
Confidence 0 0 01111222333333333221 000 02247889999999999999999876 78999
Q ss_pred HHHHH-------------HHHHHHHHHhchhh--HHhHHHHHHHHHHHHhcCCCcchHHhHHHHHHHhcCccchHHHHHH
Q psy6178 640 MEHSS-------------RCLRYAIRCVGKDF--AHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDM 704 (912)
Q Consensus 640 ~e~~~-------------~~~~~~~~~l~~~~--~p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~~~~~~~l~~l 704 (912)
.+.++ +++..++..-..++ .|..+...+.+-..+...+.+||+.+.+.. ..+|+ .... +.++
T Consensus 792 ~~~l~~~~~~~~~~~~~er~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~re~~y~~lg~~~-~~l~~-~fy~-~~~l 868 (1204)
T 3a6p_A 792 LAKMAEPFTKALDMLDAEKSAILGLPQPLLELNDSPVFKTVLERMQRFFSTLYENCFHILGKAG-PSMQQ-DFYT-VEDL 868 (1204)
T ss_dssp HTTSCGGGTTTTSCCHHHHHHHTCCCCCCCCTTCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHCT-TTTT-STTH
T ss_pred hhhcCHHHHHHHhccHHHHHHhcCCCcccccccccCCCcCcHHHHHHHHHHHHHHHHHHHHHHh-hcccc-cccC-Ccch
Confidence 88888 66666544310111 122234556666666667788887776543 22232 1111 1111
Q ss_pred HHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccCc---hhhHHHHHHHHHhcc-----cCCchh-----
Q psy6178 705 VQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTS---SFISSVMQCGILATH-----LDHREA----- 771 (912)
Q Consensus 705 ~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~---~~l~~i~~~~~~~l~-----~~~~~~----- 771 (912)
-..++..+|..+... ....-+++++.+| ..++++||..+..+ +++..+|......++ +.++++
T Consensus 869 ~~~l~~~~f~~l~~~-~~~~l~~li~~~~---~p~i~~CP~~~~~~~l~plL~~lf~~~~~~L~~~W~~i~~~~~~~~~~ 944 (1204)
T 3a6p_A 869 ATQLLSSAFVNLNNI-PDYRLRPMLRVFV---KPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGED 944 (1204)
T ss_dssp HHHHHHHTTSSTTTS-CHHHHHHHHHHTH---HHHHHTCCGGGTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHhcchhc-cHHHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 122233333333321 1113356777766 67889999888776 677777766544444 222111
Q ss_pred --------------------------------------------------------------------------------
Q psy6178 772 -------------------------------------------------------------------------------- 771 (912)
Q Consensus 772 -------------------------------------------------------------------------------- 771 (912)
T Consensus 945 ~~~~~~~~~~E~~~e~llr~lTr~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 1024 (1204)
T 3a6p_A 945 EAADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDDEEMMATEVTPSAMAELTDLGKCLMKHEDV 1024 (1204)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHBC------------------------------CBCHHHHHHHSSHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccccccccccchhhcchHHHHHhcCHHH
Confidence
Q ss_pred HHHHHHHHHHHhhccCCCCcccCccccCCCCchH--H-HHHHHHHHHH-----HhhHHHHHHHHHHcc-ccCCCcchhhH
Q psy6178 772 NSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFD--M-RHRLMKDIVS-----KHGQALVSNLLQACV-FSLHTYMMADV 842 (912)
Q Consensus 772 ~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~-----~~g~~lv~~ll~~~~-~~~~~~~~~~~ 842 (912)
..+++.|+.+.+.|.-... .... . -...++.++. +.|..++..++.|+. ...|.+...++
T Consensus 1025 ~~~~l~~~~~~l~~~D~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~vl~~l~~~~~~~~~~~~l 1093 (1204)
T 3a6p_A 1025 CTALLITAFNSLAWKDTLS-----------CQRTTSQLCWPLLKQVLSGTLLADAVTWLFTSVLKGLQMHGQHDGCMASL 1093 (1204)
T ss_dssp HHHHHHHHHHHTTSSCHHH-----------HHHHHHHTHHHHHTTSCSSCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred HHHHHHHHHHHhcccCcHH-----------HHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 2233333333333320000 0000 0 0012222222 458899999999998 77888889999
Q ss_pred HHHHHHHHHhChHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHhhhhh----hhhHHHHHHHHHhhcC
Q psy6178 843 ADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSES----AYDVGQALKELSRLYR 912 (912)
Q Consensus 843 a~vL~~l~~~~~~~~~~wl~~~l~~~p~~~~~~~~~~t~~~k~~f~~~l~~~~~----~~~~~~~~~~F~~~cr 912 (912)
+.++..++..++..+. |++++|.++| .+++++.++|.+++....+ .|+-|..+++|...||
T Consensus 1094 ~~l~~~i~~~~~~~~~-~~~~vl~~lP--------~i~~~~~~~f~~~l~~~~~~~~~~k~qr~~~~~ll~~~~ 1158 (1204)
T 3a6p_A 1094 VHLAFQIYEALRPRYL-EIRAVMEQIP--------EIQKDSLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCI 1158 (1204)
T ss_dssp HHHHHHHHHHSTTTCS-THHHHHTTSS--------SCCHHHHHHHHHHSSCC----------------------
T ss_pred HHHHHHHHHHhCCCCc-cHHHHHHhCC--------CCCHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHhc
Confidence 9999999988887776 9999999999 5899999999999975443 5889999999988765
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.6e-38 Score=391.44 Aligned_cols=705 Identities=13% Similarity=0.145 Sum_probs=492.4
Q ss_pred CccHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCccc
Q psy6178 4 QPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSES 83 (912)
Q Consensus 4 ~~~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~ 83 (912)
+..++++.++++..++| |++.|++|+++|++++++|+.|.++..++...++.++++|++|+..||+.|+++|..++++.
T Consensus 9 ~~~~~~l~~~l~~~~s~-d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~ 87 (852)
T 4fdd_A 9 EQGLQQILQLLKESQSP-DTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV 87 (852)
T ss_dssp HHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHH
T ss_pred hhhHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHH
Confidence 46789999999998864 99999999999999999999999999999852223589999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhcc--CcchHHHHHHHHhccc--chHHHHHHHHhhhhhhccccc
Q psy6178 84 HVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS--AWEKPVVYIIEKLSHK--GSILALLEVLTVLPEEVNVLK 159 (912)
Q Consensus 84 ~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~~--~W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~ee~~~~~ 159 (912)
+..||+.+++.+.. .+ +.||++++.+++.++...+ .||++++.+++.++++ ...+..+.+|..+.++.....
T Consensus 88 ~~~ik~~ll~~l~~---~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~ 163 (852)
T 4fdd_A 88 TDFIKSECLNNIGD---SS-PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL 163 (852)
T ss_dssp HHHHHHHHHTTTTC---SS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHcC---CC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh
Confidence 99999999998753 33 4899999999999998653 7999999999999876 456778888888887765410
Q ss_pred CChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhcCCcchHHHHHHHHhhchhhhccCCchHHHHH
Q psy6178 160 LGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLN 239 (912)
Q Consensus 160 ~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi~~~l~~~a~~~l~~~l~~~~~~~~~~~l~~~ 239 (912)
. .+.+....+.++..+.+++.+. +.+++..+++|+..++ ..... .....+..
T Consensus 164 -----~---~~~~~~~~~~il~~l~~~l~~~--~~~vR~~A~~aL~~~~----------------~~~~~--~~~~~~~~ 215 (852)
T 4fdd_A 164 -----D---SDVLDRPLNIMIPKFLQFFKHS--SPKIRSHAVACVNQFI----------------ISRTQ--ALMLHIDS 215 (852)
T ss_dssp -----H---HCSSSSCHHHHHHHHTTTTTCS--SHHHHHHHHHHHHTTT----------------TTTCH--HHHTSHHH
T ss_pred -----c---hhhhcchHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHH----------------hcccH--HHHHHHHH
Confidence 0 0001112345555555555543 5678888888776433 21100 00111222
Q ss_pred HHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHhhhcCCCCcccccCccch
Q psy6178 240 VFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVA 319 (912)
Q Consensus 240 l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~e~vs 319 (912)
+++ .+.....++|.+.....++.+..+++.++..+..+. -.+++.++.+..+++.+ ++
T Consensus 216 ~l~-------~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--------~~l~~~l~~~~~~~~~~-------vr 273 (852)
T 4fdd_A 216 FIE-------NLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--------HNIVEYMLQRTQDQDEN-------VA 273 (852)
T ss_dssp HHH-------HHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--------HHHHHHHHHHHTCSSHH-------HH
T ss_pred HHH-------HHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--------HHHHHHHHHHccCCcHH-------HH
Confidence 222 222334567888888999999999998887766543 24688888888765555 99
Q ss_pred hhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCC-C-------CCccccch--HHHHHhHhHHHHHh
Q psy6178 320 SITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDL-E-------GLLEEDHD--FYDFRLKVSELVKD 389 (912)
Q Consensus 320 ~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~-~-------~~~ee~~~--f~~~R~~~~d~l~~ 389 (912)
..+++||..+.+.. .....++|++.++++.++.+|.|++++ . +|++|+++ -...|+.....+..
T Consensus 274 ~~a~e~l~~l~~~~------~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~ 347 (852)
T 4fdd_A 274 LEACEFWLTLAEQP------ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV 347 (852)
T ss_dssp HHHHHHHHHHTTST------THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcch------hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence 99999999987531 123445788899999999999886422 1 11111111 12357777778888
Q ss_pred hhHhcCcHHHHHHHHHHhhc--CCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q psy6178 390 VVFIVGSSTCFRHMFNSLHE--NNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGE 467 (912)
Q Consensus 390 ~~~~l~~~~~l~~l~~~l~~--~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~ 467 (912)
+...+|.. ++..+.+.+.+ .+.+|+.+++++++++.+++++......+++.+++.+.....++++.||.++++++|+
T Consensus 348 la~~~~~~-~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~ 426 (852)
T 4fdd_A 348 LANVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSR 426 (852)
T ss_dssp HHHHHGGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHhccHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 77777753 55556555544 4678999999999999999988654456788888887776677899999999999999
Q ss_pred HHHHHhc--CcCcHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHH
Q psy6178 468 LCEWIDK--HPHTLETILNFLLHCLQQP--GLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLK 543 (912)
Q Consensus 468 y~~~l~~--~p~~l~~~l~~l~~~l~~~--~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~e 543 (912)
+++|+.. +..++..+++.++..+.++ +++..|+.||..+|+.+...+.||++.++..+....+. ...+....+++
T Consensus 427 l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~-~~~~~~~~~~~ 505 (852)
T 4fdd_A 427 YAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK-YQHKNLLILYD 505 (852)
T ss_dssp THHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH-CCHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHH-hChHHHHHHHH
Confidence 9999975 4578999999999999764 59999999999999999999999999999988765543 24445667889
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhH
Q psy6178 544 GVAIIVSDMPQD-QISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITEL 622 (912)
Q Consensus 544 ai~~vi~~~p~~-~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 622 (912)
+++.++..++.. ...+++..++.++++.+..+.. ++. .....+++++.+++.++. .+.++...+
T Consensus 506 ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d----~~~----~~~~~~~~l~~i~~~~g~-------~~~~~~~~i 570 (852)
T 4fdd_A 506 AIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKD----EDK----DLFPLLECLSSVATALQS-------GFLPYCEPV 570 (852)
T ss_dssp HHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCT----TCT----THHHHHHHHHHHHHHHGG-------GGHHHHHHH
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhccc----ccH----HHHHHHHHHHHHHHHHhH-------hHHHHHHHH
Confidence 999998766542 2345777877777766543211 111 223568888988888764 355666666
Q ss_pred hHHHHHHHHhh---------------ccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCCCcchHHhHHH
Q psy6178 623 WPVLSKTCETY---------------QQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSI 687 (912)
Q Consensus 623 ~~~l~~~l~~~---------------~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~L~~~~~ 687 (912)
++.+..++... ..+.+++..++..++.+++.+|.++.|++..
T Consensus 571 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~----------------------- 627 (852)
T 4fdd_A 571 YQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVAR----------------------- 627 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcC-----------------------
Confidence 66544444321 0133444555555555555555544444300
Q ss_pred HHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccCchhhHHHHHHHHHhcccC
Q psy6178 688 LVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLD 767 (912)
Q Consensus 688 lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~~~l~~i~~~~~~~l~~~ 767 (912)
.. +....+..+.. ..+++.++.|.++..+.+.++..+.+ .+..++......+...
T Consensus 628 --------------~~----~~~~l~~~l~~-----~~~~vr~~a~~~l~~l~~~~~~~~~~--~l~~~lp~l~~~l~~~ 682 (852)
T 4fdd_A 628 --------------SN----ILTLMYQCMQD-----KMPEVRQSSFALLGDLTKACFQHVKP--CIADFMPILGTNLNPE 682 (852)
T ss_dssp --------------CC----HHHHHHHHTTC-----SSHHHHHHHHHHHHHHHHHCGGGTGG--GHHHHHHHHHHTCCTT
T ss_pred --------------Cc----HHHHHHHHhCC-----CChhHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHcCcc
Confidence 01 11222233331 35789999999999999999876633 5666777777778766
Q ss_pred CchhHHHHHHHHHHHhhccCCCCcccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHccc-cCCCcchhhHHHHH
Q psy6178 768 HREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVF-SLHTYMMADVADVL 846 (912)
Q Consensus 768 ~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ll~~~~~-~~~~~~~~~~a~vL 846 (912)
+....+.++..+..+....+.. +..+-..++..++.-+.. +.+++..+..+..+
T Consensus 683 ~~~v~~~a~~alg~i~~~~~~~-------------------------~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~i 737 (852)
T 4fdd_A 683 FISVCNNATWAIGEISIQMGIE-------------------------MQPYIPMVLHQLVEIINRPNTPKTLLENTAITI 737 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHHGGG-------------------------GGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhhHh-------------------------HHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 7777788888888777554321 122223334444443332 34667889999999
Q ss_pred HHHHHhChHHHHH
Q psy6178 847 YELISVDRQVSNQ 859 (912)
Q Consensus 847 ~~l~~~~~~~~~~ 859 (912)
..+...+|+.+..
T Consensus 738 grl~~~~~~~~~~ 750 (852)
T 4fdd_A 738 GRLGYVCPQEVAP 750 (852)
T ss_dssp HHHHHHCHHHHGG
T ss_pred HHHHHhCHHHhCc
Confidence 9999999876543
No 9
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=7.2e-39 Score=398.12 Aligned_cols=699 Identities=12% Similarity=0.115 Sum_probs=462.3
Q ss_pred CCCCccHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccC---
Q psy6178 1 MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFF--- 77 (912)
Q Consensus 1 m~~~~~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~--- 77 (912)
|.+ ++++.+++...++ +|++.| |+++|++++++|+.|..+.+++.+.+ .+.++|++|+++||++|+++|.
T Consensus 1 M~d---~~~l~~~L~~~~s-pd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~-~~~~vR~~A~i~lkn~i~~~w~~~~ 73 (960)
T 1wa5_C 1 MSD---LETVAKFLAESVI-ASTAKT--SERNLRQLETQDGFGLTLLHVIASTN-LPLSTRLAGALFFKNFIKRKWVDEN 73 (960)
T ss_dssp CCH---HHHHHHHHHHTTS-GGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred CCc---HHHHHHHHHHhcC-CCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhcCCCcc
Confidence 654 8899999998665 477666 99999999999999999999997643 3589999999999999999997
Q ss_pred ---CCCcccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhh-cc-CcchHHHHHHHHhccc--chHHHHHHHHhh
Q psy6178 78 ---ELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQ-MS-AWEKPVVYIIEKLSHK--GSILALLEVLTV 150 (912)
Q Consensus 78 ---~l~~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~-~~-~W~~~~~~l~~~~~~~--~~~~~~L~iL~~ 150 (912)
.+|++++..||+.|++.+.. .+ +.||+++|.+++.++.. +| +||++++++++.++++ ......|.+|..
T Consensus 74 ~~~~l~~~~k~~ik~~ll~~l~~---~~-~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~ 149 (960)
T 1wa5_C 74 GNHLLPANNVELIKKEIVPLMIS---LP-NNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHS 149 (960)
T ss_dssp SCBSSCHHHHHHHHHHHHHHHHH---SC-HHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHh---CC-HHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 79999999999999999976 33 58999999999999986 45 7999999999999775 567788889998
Q ss_pred hhhhcccccCChhhHHHHHHHHHhhhhHHHHHHHHh---hhcCCCC-hHHHHHHHHHHHhhcCCcchHHHHHHHHhhchh
Q psy6178 151 LPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTC---QANCGDN-VSLQTKVLKCFTSWSSGSLHDAATDCVSALLPI 226 (912)
Q Consensus 151 l~ee~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~---l~~~~~~-~~~~~~~l~~l~sWi~~~l~~~a~~~l~~~l~~ 226 (912)
++++....-.+++.+.+++..+....+.+++++... ++....+ ..++ .+++|+. .++.++..+...
T Consensus 150 i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~-~~~~~~~---------~~~k~~~~l~~~ 219 (960)
T 1wa5_C 150 IFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLN-ILFDVLL---------VLIKLYYDFNCQ 219 (960)
T ss_dssp HHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHH-HHHHHHH---------HHHHHHHHHHSS
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHH---------HHHHHHHHHhhc
Confidence 988765421233445677777888888888887655 4443222 1121 2233322 122222222110
Q ss_pred hhccCCchHHHHHHHHHHhchHHHHHHHhc------CCC---------hHHHhhHHHHHHHHHHHHHHHHHhcccCCCcc
Q psy6178 227 LEYNNNFDAVNLNVFTCILSLEEQFHMAVA------HED---------LEKCMNYCKLFTELAESLLDRIVNESMTKQQP 291 (912)
Q Consensus 227 ~~~~~~~~~l~~~l~~~v~~l~~~~~~~~~------~~d---------~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~ 291 (912)
+ ..+.+...++..+ +.+...+. ..| ....+.++++++.+.+.+...+....
T Consensus 220 --~---~~~~~~~~~~~~~---~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~------ 285 (960)
T 1wa5_C 220 --D---IPEFFEDNIQVGM---GIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI------ 285 (960)
T ss_dssp --C---CCHHHHHTHHHHH---HHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH------
T ss_pred --c---chHHHHHHHHHHH---HHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 0 0111111111111 11111110 111 12346788889988888877665432
Q ss_pred hhhHHHHHHHhhhc---CCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcch--HHHHHHH-HHHHhhcCCCCC
Q psy6178 292 FSIKALDLVLICVG---HHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFK--PHVERLI-GALCKHCQLEPD 365 (912)
Q Consensus 292 ~~~~~l~~ll~~~~---~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~--~~~~~ll-~~l~~k~~~p~d 365 (912)
..+++.++.... +...+ |.+...+++||..+.+. ...+..++ |++.+++ .+++..|.|+++
T Consensus 286 --~~~~~~~~~~l~~~~~~~~~-----~~~~~~al~fl~~~~~~------~~~~~~~~~~~~l~~li~~~i~~~m~~~~~ 352 (960)
T 1wa5_C 286 --NEFIQITWNLLTSISNQPKY-----DILVSKSLSFLTAVTRI------PKYFEIFNNESAMNNITEQIILPNVTLREE 352 (960)
T ss_dssp --HHHHHHHHHHHHHCCSCTTS-----HHHHHHHHHHHHHHHTS------HHHHGGGCSHHHHHHHHHHTHHHHHSCCGG
T ss_pred --HHHHHHHHHHHHhcCCCcCc-----HHHHHHHHHHHHHHhCc------HhHHHHHcCchHHHHHHHHHhHHhcCCCHH
Confidence 134555555442 21222 45889999999987653 12245555 8999999 789999999654
Q ss_pred C--CCCcc---------ccchHHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHh----hc----CCCCccchhHHHHHHHH
Q psy6178 366 L--EGLLE---------EDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSL----HE----NNVMWEQTEAALYIMQS 426 (912)
Q Consensus 366 ~--~~~~e---------e~~~f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l----~~----~~~~w~~~Ea~L~~l~~ 426 (912)
+ .|++| |.+++.+.|+..++++..++...|. .+++.+++.+ .+ ++.+|+.+|||++++++
T Consensus 353 d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~-~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~alga 431 (960)
T 1wa5_C 353 DVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV-LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTA 431 (960)
T ss_dssp GTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch-hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 3 24322 1345567888899999999888873 3554444433 21 35789999999999999
Q ss_pred hhcccC---CCCcC-----cHHHH-----HHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCC
Q psy6178 427 VAKNVL---PEEND-----VVPKV-----VEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQP 493 (912)
Q Consensus 427 iae~~~---~~~~~-----~l~~l-----~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~ 493 (912)
++++.. ..... .+..+ ++.+ +.+.+.||.||.++|+++|+|++|+ +|+++.++++.++.++.++
T Consensus 432 ia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~~~l~~l~~~L~d~ 508 (960)
T 1wa5_C 432 LAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTD 508 (960)
T ss_dssp HHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCS
T ss_pred HHHHhccccCCcccccccccHHHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhCCC
Confidence 997632 11111 23332 2222 2222238999999999999999998 6789999999999999986
Q ss_pred C--hHHHHHHHHHHHHHH-----------hhhhhhhcHHHHHHHHHHhhhcCC--ChH--HHHHHHHHHHHHHhcCCHHH
Q psy6178 494 G--LASVTANALQSISTA-----------CCTHMVGHFNGLLQIIQCLDTLSI--SND--AAIGLLKGVAIIVSDMPQDQ 556 (912)
Q Consensus 494 ~--v~~~A~~al~~l~~~-----------~~~~L~~~~~~ll~~~~~l~~~~~--~~~--~~~~l~eai~~vi~~~p~~~ 556 (912)
+ |+.+||+||.+||+. ++..+.||++.+++.+..+.+..- +.+ +...++++++.++...+ ++
T Consensus 509 ~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~-~~ 587 (960)
T 1wa5_C 509 EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE-DS 587 (960)
T ss_dssp CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT-TT
T ss_pred ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH-Hh
Confidence 5 899999999999984 356799999999999987655410 111 45789999999998876 45
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccc
Q psy6178 557 ISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQD 636 (912)
Q Consensus 557 ~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 636 (912)
..+++..++..++..+....+. +++ +......+++++.+++..++ +++..+.+.+||++..+++...
T Consensus 588 ~~p~~~~l~~~L~~~l~~~~~~---~~~--~~~~~~~~e~l~~l~~~~~~------~~~~~~~~~~~p~~~~iL~~~~-- 654 (960)
T 1wa5_C 588 IQPLFPQLLAQFIEIVTIMAKN---PSN--PRFTHYTFESIGAILNYTQR------QNLPLLVDSMMPTFLTVFSEDI-- 654 (960)
T ss_dssp TGGGHHHHHHHHHHHHHHHTTS---CCC--HHHHHHHHHHHHHHHHTSCG------GGHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhhHHHHHHHHHHHHHHHHHhC---CCC--cHHHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHHHHHHHhhh--
Confidence 5567777777776666654322 221 12224478999999998432 4678889999999999998643
Q ss_pred hhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHH--HHHhcCCCcchHHhHHHHHHHh---cCccchHHHHHHHHHHhHH
Q psy6178 637 ARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIV--VLYSKHPHSSFLYLGSILVDEY---ATSHCVSGLLDMVQAFLPP 711 (912)
Q Consensus 637 ~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~--~~~~~~~~~~~L~~~~~lv~~~---g~~~~~~~l~~l~~~l~~~ 711 (912)
.+..+.++..+..++... ..+.|++..+++.+. ..+... .++..+..++..| |.+...+ +..++ +.
T Consensus 655 ~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~-~~~~l----~~ 725 (960)
T 1wa5_C 655 QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELK---GNIPAVTRLLKSFIKTDSSIFPD-LVPVL----GI 725 (960)
T ss_dssp TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCT---TTHHHHHHHHHHHHHHHGGGCSC-SHHHH----HH
T ss_pred HhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCC---CCchhHHHHHHHHHHhChHHHHH-HHHHH----HH
Confidence 456777777777777655 556777777777666 555433 2433333333333 1111111 11111 11
Q ss_pred HHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCcc-ccCchhhHHHHHHHHHhcccCCchhHH-HHHHHHHHHh
Q psy6178 712 TYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIA-FLTSSFISSVMQCGILATHLDHREANS-TVMKFFYDLI 783 (912)
Q Consensus 712 ~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~-~l~~~~l~~i~~~~~~~l~~~~~~~~~-~~~~fl~~li 783 (912)
.-..+.. ..+| ...|.++..++..+|.. + .+.++.++...+..+.....+..+ +.+.|+..+.
T Consensus 726 ~~~~~~~-----~~~~--~~a~~ll~~i~~~~~~~~~--~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 726 FQRLIAS-----KAYE--VHGFDLLEHIMLLIDMNRL--RPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp HHHHHTC-----TTTH--HHHHHHHHHHHHHSCHHHH--GGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCC-----Cccc--chHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 1111221 1244 78899999999999877 4 357888888888888766555544 6666766655
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=5.7e-36 Score=370.83 Aligned_cols=702 Identities=11% Similarity=0.142 Sum_probs=492.3
Q ss_pred CCCCccHHHHHHHHHHh-ccCCChhhHHHHHHHHHHhhcC--hhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcc--
Q psy6178 1 MESQPSLDTVYAVVHTL-YLNPNKTEKEKASQWLHQLQKS--IYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNA-- 75 (912)
Q Consensus 1 m~~~~~~~~v~~al~~l-~~~~~~~~~~~A~~~L~~~q~s--~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~-- 75 (912)
|| ..++.+++..+ ++ +|++.|++|+++|++++++ |+.|..+.+++.+.+ .++++|++|+++||++++++
T Consensus 1 Md----~~~l~~~L~~~~~s-~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~-~~~~vR~~A~~~lk~~i~~~w~ 74 (861)
T 2bpt_A 1 MS----TAEFAQLLENSILS-PDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDEN-TKLEGRILAALTLKNELVSKDS 74 (861)
T ss_dssp CC----HHHHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTT-SCHHHHHHHHHHHHTTTCCSSH
T ss_pred CC----HHHHHHHHHHcccC-cCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhhccCcCh
Confidence 67 57899999998 75 5999999999999999986 899999999998753 24899999999999999766
Q ss_pred ---------cCC-CCcccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhc-c--CcchHHHHHHHHhccc---c
Q psy6178 76 ---------FFE-LPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQM-S--AWEKPVVYIIEKLSHK---G 139 (912)
Q Consensus 76 ---------w~~-l~~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~-~--~W~~~~~~l~~~~~~~---~ 139 (912)
|.. ++++.+..||+.|++.+.. .+ ..+|++++.+|+.++... + .||++++.+++.+.++ .
T Consensus 75 ~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~---~~-~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~ 150 (861)
T 2bpt_A 75 VKTQQFAQRWITQVSPEAKNQIKTNALTALVS---IE-PRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPEN 150 (861)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC---SS-HHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHH
T ss_pred HHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCC---Cc-hHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHH
Confidence 565 9999999999999998865 33 478999999999999864 4 7999999999999764 3
Q ss_pred hHHHHHHHHhhhhhhcccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhcCCcchHHHHHH
Q psy6178 140 SILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDC 219 (912)
Q Consensus 140 ~~~~~L~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi~~~l~~~a~~~ 219 (912)
.....+.+|..+++++... . | .+..+.+.++..+...+.+...+..++..+++|+.+|+
T Consensus 151 ~r~~al~~l~~l~~~~~~~-~----~-----~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~----------- 209 (861)
T 2bpt_A 151 VKRASLLALGYMCESADPQ-S----Q-----ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSL----------- 209 (861)
T ss_dssp HHHHHHHHHHHHHHTSSTT-S----S-----TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHG-----------
T ss_pred HHHHHHHHHHHHHHcCChh-h----h-----HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH-----------
Confidence 4677888999999886531 0 0 13346677888888777765335788999999988654
Q ss_pred HHhhchhhhccCCchHHHHHHHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhh-HHHH
Q psy6178 220 VSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSI-KALD 298 (912)
Q Consensus 220 l~~~l~~~~~~~~~~~l~~~l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~-~~l~ 298 (912)
..+... .... .....+++ .+......+|.+.....++.+..+++.++..+.++. . .+++
T Consensus 210 --~~~~~~--~~~~-~~~~~ll~-------~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l--------~~~l~~ 269 (861)
T 2bpt_A 210 --IFIKNN--MERE-GERNYLMQ-------VVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM--------EQALYA 269 (861)
T ss_dssp --GGCHHH--HTSH-HHHHHHHH-------HHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH--------HHTHHH
T ss_pred --HHHHHH--ccCh-hHHHHHHH-------HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 111110 0000 00111222 122234566777778888888888887654433221 1 3466
Q ss_pred HHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCchh---------hhhcchHHHHHHHHHHHhhcCCCCCCCCC
Q psy6178 299 LVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDS---------LTVLFKPHVERLIGALCKHCQLEPDLEGL 369 (912)
Q Consensus 299 ~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~---------~~~~~~~~~~~ll~~l~~k~~~p~d~~~~ 369 (912)
.++....+.+.+ +...+++||..+.+......... .....++++..+++.++.++..+++++
T Consensus 270 ~~~~~~~~~~~~-------vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~-- 340 (861)
T 2bpt_A 270 LTIATMKSPNDK-------VASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDP-- 340 (861)
T ss_dssp HHHHHTTCSSHH-------HHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC---
T ss_pred HHHHHHcCCcHH-------HHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccccc--
Confidence 666666554444 99999999999987642110000 011335677888889988887654321
Q ss_pred ccccchHHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhc--CCCCccchhHHHHHHHHhhcccC-CCCcCcHHHHHHHH
Q psy6178 370 LEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHE--NNVMWEQTEAALYIMQSVAKNVL-PEENDVVPKVVEAI 446 (912)
Q Consensus 370 ~ee~~~f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~--~~~~w~~~Ea~L~~l~~iae~~~-~~~~~~l~~l~~~l 446 (912)
+++++ ..|..+.+.+..+...+|.. ++..+.+.+.+ .+.+|+.+|+++++++++++++. ....++++.+++.+
T Consensus 341 --~d~~~-~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l 416 (861)
T 2bpt_A 341 --EDDDW-NVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416 (861)
T ss_dssp --CCCCC-HHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred --ccccC-cHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 12233 56777888888888777743 45555555443 46789999999999999998875 22345677777776
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHHHHhcC---cCcHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHhh----hhhhhcH
Q psy6178 447 LHLPPSTHIAVRYTSLLLLGELCEWIDKH---PHTLETILNFLLHCLQQP-GLASVTANALQSISTACC----THMVGHF 518 (912)
Q Consensus 447 ~~~~~~~~~~v~~t~~~~lg~y~~~l~~~---p~~l~~~l~~l~~~l~~~-~v~~~A~~al~~l~~~~~----~~L~~~~ 518 (912)
.+...++++.||.++++++|+++.++..+ +++++.+++.++.++.++ +++..|++++..+|+.|. ..+.||+
T Consensus 417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~ 496 (861)
T 2bpt_A 417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFY 496 (861)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 66555678999999999999999999764 578999999999999874 589999999999999986 5788999
Q ss_pred HHHHHHHHHhhhc-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcC---C-CC-CCCCCChHH
Q psy6178 519 NGLLQIIQCLDTL-SISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQI---K-PE-KNKKSDPVI 592 (912)
Q Consensus 519 ~~ll~~~~~l~~~-~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~---~-~~-~~~~~~~~~ 592 (912)
+.++..+...... ......|..++++++.++...+. +..+++..++.++++.+...+.... . ++ .........
T Consensus 497 ~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 575 (861)
T 2bpt_A 497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD-TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN 575 (861)
T ss_dssp HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG-GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch-hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence 9999988765542 22245688999999999998874 4677888888999888876532100 0 00 000011134
Q ss_pred HHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHH
Q psy6178 593 WLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVL 672 (912)
Q Consensus 593 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~ 672 (912)
.++.++.++++++. .+.++...++|.+..++.....+ .+++.++.++..++..+|.++.||++.+++.+...
T Consensus 576 ~~~~l~~l~~~~~~-------~~~~~~~~l~~~l~~~l~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 647 (861)
T 2bpt_A 576 ILTVLAAVIRKSPS-------SVEPVADMLMGLFFRLLEKKDSA-FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKA 647 (861)
T ss_dssp HHHHHHHHHHHCGG-------GTGGGHHHHHHHHHHHHHSTTGG-GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHccCCCC-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 67788888888764 23456678888887777653222 78999999999999999999999999999999888
Q ss_pred HhcCCC---cchHHhHHHHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccC
Q psy6178 673 YSKHPH---SSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLT 749 (912)
Q Consensus 673 ~~~~~~---~~~L~~~~~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~ 749 (912)
+..... ...+.+++.++...|. ...+.+..++. .++..+... ..++++....+..+..+..+.+..+.
T Consensus 648 l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~l~~----~l~~~l~~~---~~~~~vr~~~~~~l~~l~~~~~~~~~- 718 (861)
T 2bpt_A 648 LNQVDSPVSITAVGFIADISNSLEE-DFRRYSDAMMN----VLAQMISNP---NARRELKPAVLSVFGDIASNIGADFI- 718 (861)
T ss_dssp HHCTTSHHHHHHHHHHHHHHHHTGG-GGHHHHHHHHH----HHHHHHHCT---TCCTTHHHHHHHHHHHHHHHHGGGGH-
T ss_pred hccccHHHHHHHHHHHHHHHHHhch-hccchHHHHHH----HHHHHhCCc---cccHhhhHHHHHHHHHHHHHhhhhHH-
Confidence 743221 2345566777777775 45555544443 344445431 24588999999999999998877653
Q ss_pred chhhHHHHHHHHHhcccCC----c-------hhHHHHHHHHHHHhhc
Q psy6178 750 SSFISSVMQCGILATHLDH----R-------EANSTVMKFFYDLIHN 785 (912)
Q Consensus 750 ~~~l~~i~~~~~~~l~~~~----~-------~~~~~~~~fl~~li~~ 785 (912)
+++..++.....++.... . ..-.+++..+..++..
T Consensus 719 -~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~ 764 (861)
T 2bpt_A 719 -PYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAG 764 (861)
T ss_dssp -HHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554444444321 1 1224556666666643
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=2.8e-31 Score=329.38 Aligned_cols=677 Identities=11% Similarity=0.139 Sum_probs=467.5
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHhhcC--hhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhh-----------cc
Q psy6178 9 TVYAVVHTLYLNPNKTEKEKASQWLHQLQKS--IYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQ-----------NA 75 (912)
Q Consensus 9 ~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s--~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~-----------~~ 75 (912)
++.+++..+++ +|++.|++|+++|++++++ |+.|..+..++.+.+ .++.+|++|+.+||+.+. ++
T Consensus 2 ~l~~~L~~~~s-~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~-~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 2 ELITILEKTVS-PDRLELEAAQKFLERAAVENLPTFLVELSRVLANPG-NSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 36778888775 5999999999999999987 889999999888753 248999999999999974 56
Q ss_pred cCCCCcccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhc-c--CcchHHHHHHHHhccc----chHHHHHHHH
Q psy6178 76 FFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQM-S--AWEKPVVYIIEKLSHK----GSILALLEVL 148 (912)
Q Consensus 76 w~~l~~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~-~--~W~~~~~~l~~~~~~~----~~~~~~L~iL 148 (912)
|..++++.+..||+.+++.+.. .++ .+ ++++.+++.++... + .||++++.++..+.++ ......+.+|
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~---~~~-~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l 154 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGT---ETY-RP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAI 154 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTT---CCS-SS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCC---CcH-HH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999999999998865 334 56 99999999998764 3 7999999999988654 2356788888
Q ss_pred hhhhhhcccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhcCCcchHHHHHHHHhhchhhh
Q psy6178 149 TVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILE 228 (912)
Q Consensus 149 ~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi~~~l~~~a~~~l~~~l~~~~ 228 (912)
..+++++.. +.+....+.++..+.+++.+...+..++..+++|+..|+ ..+..
T Consensus 155 ~~l~~~~~~------------~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~-------------~~~~~-- 207 (876)
T 1qgr_A 155 GYICQDIDP------------EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL-------------EFTKA-- 207 (876)
T ss_dssp HHHHHHSCH------------HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHG-------------GGCHH--
T ss_pred HHHHHhcCH------------hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH-------------HHHHH--
Confidence 888887532 125567788888888888765335678888999888654 11111
Q ss_pred ccCCchHHHHHHHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHhhhcCCC
Q psy6178 229 YNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHD 308 (912)
Q Consensus 229 ~~~~~~~l~~~l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ll~~~~~~~ 308 (912)
.... ......+++ .+.....++|.+.....++.+..+++.+...+.++. . ..+++.++.+..+.+
T Consensus 208 ~~~~-~~~~~~il~-------~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~------~-~~l~~~~~~~~~~~~ 272 (876)
T 1qgr_A 208 NFDK-ESERHFIMQ-------VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM------G-PALFAITIEAMKSDI 272 (876)
T ss_dssp HHTS-HHHHHHHHH-------HHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH------T-TTHHHHHHHHHTCSS
T ss_pred HHHh-HHHHHHHHH-------HHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH------H-HHHHHHHHHHhcCCc
Confidence 0000 010011222 122234456667777888888888876654433322 0 035777777665544
Q ss_pred CcccccCccchhhhhhhHHHHHHHhcccC-----------c--hhhhhcchHHHHHHHHHHHhhcCCCCCCCCCccccch
Q psy6178 309 YEATNLGGLVASITFRLWYRLSEILYVKN-----------D--DSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHD 375 (912)
Q Consensus 309 ~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~-----------~--~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee~~~ 375 (912)
.+ +...+++||..+.+...... . .......++++.+++..++..+....++ . |+++
T Consensus 273 ~~-------v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d-~---~~~~ 341 (876)
T 1qgr_A 273 DE-------VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEN-D---DDDD 341 (876)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSS-C---CTTC
T ss_pred hH-------HHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccc-c---cccc
Confidence 44 89999999999987532100 0 0011223456677888888887643221 1 1122
Q ss_pred HHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhc--CCCCccchhHHHHHHHHhhcccCCC-CcCcHHHHHHHHhcCCCC
Q psy6178 376 FYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHE--NNVMWEQTEAALYIMQSVAKNVLPE-ENDVVPKVVEAILHLPPS 452 (912)
Q Consensus 376 f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~--~~~~w~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~~~~~ 452 (912)
+ ..|+...+++..+...+|.. ++..+.+.+.+ .+.+|+.+++++++++.+++++.++ ..++++.+++.+.....+
T Consensus 342 ~-~~r~~a~~~l~~l~~~~~~~-~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d 419 (876)
T 1qgr_A 342 W-NPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419 (876)
T ss_dssp C-CHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred c-HHHHHHHHHHHHHHHHCcHh-hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3 56777778888877777743 45555555543 4678999999999999999987632 234667777766554456
Q ss_pred chHHHHHHHHHHHHHHHHHHhc---CcCcHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHhh--------------hhh
Q psy6178 453 THIAVRYTSLLLLGELCEWIDK---HPHTLETILNFLLHCLQQP-GLASVTANALQSISTACC--------------THM 514 (912)
Q Consensus 453 ~~~~v~~t~~~~lg~y~~~l~~---~p~~l~~~l~~l~~~l~~~-~v~~~A~~al~~l~~~~~--------------~~L 514 (912)
+++.||.++++++|++++++.. ++.+++.+++.++..+.++ +++..|++++..+++.+. ..+
T Consensus 420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l 499 (876)
T 1qgr_A 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCL 499 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSS
T ss_pred CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhh
Confidence 7899999999999999999876 5689999999999999874 589999999999999987 348
Q ss_pred hhcHHHHHHHHHHhhhcCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCC-CCCCC---C
Q psy6178 515 VGHFNGLLQIIQCLDTLSI--SNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKP-EKNKK---S 588 (912)
Q Consensus 515 ~~~~~~ll~~~~~l~~~~~--~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~-~~~~~---~ 588 (912)
.||++.++..+........ ....+..++++++.++...+. +..+++..++.++++.+...+.-.... +.... .
T Consensus 500 ~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~ 578 (876)
T 1qgr_A 500 SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK-DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFN 578 (876)
T ss_dssp TTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHH
T ss_pred hHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch-hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHH
Confidence 8999999998876554311 123567899999999999875 466788899999988887765322100 00000 0
Q ss_pred C-hHHHHHHHHHHhhhcC-CCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhHHHHH
Q psy6178 589 D-PVIWLDRLAAIFKHTS-PRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLV 666 (912)
Q Consensus 589 ~-~~~~l~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~ 666 (912)
. ....+.+++.+.+.++ . .+.++...++|.+..++....+...+.+.++.+++.++..+|..+.||++.++
T Consensus 579 ~~~~~~~~~l~~l~~~~~~~-------~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 651 (876)
T 1qgr_A 579 DLQSLLCATLQNVLRKVQHQ-------DALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFK 651 (876)
T ss_dssp HHHHHHHHHHHHHHTTSCHH-------HHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChh-------hhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 0 1224567777777665 2 23455677777777766543222468999999999999999999999999999
Q ss_pred HHHHHHHhcCCC----cchHHhHHHHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHh
Q psy6178 667 KQIVVLYSKHPH----SSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQR 742 (912)
Q Consensus 667 ~~l~~~~~~~~~----~~~L~~~~~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~ 742 (912)
+.+...+..... ...+.+++.++...|. .+.+.+..++ ...+..|... ..++++....+..+..+...
T Consensus 652 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~i~----~~l~~~l~~~---~~~~~~~~~~~~~l~~i~~~ 723 (876)
T 1qgr_A 652 PFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS-NIIPFCDEVM----QLLLENLGNE---NVHRSVKPQILSVFGDIALA 723 (876)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG-GGHHHHHHHH----HHHHHHHTCT---TSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHH----HHHHHHhCCc---cccHHhhHHHHHHHHHHHHH
Confidence 888877764421 2355667777777774 4555554444 3444455431 23567889999999999988
Q ss_pred CCccccCchhhHHHHHHHHHhcc
Q psy6178 743 APIAFLTSSFISSVMQCGILATH 765 (912)
Q Consensus 743 ~p~~~l~~~~l~~i~~~~~~~l~ 765 (912)
.+..+.+ .+..++.....++.
T Consensus 724 ~g~~~~~--~l~~~~~~l~~~~~ 744 (876)
T 1qgr_A 724 IGGEFKK--YLEVVLNTLQQASQ 744 (876)
T ss_dssp HGGGGGG--GHHHHHHHHHHHHT
T ss_pred hchhHHH--HHHHHHHHHHHHHh
Confidence 7766533 55666665555554
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.94 E-value=3.3e-25 Score=253.33 Aligned_cols=420 Identities=10% Similarity=0.149 Sum_probs=301.0
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHhhc--ChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcc-----------
Q psy6178 9 TVYAVVHTLYLNPNKTEKEKASQWLHQLQK--SIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNA----------- 75 (912)
Q Consensus 9 ~v~~al~~l~~~~~~~~~~~A~~~L~~~q~--s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~----------- 75 (912)
++.+++..+++ +|++.|++|+++|+++++ .|+.|....+++.+.+ .++++|++|+++||+.++++
T Consensus 2 ~l~~~L~~~~s-~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~-~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 2 ELITILEKTVS-PDRLELEAAQKFLERAAVENLPTFLVELSRVLANPG-NSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp CHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 36778888775 589999999999999998 4889999999998753 24899999999999999776
Q ss_pred cCCCCcccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhc-c--CcchHHHHHHHHhccc----chHHHHHHHH
Q psy6178 76 FFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQM-S--AWEKPVVYIIEKLSHK----GSILALLEVL 148 (912)
Q Consensus 76 w~~l~~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~-~--~W~~~~~~l~~~~~~~----~~~~~~L~iL 148 (912)
|..++++.+..||+.|++.+.. .++ .+ ++++.+++.++... + .||++++.+++.++++ ......+.+|
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~---~~~-~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGT---ETY-RP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTC---CCS-SS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCC---CCc-hh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 6789999999999999998865 334 67 99999999999864 4 7999999999998653 3467889999
Q ss_pred hhhhhhcccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhcCCcchHHHHHHHHhhchhhh
Q psy6178 149 TVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILE 228 (912)
Q Consensus 149 ~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi~~~l~~~a~~~l~~~l~~~~ 228 (912)
..+++++... .+..+.+.++..+..++.+...+..++..+++|+.+|+ ..+....
T Consensus 155 ~~l~~~~~~~------------~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~-------------~~~~~~~ 209 (462)
T 1ibr_B 155 GYICQDIDPE------------QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL-------------EFTKANF 209 (462)
T ss_dssp HHHHHHSCGG------------GTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT-------------TTTHHHH
T ss_pred HHHHHhCCch------------hhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH-------------HHHHHhh
Confidence 9999886320 13345667888888888765325788999999988664 1111100
Q ss_pred ccCCchHHHHH-HHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHhhhcCC
Q psy6178 229 YNNNFDAVNLN-VFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHH 307 (912)
Q Consensus 229 ~~~~~~~l~~~-l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ll~~~~~~ 307 (912)
.. ..... +++ .+.....+.|.+....+++.+..+++.+...+.+.. .. .+++.++.+..+.
T Consensus 210 --~~--~~~~~~l~~-------~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~------~~-~l~~~~~~~~~~~ 271 (462)
T 1ibr_B 210 --DK--ESERHFIMQ-------VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM------GP-ALFAITIEAMKSD 271 (462)
T ss_dssp --TS--HHHHHHHHH-------HHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT------TT-THHHHHHHHHHCS
T ss_pred --hh--hHHHHHHHH-------HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-HHHHHHHHHHcCC
Confidence 00 00111 112 222334566778888899999998887765443332 10 3566666666554
Q ss_pred CCcccccCccchhhhhhhHHHHHHHhccc----Cc---------hhhhhcchHHHHHHHHHHHhhcCCCCCCCCCccccc
Q psy6178 308 DYEATNLGGLVASITFRLWYRLSEILYVK----ND---------DSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDH 374 (912)
Q Consensus 308 ~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~----~~---------~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee~~ 374 (912)
+.+ +...+++||..+.+..... .+ ......+++++..+++.++..+.-.++++ +++
T Consensus 272 ~~~-------v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~----~~~ 340 (462)
T 1ibr_B 272 IDE-------VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND----DDD 340 (462)
T ss_dssp SHH-------HHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSC----CTT
T ss_pred chH-------HHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccccc----ccc
Confidence 444 8999999999998753110 00 01122345566778888877775322111 112
Q ss_pred hHHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhc--CCCCccchhHHHHHHHHhhcccCCC-CcCcHHHHHHHHhcCCC
Q psy6178 375 DFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHE--NNVMWEQTEAALYIMQSVAKNVLPE-ENDVVPKVVEAILHLPP 451 (912)
Q Consensus 375 ~f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~--~~~~w~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~~~~ 451 (912)
++ ..|+...+++..++..+|. .++..+.+.+.+ .+.+|+.+++++++++++++++.++ ..++++.+++.+.....
T Consensus 341 ~~-~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~ 418 (462)
T 1ibr_B 341 DW-NPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK 418 (462)
T ss_dssp CC-SHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG
T ss_pred cc-hHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 22 4677888899999888884 466666665554 5678999999999999999987632 34566777777666555
Q ss_pred CchHHHHHHHHHHHHHHHHHHhc---CcCcHHHHHHHHHHhcC
Q psy6178 452 STHIAVRYTSLLLLGELCEWIDK---HPHTLETILNFLLHCLQ 491 (912)
Q Consensus 452 ~~~~~v~~t~~~~lg~y~~~l~~---~p~~l~~~l~~l~~~l~ 491 (912)
++++.||.++++++|++++|+.. ++++++++++.++.+|.
T Consensus 419 d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp CSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 67899999999999999999987 46899999999988764
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.84 E-value=5e-17 Score=207.96 Aligned_cols=667 Identities=12% Similarity=0.086 Sum_probs=409.7
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHhhcCh----------hHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccC
Q psy6178 8 DTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSI----------YAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFF 77 (912)
Q Consensus 8 ~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~----------~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~ 77 (912)
.++.+.+..+. ++|++.|++|.+.|.+.-+.+ .........|.+ ++ ..+|..|+..|.....
T Consensus 6 ~~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d-~~--~~vR~~A~~~L~~l~~---- 77 (1230)
T 1u6g_C 6 YHISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED-KN--GEVQNLAVKCLGPLVS---- 77 (1230)
T ss_dssp HHHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC-SS--HHHHHHHHHHHHHHHT----
T ss_pred hHHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC-CC--HHHHHHHHHHHHHHHH----
Confidence 45666677765 469999999999887665433 223334455553 33 8999999999987765
Q ss_pred CCCcccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhcc-C----------cchHHHHHHHHhcc-c--chHHH
Q psy6178 78 ELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS-A----------WEKPVVYIIEKLSH-K--GSILA 143 (912)
Q Consensus 78 ~l~~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~~-~----------W~~~~~~l~~~~~~-~--~~~~~ 143 (912)
.++++.+..++..|++.+.. ..+ .+|...+.+|+.++...+ . |+..++.++..+.. + .....
T Consensus 78 ~~~~~~~~~i~~~Ll~~l~d---~~~-~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~ 153 (1230)
T 1u6g_C 78 KVKEYQVETIVDTLCTNMLS---DKE-QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLE 153 (1230)
T ss_dssp TSCHHHHHHHHHHHHHHTTC---SSS-HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhcC---CcH-HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 34555666777777776643 344 688888999998886554 2 99999999999873 3 44567
Q ss_pred HHHHHhhhhhhcccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhcCCcchHHHHHHHHhh
Q psy6178 144 LLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSAL 223 (912)
Q Consensus 144 ~L~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi~~~l~~~a~~~l~~~ 223 (912)
.+.+|..+++...+ .+..+.+.++..+...+.+. +..++..+++|+.+ +
T Consensus 154 al~~l~~~~~~~~~-------------~l~~~~~~ll~~l~~~L~~~--~~~vR~~a~~al~~----------------l 202 (1230)
T 1u6g_C 154 ALDIMADMLSRQGG-------------LLVNFHPSILTCLLPQLTSP--RLAVRKRTIIALGH----------------L 202 (1230)
T ss_dssp HHHHHHHHHHHTCS-------------SCTTTHHHHHHHHGGGGGCS--SHHHHHHHHHHHHH----------------H
T ss_pred HHHHHHHHHHHhHh-------------HHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHH----------------H
Confidence 77888887776544 11224466777777777653 45677777777653 2
Q ss_pred chhhhccCCchHHHHHHHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHhh
Q psy6178 224 LPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLIC 303 (912)
Q Consensus 224 l~~~~~~~~~~~l~~~l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ll~~ 303 (912)
.....+. ....++..+++ .+.. ..+.+.....+..+..++......+.++. -.+++.++..
T Consensus 203 ~~~~~~~-~~~~~l~~l~~-------~L~~---~~~~~~r~~a~~~l~~l~~~~~~~~~~~l--------~~l~~~ll~~ 263 (1230)
T 1u6g_C 203 VMSCGNI-VFVDLIEHLLS-------ELSK---NDSMSTTRTYIQCIAAISRQAGHRIGEYL--------EKIIPLVVKF 263 (1230)
T ss_dssp TTTC-----CTTHHHHHHH-------HHHH---TCSSCSCTTHHHHHHHHHHHSSGGGTTSC--------TTHHHHHHHH
T ss_pred HHhcCHH-HHHHHHHHHHH-------Hhcc---CCchhHHHHHHHHHHHHHHHhHHHHHHHH--------HHHHHHHHHH
Confidence 3221111 01122222222 2222 11223344566666666654432222211 2367888887
Q ss_pred hcCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCCCCCcc--ccchHHHHHh
Q psy6178 304 VGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLE--EDHDFYDFRL 381 (912)
Q Consensus 304 ~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~e--e~~~f~~~R~ 381 (912)
..+++.+ +...++..|..+.+... +.+.|++..+++.+++.+.++++...+.+ +.+++.+.
T Consensus 264 l~d~~~~-------vR~~a~~~l~~l~~~~~--------~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~-- 326 (1230)
T 1u6g_C 264 CNVDDDE-------LREYCIQAFESFVRRCP--------KEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD-- 326 (1230)
T ss_dssp HSSCCTT-------THHHHHHHHHHHHHCTT--------CCCHHHHHHHHHHHTTCCCCC--------------------
T ss_pred hcCCCHH-------HHHHHHHHHHHHHHHCh--------HHHHHhHHHHHHHHHHHhCCCCCCCCccccccccccccc--
Confidence 7765544 88888888877766421 34578899999999999988543211000 00111100
Q ss_pred HhHHHHHhhhHhcCcHHHHHHHHHHhh-cCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHH
Q psy6178 382 KVSELVKDVVFIVGSSTCFRHMFNSLH-ENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYT 460 (912)
Q Consensus 382 ~~~d~l~~~~~~l~~~~~l~~l~~~l~-~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t 460 (912)
. +.+...+ ...... ..+..|..++++..++..++...+..-.++++.+++.+.....+.++.+|..
T Consensus 327 --~----------~~~~~~~-~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~ 393 (1230)
T 1u6g_C 327 --G----------GDDDDQG-SDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKAD 393 (1230)
T ss_dssp -------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHH
T ss_pred --c----------cccchhh-cccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 0 0000000 000000 1356799899999999999985432224555566666665555667899999
Q ss_pred HHHHHHHHHHHHhcC--------------------cCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcH
Q psy6178 461 SLLLLGELCEWIDKH--------------------PHTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHF 518 (912)
Q Consensus 461 ~~~~lg~y~~~l~~~--------------------p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~ 518 (912)
++.+++.+..-+... ..+++.+++.+...+.+++ ++..++.++..+++.+...+.+|+
T Consensus 394 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l 473 (1230)
T 1u6g_C 394 VFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI 473 (1230)
T ss_dssp HHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH
T ss_pred HHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH
Confidence 998887766543210 1356677777777788765 788899999999999988888999
Q ss_pred HHHHHHHHHhhhcCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHH
Q psy6178 519 NGLLQIIQCLDTLSI-SNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRL 597 (912)
Q Consensus 519 ~~ll~~~~~l~~~~~-~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l 597 (912)
+.++..+........ ....+...+..++.++...+++...+++..++..++. .+... . .......+..+
T Consensus 474 ~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~----~l~d~----~--~~v~~~al~~l 543 (1230)
T 1u6g_C 474 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA----CVGDP----F--YKITSEALLVT 543 (1230)
T ss_dssp HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHH----HHTCS----S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHH----HHccc----c--hHHHHHHHHHH
Confidence 999988876544321 2356778888888888877766666676666655553 22211 1 11113457778
Q ss_pred HHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCC
Q psy6178 598 AAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHP 677 (912)
Q Consensus 598 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~ 677 (912)
+.+++.+++........+.++++.++|.+...+.....+.++++.+..+++.++...|..+.++++.+++.+........
T Consensus 544 ~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~ 623 (1230)
T 1u6g_C 544 QQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI 623 (1230)
T ss_dssp HHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccch
Confidence 88888776511111235678889999998887765556789999999999999999999999999999988876654321
Q ss_pred C-cchHHhHHHHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccCchhhHHH
Q psy6178 678 H-SSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSV 756 (912)
Q Consensus 678 ~-~~~L~~~~~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~~~l~~i 756 (912)
. ...+...+.+...-+..+..+.+..++..+ ...+. .+++++.......+.+++++++..+ ..+.+..+
T Consensus 624 ~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L----~~~l~-----~~~~~~r~~a~~al~~l~~~~~~~~-~~~~v~~~ 693 (1230)
T 1u6g_C 624 TRLTTVKALTLIAGSPLKIDLRPVLGEGVPIL----ASFLR-----KNQRALKLGTLSALDILIKNYSDSL-TAAMIDAV 693 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHH----HHHTT-----SCCHHHHHHHHHHHHHHHHHCCTTC-CHHHHHHH
T ss_pred hHHHHHHHHHHHHhCccccchHHHHHHHHHHH----HHHHH-----hCCHHHHHHHHHHHHHHHhcccccC-CHHHHHHH
Confidence 0 112222332221111112334444433332 23333 3567788999999999999998655 33344444
Q ss_pred HHHHHHhcccCCchhHHHHHHHHHHHhhcc
Q psy6178 757 MQCGILATHLDHREANSTVMKFFYDLIHNN 786 (912)
Q Consensus 757 ~~~~~~~l~~~~~~~~~~~~~fl~~li~~~ 786 (912)
+......+...+.+....++.++..++...
T Consensus 694 l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~ 723 (1230)
T 1u6g_C 694 LDELPPLISESDMHVSQMAISFLTTLAKVY 723 (1230)
T ss_dssp HTTCGGGSCTTCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhhcCcchHHHHHHHHHHHHHHHHhC
Confidence 432222233455667789999999998654
No 14
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.70 E-value=1.4e-13 Score=170.29 Aligned_cols=346 Identities=14% Similarity=0.112 Sum_probs=234.0
Q ss_pred CCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh-c-CcCcHHHHHHHHHH
Q psy6178 411 NVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID-K-HPHTLETILNFLLH 488 (912)
Q Consensus 411 ~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~-~-~p~~l~~~l~~l~~ 488 (912)
+.+|..+.++..+++.+++.++ +..++.+++.+.+...+.++.+|.+++.++|.+++... . -..+++.+++.++.
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~ 415 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE 415 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999875 35677777776554445689999999999999876442 1 12367888999999
Q ss_pred hcCCCC--hHHHHHHHHHHHHHHhhhh--hhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCC-----------
Q psy6178 489 CLQQPG--LASVTANALQSISTACCTH--MVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMP----------- 553 (912)
Q Consensus 489 ~l~~~~--v~~~A~~al~~l~~~~~~~--L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p----------- 553 (912)
.+.++. |+..|+.++.++++.+... ..++++.++..+...... +...+..+..+++.++...+
T Consensus 416 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~ 493 (876)
T 1qgr_A 416 LMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAADVADDQEE 493 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCC
T ss_pred HhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 998865 9999999999999998765 357888888877655443 35567788888888876532
Q ss_pred --HHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHH
Q psy6178 554 --QDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCE 631 (912)
Q Consensus 554 --~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 631 (912)
.+...+++ .+++..|..++.... .+........++.++.+++..+. ...+++..++|.+...+.
T Consensus 494 ~~~~~l~~~~----~~il~~L~~~l~~~~---~~~~~~r~~~~~~l~~l~~~~~~-------~~~~~~~~l~~~l~~~l~ 559 (876)
T 1qgr_A 494 PATYCLSSSF----ELIVQKLLETTDRPD---GHQNNLRSSAYESLMEIVKNSAK-------DCYPAVQKTTLVIMERLQ 559 (876)
T ss_dssp CCCCSSTTTH----HHHHHHHHHHTTSCS---SCSTTHHHHHHHHHHHHHHTCCS-------TTHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHhH----HHHHHHHHHHHhCcC---cchhhHHHHHHHHHHHHHHHCch-------hhHHHHHHHHHHHHHHHH
Confidence 01122333 444444444444321 11111224467888988887753 245677888888776665
Q ss_pred hh--------c-cc----hhHHHHHHHHHHHHHHHhc-hhhHHhHHHHHHHHHHHHhcCC-----CcchHHhHHHHHHHh
Q psy6178 632 TY--------Q-QD----ARVMEHSSRCLRYAIRCVG-KDFAHLLEPLVKQIVVLYSKHP-----HSSFLYLGSILVDEY 692 (912)
Q Consensus 632 ~~--------~-~~----~~v~e~~~~~~~~~~~~l~-~~~~p~l~~l~~~l~~~~~~~~-----~~~~L~~~~~lv~~~ 692 (912)
.. . +| +++.+.+|.++..++..+| ..+.|+++.+++.+...+.... ....+.+++.++...
T Consensus 560 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~ 639 (876)
T 1qgr_A 560 QVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639 (876)
T ss_dssp HHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHH
Confidence 42 1 22 4567889999999999999 9999999999999888775442 123455666777777
Q ss_pred cCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccCchhhHHHHHHHHHhccc--CCch
Q psy6178 693 ATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHL--DHRE 770 (912)
Q Consensus 693 g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~~~l~~i~~~~~~~l~~--~~~~ 770 (912)
|. .+.+.+..++..+ ...+.. .+++++....+..+..+++..+..+ .+.+..++...+..+.. .+.+
T Consensus 640 ~~-~~~~~~~~~~~~l----~~~l~~----~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~i~~~l~~~l~~~~~~~~ 708 (876)
T 1qgr_A 640 GG-EFLKYMEAFKPFL----GIGLKN----YAEYQVCLAAVGLVGDLCRALQSNI--IPFCDEVMQLLLENLGNENVHRS 708 (876)
T ss_dssp GG-GGGGGHHHHHHHH----HHHHHH----CTTHHHHHHHHHHHHHHHHHHGGGG--HHHHHHHHHHHHHHHTCTTSCGG
T ss_pred Hh-hHHHHHHHHHHHH----HHHHcC----cchHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHhCCccccHH
Confidence 65 4555555544333 333432 1467888999999999988776443 23456666666666655 2455
Q ss_pred hHHHHHHHHHHHhhcc
Q psy6178 771 ANSTVMKFFYDLIHNN 786 (912)
Q Consensus 771 ~~~~~~~fl~~li~~~ 786 (912)
....++..+..++...
T Consensus 709 ~~~~~~~~l~~i~~~~ 724 (876)
T 1qgr_A 709 VKPQILSVFGDIALAI 724 (876)
T ss_dssp GHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6667777777777543
No 15
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.70 E-value=2.9e-12 Score=157.47 Aligned_cols=666 Identities=10% Similarity=0.043 Sum_probs=374.1
Q ss_pred CCChhhHHHHHHHHHHhhcC------hhHH-HHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHH
Q psy6178 20 NPNKTEKEKASQWLHQLQKS------IYAW-KIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLI 92 (912)
Q Consensus 20 ~~~~~~~~~A~~~L~~~q~s------~~aw-~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~~lk~~Ll 92 (912)
+.++..|..|--.|++.-+. ++.- .+-..++..-.+.++.+|.-++..+..-.+.+|. +.+..+-..|+
T Consensus 59 ~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~----~~wp~ll~~L~ 134 (852)
T 4fdd_A 59 SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL----QNWPDLLPKLC 134 (852)
T ss_dssp TSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT----TTCTTHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc----cccHHHHHHHH
Confidence 34678888888888765432 1111 1222332222222378999999999988776532 34445666666
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHHhhccC----------cchHHHHHHHHhccc--chHHHHHHHHhhhhhhcccccC
Q psy6178 93 EHLCRTNDTSGKNIITQLALALADLALQMSA----------WEKPVVYIIEKLSHK--GSILALLEVLTVLPEEVNVLKL 160 (912)
Q Consensus 93 ~~l~~~~~~~~~~v~~kl~~~la~l~~~~~~----------W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~ee~~~~~~ 160 (912)
+.+.. +.+ .++..-..++..+....+. ++..++.++..+++. ......+..|..+... .
T Consensus 135 ~~l~~---~~~-~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~-----~ 205 (852)
T 4fdd_A 135 SLLDS---EDY-NTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS-----R 205 (852)
T ss_dssp HHHSC---SSH-HHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT-----T
T ss_pred HHHcC---CCH-HHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-----c
Confidence 66543 333 5566556666666654331 344555555555443 1122233333322211 0
Q ss_pred ChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhcCCcchHHHHHHHHhhchhhhccCCchHHHHHH
Q psy6178 161 GKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNV 240 (912)
Q Consensus 161 ~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi~~~l~~~a~~~l~~~l~~~~~~~~~~~l~~~l 240 (912)
+ +.+....+.++..+...+++ .+..++..+++|+. .+....... ....+..+
T Consensus 206 ~--------~~~~~~~~~~l~~l~~~~~d--~~~~vr~~a~~~L~----------------~l~~~~~~~--~~~~l~~l 257 (852)
T 4fdd_A 206 T--------QALMLHIDSFIENLFALAGD--EEPEVRKNVCRALV----------------MLLEVRMDR--LLPHMHNI 257 (852)
T ss_dssp C--------HHHHTSHHHHHHHHHHHHTC--CCHHHHHHHHHHHH----------------HHHHHCHHH--HGGGHHHH
T ss_pred c--------HHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHH----------------HHHHhCHHH--HHHHHHHH
Confidence 0 12233344455544444444 24567777777665 333221110 01122233
Q ss_pred HHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHH--HHHHHHhcccCCCcchhhHHHHHHHhhhc-----------CC
Q psy6178 241 FTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAES--LLDRIVNESMTKQQPFSIKALDLVLICVG-----------HH 307 (912)
Q Consensus 241 ~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~--~~~~l~~~~~~~~~~~~~~~l~~ll~~~~-----------~~ 307 (912)
++.+ .....+.|.+.....+..+..+++. ....+.+. ...++..++.... .+
T Consensus 258 ~~~l-------~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~--------~~~l~p~ll~~l~~~e~d~~~~~~d~ 322 (852)
T 4fdd_A 258 VEYM-------LQRTQDQDENVALEACEFWLTLAEQPICKDVLVRH--------LPKLIPVLVNGMKYSDIDIILLKGDV 322 (852)
T ss_dssp HHHH-------HHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTT--------HHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred HHHH-------HHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHH--------HHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence 3322 2233455666666666666666542 11111111 1235566665542 21
Q ss_pred CCcccc----cCccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCCCCCccccchHHHHHhHh
Q psy6178 308 DYEATN----LGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKV 383 (912)
Q Consensus 308 ~~~~~~----~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee~~~f~~~R~~~ 383 (912)
+.|+.. -.-.++..+......+.+...+ .++..+++.+...+. +.+| ..|...
T Consensus 323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-----------~~~~~l~~~l~~~l~---~~~~---------~~R~aa 379 (852)
T 4fdd_A 323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRD-----------ELLPHILPLLKELLF---HHEW---------VVKESG 379 (852)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHGG-----------GGHHHHHHHHHHHHT---CSSH---------HHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHhc---CCCH---------HHHHHH
Confidence 111000 0011344444444444443211 112223333333322 1112 244444
Q ss_pred HHHHHhhhHhcCc------HHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-CcCcHHHHHHHHhcCCCCchHH
Q psy6178 384 SELVKDVVFIVGS------STCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-ENDVVPKVVEAILHLPPSTHIA 456 (912)
Q Consensus 384 ~d~l~~~~~~l~~------~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~~~~~~~~~ 456 (912)
...+..+....+. +.++..+...+ .+.++..+.++.++++.+++.+... ...++..+++.+...-.+.++.
T Consensus 380 ~~alg~i~~~~~~~~~~~l~~~l~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~ 457 (852)
T 4fdd_A 380 ILVLGAIAEGCMQGMIPYLPELIPHLIQCL--SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKR 457 (852)
T ss_dssp HHHHHHTTTTTHHHHGGGHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHH
Confidence 4444433322111 12333333333 5678888999999999999876532 3566777777665543345799
Q ss_pred HHHHHHHHHHHHHHHHhcC-cCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhh--hcHHHHHHHHHHhh-h
Q psy6178 457 VRYTSLLLLGELCEWIDKH-PHTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMV--GHFNGLLQIIQCLD-T 530 (912)
Q Consensus 457 v~~t~~~~lg~y~~~l~~~-p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~--~~~~~ll~~~~~l~-~ 530 (912)
+|..+++.++.+++-.... ..+++.+++.++..+.... ....+..++..+++..+..+. +|++.++..+.... .
T Consensus 458 vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~ 537 (852)
T 4fdd_A 458 VQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM 537 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHh
Confidence 9999999999999876543 2478899998888776543 344577888888887776553 46666666554321 1
Q ss_pred cCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhc----CCC---CCCCCCChHHHHHHHHHHhhh
Q psy6178 531 LSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQ----IKP---EKNKKSDPVIWLDRLAAIFKH 603 (912)
Q Consensus 531 ~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~----~~~---~~~~~~~~~~~l~~l~~~~~~ 603 (912)
...+......++++++.++.++.. ...+++..++..++..+...+.+. .++ +..........++.++.++++
T Consensus 538 l~d~~~~~~~~~~~l~~i~~~~g~-~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~ 616 (852)
T 4fdd_A 538 LKDEDKDLFPLLECLSSVATALQS-GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEG 616 (852)
T ss_dssp SCTTCTTHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHH
Confidence 111112234789999999988753 556677777777776666654311 001 111122234568899999999
Q ss_pred cCCCcCCCCCChHHHH--HhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCCC---
Q psy6178 604 TSPRIMSEPHPCQGVI--TELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPH--- 678 (912)
Q Consensus 604 l~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~~--- 678 (912)
++.. +.+++ ..+++.+...+. ..++++++.++.+++.+.+.++..+.||++.+++.+...+.....
T Consensus 617 l~~~-------~~~~~~~~~~~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~ 687 (852)
T 4fdd_A 617 LGGN-------IEQLVARSNILTLMYQCMQ--DKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVC 687 (852)
T ss_dssp HGGG-------GHHHHHTCCHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHH
T ss_pred HhHh-------HHHHhcCCcHHHHHHHHhC--CCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHH
Confidence 8742 34454 566776665543 235889999999999999999999999999999988887743221
Q ss_pred cchHHhHHHHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccCchhhHHHHH
Q psy6178 679 SSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQ 758 (912)
Q Consensus 679 ~~~L~~~~~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~~~l~~i~~ 758 (912)
....+.++.++..+|. +..+.+..++..+ +.+|+.+ ..+..+.+.....+.++..++|..+- +.+..++.
T Consensus 688 ~~a~~alg~i~~~~~~-~~~p~~~~il~~L----~~~l~~~---~~~~~~~~~a~~~igrl~~~~~~~~~--~~l~~~~~ 757 (852)
T 4fdd_A 688 NNATWAIGEISIQMGI-EMQPYIPMVLHQL----VEIINRP---NTPKTLLENTAITIGRLGYVCPQEVA--PMLQQFIR 757 (852)
T ss_dssp HHHHHHHHHHHHHHGG-GGGGGTHHHHHHH----HHHHTCS---SCCHHHHHHHHHHHHHHHHHCHHHHG--GGHHHHHH
T ss_pred HHHHHHHHHHHHHhhH-hHHHHHHHHHHHH----HHHhCCC---CCCchHHHHHHHHHHHHHHhCHHHhC--ccHHHHHH
Confidence 2345667777777775 5556655555443 4455532 22345788899999999999997653 44566655
Q ss_pred HHHHhcc-cCCchhHHHHHHHHHHHhhcc
Q psy6178 759 CGILATH-LDHREANSTVMKFFYDLIHNN 786 (912)
Q Consensus 759 ~~~~~l~-~~~~~~~~~~~~fl~~li~~~ 786 (912)
.-+.++. ..+.+-..++++-+..++...
T Consensus 758 ~~~~~l~~~~d~~e~~~a~~~l~~li~~~ 786 (852)
T 4fdd_A 758 PWCTSLRNIRDNEEKDSAFRGICTMISVN 786 (852)
T ss_dssp HHHHHHHTSCSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhC
Confidence 5555564 455555778888888888764
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.66 E-value=2.9e-12 Score=158.14 Aligned_cols=636 Identities=10% Similarity=0.053 Sum_probs=355.7
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHhhcC--h-hHHH----HHHHHhccCCCcchHHHHHHHHHHHHHhhcccC-CC
Q psy6178 8 DTVYAVVHTLYLNPNKTEKEKASQWLHQLQKS--I-YAWK----IADEMLLHQNELGLEAVYFSAQTMRQKVQNAFF-EL 79 (912)
Q Consensus 8 ~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s--~-~aw~----~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~-~l 79 (912)
+.+.+.+-.....+++..|+++-.-|..+-+. | ..|. .....+.++++ +.+|..|..++..-... +. +.
T Consensus 94 ~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~--~~~r~~al~~l~~l~~~-~~~~~ 170 (861)
T 2bpt_A 94 NQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQP--ENVKRASLLALGYMCES-ADPQS 170 (861)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSC--HHHHHHHHHHHHHHHHT-SSTTS
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHc-CChhh
Confidence 34444444444455677888888877765443 3 2464 33344444323 78999988887766553 32 11
Q ss_pred --CcccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhc----c---CcchHHHHHHHHhccc--chHHHHHHHH
Q psy6178 80 --PSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQM----S---AWEKPVVYIIEKLSHK--GSILALLEVL 148 (912)
Q Consensus 80 --~~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~----~---~W~~~~~~l~~~~~~~--~~~~~~L~iL 148 (912)
-......+-..++..+... +.+ ..||.....++..+.... . .|+..++.+...+.+. ......++.|
T Consensus 171 ~~~~~~~~~ll~~l~~~l~~~-~~~-~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 171 QALVSSSNNILIAIVQGAQST-ETS-KAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp STTGGGHHHHHHHHHHHHSTT-CCC-HHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcCC-CCC-HHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 0112333333333333221 013 368877777777664221 1 2455666666655443 2234455555
Q ss_pred hhhhhhcccccCChhhHHHHHHHHHhhhh-HHHHHHHHhhhcCCCChHHHHHHHHHHHhhcCCcchHHHHHHHHhhchhh
Q psy6178 149 TVLPEEVNVLKLGKNRREEFEEELKAAGP-IVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPIL 227 (912)
Q Consensus 149 ~~l~ee~~~~~~~~~~r~~~~~~l~~~~~-~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi~~~l~~~a~~~l~~~l~~~ 227 (912)
..+.+...+ .+..+.. .++.++...+.+. +..++..+++++.. ++......
T Consensus 249 ~~l~~~~~~-------------~~~~~l~~~l~~~~~~~~~~~--~~~vr~~a~~~l~~-------------l~~~~~~~ 300 (861)
T 2bpt_A 249 CKIMSKYYT-------------FMKPYMEQALYALTIATMKSP--NDKVASMTVEFWST-------------ICEEEIDI 300 (861)
T ss_dssp HHHHHHHGG-------------GCHHHHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHH-------------HHHHHHHH
T ss_pred HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHH-------------HHHHHHhh
Confidence 555544322 1122333 5556665555542 45677766666542 11111000
Q ss_pred ----hc-------cCC-chHHHHHHHHHHhchHHHHHHHhcC-------CChHHHhhHHHHHHHHHHHHHHHHHhcccCC
Q psy6178 228 ----EY-------NNN-FDAVNLNVFTCILSLEEQFHMAVAH-------EDLEKCMNYCKLFTELAESLLDRIVNESMTK 288 (912)
Q Consensus 228 ----~~-------~~~-~~~l~~~l~~~v~~l~~~~~~~~~~-------~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 288 (912)
.. ... ....+..++|.++. .+.. ++.......++.+..++..+. +..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~-------~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~----~~~--- 366 (861)
T 2bpt_A 301 AYELAQFPQSPLQSYNFALSSIKDVVPNLLN-------LLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG----NHI--- 366 (861)
T ss_dssp HHHHHHCTTCSCCCCCHHHHHHHHHHHHHHH-------HTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG----GGG---
T ss_pred hhhhhhccCCchhhHHHHHHHHHHHHHHHHH-------HHHhcccccccccCcHHHHHHHHHHHHHHHcc----HhH---
Confidence 00 000 01223334443322 2221 112233444455544444321 110
Q ss_pred CcchhhHHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCCCC
Q psy6178 289 QQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEG 368 (912)
Q Consensus 289 ~~~~~~~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~ 368 (912)
.-.+++.+.....++++. +...++..+..+.+.. . ...+.+++.++++.++..+.-|
T Consensus 367 ----~~~l~~~l~~~l~~~~~~-------~r~~a~~~l~~i~~~~----~---~~~~~~~l~~il~~l~~~l~d~----- 423 (861)
T 2bpt_A 367 ----LEPVLEFVEQNITADNWR-------NREAAVMAFGSIMDGP----D---KVQRTYYVHQALPSILNLMNDQ----- 423 (861)
T ss_dssp ----HHHHHHHHHHHTTCSSHH-------HHHHHHHHHHHTSSSS----C---HHHHHHHHHHHHHHHHHGGGCS-----
T ss_pred ----HHHHHHHHHHHcCCCChh-------HHHHHHHHHHHHHcCC----C---HHHHHHHHHHHHHHHHHHcCCC-----
Confidence 113466666666665655 6666665554443211 0 1334567777887777766311
Q ss_pred CccccchHHHHHhHhHHHHHhhhHhcCc----HHHHHHHHHHhhc--CCCCccchhHHHHHHHHhhcccCC----CCcCc
Q psy6178 369 LLEEDHDFYDFRLKVSELVKDVVFIVGS----STCFRHMFNSLHE--NNVMWEQTEAALYIMQSVAKNVLP----EENDV 438 (912)
Q Consensus 369 ~~ee~~~f~~~R~~~~d~l~~~~~~l~~----~~~l~~l~~~l~~--~~~~w~~~Ea~L~~l~~iae~~~~----~~~~~ 438 (912)
-...|.....++..++..+++ ..++..+++.+.. .+. ++..+++..+++.+++.+.+ .-.++
T Consensus 424 -------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~ 495 (861)
T 2bpt_A 424 -------SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF 495 (861)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred -------cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 113444444455544444332 1233343333322 222 77788999999999988752 23467
Q ss_pred HHHHHHHHhcCCC--CchHHHHHHHHHHHHHHHHHHhcC-cCcHHHHHHHHHHhcC-----------------CCChHHH
Q psy6178 439 VPKVVEAILHLPP--STHIAVRYTSLLLLGELCEWIDKH-PHTLETILNFLLHCLQ-----------------QPGLASV 498 (912)
Q Consensus 439 l~~l~~~l~~~~~--~~~~~v~~t~~~~lg~y~~~l~~~-p~~l~~~l~~l~~~l~-----------------~~~v~~~ 498 (912)
++.+++.+.+... +.++.+|..++.++|......... ..++..+++.++..+. .+.++..
T Consensus 496 ~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 575 (861)
T 2bpt_A 496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN 575 (861)
T ss_dssp HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence 7777776544322 345789999999999988765432 2344455555554432 1236778
Q ss_pred HHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHH
Q psy6178 499 TANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISN-DAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIE 577 (912)
Q Consensus 499 A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~-~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~ 577 (912)
++.++..+++.++..+.|+++.++..+..+.+.. .. ..+...+.+++.++...+ ++..+++..++..++..+ +
T Consensus 576 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l----~ 649 (861)
T 2bpt_A 576 ILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLG-KGFEKYLETFSPYLLKAL----N 649 (861)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHh----c
Confidence 9999999999999899999999998887654431 22 457888888998887764 345566666666555444 2
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchh
Q psy6178 578 KQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKD 657 (912)
Q Consensus 578 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~ 657 (912)
.. +.. .....+..++.+++.++. .+.++...++|.+...+..-..+.++++.+..+++.++..+|..
T Consensus 650 ~~---~~~---vr~~a~~~l~~l~~~~~~-------~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~ 716 (861)
T 2bpt_A 650 QV---DSP---VSITAVGFIADISNSLEE-------DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD 716 (861)
T ss_dssp CT---TSH---HHHHHHHHHHHHHHHTGG-------GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGG
T ss_pred cc---cHH---HHHHHHHHHHHHHHHhch-------hccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhh
Confidence 21 111 123467778888887753 35677888888887776642235889999999999999999999
Q ss_pred hHHhHHHHHHHHHHHHhcCCC--------------cchHHhHHHHHHHhcC--ccchHHHHHHHHHHhHHHHHhhcCcCC
Q psy6178 658 FAHLLEPLVKQIVVLYSKHPH--------------SSFLYLGSILVDEYAT--SHCVSGLLDMVQAFLPPTYAILQEEDG 721 (912)
Q Consensus 658 ~~p~l~~l~~~l~~~~~~~~~--------------~~~L~~~~~lv~~~g~--~~~~~~l~~l~~~l~~~~~~~l~~~~~ 721 (912)
+.||++.+++.+.......+. .+.+...+.++...|. +...+.+..++. .....+. +
T Consensus 717 ~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~----~l~~~~~---d 789 (861)
T 2bpt_A 717 FIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQ----FIAQVAE---D 789 (861)
T ss_dssp GHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHH----HHHHHHH---C
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----HHHHHHc---C
Confidence 999999999988877653321 2345556666666653 112222222222 2212222 1
Q ss_pred CC-C-CCchHHHHHHHHHHHHHhC-Cccc
Q psy6178 722 LK-N-HPDTVDDLFRLCTRFLQRA-PIAF 747 (912)
Q Consensus 722 ~~-~-~pd~~~~~f~l~~~~l~~~-p~~~ 747 (912)
.. . +.++....+..+..+.... +..+
T Consensus 790 ~~~~~~~~vr~~a~~~l~~l~~~~~g~~~ 818 (861)
T 2bpt_A 790 PQLYSEDATSRAAVGLIGDIAAMFPDGSI 818 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCchH
Confidence 00 1 5678899999999999887 4443
No 17
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=99.56 E-value=1.2e-12 Score=134.03 Aligned_cols=224 Identities=13% Similarity=0.215 Sum_probs=193.3
Q ss_pred HHhHHHHHHHHHHHHhcC----CCcchHHhHHHHHHHhcCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHH
Q psy6178 659 AHLLEPLVKQIVVLYSKH----PHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFR 734 (912)
Q Consensus 659 ~p~l~~l~~~l~~~~~~~----~~~~~L~~~~~lv~~~g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~ 734 (912)
.-++||+++.++..|+++ +.+..|.+.+.++.++|+ .+.+.+..+++.+...|+.+++. ++.+.||.+..||.
T Consensus 68 ~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~-~i~~~vp~Il~~VFe~TL~MI~~--df~eyPehR~~Ff~ 144 (321)
T 1w9c_A 68 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGG-HITAEIPQIFDAVFECTLNMINK--DFEEYPEHRTNFFL 144 (321)
T ss_dssp HHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGG-GGGGGHHHHHHHHHHHHHHHHSS--TTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHhc--ccccChHHHHHHHH
Confidence 457899999999999765 457789999999999997 77778899999999999999996 88999999999999
Q ss_pred HHHHHHHhCCcccc--CchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhhccCCCCcccCccccCCCCchHHHHHHHH
Q psy6178 735 LCTRFLQRAPIAFL--TSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMK 812 (912)
Q Consensus 735 l~~~~l~~~p~~~l--~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (912)
|+..+..+|+..++ +++.+..++++.++|.+..+++....+++.+.+++....+. .+..+
T Consensus 145 LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~------------------~~~~~ 206 (321)
T 1w9c_A 145 LLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQE------------------EAAAQ 206 (321)
T ss_dssp HHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHC------------------HHHHH
T ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC------------------hHHHH
Confidence 99999999998874 66789999999999999999999999999999999765321 23677
Q ss_pred HHHHHhhHHHHHHHHHHccccCCCcchhhHHHHHHHHHHhC-----------------hHHHHHHHHHHHh-cCCCCCCC
Q psy6178 813 DIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVD-----------------RQVSNQWLQDTIS-QLPKNTPA 874 (912)
Q Consensus 813 ~~~~~~g~~lv~~ll~~~~~~~~~~~~~~~a~vL~~l~~~~-----------------~~~~~~wl~~~l~-~~p~~~~~ 874 (912)
++.+++...++..++..+....+.+....-+.+|..|...- ..-..+|+.+.|. .+|
T Consensus 207 ~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~Fp----- 281 (321)
T 1w9c_A 207 SFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFP----- 281 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHHcCccccccCCCCCcccHHHHHHHHHHHHHHhCC-----
Confidence 88899999999999999999999999999999999988421 1236788888775 688
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhh-hhHHHHHHHHHhhc
Q psy6178 875 GMNAATPEQLIEFHSQVTRSESA-YDVGQALKELSRLY 911 (912)
Q Consensus 875 ~~~~~t~~~k~~f~~~l~~~~~~-~~~~~~~~~F~~~c 911 (912)
++++++...|++.++...+. .+||.++|||...-
T Consensus 282 ---~l~~~qi~~fv~glf~~~~d~~~Fk~~lrDFLIqi 316 (321)
T 1w9c_A 282 ---HLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQI 316 (321)
T ss_dssp ---TSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 69999999999999988655 68999999998653
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.34 E-value=3.4e-09 Score=124.30 Aligned_cols=544 Identities=11% Similarity=0.069 Sum_probs=296.3
Q ss_pred ccHHHHHHHHHHhccCCChhhHHHHHHHHHHhhc--Ch-hHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCc
Q psy6178 5 PSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQK--SI-YAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPS 81 (912)
Q Consensus 5 ~~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~--s~-~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~ 81 (912)
.++..+..++..+-+ +|++.|..|-+-|...-. .+ ..|.-....|....+.++++|..++..|..-... +..
T Consensus 7 ~~~~~i~~l~~~l~s-~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~----~~~ 81 (588)
T 1b3u_A 7 DSLYPIAVLIDELRN-EDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTL----VGG 81 (588)
T ss_dssp TSSHHHHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGG----GTS
T ss_pred CCcCcHHHHHHHhhc-ccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc----cCc
Confidence 456778888888765 588999999888876433 22 3455443333322222478999998888632221 111
Q ss_pred ccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhcc---CcchHHHHHHHHhccc--chHHHHHHHHhhhhhhcc
Q psy6178 82 ESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS---AWEKPVVYIIEKLSHK--GSILALLEVLTVLPEEVN 156 (912)
Q Consensus 82 ~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~~---~W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~ee~~ 156 (912)
.. ....++..+..........+|...+.+|..++...+ .|+..++.+.....++ ........++..+.+.+.
T Consensus 82 ~~---~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 82 PE---YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp GG---GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred HH---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Confidence 11 112233333322212223789998989998887654 2555555555544433 223333444444443222
Q ss_pred cccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhc-----------------------CCcch
Q psy6178 157 VLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS-----------------------SGSLH 213 (912)
Q Consensus 157 ~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi-----------------------~~~l~ 213 (912)
. . ..+.++..+...+.+ ++..++..+++++..+. ++.++
T Consensus 159 ~-----~-----------~~~~l~~~l~~l~~d--~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr 220 (588)
T 1b3u_A 159 S-----A-----------VKAELRQYFRNLCSD--DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVR 220 (588)
T ss_dssp H-----H-----------HHHHHHHHHHHHHTC--SCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHH
T ss_pred H-----H-----------HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHH
Confidence 1 0 112344444444443 24566777776666543 01122
Q ss_pred HHHHHHHHhhchhhhccCCchHHHHHHHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchh
Q psy6178 214 DAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFS 293 (912)
Q Consensus 214 ~~a~~~l~~~l~~~~~~~~~~~l~~~l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~ 293 (912)
..|++++..+...... ......++ +.+.....+.+.......++.+..+++....... .
T Consensus 221 ~~a~~~l~~l~~~~~~----~~~~~~~~-------~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~----------~ 279 (588)
T 1b3u_A 221 LLAVEACVNIAQLLPQ----EDLEALVM-------PTLRQAAEDKSWRVRYMVADKFTELQKAVGPEIT----------K 279 (588)
T ss_dssp TTHHHHHHHHHHHSCH----HHHHHHTH-------HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHH----------H
T ss_pred HHHHHHHHHHHHhCCH----HHHHHHHH-------HHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccc----------h
Confidence 2233333333221110 01111111 2223333455555666666666666544211100 0
Q ss_pred hHHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCCCCCcccc
Q psy6178 294 IKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEED 373 (912)
Q Consensus 294 ~~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee~ 373 (912)
..+++.++.+..+++.+ +...+...+..+.+.+... .. ..++...+++.+...+. |.+
T Consensus 280 ~~l~~~l~~~l~d~~~~-------vr~~a~~~l~~~~~~~~~~--~~----~~~~~~~l~p~l~~~l~---d~~------ 337 (588)
T 1b3u_A 280 TDLVPAFQNLMKDCEAE-------VRAAASHKVKEFCENLSAD--CR----ENVIMSQILPCIKELVS---DAN------ 337 (588)
T ss_dssp HTHHHHHHHHHTCSSHH-------HHHHHHHHHHHHHHTSCTT--TH----HHHHHHTHHHHHHHHHT---CSC------
T ss_pred hHHHHHHHHHhCCCcHH-------HHHHHHHHHHHHHHHhChh--hh----hhHHHHHHHHHHHHHhc---CCC------
Confidence 12466667767666655 8888887777776653311 00 01223333433333321 111
Q ss_pred chHHHHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhc--CCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCC
Q psy6178 374 HDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHE--NNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPP 451 (912)
Q Consensus 374 ~~f~~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~--~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~ 451 (912)
...|..+...+..+...+|.+.....+.+.+.. .+.++..+++++.+++.+.+.+.. +...+.+++.+..+..
T Consensus 338 ---~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~lp~l~~~~~ 412 (588)
T 1b3u_A 338 ---QHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQLSQSLLPAIVELAE 412 (588)
T ss_dssp ---HHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhc
Confidence 146777777777777777765333333333332 456677788888888888877643 1223444444433334
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhh
Q psy6178 452 STHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLD 529 (912)
Q Consensus 452 ~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~ 529 (912)
+.+..+|.+++.+++.++..+... .+.+.+++.++..+.++. |+..|+.++..+++...... +.+.++..+..+.
T Consensus 413 d~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~ 489 (588)
T 1b3u_A 413 DAKWRVRLAIIEYMPLLAGQLGVE-FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMS 489 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCGG-GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTT
T ss_pred CCCchHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHh
Confidence 457899999999999999877642 234677888888888864 99999999999998876542 2344444444333
Q ss_pred hcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcC
Q psy6178 530 TLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIM 609 (912)
Q Consensus 530 ~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 609 (912)
.. -+...|...+++++.++..++.+. +...++.+ +...+... .. ......+..++.+++.++..
T Consensus 490 ~~-~~~~~R~~a~~~l~~l~~~~~~~~---~~~~~~~~----l~~~l~d~---~~---~Vr~~a~~~l~~l~~~~~~~-- 553 (588)
T 1b3u_A 490 GD-PNYLHRMTTLFCINVLSEVCGQDI---TTKHMLPT----VLRMAGDP---VA---NVRFNVAKSLQKIGPILDNS-- 553 (588)
T ss_dssp TC-SCHHHHHHHHHHHHHHHHHHHHHH---HHHHTHHH----HHHGGGCS---CH---HHHHHHHHHHHHHGGGSCHH--
T ss_pred hC-CCHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHH----HHhhCCCC---Cc---hHHHHHHHHHHHHHHHhchh--
Confidence 21 244568888899998887654322 22333332 22322221 11 11234577888888776531
Q ss_pred CCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHH
Q psy6178 610 SEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYA 650 (912)
Q Consensus 610 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~ 650 (912)
. ....+.|.+..+.. ..|.+|++.++.++..+
T Consensus 554 -----~--~~~~~~p~l~~l~~--d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 554 -----T--LQSEVKPILEKLTQ--DQDVDVKYFAQEALTVL 585 (588)
T ss_dssp -----H--HHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHT
T ss_pred -----h--hHHHHHHHHHHHcC--CCchhHHHHHHHHHHHh
Confidence 1 22566777777432 35789999999887653
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.31 E-value=9.9e-09 Score=131.22 Aligned_cols=578 Identities=12% Similarity=0.078 Sum_probs=322.2
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHHhcc
Q psy6178 58 LEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSH 137 (912)
Q Consensus 58 ~~vr~faa~~L~~ki~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~~~W~~~~~~l~~~~~~ 137 (912)
..+|+.|..-|.+.++++...++++....+...|++.+.. ..+ .+|+.-+.+|+.++...+.
T Consensus 20 ~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d---~~~-~vR~~A~~~L~~l~~~~~~-------------- 81 (1230)
T 1u6g_C 20 KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED---KNG-EVQNLAVKCLGPLVSKVKE-------------- 81 (1230)
T ss_dssp HHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC---SSH-HHHHHHHHHHHHHHTTSCH--------------
T ss_pred HhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC---CCH-HHHHHHHHHHHHHHHhCCH--------------
Confidence 8899999999999888876666655555666666666642 333 5666555555444432110
Q ss_pred cchHHHHHHHHhhhhhhcccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhcCCcchHHHH
Q psy6178 138 KGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAAT 217 (912)
Q Consensus 138 ~~~~~~~L~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi~~~l~~~a~ 217 (912)
...+.++..+...+.+. +..++..+..++.
T Consensus 82 ------------------------------------~~~~~i~~~Ll~~l~d~--~~~vR~~a~~~L~------------ 111 (1230)
T 1u6g_C 82 ------------------------------------YQVETIVDTLCTNMLSD--KEQLRDISSIGLK------------ 111 (1230)
T ss_dssp ------------------------------------HHHHHHHHHHHHHTTCS--SSHHHHHHHHHHH------------
T ss_pred ------------------------------------HHHHHHHHHHHHHhcCC--cHHHHHHHHHHHH------------
Confidence 01122333333333332 2344555544443
Q ss_pred HHHHhhchhhhcc---C-CchHHHHHHHHHHhchHHHHHHHhc-CCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcch
Q psy6178 218 DCVSALLPILEYN---N-NFDAVNLNVFTCILSLEEQFHMAVA-HEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPF 292 (912)
Q Consensus 218 ~~l~~~l~~~~~~---~-~~~~l~~~l~~~v~~l~~~~~~~~~-~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~ 292 (912)
.+....... . ........++|. +...+. .++.+.......++.++++.....+.. .
T Consensus 112 ----~i~~~l~~~~~~~~~~~~~~~~llp~-------L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--------~ 172 (1230)
T 1u6g_C 112 ----TVIGELPPASSGSALAANVCKKITGR-------LTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--------F 172 (1230)
T ss_dssp ----HHHHHCC-----CCTHHHHHHHHHHH-------HHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--------T
T ss_pred ----HHHHhCCCcccccchHHHHHHHHHHH-------HHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--------H
Confidence 222211110 0 001223334443 233444 355666666666666665432211111 1
Q ss_pred hhHHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCCCCCccc
Q psy6178 293 SIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEE 372 (912)
Q Consensus 293 ~~~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee 372 (912)
.-.+++.++....+++.. +...++.-...+..... + ..+..++..+++.+.. +.+ +
T Consensus 173 ~~~ll~~l~~~L~~~~~~-------vR~~a~~al~~l~~~~~----~---~~~~~~l~~l~~~L~~----~~~--~---- 228 (1230)
T 1u6g_C 173 HPSILTCLLPQLTSPRLA-------VRKRTIIALGHLVMSCG----N---IVFVDLIEHLLSELSK----NDS--M---- 228 (1230)
T ss_dssp HHHHHHHHGGGGGCSSHH-------HHHHHHHHHHHHTTTC-----------CTTHHHHHHHHHHH----TCS--S----
T ss_pred HHHHHHHHHHHHcCCcHH-------HHHHHHHHHHHHHHhcC----H---HHHHHHHHHHHHHhcc----CCc--h----
Confidence 124677777777766555 77777665444443221 1 1233444444443322 111 0
Q ss_pred cchHHHHHhHhHHHHHhhhHhcCc------HHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHH
Q psy6178 373 DHDFYDFRLKVSELVKDVVFIVGS------STCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAI 446 (912)
Q Consensus 373 ~~~f~~~R~~~~d~l~~~~~~l~~------~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l 446 (912)
..|..+.+.+..++..+|. +.+++.+...+. +.+...+++++.+++.+++.++..-.++++.+++.+
T Consensus 229 -----~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~--d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~l 301 (1230)
T 1u6g_C 229 -----STTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN--VDDDELREYCIQAFESFVRRCPKEVYPHVSTIINIC 301 (1230)
T ss_dssp -----CSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHH
Confidence 1233344445444444332 124555555553 445666789999999999987655556788888776
Q ss_pred hcCCC-------------------------------------CchHHHHHHHHHHHHHHHHHHhcCcC----cHHHHHHH
Q psy6178 447 LHLPP-------------------------------------STHIAVRYTSLLLLGELCEWIDKHPH----TLETILNF 485 (912)
Q Consensus 447 ~~~~~-------------------------------------~~~~~v~~t~~~~lg~y~~~l~~~p~----~l~~~l~~ 485 (912)
.+.-. +....+|.+++.+++.++.- .|+ +++.+++.
T Consensus 302 l~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~---~~~~~~~~~~~l~~~ 378 (1230)
T 1u6g_C 302 LKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST---RHEMLPEFYKTVSPA 378 (1230)
T ss_dssp TTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTT---CCTTHHHHHTTTHHH
T ss_pred HHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHH
Confidence 54321 01235799999999988862 233 44555666
Q ss_pred HHHhcCCC--ChHHHHHHHHHHHHHHh-------------------hhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHH
Q psy6178 486 LLHCLQQP--GLASVTANALQSISTAC-------------------CTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKG 544 (912)
Q Consensus 486 l~~~l~~~--~v~~~A~~al~~l~~~~-------------------~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~ea 544 (912)
+...+.++ +++..|..++..++... ...+.++++.++..+...... -....|...+.+
T Consensus 379 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~-~~~~vr~~~~~~ 457 (1230)
T 1u6g_C 379 LISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE-KSVKTRQCCFNM 457 (1230)
T ss_dssp HHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTC-SCHHHHHHHHHH
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhcc-CCHHHHHHHHHH
Confidence 66666654 49999999999998753 345566777777776554332 244567888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhH
Q psy6178 545 VAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWP 624 (912)
Q Consensus 545 i~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 624 (912)
++.++...+. ...+++..+ +..+...+.... . ........+..++.+++..++ ..+.+++..++|
T Consensus 458 L~~l~~~~~~-~l~~~l~~l----l~~l~~~L~d~~---~-~~~v~~~a~~~l~~~~~~~~~------~~~~~~l~~llp 522 (1230)
T 1u6g_C 458 LTELVNVLPG-ALTQHIPVL----VPGIIFSLNDKS---S-SSNLKIDALSCLYVILCNHSP------QVFHPHVQALVP 522 (1230)
T ss_dssp HHHHHHHSTT-TTGGGHHHH----HHHHHHHTTCSS---S-CHHHHHHHHHHHHHHHHSSCG------GGGHHHHTTTHH
T ss_pred HHHHHHHchh-hhHHHHHHH----HHHHHHHHcCCC---C-cchHHHHHHHHHHHHHHhCCH------HHHHhHHHHHHH
Confidence 9999887653 222233333 333333333221 1 011123456667776665543 235677888888
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHHhch-------hhHHhHHHHHHHHHHHHhcCC-C----cchHHhHHHHHHHh
Q psy6178 625 VLSKTCETYQQDARVMEHSSRCLRYAIRCVGK-------DFAHLLEPLVKQIVVLYSKHP-H----SSFLYLGSILVDEY 692 (912)
Q Consensus 625 ~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~-------~~~p~l~~l~~~l~~~~~~~~-~----~~~L~~~~~lv~~~ 692 (912)
.+...+.. .+..++..+..++..+++.+|. .+.||++.+++.++..+.... . ...++.++.++...
T Consensus 523 ~L~~~l~d--~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 523 PVVACVGD--PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHHHHTC--SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcc--cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 87765542 3566777888899999988887 789999999999988875322 1 23456788888888
Q ss_pred cCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCccccCchhhHHHHHHHHHhcccCCchhH
Q psy6178 693 ATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREAN 772 (912)
Q Consensus 693 g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~~~l~~i~~~~~~~l~~~~~~~~ 772 (912)
|+ ...+.+..++.. ....+.+ ++......+.+..+... +...-..+.+..++......+..+++..-
T Consensus 601 g~-~~~~~~~~~l~~----L~~~l~~-------e~~r~~~~~al~~i~~~-~~~~~~~~~~~~i~~~L~~~l~~~~~~~r 667 (1230)
T 1u6g_C 601 GD-NLGSDLPNTLQI----FLERLKN-------EITRLTTVKALTLIAGS-PLKIDLRPVLGEGVPILASFLRKNQRALK 667 (1230)
T ss_dssp GG-GCCTHHHHHHHH----HHHHTTS-------SSHHHHHHHHHHHHTTC-SSCCCCHHHHHHHHHHHHHHTTSCCHHHH
T ss_pred Cc-hhhhhHHHHHHH----HHHHhcc-------chhHHHHHHHHHHHHhC-ccccchHHHHHHHHHHHHHHHHhCCHHHH
Confidence 86 333333333332 2222322 23444455555544421 11111134566777766666776677666
Q ss_pred HHHHHHHHHHhhccC
Q psy6178 773 STVMKFFYDLIHNNR 787 (912)
Q Consensus 773 ~~~~~fl~~li~~~~ 787 (912)
.+++..+..++....
T Consensus 668 ~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 668 LGTLSALDILIKNYS 682 (1230)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccc
Confidence 777888877776543
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.17 E-value=1.7e-08 Score=118.25 Aligned_cols=457 Identities=13% Similarity=0.104 Sum_probs=246.4
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHhhcC-h-h-HH----HHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCc
Q psy6178 9 TVYAVVHTLYLNPNKTEKEKASQWLHQLQKS-I-Y-AW----KIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPS 81 (912)
Q Consensus 9 ~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s-~-~-aw----~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~ 81 (912)
.+..++..+....++..|+.|-+.|.++-.. + + .+ ++...+..+ ++ ..+|..|+.++..-.. .+++
T Consensus 87 ~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~-~~--~~~R~~a~~~l~~~~~----~~~~ 159 (588)
T 1b3u_A 87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG-DW--FTSRTSACGLFSVCYP----RVSS 159 (588)
T ss_dssp GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTC-SS--HHHHHHHGGGHHHHTT----TSCH
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcC-CC--cHHHHHHHHHHHHHHH----hcCH
Confidence 3444555555556778888888888776553 1 1 12 233344443 33 6788888877765433 2333
Q ss_pred ccHHHHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhcc---CcchHHHHHHHHhccc--chHHHHHHHHhhhhhhc
Q psy6178 82 ESHVSLRDSLIEHLCRTND-TSGKNIITQLALALADLALQMS---AWEKPVVYIIEKLSHK--GSILALLEVLTVLPEEV 155 (912)
Q Consensus 82 ~~~~~lk~~Ll~~l~~~~~-~~~~~v~~kl~~~la~l~~~~~---~W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~ee~ 155 (912)
. .++.++..+..... ..+ .||...+.+++.++...+ .++..++.+...++.+ ......+..|..+.+.+
T Consensus 160 ~----~~~~l~~~l~~l~~d~~~-~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 234 (588)
T 1b3u_A 160 A----VKAELRQYFRNLCSDDTP-MVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234 (588)
T ss_dssp H----HHHHHHHHHHHHHTCSCH-HHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS
T ss_pred H----HHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC
Confidence 3 34444444433222 334 799999999998887654 2467777777776554 22233444444444332
Q ss_pred ccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhc-----------------------CCcc
Q psy6178 156 NVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS-----------------------SGSL 212 (912)
Q Consensus 156 ~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi-----------------------~~~l 212 (912)
.+ + ...+.++.++...+.+. +..++..+++++.... ++.+
T Consensus 235 ~~-----~----------~~~~~~~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 297 (588)
T 1b3u_A 235 PQ-----E----------DLEALVMPTLRQAAEDK--SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297 (588)
T ss_dssp CH-----H----------HHHHHTHHHHHHHHTCS--SHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHH
T ss_pred CH-----H----------HHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHH
Confidence 21 0 01112222222222221 2333444443333221 1123
Q ss_pred hHHHHHHHHhhchhhhccCCchHHHHHHHHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcch
Q psy6178 213 HDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPF 292 (912)
Q Consensus 213 ~~~a~~~l~~~l~~~~~~~~~~~l~~~l~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~ 292 (912)
+.+|+.++..+................++|. +...+.+.+.......+..+..++........
T Consensus 298 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~-------l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~---------- 360 (588)
T 1b3u_A 298 RAAASHKVKEFCENLSADCRENVIMSQILPC-------IKELVSDANQHVKSALASVIMGLSPILGKDNT---------- 360 (588)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHHHHTHHHH-------HHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHH----------
T ss_pred HHHHHHHHHHHHHHhChhhhhhHHHHHHHHH-------HHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHH----------
Confidence 3334444444433221100000122222232 22233444555544555544444432211000
Q ss_pred hhHHHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCCCCCccc
Q psy6178 293 SIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEE 372 (912)
Q Consensus 293 ~~~~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee 372 (912)
.-.+++.++.+..+++.+ |...++..+..+.+.+.. + .+...+++.+...+ .|.+|
T Consensus 361 ~~~l~p~l~~~l~d~~~~-------Vr~~a~~~l~~l~~~~~~---~-------~~~~~~lp~l~~~~---~d~~~---- 416 (588)
T 1b3u_A 361 IEHLLPLFLAQLKDECPE-------VRLNIISNLDCVNEVIGI---R-------QLSQSLLPAIVELA---EDAKW---- 416 (588)
T ss_dssp HHHTHHHHHHHHTCSCHH-------HHHHHHTTCHHHHHHSCH---H-------HHHHHHHHHHHHHH---TCSSH----
T ss_pred HHHHHHHHHHHhCCCchH-------HHHHHHHHHHHHHHhcCH---H-------HHHHHHHHHHHHHh---cCCCc----
Confidence 012455566666554444 888888877777654321 1 11122333333322 12112
Q ss_pred cchHHHHHhHhHHHHHhhhHhcCcH----HHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhc
Q psy6178 373 DHDFYDFRLKVSELVKDVVFIVGSS----TCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILH 448 (912)
Q Consensus 373 ~~~f~~~R~~~~d~l~~~~~~l~~~----~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~ 448 (912)
..|..+.+.+..+...+|.+ .+++.+...+ .+.+|..+++++.+++.+++.+.+ ...++.+++.+..
T Consensus 417 -----~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~ 487 (588)
T 1b3u_A 417 -----RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL--VDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLA 487 (588)
T ss_dssp -----HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGG--GCSSHHHHHHHHHHHHHHHHHHCH--HHHHHHTHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHH
Confidence 35677777777777766654 2333344433 466788889999999999988754 2235566666655
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHH
Q psy6178 449 LPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQP--GLASVTANALQSISTACCTHMVGHFNGLLQIIQ 526 (912)
Q Consensus 449 ~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~--~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~ 526 (912)
+..+++..+|.+++.++|.+++.+... .+++.+++.+...+.++ +|+..++.++..++........+ +.++..+.
T Consensus 488 ~~~~~~~~~R~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~~~p~l~ 564 (588)
T 1b3u_A 488 MSGDPNYLHRMTTLFCINVLSEVCGQD-ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ--SEVKPILE 564 (588)
T ss_dssp TTTCSCHHHHHHHHHHHHHHHHHHHHH-HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH--HHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhH--HHHHHHHH
Confidence 555567899999999999999887643 36778888888888886 49999999999998766544321 34444444
Q ss_pred HhhhcCCChHHHHHHHHHHHHH
Q psy6178 527 CLDTLSISNDAAIGLLKGVAII 548 (912)
Q Consensus 527 ~l~~~~~~~~~~~~l~eai~~v 548 (912)
.+.+ .-+.+.|....++++.+
T Consensus 565 ~l~~-d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 565 KLTQ-DQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHTT-CSSHHHHHHHHHHHHHT
T ss_pred HHcC-CCchhHHHHHHHHHHHh
Confidence 4332 23455677787777764
No 21
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.60 E-value=1.5e-06 Score=88.48 Aligned_cols=198 Identities=12% Similarity=0.119 Sum_probs=138.2
Q ss_pred CCCCccchhHHHHHHHH-hhcccCCCC--cCcHHHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHHHh-cC-c-CcHHHH
Q psy6178 410 NNVMWEQTEAALYIMQS-VAKNVLPEE--NDVVPKVVEAILHLP-PSTHIAVRYTSLLLLGELCEWID-KH-P-HTLETI 482 (912)
Q Consensus 410 ~~~~w~~~Ea~L~~l~~-iae~~~~~~--~~~l~~l~~~l~~~~-~~~~~~v~~t~~~~lg~y~~~l~-~~-p-~~l~~~ 482 (912)
.+.+|..+.+++-.+.. +.++++.-. ......++..+.+.- .+.++.|+..++.++|.+++.+. .. . .|...+
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 46789999999999999 987765322 333345565544433 35689999999999999999997 33 4 688999
Q ss_pred HHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhh-hcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHH
Q psy6178 483 LNFLLHCLQQPG--LASVTANALQSISTACCTHMV-GHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISE 559 (912)
Q Consensus 483 l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~-~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~ 559 (912)
++.++..+.++. |+.+|..|+..+|+.+.+... +|++.+++.+....+.. ....|...+..++.++...+
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~------ 178 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEK------ 178 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcC------
Confidence 999999999864 899999999999999865221 23777777665443321 33344444444444333221
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHH-HhHhHHHHHHHHhhccchh
Q psy6178 560 ALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVI-TELWPVLSKTCETYQQDAR 638 (912)
Q Consensus 560 ~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ 638 (912)
.. +..+.+.+ ..++|.+...+. ..+++
T Consensus 179 ----------------------------------------------~~----~~~l~~~l~~~iip~l~~~l~--D~~~~ 206 (249)
T 2qk1_A 179 ----------------------------------------------DG----YSTLQRYLKDEVVPIVIQIVN--DTQPA 206 (249)
T ss_dssp ----------------------------------------------SC----SHHHHHHHTTTHHHHHHHHHT--CSSHH
T ss_pred ----------------------------------------------Cc----chhHHHHHHHHHHHHHHHHhc--CCCHH
Confidence 00 01123455 566676666653 45788
Q ss_pred HHHHHHHHHHHHHHHhchh-hHHhHHHHH
Q psy6178 639 VMEHSSRCLRYAIRCVGKD-FAHLLEPLV 666 (912)
Q Consensus 639 v~e~~~~~~~~~~~~l~~~-~~p~l~~l~ 666 (912)
|+++++.++..+.+.+|+. +.||++.+-
T Consensus 207 VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld 235 (249)
T 2qk1_A 207 IRTIGFESFAILIKIFGMNTFVKTLEHLD 235 (249)
T ss_dssp HHHHHHHHHHHHHHHHCSGGGHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHh
Confidence 9999999999999999975 999998764
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.40 E-value=0.00017 Score=83.76 Aligned_cols=452 Identities=11% Similarity=0.090 Sum_probs=222.9
Q ss_pred ccCCChhhHHHHHHHHHHhhc-ChhHHH-HHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHH
Q psy6178 18 YLNPNKTEKEKASQWLHQLQK-SIYAWK-IADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHL 95 (912)
Q Consensus 18 ~~~~~~~~~~~A~~~L~~~q~-s~~aw~-~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~~lk~~Ll~~l 95 (912)
.+++|...|+.+.-++..+-+ .|+--. +...+...-.+.++.+|-.|..+|-+-. .++....+-..+...+
T Consensus 58 ~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-------~~~~~~~l~~~l~~~L 130 (591)
T 2vgl_B 58 MQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-------VDKITEYLCEPLRKCL 130 (591)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-------SGGGHHHHHHHHHHHS
T ss_pred hCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHc
Confidence 444566777777777766544 344322 2233322222223677777765554221 2333444444444444
Q ss_pred HHhccCCChhHHHHHHHHHHHHHhhcc-Ccc--hHHHHHHHHhccc--chHHHHHHHHhhhhhhcccc---cCChhhHHH
Q psy6178 96 CRTNDTSGKNIITQLALALADLALQMS-AWE--KPVVYIIEKLSHK--GSILALLEVLTVLPEEVNVL---KLGKNRREE 167 (912)
Q Consensus 96 ~~~~~~~~~~v~~kl~~~la~l~~~~~-~W~--~~~~~l~~~~~~~--~~~~~~L~iL~~l~ee~~~~---~~~~~~r~~ 167 (912)
.. .+| +||++-+.++..++...+ .++ ++++.+...+... ......+..|..+.++-.+. .+....-..
T Consensus 131 ~d---~~~-~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~ 206 (591)
T 2vgl_B 131 KD---EDP-YVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINK 206 (591)
T ss_dssp SC---SCH-HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHH
T ss_pred CC---CCh-HHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHH
Confidence 32 444 899999999998887666 465 4778888888654 22344555666665542211 111110111
Q ss_pred HHHHHHhhhh----HHHHHHHHhhhcCCCChHHHHHHHHHHHhhc---CCcchHHHHHHHHhhchhhhccCCchHHHHHH
Q psy6178 168 FEEELKAAGP----IVIEFLKTCQANCGDNVSLQTKVLKCFTSWS---SGSLHDAATDCVSALLPILEYNNNFDAVNLNV 240 (912)
Q Consensus 168 ~~~~l~~~~~----~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi---~~~l~~~a~~~l~~~l~~~~~~~~~~~l~~~l 240 (912)
+-..+....+ .+++++..... .+......++..+..++ ++.+.-.|+.++..+....... .+.++.+
T Consensus 207 Ll~~l~~~~~~~q~~il~~l~~l~~---~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~---~~~~~~~ 280 (591)
T 2vgl_B 207 LLTALNECTEWGQIFILDCLSNYNP---KDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKD---SDYYNML 280 (591)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHTSCC---CSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBT---TBSHHHH
T ss_pred HHHcCCCCCchHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCC---HHHHHHH
Confidence 1111211111 12222221110 12223344555555444 3444555666666554321111 1222222
Q ss_pred HHHHhchHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHhhhcCCCCcccccCccchh
Q psy6178 241 FTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVAS 320 (912)
Q Consensus 241 ~~~v~~l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~e~vs~ 320 (912)
.+.+ .+.+.. +...|.+......+.+..++..++..+.. . +..+ .|..+.+.. |..
T Consensus 281 ~~~~---~~~L~~-L~~~d~~vr~~aL~~l~~i~~~~p~~~~~---------~---~~~~-~~~~~d~~~-------Ir~ 336 (591)
T 2vgl_B 281 LKKL---APPLVT-LLSGEPEVQYVALRNINLIVQKRPEILKQ---------E---IKVF-FVKYNDPIY-------VKL 336 (591)
T ss_dssp HHHT---HHHHHH-HTTSCHHHHHHHHHHHHHHHHHCCSTTTT---------C---TTTT-SCCTTSCHH-------HHH
T ss_pred HHHH---HHHHHH-HhcCCccHHHHHHHHHHHHHHhChHHHHH---------H---HHhh-eeccCChHH-------HHH
Confidence 2221 112221 22345554444444444433322111100 0 1111 122222333 777
Q ss_pred hhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCCCCCccccchHHHHHhHhHHHHHhhhHhcCc--HH
Q psy6178 321 ITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGS--ST 398 (912)
Q Consensus 321 ~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee~~~f~~~R~~~~d~l~~~~~~l~~--~~ 398 (912)
.+++.|..+... . -. ..++..+...+. +. ++ ++|+.+...+..++...++ +.
T Consensus 337 ~al~~L~~l~~~------~----nv----~~iv~~L~~~l~---~~------d~---~~r~~~v~aI~~la~~~~~~~~~ 390 (591)
T 2vgl_B 337 EKLDIMIRLASQ------A----NI----AQVLAELKEYAT---EV------DV---DFVRKAVRAIGRCAIKVEQSAER 390 (591)
T ss_dssp HHHHHHHHTCCS------S----TH----HHHHHHHHHHTT---SS------CH---HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCh------h----hH----HHHHHHHHHHHh---cC------CH---HHHHHHHHHHHHHHHhChhHHHH
Confidence 788777664321 1 11 223333333322 11 11 4677776667666655432 34
Q ss_pred HHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCc
Q psy6178 399 CFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHT 478 (912)
Q Consensus 399 ~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~ 478 (912)
++..+.+.+. ...+|...|+ +.+++.+....+......+..+...+.. ...|.++.+++|++|.|++++..
T Consensus 391 ~v~~Ll~ll~-~~~~~v~~e~-i~~l~~ii~~~p~~~~~~v~~L~~~l~~---~~~~~~~~~~~wilGey~~~~~~---- 461 (591)
T 2vgl_B 391 CVSTLLDLIQ-TKVNYVVQEA-IVVIRDIFRKYPNKYESIIATLCENLDS---LDEPDARAAMIWIVGEYAERIDN---- 461 (591)
T ss_dssp HHHHHHHHHH-TCCHHHHHHH-HHHHHHHHHHSCSSCCTTHHHHHHTTTT---CCSHHHHHHHHHHHHTTCTTCTT----
T ss_pred HHHHHHHHHc-ccchHHHHHH-HHHHHHHHHHCcchHHHHHHHHHHHHHh---ccCHHHHHHHHHHHHcccccccC----
Confidence 6666766665 3345555555 5677777776654445567776665432 34688899999999999988753
Q ss_pred HHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q psy6178 479 LETILNFLLHCLQQ--PGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAII 548 (912)
Q Consensus 479 l~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~v 548 (912)
.+.++..++..+.+ +.++..+..|+.++...+.....+.+..+++.+. ....+.+.|.+.++....+
T Consensus 462 ~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~---~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 462 ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLAT---QDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHH---TTCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh---hcCCChHHHHHHHHHHHHH
Confidence 34666666665554 3488899999999987654332233333333321 1123556677776665443
No 23
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.23 E-value=0.0033 Score=73.21 Aligned_cols=454 Identities=12% Similarity=0.080 Sum_probs=214.3
Q ss_pred CChhhHHHHHHHHHHhhc-ChhH-HHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHHHh
Q psy6178 21 PNKTEKEKASQWLHQLQK-SIYA-WKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRT 98 (912)
Q Consensus 21 ~~~~~~~~A~~~L~~~q~-s~~a-w~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~~lk~~Ll~~l~~~ 98 (912)
+|-+.|+-..-++..+-+ .++- -..+..+.+.-.+.++.+|-.|..+|-+-- +++-...+-..+...+..
T Consensus 82 ~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~~l~~~L~~- 153 (618)
T 1w63_A 82 QKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLAGEVEKLLKT- 153 (618)
T ss_dssp SSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHS-
T ss_pred CchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHcC-
Confidence 455555555555555443 3332 222222222111122566666666665322 112222333333333332
Q ss_pred ccCCChhHHHHHHHHHHHHHhhccC-cchHHHHHHHHhccc--chHHHHHHHHhhhhhhcccccCChhhHHHHHHHHHhh
Q psy6178 99 NDTSGKNIITQLALALADLALQMSA-WEKPVVYIIEKLSHK--GSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAA 175 (912)
Q Consensus 99 ~~~~~~~v~~kl~~~la~l~~~~~~-W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~ 175 (912)
.+| +||++-+.++..++...|+ -+++++.+...+... ......+..|..+.+.- ......+...
T Consensus 154 --~~~-~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~----------~~~~~~~~~~ 220 (618)
T 1w63_A 154 --SNS-YLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS----------PDMLAHFRKL 220 (618)
T ss_dssp --CCH-HHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH----------HHHHHHHHTT
T ss_pred --CCH-HHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC----------hHHHHHHHHH
Confidence 444 8999988888888876541 223333344444333 12233444555444320 0113345556
Q ss_pred hhHHHHHHHHhhhcC---------CCChHHHHHHHHHHHhhc--CCcchHHHHHHHHhhchhhhccCC-chHHHHHHHHH
Q psy6178 176 GPIVIEFLKTCQANC---------GDNVSLQTKVLKCFTSWS--SGSLHDAATDCVSALLPILEYNNN-FDAVNLNVFTC 243 (912)
Q Consensus 176 ~~~vl~~l~~~l~~~---------~~~~~~~~~~l~~l~sWi--~~~l~~~a~~~l~~~l~~~~~~~~-~~~l~~~l~~~ 243 (912)
.+.++..|.++.... ..++-.+..+++++.... ++...+...+.+..++........ ....+......
T Consensus 221 v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~ 300 (618)
T 1w63_A 221 VPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLT 300 (618)
T ss_dssp HHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 677777777654321 013344556666666444 111111222233333221100000 00111111110
Q ss_pred Hhc----------hHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHhhhcCCCCcccc
Q psy6178 244 ILS----------LEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATN 313 (912)
Q Consensus 244 v~~----------l~~~~~~~~~~~d~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 313 (912)
++. ..+.+...+.+.|.+........+..++...+..+.+ ....++.|..+++.+
T Consensus 301 i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~------------~~~~i~~~l~d~d~~--- 365 (618)
T 1w63_A 301 IMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQR------------HRSTIVDCLKDLDVS--- 365 (618)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGG------------GHHHHHHGGGSSCHH---
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHH------------HHHHHHHHccCCChh---
Confidence 000 0112222234445444444444455555544433322 133455666666666
Q ss_pred cCccchhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCCCCCccccchHHHHHhHhHHHHHhhhHh
Q psy6178 314 LGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFI 393 (912)
Q Consensus 314 ~~e~vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee~~~f~~~R~~~~d~l~~~~~~ 393 (912)
|...+++-.+.+... .-..+++..++. .+. + .. .++|..+...+..++..
T Consensus 366 ----Ir~~alelL~~l~~~----------~nv~~iv~eL~~----~l~---~------~d---~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 366 ----IKRRAMELSFALVNG----------NNIRGMMKELLY----FLD---S------CE---PEFKADCASGIFLAAEK 415 (618)
T ss_dssp ----HHHHHHHHHHHHCCS----------SSTHHHHHHHHH----HHH---H------CC---HHHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHHHccc----------ccHHHHHHHHHH----HHH---h------CC---HHHHHHHHHHHHHHHHH
Confidence 788888755544321 112233333332 221 0 01 25777777777777776
Q ss_pred cCc--HHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Q psy6178 394 VGS--STCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEW 471 (912)
Q Consensus 394 l~~--~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~ 471 (912)
+.+ ..++..+.+.+...+ ++...| ++..+..+....++-....+..++..+..... +..+...++|++|.|++.
T Consensus 416 ~~~~~~~~v~~ll~lL~~~~-~~v~~~-~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~--~~~~~~~~~wilGEy~~~ 491 (618)
T 1w63_A 416 YAPSKRWHIDTIMRVLTTAG-SYVRDD-AVPNLIQLITNSVEMHAYTVQRLYKAILGDYS--QQPLVQVAAWCIGEYGDL 491 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHTG-GGSCSS-HHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCS--CSHHHHHHHHHHHHHHHH
T ss_pred hCccHHHHHHHHHHHHHhcc-chhHHH-HHHHHHHHHhcChhHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHhhhHHH
Confidence 543 246777776665432 333333 34455555554433233456677777654221 233445789999999998
Q ss_pred Hhc-----------CcCcHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHH
Q psy6178 472 IDK-----------HPHTLETILNFLLHC-LQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAI 539 (912)
Q Consensus 472 l~~-----------~p~~l~~~l~~l~~~-l~~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~ 539 (912)
+.. +|..+..++..++.. ..++.++..+..|+.++...+.. ..+.+..+ +..... ..+.+.|.
T Consensus 492 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~-~~~~l~~~---L~~~~~-~~d~evrd 566 (618)
T 1w63_A 492 LVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC-TVNRIKKV---VSIYGS-SIDVELQQ 566 (618)
T ss_dssp HTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS-CHHHHHHH---HHHHTT-CSCHHHHH
T ss_pred hcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc-hHHHHHHH---HHHhcC-CCCHHHHH
Confidence 854 233445555555543 23456899999999998876532 22222333 332222 34566677
Q ss_pred HHHHHHHHHH
Q psy6178 540 GLLKGVAIIV 549 (912)
Q Consensus 540 ~l~eai~~vi 549 (912)
+..+....+.
T Consensus 567 RA~~y~~ll~ 576 (618)
T 1w63_A 567 RAVEYNALFK 576 (618)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7776555543
No 24
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.23 E-value=4.3e-05 Score=86.07 Aligned_cols=279 Identities=12% Similarity=0.072 Sum_probs=164.0
Q ss_pred hHHHHHhhhHhcCc----HHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-CcCcHHHHHHHHhcCCCCc--hH
Q psy6178 383 VSELVKDVVFIVGS----STCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-ENDVVPKVVEAILHLPPST--HI 455 (912)
Q Consensus 383 ~~d~l~~~~~~l~~----~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~~~~~~--~~ 455 (912)
++.++..+....++ +.+++.+.+.+.++..++..+|+++.+++.+.+...+. ...+++.+++.+.+.-.+. ++
T Consensus 109 ~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~ 188 (462)
T 1ibr_B 109 ASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN 188 (462)
T ss_dssp HHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCH
Confidence 44455554443222 13667777666532116788999999999999876322 3456667776654433333 68
Q ss_pred HHHHHHHHHHHHHHHHHhcCcC---cHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhhhhhhcHH-HHHHHHHHhh
Q psy6178 456 AVRYTSLLLLGELCEWIDKHPH---TLETILNFLLHCLQQP--GLASVTANALQSISTACCTHMVGHFN-GLLQIIQCLD 529 (912)
Q Consensus 456 ~v~~t~~~~lg~y~~~l~~~p~---~l~~~l~~l~~~l~~~--~v~~~A~~al~~l~~~~~~~L~~~~~-~ll~~~~~l~ 529 (912)
.||..++.+++....++..+.+ ....+++.+...+.++ +++..++.+|..+++.+...+.+|++ .++..+....
T Consensus 189 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~ 268 (462)
T 1ibr_B 189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM 268 (462)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999886655543321 1123455555555554 48899999999999999888888888 8887665433
Q ss_pred hcCCChHHHHHHHHHHHHHHhcCCH----------------HHHHHHHHHHHHHhHHHHHHHHHhcCC-CCCCCCCChHH
Q psy6178 530 TLSISNDAAIGLLKGVAIIVSDMPQ----------------DQISEALKQLCLVQVKPLCELIEKQIK-PEKNKKSDPVI 592 (912)
Q Consensus 530 ~~~~~~~~~~~l~eai~~vi~~~p~----------------~~~~~~l~~l~~p~~~~l~~~~~~~~~-~~~~~~~~~~~ 592 (912)
.. ...+.+...++.++.++..... ......+...+..++..+-+.+..... .+++.......
T Consensus 269 ~~-~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~ 347 (462)
T 1ibr_B 269 KS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA 347 (462)
T ss_dssp HC-SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHH
T ss_pred cC-CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHH
Confidence 32 3455677788877777653200 000011222223333333333332210 01111111234
Q ss_pred HHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhc-hhhHHhHHHHHHHHHH
Q psy6178 593 WLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVG-KDFAHLLEPLVKQIVV 671 (912)
Q Consensus 593 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~-~~~~p~l~~l~~~l~~ 671 (912)
..++++.+.+.++. .++..++|.+...+. ..+..+++.++.+++.+..... ..+.++++.+++.++.
T Consensus 348 a~~~L~~l~~~~~~----------~~~~~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~ 415 (462)
T 1ibr_B 348 AGVCLMLLATCCED----------DIVPHVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE 415 (462)
T ss_dssp HHHHHHHHHHHTTT----------THHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHH
T ss_pred HHHHHHHHHHhccH----------HHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 56667777666542 133556666665544 3578899999999999877544 3356677777776666
Q ss_pred HHh
Q psy6178 672 LYS 674 (912)
Q Consensus 672 ~~~ 674 (912)
.+.
T Consensus 416 ~l~ 418 (462)
T 1ibr_B 416 LMK 418 (462)
T ss_dssp GGG
T ss_pred Hhc
Confidence 553
No 25
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.02 E-value=0.0013 Score=81.44 Aligned_cols=300 Identities=9% Similarity=0.001 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcC-------CCChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhh
Q psy6178 457 VRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQ-------QPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLD 529 (912)
Q Consensus 457 v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~-------~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~ 529 (912)
.|..+..++...+.-+. .+.++.+++++-..+. +...+.+|..++..+++.|.....++++.+++.+..+.
T Consensus 437 ~R~~~~~~l~~~~~~~~--~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~ 514 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLN--DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIP 514 (971)
T ss_dssp HHHHHHHHHHHHHTTCT--THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcC
Confidence 55666666655443221 3566777777766553 22378899999999999888777788888888555444
Q ss_pred hcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcC
Q psy6178 530 TLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIM 609 (912)
Q Consensus 530 ~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 609 (912)
........+...+.++|.....+... .+++..++.-++.. ++ . . ........+..+.+.++.
T Consensus 515 ~~d~~~~vr~~a~~~l~~~~~~l~~~--~~~l~~vl~~l~~~----l~-~---~-----v~~~A~~al~~l~~~~~~--- 576 (971)
T 2x1g_F 515 YEKLNVKLLGTALETMGSYCNWLMEN--PAYIPPAINLLVRG----LN-S---S-----MSAQATLGLKELCRDCQL--- 576 (971)
T ss_dssp TTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHH----HH-S---S-----CHHHHHHHHHHHHHHCHH---
T ss_pred ccccCHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHH----hC-h---H-----HHHHHHHHHHHHHHHHHH---
Confidence 21123446777888888776554321 13444444444433 32 1 1 112233444555554432
Q ss_pred CCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhc-hhhHHhHHHHHHHHHHHHh----cCC-------
Q psy6178 610 SEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVG-KDFAHLLEPLVKQIVVLYS----KHP------- 677 (912)
Q Consensus 610 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~-~~~~p~l~~l~~~l~~~~~----~~~------- 677 (912)
.+.+++..++..+..++....-+....+.+.+++..++...+ +...|++..+++.+...+. ...
T Consensus 577 ----~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~ 652 (971)
T 2x1g_F 577 ----QLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARI 652 (971)
T ss_dssp ----HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHH
T ss_pred ----hccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHH
Confidence 356777877777777777533456778888999999888765 5566666655554444332 111
Q ss_pred -CcchHHhHHHHHHHhcC--c-cc-----hHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCcccc
Q psy6178 678 -HSSFLYLGSILVDEYAT--S-HC-----VSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFL 748 (912)
Q Consensus 678 -~~~~L~~~~~lv~~~g~--~-~~-----~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l 748 (912)
...++..++.++...+. + .. .+.+...+..+...+..+++. ...+++++++.++++.+++......+
T Consensus 653 ~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~---~~~~~~v~e~~~~~~~~~~~~~~~~~- 728 (971)
T 2x1g_F 653 RTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM---WVEEIDVLEAACSAMKHAITNLRSSF- 728 (971)
T ss_dssp HHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH---TTTCHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHhhhhhc-
Confidence 11245555666555543 0 00 112233333333333333432 22456899999999999887765554
Q ss_pred CchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhhccCC
Q psy6178 749 TSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRV 788 (912)
Q Consensus 749 ~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~~ 788 (912)
.+++..+++..+.++... +. ..++.++..++..-+.
T Consensus 729 -~p~l~~~~~~l~~~~~~~-~~--~~~l~l~~~~i~~~~~ 764 (971)
T 2x1g_F 729 -QPMLQDLCLFIVASFQTR-CC--APTLEISKTAIVMFFK 764 (971)
T ss_dssp -CTHHHHHHHHHHHHCC---CC--HHHHHHHHHHHTTCCC
T ss_pred -cccHHHHHHHHHHHHhcC-Cc--hHHHHHHHHHHHHhCC
Confidence 346788888777776653 22 3467777777765443
No 26
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.01 E-value=2e-05 Score=80.14 Aligned_cols=179 Identities=11% Similarity=0.085 Sum_probs=120.9
Q ss_pred CCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCC-CchHHHHHHHHHHHHHHHHHHhcC-cCcHHHHHHHHH
Q psy6178 410 NNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPP-STHIAVRYTSLLLLGELCEWIDKH-PHTLETILNFLL 487 (912)
Q Consensus 410 ~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~-~~~~~v~~t~~~~lg~y~~~l~~~-p~~l~~~l~~l~ 487 (912)
.+.+|..+.+++..+..+.++++........++++.+...-. +.++.||..++.++|.++.-+... ..++..+++.++
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll 104 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLL 104 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 468899999999999999988543223334566665544332 568999999999999999877643 257888999999
Q ss_pred HhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHH-HHHHHHHH
Q psy6178 488 HCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQ-ISEALKQL 564 (912)
Q Consensus 488 ~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~-~~~~l~~l 564 (912)
..+.++. ++..|+.|+..++..+. ++.++..+...... -....|..++..++.++....++. ...++..+
T Consensus 105 ~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l 177 (242)
T 2qk2_A 105 EKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALNKKLLKLL 177 (242)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Confidence 9999875 99999999999987542 34555555443332 255678999999999988875442 33455444
Q ss_pred HHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcC
Q psy6178 565 CLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTS 605 (912)
Q Consensus 565 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ 605 (912)
+..+ ..++... .. .......++++.+.+.++
T Consensus 178 ~p~l----~~~l~D~---~~---~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 178 TTSL----VKTLNEP---DP---TVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHH----HHHHTSS---CH---HHHHHHHHHHHHHHHHHC
T ss_pred HHHH----HHHhcCC---Ch---HHHHHHHHHHHHHHHHcC
Confidence 4443 3344321 11 112335666777766665
No 27
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.00022 Score=72.46 Aligned_cols=175 Identities=11% Similarity=0.099 Sum_probs=126.7
Q ss_pred HHHHHHHHhhcCCCCccchhHHHHHHHHhhcccC-CCCc-CcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCc
Q psy6178 399 CFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVL-PEEN-DVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHP 476 (912)
Q Consensus 399 ~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~-~~~~-~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p 476 (912)
++..+...+. .+.+-..+++++.+++.+++++. +.-. .+...+++.++..-.+..+.|+..+..++-.+++.....-
T Consensus 61 ~~~~L~~~l~-~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~ 139 (249)
T 2qk1_A 61 LLGIYGHIIQ-KDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA 139 (249)
T ss_dssp HHHHHHHHHH-HCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc
Confidence 3334444442 34556667999999999999997 6666 7888888766544334568898888888877777653221
Q ss_pred --CcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhh---hhhhhcH-HHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q psy6178 477 --HTLETILNFLLHCLQQPG--LASVTANALQSISTACC---THMVGHF-NGLLQIIQCLDTLSISNDAAIGLLKGVAII 548 (912)
Q Consensus 477 --~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~---~~L~~~~-~~ll~~~~~l~~~~~~~~~~~~l~eai~~v 548 (912)
.+++.+++.++..+.++. ++..+...+.++++..+ ..+.+++ +.++..+....+. -..+.|...+++++.+
T Consensus 140 ~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D-~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 140 SSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND-TQPAIRTIGFESFAIL 218 (249)
T ss_dssp TTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 248899999999998754 89999999999999887 4688888 8898888765543 3566899999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHhHHHHHHH
Q psy6178 549 VSDMPQDQISEALKQLCLVQVKPLCEL 575 (912)
Q Consensus 549 i~~~p~~~~~~~l~~l~~p~~~~l~~~ 575 (912)
...++.+...+++..+-+.-...++.+
T Consensus 219 ~~~vG~~~~~p~l~~Ld~~k~~ki~~~ 245 (249)
T 2qk1_A 219 IKIFGMNTFVKTLEHLDNLKRKKIEET 245 (249)
T ss_dssp HHHHCSGGGHHHHHHSCHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHhHHHHHHHHHH
Confidence 988876666666666533333444443
No 28
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.96 E-value=0.0007 Score=83.70 Aligned_cols=279 Identities=7% Similarity=0.058 Sum_probs=166.1
Q ss_pred HHHHhhcCC-CCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh--------
Q psy6178 403 MFNSLHENN-VMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID-------- 473 (912)
Q Consensus 403 l~~~l~~~~-~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~-------- 473 (912)
+.+.+..++ .+-..+-+++++++.+++.+. .+++..+++.+.+.-.++++.|+..++.++.++++...
T Consensus 460 v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~ 536 (960)
T 1wa5_C 460 IAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFI 536 (960)
T ss_dssp THHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBS
T ss_pred hHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccccccc
Confidence 455554332 244456788999999999763 34677777765544344579999999999998876422
Q ss_pred --c--CcCcHHHHHHHHHHhcCCC-----C--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhc----CCChHHH
Q psy6178 474 --K--HPHTLETILNFLLHCLQQP-----G--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTL----SISNDAA 538 (912)
Q Consensus 474 --~--~p~~l~~~l~~l~~~l~~~-----~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~----~~~~~~~ 538 (912)
. -..+++++++.++..+... + ....+.+++.++++.+...+.||++.++..+...... .-....+
T Consensus 537 ~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~ 616 (960)
T 1wa5_C 537 FHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFT 616 (960)
T ss_dssp SCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred ccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 1 1367899999888877653 1 4568899999999999999999999998877643221 1123345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhc---CCCc-------
Q psy6178 539 IGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHT---SPRI------- 608 (912)
Q Consensus 539 ~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l---~~~~------- 608 (912)
..++++++.++.+..++....+...++.++ ..+++... . ...-..++.++.+.+.. .+..
T Consensus 617 ~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~----~~iL~~~~---~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 686 (960)
T 1wa5_C 617 HYTFESIGAILNYTQRQNLPLLVDSMMPTF----LTVFSEDI---Q---EFIPYVFQIIAFVVEQSATIPESIKPLAQPL 686 (960)
T ss_dssp HHHHHHHHHHHHTSCGGGHHHHHHHHHHHH----HHHHHTTC---T---TTHHHHHHHHHHHHHHCSSCCTTTGGGHHHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHH----HHHHHhhh---H---hhHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 679999999999866555554544444333 33343321 0 11112334444433322 1100
Q ss_pred ---C--CCCCCh---HHHHHhHh----------HHHHHHHHhhccchhHHHHHHHHHHHHHHHhchh-hHHhHHHHHHHH
Q psy6178 609 ---M--SEPHPC---QGVITELW----------PVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKD-FAHLLEPLVKQI 669 (912)
Q Consensus 609 ---~--~~~~~~---~~~~~~~~----------~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~-~~p~l~~l~~~l 669 (912)
. ...+.+ .+.+..++ ..+..++.....+...-+.+|.++..++..++.+ +.||++++++.+
T Consensus 687 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l 766 (960)
T 1wa5_C 687 LAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLL 766 (960)
T ss_dssp TSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHH
T ss_pred cCHHHhcCCCCchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 0 001110 11111110 1111222221111112277899999999999988 999999999999
Q ss_pred HHHHhcCCCcch----HHhHHHHHHHhcC
Q psy6178 670 VVLYSKHPHSSF----LYLGSILVDEYAT 694 (912)
Q Consensus 670 ~~~~~~~~~~~~----L~~~~~lv~~~g~ 694 (912)
+...+......+ +...+.++..||.
T Consensus 767 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 795 (960)
T 1wa5_C 767 LQRLQNSKTERYVKKLTVFFGLISNKLGS 795 (960)
T ss_dssp HHGGGSSCCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHhhCCcHhHHHHHHHHHHHHHHHcCH
Confidence 888765544433 3445555555543
No 29
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.84 E-value=0.00074 Score=68.39 Aligned_cols=188 Identities=15% Similarity=0.122 Sum_probs=130.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhc-CcCcHHHHHHHHHHhcC-CCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHh
Q psy6178 453 THIAVRYTSLLLLGELCEWIDK-HPHTLETILNFLLHCLQ-QPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCL 528 (912)
Q Consensus 453 ~~~~v~~t~~~~lg~y~~~l~~-~p~~l~~~l~~l~~~l~-~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l 528 (912)
.+...|..++..|+...+--.. ....+..+++.+...+. +++ |+..|+.++..++...+..+.+|.+.++..+...
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~ 106 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEK 106 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4688999999988877764111 12345788888888885 655 8889999999999999988999999999887654
Q ss_pred hhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCc
Q psy6178 529 DTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRI 608 (912)
Q Consensus 529 ~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~ 608 (912)
... -....|..+.+++..++...+. ..++..+ ...+... + .......+..++.++...++.
T Consensus 107 l~d-~~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l----~~~l~~~----~--~~vr~~~l~~l~~~l~~~~~~- 167 (242)
T 2qk2_A 107 FKE-KKPNVVTALREAIDAIYASTSL-------EAQQESI----VESLSNK----N--PSVKSETALFIARALTRTQPT- 167 (242)
T ss_dssp GGC-CCHHHHHHHHHHHHHHHTTSCH-------HHHHHHH----HHHTTCS----C--HHHHHHHHHHHHHHHTTCCGG-
T ss_pred HcC-CCHHHHHHHHHHHHHHHHcCCH-------HHHHHHH----HHHHcCC----C--hHHHHHHHHHHHHHHHHcCCC-
Confidence 332 2456788899999999887653 2233332 2222211 1 111233566666665554321
Q ss_pred CCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchh-hHHhHHHH
Q psy6178 609 MSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKD-FAHLLEPL 665 (912)
Q Consensus 609 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~-~~p~l~~l 665 (912)
....+.+..++|.+..++. ..+++|++.+..++..+...+|.. +.|+++.+
T Consensus 168 ----~~~~~~l~~l~p~l~~~l~--D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 168 ----ALNKKLLKLLTTSLVKTLN--EPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp ----GCCHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred ----CccHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 1234667888888888774 357899999999999999999986 78887654
No 30
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.82 E-value=0.051 Score=62.99 Aligned_cols=129 Identities=14% Similarity=0.113 Sum_probs=73.3
Q ss_pred HHHhHhHHHHHhhhHhcCc--HHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchH
Q psy6178 378 DFRLKVSELVKDVVFIVGS--STCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHI 455 (912)
Q Consensus 378 ~~R~~~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~ 455 (912)
+||..+...+..++..+.+ +.++..+.+.+..++. .-.-|+ ...+..+....+.-....+..++..+.. |. .+.
T Consensus 419 ~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~-~v~~ev-~~~l~~ii~~~~~~~~~~~~~l~~~l~~-~~-~~~ 494 (621)
T 2vgl_A 419 SIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGD-YVSEEV-WYRVIQIVINRDDVQGYAAKTVFEALQA-PA-CHE 494 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGG-GSCSHH-HHHHHHHHGGGCSCHHHHHHHHHHHHTS-SS-CCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-cchHHH-HHHHHHHHhCChhHHHHHHHHHHHHHcC-cc-chH
Confidence 3555555555555544332 3466666665543221 222233 3333434333332222335555655532 32 345
Q ss_pred HHHHHHHHHHHHHHHHHhcCcCcHH-HHHHHHHHhcCC--CChHHHHHHHHHHHHHHh
Q psy6178 456 AVRYTSLLLLGELCEWIDKHPHTLE-TILNFLLHCLQQ--PGLASVTANALQSISTAC 510 (912)
Q Consensus 456 ~v~~t~~~~lg~y~~~l~~~p~~l~-~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~ 510 (912)
.+.+.++|++|.|++.+...|...+ .++..+...+.. +.++..+-.|+.++...+
T Consensus 495 ~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~ 552 (621)
T 2vgl_A 495 NLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF 552 (621)
T ss_dssp HHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC
Confidence 6777888999999999987654322 556677766554 348888888999887655
No 31
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.76 E-value=0.0011 Score=82.22 Aligned_cols=295 Identities=11% Similarity=0.074 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhc----CCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhh
Q psy6178 457 VRYTSLLLLGELCEWIDKHPHTLETILNFLLHCL----QQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDT 530 (912)
Q Consensus 457 v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l----~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~ 530 (912)
.|..+..++...++.+. ++.++.+++++-..+ .+++ ...+|.+++..+++.|.....++++.++..+..+..
T Consensus 423 ~r~~~~~~L~~~~~~~~--~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~ 500 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLG--AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISI 500 (963)
T ss_dssp HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCC
T ss_pred HHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCC
Confidence 35666667766665543 456777777776666 3333 678899999999998877666777777775433322
Q ss_pred cCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCC
Q psy6178 531 LSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMS 610 (912)
Q Consensus 531 ~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~ 610 (912)
-....+...+..+|....-+... ..++.+++..+-..+.. .. ........+..+.+..+.
T Consensus 501 --~~~~vr~~~~~~l~~~~~~l~~~------~~~l~~vl~~l~~~l~~-----~~---V~~~A~~al~~l~~~~~~---- 560 (963)
T 2x19_B 501 --SNVQLADTVMFTIGALSEWLADH------PVMINSVLPLVLHALGN-----PE---LSVSSVSTLKKICRECKY---- 560 (963)
T ss_dssp --CSHHHHHHHHHHHHHTHHHHHHC------HHHHTTTHHHHHHHTTC-----GG---GHHHHHHHHHHHHHHTGG----
T ss_pred --CcHHHHHHHHHHHHHHHHHHHhC------HHHHHHHHHHHHHHhCC-----ch---HHHHHHHHHHHHHHHHHH----
Confidence 12334566666666654432111 13455665555444421 11 112234445555554432
Q ss_pred CCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhc-hhhHHhHHHHHHHHHHHHhc---CC-C-------
Q psy6178 611 EPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVG-KDFAHLLEPLVKQIVVLYSK---HP-H------- 678 (912)
Q Consensus 611 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~-~~~~p~l~~l~~~l~~~~~~---~~-~------- 678 (912)
.+.+++..+++.+..++....-+....+.+.++++.++...+ +...|++..+++.+...+.. .+ .
T Consensus 561 ---~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 637 (963)
T 2x19_B 561 ---DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAI 637 (963)
T ss_dssp ---GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHH
T ss_pred ---HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 234556777777777666433356778889999999988776 77888888888776655532 11 1
Q ss_pred cchHHhHHHHHHHhcC--cc---------------chHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHH
Q psy6178 679 SSFLYLGSILVDEYAT--SH---------------CVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQ 741 (912)
Q Consensus 679 ~~~L~~~~~lv~~~g~--~~---------------~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~ 741 (912)
..++.+++.+...++. +. ....+..++..+...+..+++. ..+++++.+..++++.+++.
T Consensus 638 ~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 638 VHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSK---WLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHHH
Confidence 1345566677776664 10 1112334444444444444543 22567899999999999998
Q ss_pred hCCccccCchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhh
Q psy6178 742 RAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIH 784 (912)
Q Consensus 742 ~~p~~~l~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~ 784 (912)
..+..+. ++++.++...+...... +. -..+..+..++.
T Consensus 715 ~~~~~~~--~~l~~~~~~l~~~~~~~-~~--~~~l~l~~~li~ 752 (963)
T 2x19_B 715 TLLDDFA--PMVPQLCEMLGRMYSTI-PQ--ASALDLTRQLVH 752 (963)
T ss_dssp HSSSTTG--GGHHHHHHHHHHHHHHS-CC--HHHHHHHHHHHH
T ss_pred hhccccc--ccHHHHHHHHHHHHHcC-Cc--cHHHHHHHHHHH
Confidence 8776663 45666666554444432 22 245555666655
No 32
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.69 E-value=0.032 Score=64.58 Aligned_cols=313 Identities=11% Similarity=0.100 Sum_probs=160.1
Q ss_pred CCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHH--HHHHHHHH
Q psy6178 411 NVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLE--TILNFLLH 488 (912)
Q Consensus 411 ~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~--~~l~~l~~ 488 (912)
+++...+..|+.+++.++ ..+..+.+++.+.+...+.+|.||++++.++++... .+|+.++ ..++.+..
T Consensus 97 ~~n~~ir~~AL~~L~~i~------~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~---~~p~~~~~~~~~~~l~~ 167 (591)
T 2vgl_B 97 DPNPLIRALAVRTMGCIR------VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD---INAQMVEDQGFLDSLRD 167 (591)
T ss_dssp SSSHHHHHHHHHHHHTCC------SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH---SSCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh---hChhhcccccHHHHHHH
Confidence 445555677777777664 233455555554444446789999999999988765 5688887 58888889
Q ss_pred hcCCCC--hHHHHHHHHHHHHHHhhhh-hhhc----HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy6178 489 CLQQPG--LASVTANALQSISTACCTH-MVGH----FNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEAL 561 (912)
Q Consensus 489 ~l~~~~--v~~~A~~al~~l~~~~~~~-L~~~----~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l 561 (912)
.+.+++ |+..|+.+|..+|.+.... .... +..++..+. . .++-.+..+++.++.+... +++..
T Consensus 168 lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~---~--~~~~~q~~il~~l~~l~~~-~~~~~---- 237 (591)
T 2vgl_B 168 LIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN---E--CTEWGQIFILDCLSNYNPK-DDREA---- 237 (591)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH---H--CCHHHHHHHHHHHHTSCCC-SHHHH----
T ss_pred HhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC---C--CCchHHHHHHHHHHHhCCC-ChHHH----
Confidence 888865 8899999999998764322 1222 333333332 2 2334566777766554321 11111
Q ss_pred HHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHH
Q psy6178 562 KQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVME 641 (912)
Q Consensus 562 ~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e 641 (912)
..+++++. .+++.. + ......++..+..+...++. .+..+..+...+.+.+..++ ..++.++-
T Consensus 238 ~~~l~~l~----~~l~~~---~---~~V~~ea~~~i~~l~~~~~~----~~~~~~~~~~~~~~~L~~L~---~~d~~vr~ 300 (591)
T 2vgl_B 238 QSICERVT----PRLSHA---N---SAVVLSAVKVLMKFLELLPK----DSDYYNMLLKKLAPPLVTLL---SGEPEVQY 300 (591)
T ss_dssp HHHHHHHT----TCSCSS---T---THHHHHHHHHHHHSCCSCCB----TTBSHHHHHHHTHHHHHHHT---TSCHHHHH
T ss_pred HHHHHHHH----HHHcCC---C---hHHHHHHHHHHHHHhhccCC----CHHHHHHHHHHHHHHHHHHh---cCCccHHH
Confidence 22222221 111111 1 11112234444444332211 11233334455555555443 36788888
Q ss_pred HHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCCCcchHHh-HHHHHHHhcC-ccchHHHHHHHHHHhHHHHHhhcCc
Q psy6178 642 HSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYL-GSILVDEYAT-SHCVSGLLDMVQAFLPPTYAILQEE 719 (912)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~~~~~L~~-~~~lv~~~g~-~~~~~~l~~l~~~l~~~~~~~l~~~ 719 (912)
.+++.+..+...-...+.+++..+ +.....+..+.. +-.++...+. +++.. ++..+. ..+.
T Consensus 301 ~aL~~l~~i~~~~p~~~~~~~~~~-------~~~~~d~~~Ir~~al~~L~~l~~~~nv~~----iv~~L~----~~l~-- 363 (591)
T 2vgl_B 301 VALRNINLIVQKRPEILKQEIKVF-------FVKYNDPIYVKLEKLDIMIRLASQANIAQ----VLAELK----EYAT-- 363 (591)
T ss_dssp HHHHHHHHHHHHCCSTTTTCTTTT-------SCCTTSCHHHHHHHHHHHHHTCCSSTHHH----HHHHHH----HHTT--
T ss_pred HHHHHHHHHHHhChHHHHHHHHhh-------eeccCChHHHHHHHHHHHHHHCChhhHHH----HHHHHH----HHHh--
Confidence 888888887765443333332211 111111112111 1122233444 32222 222221 2222
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhCCccccCchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhhc
Q psy6178 720 DGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHN 785 (912)
Q Consensus 720 ~~~~~~pd~~~~~f~l~~~~l~~~p~~~l~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~ 785 (912)
..+++++....+-+..+..++|.. ...+++..+..+..........+...+..++..
T Consensus 364 ---~~d~~~r~~~v~aI~~la~~~~~~------~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~ 420 (591)
T 2vgl_B 364 ---EVDVDFVRKAVRAIGRCAIKVEQS------AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRK 420 (591)
T ss_dssp ---SSCHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHHhChhH------HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 235677777777777777766521 233333333334444445556666677777754
No 33
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.63 E-value=0.045 Score=63.62 Aligned_cols=223 Identities=12% Similarity=0.113 Sum_probs=124.5
Q ss_pred CccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCC
Q psy6178 413 MWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQ 492 (912)
Q Consensus 413 ~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~ 492 (912)
+-..+-.|+.+++.++.. +..+.+++.+.+...+.+|.||++|+.++++... .+|+.++..++.+...+.+
T Consensus 120 n~~vr~lAL~~L~~i~~~------~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~---~~p~~v~~~~~~l~~lL~D 190 (618)
T 1w63_A 120 TQFVQGLALCTLGCMGSS------EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR---KVPELMEMFLPATKNLLNE 190 (618)
T ss_dssp SSHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH---HCGGGGGGGGGGTTTSTTC
T ss_pred CHhHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HChHHHHHHHHHHHHHhCC
Confidence 333456778888877632 2344444444333334689999999999998776 3688877777777777777
Q ss_pred CC--hHHHHHHHHHHHHHHhh---hhhhhcHHHHHHHHHHhhhcC---------C-ChHHHHHHHHHHHHHHhcCCHHHH
Q psy6178 493 PG--LASVTANALQSISTACC---THMVGHFNGLLQIIQCLDTLS---------I-SNDAAIGLLKGVAIIVSDMPQDQI 557 (912)
Q Consensus 493 ~~--v~~~A~~al~~l~~~~~---~~L~~~~~~ll~~~~~l~~~~---------~-~~~~~~~l~eai~~vi~~~p~~~~ 557 (912)
++ |+..|..+|..+|+... ..+.+.++.++..+..+.... . ++-.+..+++.++.+...-|. .
T Consensus 191 ~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~-~- 268 (618)
T 1w63_A 191 KNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD-S- 268 (618)
T ss_dssp CCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-H-
T ss_pred CCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-H-
Confidence 54 88999999999986543 245566777777766542210 1 233567888888887654332 1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccch
Q psy6178 558 SEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDA 637 (912)
Q Consensus 558 ~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 637 (912)
. ..+.+-|.+++.... ... ........+++..++. +.. .+ .....+.+.+...+. ..++
T Consensus 269 ~-------~~~~~~L~~l~~~~~--~~~-~~~~aV~~ea~~~i~~-l~~------~~--~l~~~a~~~L~~~L~--~~d~ 327 (618)
T 1w63_A 269 S-------EAMNDILAQVATNTE--TSK-NVGNAILYETVLTIMD-IKS------ES--GLRVLAINILGRFLL--NNDK 327 (618)
T ss_dssp H-------HTTHHHHHHHHHTSC--CSS-THHHHHHHHHHHHHHH-SCC------CH--HHHHHHHHHHHHHHT--CSST
T ss_pred H-------HHHHHHHHHHHhccc--ccc-chHHHHHHHHHHHHHh-cCC------CH--HHHHHHHHHHHHHHh--CCCC
Confidence 1 111122222332210 000 0011122333333333 221 11 122334444444433 3577
Q ss_pred hHHHHHHHHHHHHHHHhchhhHHhHHHHHH
Q psy6178 638 RVMEHSSRCLRYAIRCVGKDFAHLLEPLVK 667 (912)
Q Consensus 638 ~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~ 667 (912)
.++..+...+..+...-...+.++...++.
T Consensus 328 ~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~ 357 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDHNAVQRHRSTIVD 357 (618)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHGGGHHHHHH
T ss_pred chHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 888888888888777555555555555443
No 34
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.51 E-value=0.0041 Score=76.20 Aligned_cols=332 Identities=11% Similarity=0.085 Sum_probs=185.1
Q ss_pred CcHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHHHhc--CcCcHHHHHHHHHHhcCC-----CC--hHHHHHHHHHH
Q psy6178 437 DVVPKVVEAILHL--PPSTHIAVRYTSLLLLGELCEWIDK--HPHTLETILNFLLHCLQQ-----PG--LASVTANALQS 505 (912)
Q Consensus 437 ~~l~~l~~~l~~~--~~~~~~~v~~t~~~~lg~y~~~l~~--~p~~l~~~l~~l~~~l~~-----~~--v~~~A~~al~~ 505 (912)
+.++.+++.+.+. ....+...+.++++++|..++-... ...+++.++++++.-+.+ +. ++..+++.+.+
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 3444455544321 1124678899999999997764322 135788888888875542 33 66678899999
Q ss_pred HHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHhHHHHHHHHHhcCC
Q psy6178 506 ISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISE----ALKQLCLVQVKPLCELIEKQIK 581 (912)
Q Consensus 506 l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~----~l~~l~~p~~~~l~~~~~~~~~ 581 (912)
+++=+..+ ..+++++++.+...... -.+..+.....++..++...... ... ....++.++++.+.++...-
T Consensus 527 y~~wl~~~-~~~L~~vl~~L~~~l~~-~~~~v~~~A~~al~~l~~~c~~~-l~~~~~~e~~p~~~~il~~l~~~~~~l-- 601 (1023)
T 4hat_C 527 YPRFLKAH-WNFLRTVILKLFEFMHE-THEGVQDMACDTFIKIVQKCKYH-FVIQQPRESEPFIQTIIRDIQKTTADL-- 601 (1023)
T ss_dssp CHHHHHHC-HHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHTHH-HHSCCTTCSSCHHHHHHHTHHHHHTTS--
T ss_pred HHHHHhcc-HHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHH-hhccCCCCCchhHHHHHHHHHHHHHhC--
Confidence 88876543 23566666665543221 12335666777777776543211 000 00124555555565655422
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhh----cc------chh---HHHHHHHHHH
Q psy6178 582 PEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETY----QQ------DAR---VMEHSSRCLR 648 (912)
Q Consensus 582 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~------~~~---v~e~~~~~~~ 648 (912)
+ ........+.+|.+++.++... .-..+++.+++.+...+... .. |++ ..-.++++..
T Consensus 602 -~---~~~~~~lyeai~~vi~~~~~~~-----~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~ 672 (1023)
T 4hat_C 602 -Q---PQQVHTFYKACGIIISEERSVA-----ERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNV 672 (1023)
T ss_dssp -C---HHHHHHHHHHHHHHHTTCCSHH-----HHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHH
T ss_pred -C---HHHHHHHHHHHHHHHHhCCCHh-----hHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHH
Confidence 1 1123456788999988875421 12345566655544333321 11 222 2344566777
Q ss_pred HHHHHhchhhHHhHHHHHHHHHHHHhcCC------------C----c--chHHhHHH----HHHHh-cC-ccchHHHHHH
Q psy6178 649 YAIRCVGKDFAHLLEPLVKQIVVLYSKHP------------H----S--SFLYLGSI----LVDEY-AT-SHCVSGLLDM 704 (912)
Q Consensus 649 ~~~~~l~~~~~p~l~~l~~~l~~~~~~~~------------~----~--~~L~~~~~----lv~~~-g~-~~~~~~l~~l 704 (912)
.+..++|..+.|++.++...++..|+... . + -.+..+.. ++..| +. ++......++
T Consensus 673 ~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~ 752 (1023)
T 4hat_C 673 AVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVL 752 (1023)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHT
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHh
Confidence 78888999999999998887776654320 0 0 11112111 11111 11 2233334455
Q ss_pred HHHHhHHHHHhhcCcCCCCCCCchH-HHHHHHHHHHHHhCCccccCc--hhhHHHHHHHHHhcc---cCCchhHHHHHHH
Q psy6178 705 VQAFLPPTYAILQEEDGLKNHPDTV-DDLFRLCTRFLQRAPIAFLTS--SFISSVMQCGILATH---LDHREANSTVMKF 778 (912)
Q Consensus 705 ~~~l~~~~~~~l~~~~~~~~~pd~~-~~~f~l~~~~l~~~p~~~l~~--~~l~~i~~~~~~~l~---~~~~~~~~~~~~f 778 (912)
+.+++..++.-.... .|+.. -+++.+.+.++.+....+.+. .+++.+|.+.+.=++ .++|+....-+++
T Consensus 753 ~~~l~~~vl~dY~~~-----~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~l 827 (1023)
T 4hat_C 753 VEPLLNAVLEDYMNN-----VPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKL 827 (1023)
T ss_dssp HHHHHHHHHHHHHHS-----CGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----ChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHH
Confidence 566666655544432 23332 355677888887776554332 357777877665554 3577878888888
Q ss_pred HHHHhhccC
Q psy6178 779 FYDLIHNNR 787 (912)
Q Consensus 779 l~~li~~~~ 787 (912)
+..++..+.
T Consensus 828 l~~~~~~~f 836 (1023)
T 4hat_C 828 LKVINEKSF 836 (1023)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHHCh
Confidence 888877653
No 35
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.47 E-value=0.0054 Score=76.53 Aligned_cols=316 Identities=10% Similarity=0.055 Sum_probs=169.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhcC--cCcHHHHHHHHHHhcC-------CCChHHHHHHHHHHHHHHhhhhhhhcHHHHHH
Q psy6178 453 THIAVRYTSLLLLGELCEWIDKH--PHTLETILNFLLHCLQ-------QPGLASVTANALQSISTACCTHMVGHFNGLLQ 523 (912)
Q Consensus 453 ~~~~v~~t~~~~lg~y~~~l~~~--p~~l~~~l~~l~~~l~-------~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~ 523 (912)
.+.+.+.++++++|+.++-+... ..+++.+++++..-.. +|.++..+++++.++++-.+.+ ..+++.+++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHH
Confidence 45778999999999876543221 2457888888776221 1235557889999888766553 245666666
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHH----HHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHH
Q psy6178 524 IIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQIS----EALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAA 599 (912)
Q Consensus 524 ~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~----~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 599 (912)
.+...... .....+.....++..++...+. ... ..+..++.++++.+..++... +. ......+++++.
T Consensus 544 ~ll~~l~~-~~~~V~~~A~~al~~l~~~~~~-~l~~~~~~~~~p~~~~il~~l~~~~~~~--~~----~~~~~~~eai~~ 615 (1049)
T 3m1i_C 544 KLFEFMHE-THEGVQDMACDTFIKIVQKCKY-HFVIQQPRESEPFIQTIIRDIQKTTADL--QP----QQVHTFYKACGI 615 (1049)
T ss_dssp HHHHHTTS-SCHHHHHHHHHHHHHHHHHHTH-HHHSCCTTCSSCHHHHHHHTHHHHHTTS--CH----HHHHHHHHHHHH
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHHHHHH-HhhcccCCCCCcHHHHHHHHHHHHHHhC--CH----HHHHHHHHHHHH
Confidence 55433221 1345677788888888765432 111 000145566666666666542 11 112345688888
Q ss_pred HhhhcCCCcCCCCCChHHHHHhHhHHHHHH----HHhhc------cchhHH---HHHHHHHHHHHHHhchhhHHhHHHHH
Q psy6178 600 IFKHTSPRIMSEPHPCQGVITELWPVLSKT----CETYQ------QDARVM---EHSSRCLRYAIRCVGKDFAHLLEPLV 666 (912)
Q Consensus 600 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~------~~~~v~---e~~~~~~~~~~~~l~~~~~p~l~~l~ 666 (912)
++...+.. .-..++++.+++.+.+- +.... ++++.. -..+.++..+++.+|..+.|+++.++
T Consensus 616 ii~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~ 690 (1049)
T 3m1i_C 616 IISEERSV-----AERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIY 690 (1049)
T ss_dssp HHHTCCSH-----HHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred HHHcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88766421 12345566666554322 22111 133222 34567888899999999999998877
Q ss_pred HHHHHHHhcC-----------CC----cchHHh-------HHHHHHHhcC--ccchHHHHHHHHHHhHHHHHhhcCcCCC
Q psy6178 667 KQIVVLYSKH-----------PH----SSFLYL-------GSILVDEYAT--SHCVSGLLDMVQAFLPPTYAILQEEDGL 722 (912)
Q Consensus 667 ~~l~~~~~~~-----------~~----~~~L~~-------~~~lv~~~g~--~~~~~~l~~l~~~l~~~~~~~l~~~~~~ 722 (912)
..++..|+.. .. ..+++. +..++..|.+ +........++..+...++..++.....
T Consensus 691 ~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~ 770 (1049)
T 3m1i_C 691 YNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPD 770 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 6555444321 00 001111 1112222322 1111111222223333333333321010
Q ss_pred CCCCchHHHHHHHHHHHHHhCCccccC--chhhHHHHHHHHHhcc---cCCchhHHHHHHHHHHHhhcc
Q psy6178 723 KNHPDTVDDLFRLCTRFLQRAPIAFLT--SSFISSVMQCGILATH---LDHREANSTVMKFFYDLIHNN 786 (912)
Q Consensus 723 ~~~pd~~~~~f~l~~~~l~~~p~~~l~--~~~l~~i~~~~~~~l~---~~~~~~~~~~~~fl~~li~~~ 786 (912)
... ..++.++..++.+.+..+-+ ...++.++.+....+. .++++...+.+.|+..++..+
T Consensus 771 ~~~----~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~ 835 (1049)
T 3m1i_C 771 ARD----AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKS 835 (1049)
T ss_dssp GCC----THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHC
T ss_pred ccc----HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhC
Confidence 011 35678888888777644321 1234555555444343 346788899999999999765
No 36
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.41 E-value=0.0097 Score=66.29 Aligned_cols=106 Identities=9% Similarity=0.144 Sum_probs=70.5
Q ss_pred HHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 399 CFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 399 ~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
.++.+...+. +.+|...+.++++++.++.+.... +...++.+++.+. +.++.+|..++++++.++...
T Consensus 277 ~l~~L~~ll~--~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~----~~~~~v~~~a~~~L~~l~~~~- 349 (450)
T 2jdq_A 277 ALQSLLHLLS--SPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ----TAEFRTRKEAAWAITNATSGG- 349 (450)
T ss_dssp HHHHHHHHTT--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH----HSCHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh----cCCHHHHHHHHHHHHHHHcCC-
Confidence 4455555554 346778889999999998753221 1244555655553 246899999999999987642
Q ss_pred cCcCcHH-----HHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhh
Q psy6178 474 KHPHTLE-----TILNFLLHCLQQP--GLASVTANALQSISTACCT 512 (912)
Q Consensus 474 ~~p~~l~-----~~l~~l~~~l~~~--~v~~~A~~al~~l~~~~~~ 512 (912)
.|+... .+++.++..+.++ +++..|+.+|.+++..+..
T Consensus 350 -~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 394 (450)
T 2jdq_A 350 -SAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394 (450)
T ss_dssp -CHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh
Confidence 222211 3556666666554 5999999999999987654
No 37
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.20 E-value=0.025 Score=64.50 Aligned_cols=348 Identities=10% Similarity=0.080 Sum_probs=178.1
Q ss_pred HHHHHHHhhcCCCCccchhHHHHHHHHhhcccC-CC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 400 FRHMFNSLHENNVMWEQTEAALYIMQSVAKNVL-PE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 400 l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~-~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
++.+...+. +.++.....|+.+++.++.+-. +. ....++.+++.+.. + .++.++..++++|+.++..-.
T Consensus 76 l~~lv~~L~--s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~-~--~~~~v~~~A~~~L~~l~~~~~ 150 (528)
T 4b8j_A 76 LPAMIGGVY--SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR-E--DFPQLQFEAAWALTNIASGTS 150 (528)
T ss_dssp HHHHHHHHT--SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC-T--TCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC-C--CCHHHHHHHHHHHHHHhCCCH
Confidence 455555554 3356666777888887765433 11 13567777776632 2 248999999999998875211
Q ss_pred cCcCcHH--HHHHHHHHhcCCC--ChHHHHHHHHHHHHHH---hhhhhhh--cHHHHHHHHHHhhhcCCChHHHHHHHHH
Q psy6178 474 KHPHTLE--TILNFLLHCLQQP--GLASVTANALQSISTA---CCTHMVG--HFNGLLQIIQCLDTLSISNDAAIGLLKG 544 (912)
Q Consensus 474 ~~p~~l~--~~l~~l~~~l~~~--~v~~~A~~al~~l~~~---~~~~L~~--~~~~ll~~~~~l~~~~~~~~~~~~l~ea 544 (912)
.+...+. .+++.++..+.++ +++..|+.+|.++|.+ ++..+.. .++.++..+ ....+...+..+..+
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL----~~~~~~~v~~~a~~~ 226 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL----NEHTKLSMLRNATWT 226 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTC----CTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHH----hcCCCHHHHHHHHHH
Confidence 1111111 3566666667654 4999999999999965 3333332 344444433 112345567888899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHH-HhHh
Q psy6178 545 VAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVI-TELW 623 (912)
Q Consensus 545 i~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~-~~~~ 623 (912)
++.+....|.... .. ..+.+..|..++... +. ......+..|+.+..+-. .....+. ..++
T Consensus 227 L~~L~~~~~~~~~-~~----~~~~l~~L~~lL~~~---~~---~v~~~a~~aL~~l~~~~~-------~~~~~~~~~g~v 288 (528)
T 4b8j_A 227 LSNFCRGKPQPSF-EQ----TRPALPALARLIHSN---DE---EVLTDACWALSYLSDGTN-------DKIQAVIEAGVC 288 (528)
T ss_dssp HHHHHCSSSCCCH-HH----HTTHHHHHHHHTTCC---CH---HHHHHHHHHHHHHTSSCH-------HHHHHHHHTTCH
T ss_pred HHHHHcCCCCCcH-HH----HHHHHHHHHHHHCCC---CH---HHHHHHHHHHHHHHcCCH-------HHHHHHHHcCHH
Confidence 9998876543211 11 233344444444322 11 112234555555543211 0011111 2345
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhH-HHHHHHHHHHHhcCCCcchHHhHHHHHHHhcCccchHHHH
Q psy6178 624 PVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLL-EPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLL 702 (912)
Q Consensus 624 ~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l-~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~~~~~~~l~ 702 (912)
|.+..++. ..++.+++.++.+++.+..........++ ..+++.++...........-.-+...+..+.. .......
T Consensus 289 ~~Lv~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~-~~~~~~~ 365 (528)
T 4b8j_A 289 PRLVELLL--HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA-GNKDQIQ 365 (528)
T ss_dssp HHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT-SCHHHHH
T ss_pred HHHHHHHc--CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC-CCHHHHH
Confidence 55555544 34678999999999887652222111111 11222222222222122222222222222221 0111122
Q ss_pred HHHH-HHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhC-Cccc---cCchhhHHHHHHHHHhcccCCchhHHHHHH
Q psy6178 703 DMVQ-AFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRA-PIAF---LTSSFISSVMQCGILATHLDHREANSTVMK 777 (912)
Q Consensus 703 ~l~~-~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~-p~~~---l~~~~l~~i~~~~~~~l~~~~~~~~~~~~~ 777 (912)
.++. .++...+.+|.. .++++.......+..+.... |... .....+.. .+..+...+......++.
T Consensus 366 ~~~~~~~i~~L~~lL~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~----L~~lL~~~d~~v~~~al~ 436 (528)
T 4b8j_A 366 AVINAGIIGPLVNLLQT-----AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKP----LCDLLICPDIRIVTVCLE 436 (528)
T ss_dssp HHHHTTCHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH----HHHGGGCSCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhc-----CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH----HHHHHcCCCHHHHHHHHH
Confidence 2221 233344445543 35778888778888887763 3221 11222333 333466677788888999
Q ss_pred HHHHHhhcc
Q psy6178 778 FFYDLIHNN 786 (912)
Q Consensus 778 fl~~li~~~ 786 (912)
.+..++...
T Consensus 437 ~L~~l~~~~ 445 (528)
T 4b8j_A 437 GLENILKVG 445 (528)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888654
No 38
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.16 E-value=0.017 Score=64.25 Aligned_cols=146 Identities=12% Similarity=0.107 Sum_probs=84.2
Q ss_pred HHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 399 CFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 399 ~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
.++.+...+. +.+|...+.++.+++.++.+.+.. +...++.+++.+ .++++.+|..++++|+.++..-.
T Consensus 235 ~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll----~~~~~~vr~~a~~~L~~l~~~~~ 308 (450)
T 2jdq_A 235 VCRRLVELLM--HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL----SSPKESIKKEACWTISNITAGNR 308 (450)
T ss_dssp THHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT----TCSSHHHHHHHHHHHHHHTTSCH
T ss_pred cHHHHHHHHC--CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH----cCCCHHHHHHHHHHHHHHHcCCH
Confidence 3445555553 567888999999999998763211 123444444443 33478999999999998874111
Q ss_pred cCc-CcH-HHHHHHHHHhcC--CCChHHHHHHHHHHHHHHhh-hhhhhcH-HHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q psy6178 474 KHP-HTL-ETILNFLLHCLQ--QPGLASVTANALQSISTACC-THMVGHF-NGLLQIIQCLDTLSISNDAAIGLLKGVAI 547 (912)
Q Consensus 474 ~~p-~~l-~~~l~~l~~~l~--~~~v~~~A~~al~~l~~~~~-~~L~~~~-~~ll~~~~~l~~~~~~~~~~~~l~eai~~ 547 (912)
.+- ..+ ..+++.++..+. +++++..|+.++.+++.... ......+ ..++..+..+... -+.+.+..++.+++.
T Consensus 309 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~ 387 (450)
T 2jdq_A 309 AQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV-MDSKIVQVALNGLEN 387 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHH
Confidence 000 001 123344444443 45699999999999997632 2221111 1233333333332 245567778888877
Q ss_pred HHhc
Q psy6178 548 IVSD 551 (912)
Q Consensus 548 vi~~ 551 (912)
++..
T Consensus 388 l~~~ 391 (450)
T 2jdq_A 388 ILRL 391 (450)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 39
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.03 E-value=0.033 Score=67.99 Aligned_cols=318 Identities=9% Similarity=0.067 Sum_probs=175.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhc--CcCcHHHHHHHHHHhcCCC-----C--hHHHHHHHHHHHHHHhhhhhhhcHHHHHH
Q psy6178 453 THIAVRYTSLLLLGELCEWIDK--HPHTLETILNFLLHCLQQP-----G--LASVTANALQSISTACCTHMVGHFNGLLQ 523 (912)
Q Consensus 453 ~~~~v~~t~~~~lg~y~~~l~~--~p~~l~~~l~~l~~~l~~~-----~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~ 523 (912)
.+...+.+.|+.+|..+.-+.. ...+++.++++++.-..++ . +++..++.+.+.++=.+.+ ..+++.+++
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L~~vl~ 569 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFLKTVVN 569 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHHHHHHH
Confidence 4678899999999998754432 2368999999998654433 1 4444556666666555543 235566665
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHH----HHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHH
Q psy6178 524 IIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQIS----EALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAA 599 (912)
Q Consensus 524 ~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~----~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 599 (912)
.+...... .....+.....++..+.+.-+.. .. .....++.++++.+..+...-. ........+.+|.
T Consensus 570 ~L~~~m~~-~~~~vq~aA~~af~~i~~~C~~~-lv~~~~~e~~p~i~~il~~~~~~~~~l~------~~~~~~lyeav~~ 641 (1073)
T 3gjx_A 570 KLFEFMHE-THDGVQDMACDTFIKIAQKCRRH-FVQVQVGEVMPFIDEILNNINTIICDLQ------PQQVHTFYEAVGY 641 (1073)
T ss_dssp HHHHHTTC-CSTTHHHHHHHHHHHHHHHTGGG-GTSCCTTCSSCHHHHHHTSHHHHHTTCC------HHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHH-HhhccccccchHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHH
Confidence 55433221 12345666777777776543311 00 0011244555555555433220 1123445688888
Q ss_pred HhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhh----------ccchhHHHHHH---HHHHHHHHHhchhhHHhHHHHH
Q psy6178 600 IFKHTSPRIMSEPHPCQGVITELWPVLSKTCETY----------QQDARVMEHSS---RCLRYAIRCVGKDFAHLLEPLV 666 (912)
Q Consensus 600 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----------~~~~~v~e~~~---~~~~~~~~~l~~~~~p~l~~l~ 666 (912)
+...++... .-..+++.+|+...+-.... ..|++.+..+. ++...+..++|..+.|++.++.
T Consensus 642 vi~~~p~~~-----~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~ 716 (1073)
T 3gjx_A 642 MIGAQTDQT-----VQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIY 716 (1073)
T ss_dssp HHTTCCCHH-----HHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHhCCCcc-----hHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHH
Confidence 888776421 11344555555544333221 12554444444 4445677789999999999888
Q ss_pred HHHHHHHhcC------------------CCcchHHhHH----HHHHHh-cC-ccchHHHHHHHHHHhHHHHHhhcCcCCC
Q psy6178 667 KQIVVLYSKH------------------PHSSFLYLGS----ILVDEY-AT-SHCVSGLLDMVQAFLPPTYAILQEEDGL 722 (912)
Q Consensus 667 ~~l~~~~~~~------------------~~~~~L~~~~----~lv~~~-g~-~~~~~~l~~l~~~l~~~~~~~l~~~~~~ 722 (912)
..++..|... +..-.+..+. .++..| +. ++......+++.+++..++.-.....+.
T Consensus 717 ~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~ 796 (1073)
T 3gjx_A 717 LDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPA 796 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence 7776665421 1111222222 122222 22 3333344455555555555444432122
Q ss_pred CCCCchHHHHHHHHHHHHHhCCccccCc--hhhHHHHHHHHHhcc---cCCchhHHHHHHHHHHHhhccCC
Q psy6178 723 KNHPDTVDDLFRLCTRFLQRAPIAFLTS--SFISSVMQCGILATH---LDHREANSTVMKFFYDLIHNNRV 788 (912)
Q Consensus 723 ~~~pd~~~~~f~l~~~~l~~~p~~~l~~--~~l~~i~~~~~~~l~---~~~~~~~~~~~~fl~~li~~~~~ 788 (912)
..+|+ ++.+.+.++.+....+-+. ..++.+|.|.+.=+. .++|+....-++++..+...+..
T Consensus 797 ~r~~e----vL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~ 863 (1073)
T 3gjx_A 797 AREPE----VLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFP 863 (1073)
T ss_dssp GCCTH----HHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGG
T ss_pred cccHH----HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhH
Confidence 34454 4577777777766544332 357888888765554 45777788888888888877654
No 40
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.00 E-value=0.013 Score=66.86 Aligned_cols=353 Identities=12% Similarity=0.078 Sum_probs=174.4
Q ss_pred HHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhc
Q psy6178 400 FRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK 474 (912)
Q Consensus 400 l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~ 474 (912)
++.+...+.. +.++...+.++++|+.++.+-+.. ....++.++..+. ++++.++..++++++..+..-..
T Consensus 119 v~~Lv~lL~~-~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~----~~~~~v~~~a~~aL~~l~~~~~~ 193 (528)
T 4b8j_A 119 VPRFVQFLTR-EDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG----SSSDDVREQAVWALGNVAGDSPK 193 (528)
T ss_dssp HHHHHHHHTC-TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhCC-CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhc----CCCHHHHHHHHHHHHHHhCCChh
Confidence 4444554542 233667788999999998753221 1234555555442 34789999999999998742111
Q ss_pred CcCcHH--HHHHHHHHhcC-C--CChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHH
Q psy6178 475 HPHTLE--TILNFLLHCLQ-Q--PGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIV 549 (912)
Q Consensus 475 ~p~~l~--~~l~~l~~~l~-~--~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi 549 (912)
..+.+. .+++.++..+. + +.++..|+.+|.++|......-.......+..+..+... -+.+.+...+.+++.+.
T Consensus 194 ~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 194 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS-NDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC-CCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 001111 24555566563 3 458999999999999763211111122333333333322 24556788888888877
Q ss_pred hcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHH-HhHhHHHHH
Q psy6178 550 SDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVI-TELWPVLSK 628 (912)
Q Consensus 550 ~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~ 628 (912)
... ++.....+. ...+..|..++... +. ......+..|+.+..+... ....++ ..++|.+..
T Consensus 273 ~~~-~~~~~~~~~---~g~v~~Lv~lL~~~---~~---~v~~~a~~~L~nl~~~~~~-------~~~~~~~~~~l~~L~~ 335 (528)
T 4b8j_A 273 DGT-NDKIQAVIE---AGVCPRLVELLLHP---SP---SVLIPALRTVGNIVTGDDA-------QTQCIIDHQALPCLLS 335 (528)
T ss_dssp SSC-HHHHHHHHH---TTCHHHHHHHTTCS---CH---HHHHHHHHHHHHHTTSCHH-------HHHHHHTTTHHHHHHH
T ss_pred cCC-HHHHHHHHH---cCHHHHHHHHHcCC---Ch---hHHHHHHHHHHHHHcCCHH-------HHHHHHHhhhHHHHHH
Confidence 543 222211111 12333333444322 11 1123355666666543211 111111 345677777
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHhchhhH-----HhHHHHHHHHHHHHhcCCCcchHHhHHHHHHHhcCccchHHHHH
Q psy6178 629 TCETYQQDARVMEHSSRCLRYAIRCVGKDFA-----HLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLD 703 (912)
Q Consensus 629 ~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~-----p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~~~~~~~l~~ 703 (912)
++.. ..++.+...+|.++..+...-..... ..+|.++..+... ...-....++.++.+... |.+.....+.+
T Consensus 336 lL~~-~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~-~~~~~~~~l~~ 412 (528)
T 4b8j_A 336 LLTQ-NLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSG-GSHDQIKYLVS 412 (528)
T ss_dssp HHHS-CCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH-SCHHHHHHHHH
T ss_pred HHcC-CCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 6653 22788999999999988653222111 2344444443221 000001122233333322 12111111110
Q ss_pred HHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCcccc-----CchhhHHH-----HHHHHHhcccCCchhHH
Q psy6178 704 MVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFL-----TSSFISSV-----MQCGILATHLDHREANS 773 (912)
Q Consensus 704 l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~~~l-----~~~~l~~i-----~~~~~~~l~~~~~~~~~ 773 (912)
..++.....+|.. .+++++...+..+..+++..+..-. ..+....+ ++.........+.+..+
T Consensus 413 --~~~i~~L~~lL~~-----~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~ 485 (528)
T 4b8j_A 413 --EGCIKPLCDLLIC-----PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYE 485 (528)
T ss_dssp --TTCHHHHHHGGGC-----SCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHH
T ss_pred --CCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHH
Confidence 1223344445543 4678888888888888876643110 01111121 22222223445666778
Q ss_pred HHHHHHHHHhhc
Q psy6178 774 TVMKFFYDLIHN 785 (912)
Q Consensus 774 ~~~~fl~~li~~ 785 (912)
.|..++..++..
T Consensus 486 ~a~~il~~~~~~ 497 (528)
T 4b8j_A 486 KAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHCCC
Confidence 888888877754
No 41
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.79 E-value=1.2 Score=51.50 Aligned_cols=125 Identities=13% Similarity=0.110 Sum_probs=83.6
Q ss_pred chhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCC--CCchHHHHHHHHHHHHHHHHHHhcCcCcHH--HHHHHHHHhcC
Q psy6178 416 QTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLP--PSTHIAVRYTSLLLLGELCEWIDKHPHTLE--TILNFLLHCLQ 491 (912)
Q Consensus 416 ~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~--~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~--~~l~~l~~~l~ 491 (912)
.+-.||.+++.+.. .+..+.+++.+.+.- .+.+|.||++|+.++.++.. .+|+.++ ..++.+...|.
T Consensus 127 ir~lALr~L~~i~~------~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~---~~p~~~~~~~~~~~l~~lL~ 197 (621)
T 2vgl_A 127 FMGLALHCIANVGS------REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR---TSPDLVPMGDWTSRVVHLLN 197 (621)
T ss_dssp HHHHHHHHHHHHCC------HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH---HCGGGCCCCSCHHHHHHHTT
T ss_pred HHHHHHHHhhccCC------HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH---hChhhcCchhHHHHHHHHhC
Confidence 35577888887754 223444444333332 35689999999999988776 3566665 66777777777
Q ss_pred CCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhc-CC-----------ChHHHHHHHHHHHHHH
Q psy6178 492 QPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTL-SI-----------SNDAAIGLLKGVAIIV 549 (912)
Q Consensus 492 ~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~-~~-----------~~~~~~~l~eai~~vi 549 (912)
+++ |...|..++..+|..-...+.++++.++..+..+... .. ++=.+..+++.++.+.
T Consensus 198 d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~ 269 (621)
T 2vgl_A 198 DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP 269 (621)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS
T ss_pred CCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC
Confidence 654 8899999999999887766777778777777654321 12 1225677777776654
No 42
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.70 E-value=0.041 Score=62.75 Aligned_cols=343 Identities=10% Similarity=0.094 Sum_probs=172.9
Q ss_pred HHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC------CcCcHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHH
Q psy6178 400 FRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE------ENDVVPKVVEAILHLPPST-HIAVRYTSLLLLGELCEWI 472 (912)
Q Consensus 400 l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~------~~~~l~~l~~~l~~~~~~~-~~~v~~t~~~~lg~y~~~l 472 (912)
+..+...+. +.++.....|+.+++.+...-... ....++.+++.+ .++ ++.++..++++++.++..-
T Consensus 89 i~~lv~~L~--s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L----~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 89 LPQMTQQLN--SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM----RENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp HHHHHHHHS--CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTT----STTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHh----CCCCCHHHHHHHHHHHHHHhCCC
Confidence 455555554 334666667777777775532111 123444444443 322 6899999999998876421
Q ss_pred hc------CcCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH---hhhhhh--hcHHHHHHHHHHhhhcCCChHHHHHH
Q psy6178 473 DK------HPHTLETILNFLLHCLQQPGLASVTANALQSISTA---CCTHMV--GHFNGLLQIIQCLDTLSISNDAAIGL 541 (912)
Q Consensus 473 ~~------~p~~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~---~~~~L~--~~~~~ll~~~~~l~~~~~~~~~~~~l 541 (912)
.. .+..++.++..+-+ .+++++..|+.+|.++|.+ ++..+. ..++.++..+. . -+.+.+..+
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~--~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~----~-~~~~v~~~a 235 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYT--GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN----S-NKPSLIRTA 235 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG----S-CCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhc----c-CCHHHHHHH
Confidence 11 13445555555443 3456999999999999964 343333 34455544432 1 245567888
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHH
Q psy6178 542 LKGVAIIVSDM-PQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVIT 620 (912)
Q Consensus 542 ~eai~~vi~~~-p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~ 620 (912)
+.+++.++... |... ... ....+..|..++... +. ......+..|+.+..+-. .....+.+
T Consensus 236 ~~~L~~L~~~~~~~~~-~~~----~~~~l~~L~~lL~~~---d~---~v~~~a~~~L~~L~~~~~-------~~~~~~~~ 297 (530)
T 1wa5_B 236 TWTLSNLCRGKKPQPD-WSV----VSQALPTLAKLIYSM---DT---ETLVDACWAISYLSDGPQ-------EAIQAVID 297 (530)
T ss_dssp HHHHHHHHCCSSSCCC-HHH----HGGGHHHHHHHTTCC---CH---HHHHHHHHHHHHHHSSCH-------HHHHHHHH
T ss_pred HHHHHHHhCCCCCCCc-HHH----HHhHHHHHHHHHcCC---CH---HHHHHHHHHHHHHhCCCH-------HHHHHHHh
Confidence 99999988654 2211 111 233344444444322 11 111234555555543211 01111222
Q ss_pred -hHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhH-HHHHHHHHHHHhcCCCcchHHhHHHHHHHhcCccch
Q psy6178 621 -ELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLL-EPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCV 698 (912)
Q Consensus 621 -~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l-~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~~~~~ 698 (912)
.++|.+..++. ..+..+++.++.+++.+...-+.....++ ..+++.++..... +....-.-+...+..+.. ...
T Consensus 298 ~~~v~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~vr~~A~~aL~~l~~-~~~ 373 (530)
T 1wa5_B 298 VRIPKRLVELLS--HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS-PKENIKKEACWTISNITA-GNT 373 (530)
T ss_dssp TTCHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTT-SCH
T ss_pred cCcHHHHHHHHC--CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC-CCHHHHHHHHHHHHHHHc-CCH
Confidence 34455555443 35788999999999887642221111111 1222333333222 222222222333333322 111
Q ss_pred HHHHHHH-HHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHHhCCc---c---ccCchhhHHHHHHHHHhcccCCchh
Q psy6178 699 SGLLDMV-QAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPI---A---FLTSSFISSVMQCGILATHLDHREA 771 (912)
Q Consensus 699 ~~l~~l~-~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~~~p~---~---~l~~~~l~~i~~~~~~~l~~~~~~~ 771 (912)
.....++ ..++...+.+|.. .++++.......+..+...... . +.....++.++ ..+...++..
T Consensus 374 ~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~----~ll~~~~~~v 444 (530)
T 1wa5_B 374 EQIQAVIDANLIPPLVKLLEV-----AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC----DLLEIADNRI 444 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHH----HHTTTCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHH----HHHhCCCHHH
Confidence 1222222 1233344445542 3577888777778778776432 1 11222333333 3455567777
Q ss_pred HHHHHHHHHHHhhcc
Q psy6178 772 NSTVMKFFYDLIHNN 786 (912)
Q Consensus 772 ~~~~~~fl~~li~~~ 786 (912)
...++..+..++...
T Consensus 445 ~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 445 IEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 788888888888643
No 43
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.53 E-value=0.063 Score=65.62 Aligned_cols=329 Identities=10% Similarity=0.033 Sum_probs=160.4
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCc----------CcHHHHHHHHHHhcCCCC--------------
Q psy6178 439 VPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHP----------HTLETILNFLLHCLQQPG-------------- 494 (912)
Q Consensus 439 l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p----------~~l~~~l~~l~~~l~~~~-------------- 494 (912)
+..+++.++....+++..|...++.++..|...+.+.+ +++..+++.++..+.-|+
T Consensus 330 l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~ 409 (980)
T 3ibv_A 330 LYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEA 409 (980)
T ss_dssp HHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHH
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHH
Confidence 34445544443333355777778888888887765322 356677777776654221
Q ss_pred ----hHHHHHHHHHHHHHHhhhh-hhhcHH-HHHHHHHHhhh--cCCChHHHHHHHHHHHHHHhcCCHHHHH-----HHH
Q psy6178 495 ----LASVTANALQSISTACCTH-MVGHFN-GLLQIIQCLDT--LSISNDAAIGLLKGVAIIVSDMPQDQIS-----EAL 561 (912)
Q Consensus 495 ----v~~~A~~al~~l~~~~~~~-L~~~~~-~ll~~~~~l~~--~~~~~~~~~~l~eai~~vi~~~p~~~~~-----~~l 561 (912)
.|...+ .+.+.|...... ..+++- .+...+..... ...+-.+.+..+.+++.+...++..... +.+
T Consensus 410 ~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~l 488 (980)
T 3ibv_A 410 EFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSP 488 (980)
T ss_dssp HHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCB
T ss_pred HHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchh
Confidence 122222 333333332221 122111 22222222111 0112346777888888877766531100 111
Q ss_pred HHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHH--h-hccchh
Q psy6178 562 KQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCE--T-YQQDAR 638 (912)
Q Consensus 562 ~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~-~~~~~~ 638 (912)
..++ ++ +..+++... +...........++.++...+.+.. || +.+-|++..++. . ...+..
T Consensus 489 p~l~-~l---l~~ll~s~i-~~~~hp~V~~~~~~~l~rys~~~~~------~~-----~~l~~~L~~ll~~~gl~~~~~~ 552 (980)
T 3ibv_A 489 TVLS-QI---LALVTTSQV-CRHPHPLVQLLYMEILVRYASFFDY------ES-----AAIPALIEYFVGPRGIHNTNER 552 (980)
T ss_dssp CHHH-HH---HHHHHHSST-TTCCCHHHHHHHHHHHHHTGGGGGT------CC-----TTHHHHHHHHTSTTTTTCCCTT
T ss_pred HHHH-HH---HHHHHhCCC-CCCCCHHHHHHHHHHHHHHHHHHhc------Cc-----hhHHHHHHHHhccccccCCChh
Confidence 1222 11 122333221 1111001112245566665555542 33 222344444444 2 234578
Q ss_pred HHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHHhcCCCc---------------------chHHh---HHHHHHHhcC
Q psy6178 639 VMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHS---------------------SFLYL---GSILVDEYAT 694 (912)
Q Consensus 639 v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~~~~~~~---------------------~~L~~---~~~lv~~~g~ 694 (912)
|..++|.++++.++.++..+.|+++++++.+...+.....+ .-+|+ ++.++...+.
T Consensus 553 V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~ 632 (980)
T 3ibv_A 553 VRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNL 632 (980)
T ss_dssp THHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999998776555422111 12333 6666766553
Q ss_pred --ccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCc--hHHHHHHHHHHHHHhCCcccc-Cch---hhHHHHHHHHHhcc-
Q psy6178 695 --SHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPD--TVDDLFRLCTRFLQRAPIAFL-TSS---FISSVMQCGILATH- 765 (912)
Q Consensus 695 --~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd--~~~~~f~l~~~~l~~~p~~~l-~~~---~l~~i~~~~~~~l~- 765 (912)
+.....+..++.++....-..++.. ..+..+ .+.+...-+.++.+..+..=- +.+ .+..+++..+.++.
T Consensus 633 ~~e~~~~~l~~ll~pl~~~l~~~l~~~--~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~ 710 (980)
T 3ibv_A 633 TPEEQALYCDSLINALIGKANAALSSD--LSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDR 710 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTS--CC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHh
Confidence 3445567777777666655555432 111112 233444445666665442211 112 23344444434443
Q ss_pred -cCCchhHHHHHHHHHHHhhcc
Q psy6178 766 -LDHREANSTVMKFFYDLIHNN 786 (912)
Q Consensus 766 -~~~~~~~~~~~~fl~~li~~~ 786 (912)
..+.....+++.++..++..-
T Consensus 711 ~~~~~~irea~~~~~~r~i~~l 732 (980)
T 3ibv_A 711 MGFNEDIRGAVRFTSGRIINVV 732 (980)
T ss_dssp SCCSHHHHHHHHHHHHHHTTTT
T ss_pred cCCcHHHHHHHHHHHHHHHHHc
Confidence 233444455566666766543
No 44
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.52 E-value=0.16 Score=57.77 Aligned_cols=143 Identities=10% Similarity=0.091 Sum_probs=82.8
Q ss_pred HHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH---
Q psy6178 400 FRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEW--- 471 (912)
Q Consensus 400 l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~--- 471 (912)
++.+...+. +.+|...+.++.+++.++.+.... +...++.++..+ .++++.+|..++++|+.++..
T Consensus 301 v~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL----~~~~~~vr~~A~~aL~~l~~~~~~ 374 (530)
T 1wa5_B 301 PKRLVELLS--HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL----SSPKENIKKEACWTISNITAGNTE 374 (530)
T ss_dssp HHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT----TCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHC--CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH----cCCCHHHHHHHHHHHHHHHcCCHH
Confidence 344444443 567888899999999998653211 123344444443 334789999999999988742
Q ss_pred -Hhc--CcCcHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh--hhhhcH--HHHHHHHHHhhhcCCChHHHHHHHHH
Q psy6178 472 -IDK--HPHTLETILNFLLHCLQQPGLASVTANALQSISTACCT--HMVGHF--NGLLQIIQCLDTLSISNDAAIGLLKG 544 (912)
Q Consensus 472 -l~~--~p~~l~~~l~~l~~~l~~~~v~~~A~~al~~l~~~~~~--~L~~~~--~~ll~~~~~l~~~~~~~~~~~~l~ea 544 (912)
... ....++.++..+-. .+++++..|+.+|.+++..... ....++ ..++..+..+... -+.+.+..++.+
T Consensus 375 ~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~a 451 (530)
T 1wa5_B 375 QIQAVIDANLIPPLVKLLEV--AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI-ADNRIIEVTLDA 451 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT-CCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHH
Confidence 110 12345555554432 3456999999999999987543 221111 1123333333222 244556677777
Q ss_pred HHHHHhc
Q psy6178 545 VAIIVSD 551 (912)
Q Consensus 545 i~~vi~~ 551 (912)
++.++..
T Consensus 452 L~~l~~~ 458 (530)
T 1wa5_B 452 LENILKM 458 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776654
No 45
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.29 E-value=0.14 Score=61.42 Aligned_cols=238 Identities=10% Similarity=0.101 Sum_probs=152.5
Q ss_pred hHHHHHHHHhhcccCC--CCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC-
Q psy6178 418 EAALYIMQSVAKNVLP--EENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG- 494 (912)
Q Consensus 418 Ea~L~~l~~iae~~~~--~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~- 494 (912)
|+|+.++.++++.... ..+.++-.+++.++..-.+....||.++-..+..+..-+ +|+-+..+++.++.++....
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~k 147 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAV--NPVAIKALLPHLTNAIVETNK 147 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS--CGGGHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHhccccc
Confidence 9999999999977643 234444445555554444556789988887777766655 57777888898888886542
Q ss_pred --hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHH
Q psy6178 495 --LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPL 572 (912)
Q Consensus 495 --v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l 572 (912)
....|...+.++++.+...+.-.++.++-.+..... ....+......+++..++..+.+.+ +.|.+..|
T Consensus 148 w~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-d~k~~v~~~~~~~~~~~~~~~~n~d--------~~~~~~~~ 218 (986)
T 2iw3_A 148 WQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMW-DTKKEVKAAATAAMTKATETVDNKD--------IERFIPSL 218 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHGGGCCCTT--------TGGGHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcc-cCcHHHHHHHHHHHHHHHhcCCCcc--------hhhhHHHH
Confidence 677899999999999988888889998888765332 2455666666666666666555433 34444444
Q ss_pred HHHHHhcCCCCCCCCCChHHHHHHHHHH--hhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHH
Q psy6178 573 CELIEKQIKPEKNKKSDPVIWLDRLAAI--FKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYA 650 (912)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~ 650 (912)
-.++... ++ ...++..|++. +..+ -.|.+.-+.|++.+-+.. ....+..+++-++..|
T Consensus 219 ~~~~~~p---~~-----~~~~~~~l~~~tfv~~v----------~~~~l~~~~p~l~r~l~~--~~~~~~r~~~~~~~n~ 278 (986)
T 2iw3_A 219 IQCIADP---TE-----VPETVHLLGATTFVAEV----------TPATLSIMVPLLSRGLNE--RETGIKRKSAVIIDNM 278 (986)
T ss_dssp HHHHHCT---TH-----HHHHHHHHTTCCCCSCC----------CHHHHHHHHHHHHHHHTS--SSHHHHHHHHHHHHHH
T ss_pred HHHhcCh---hh-----hHHHHHHhhcCeeEeee----------cchhHHHHHHHHHhhhcc--CcchhheeeEEEEcch
Confidence 4555443 21 22234444421 1111 123455566888887653 3444555666666666
Q ss_pred HHHhc--hhhHHhHHHHHHHHHHHHhcCCCcchHHhHH
Q psy6178 651 IRCVG--KDFAHLLEPLVKQIVVLYSKHPHSSFLYLGS 686 (912)
Q Consensus 651 ~~~l~--~~~~p~l~~l~~~l~~~~~~~~~~~~L~~~~ 686 (912)
.+-.. .+..||+|.+++.+-..+.....+..-.++.
T Consensus 279 ~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~ 316 (986)
T 2iw3_A 279 CKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTL 316 (986)
T ss_dssp HTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHH
T ss_pred hhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHH
Confidence 55443 4579999999998887777666655544433
No 46
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.47 E-value=1.2 Score=50.45 Aligned_cols=107 Identities=7% Similarity=0.106 Sum_probs=62.9
Q ss_pred HHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhc
Q psy6178 400 FRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK 474 (912)
Q Consensus 400 l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~ 474 (912)
+..+...+. +.++...+.++.+++.++.+-+.. +...++.++.++ .++++.++..++++|+..+..-..
T Consensus 295 i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL----~~~~~~i~~~a~~aL~nl~~~~~~ 368 (529)
T 3tpo_A 295 VPQLVKLLG--ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL----TNPKTNIQKEATWTMSNITAGRQD 368 (529)
T ss_dssp HHHHHHHHT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT----TCSSHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHhc--CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH----cCCCHHHHHHHHHHHHHHhcccHH
Confidence 344444443 455667788999999887652211 122333344433 235788999999999987642111
Q ss_pred CcCcH--HHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhh
Q psy6178 475 HPHTL--ETILNFLLHCLQQ--PGLASVTANALQSISTACCT 512 (912)
Q Consensus 475 ~p~~l--~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~~ 512 (912)
+.+.+ ..+++.++..+.+ ++++..|++||.+++..+..
T Consensus 369 ~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~ 410 (529)
T 3tpo_A 369 QIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV 410 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH
Confidence 11100 1234444444444 34999999999999987543
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.35 E-value=0.74 Score=51.88 Aligned_cols=313 Identities=10% Similarity=0.147 Sum_probs=144.7
Q ss_pred cHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHH-----HHHHHHHHhcCCCC--hHHHHHHHHHHHHHH-
Q psy6178 438 VVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLE-----TILNFLLHCLQQPG--LASVTANALQSISTA- 509 (912)
Q Consensus 438 ~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~-----~~l~~l~~~l~~~~--v~~~A~~al~~l~~~- 509 (912)
.+|.++++|.. ..++.++..++++|+..+.. +++.-. .+++.|+..|.++. ++..|+.||.+++.+
T Consensus 101 ~ip~LV~lL~~---~~~~~lq~~Aa~aL~nias~---~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~ 174 (510)
T 3ul1_B 101 LIPKFVSFLGK---TDCSPIQFESAWALTNIASG---TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 174 (510)
T ss_dssp HHHHHHHHTTC---TTCHHHHHHHHHHHHHHHTS---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHCC---CCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 35555555432 34688999999999887632 222211 35677777777764 999999999999854
Q ss_pred --hhhhhhh--cHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCC
Q psy6178 510 --CCTHMVG--HFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKN 585 (912)
Q Consensus 510 --~~~~L~~--~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~ 585 (912)
++..+.. -++.++..+..-............+..+++.+...-.+.........++. .|.+++... +..
T Consensus 175 ~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp----~L~~LL~~~---~~~ 247 (510)
T 3ul1_B 175 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP----TLVRLLHHN---DPE 247 (510)
T ss_dssp HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHH----HHHHHTTCS---CHH
T ss_pred HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHH----HHHHHHhcC---CHH
Confidence 4444432 34555554432111112223345566667766653322111112222222 233333322 111
Q ss_pred CCCChHHHHHHHHHHhhhcCCCcCCCCCChHH-HHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhchhhHHhHH-
Q psy6178 586 KKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQG-VITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLE- 663 (912)
Q Consensus 586 ~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~- 663 (912)
.......+|+.+..+-. ..... .-..+.|.+..++. ..+..+.+.++++++.+...-.......+.
T Consensus 248 ---v~~~A~~aL~~L~~~~~-------~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~ 315 (510)
T 3ul1_B 248 ---VLADSCWAISYLTDGPN-------ERIEMVVKKGVVPQLVKLLG--ATELPIVTPALRAIGNIVTGTDEQTQKVIDA 315 (510)
T ss_dssp ---HHHHHHHHHHHHTSSCH-------HHHHHHHTTTCHHHHHHHHT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHhhchh-------hhHHHHHhcccchhhhhhhc--CCChhhhhHHHHHHHHhhcCCHHHHHHHhhc
Confidence 11223344444433211 00000 11223455555544 357788888888888765421111000000
Q ss_pred HHHHHHHHHHhcCCCcchHHhHHHHHHHhcC--ccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHHHHHHH
Q psy6178 664 PLVKQIVVLYSKHPHSSFLYLGSILVDEYAT--SHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQ 741 (912)
Q Consensus 664 ~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~--~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~~~~l~ 741 (912)
..++.+... ..++....-..+.+.+..... +.....+.+ ..++.....++.. .++++.......+..+..
T Consensus 316 g~l~~L~~L-L~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~--~g~i~~Lv~lL~~-----~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 316 GALAVFPSL-LTNPKTNIQKEATWTMSNITAGRQDQIQQVVN--HGLVPFLVGVLSK-----ADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp TGGGGCC-C-TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHHHS-----SCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHH-hcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHh--cCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHc
Confidence 000001111 111221111222222222222 111111111 0122333444443 356676666555555655
Q ss_pred hCCcc----ccCchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhhccC
Q psy6178 742 RAPIA----FLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNR 787 (912)
Q Consensus 742 ~~p~~----~l~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~ 787 (912)
.+... +...+.++.+++ -+...+......++..+..++....
T Consensus 388 ~~~~~~~~~L~~~g~i~~L~~----LL~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 388 GGTVEQIVYLVHCGIIEPLMN----LLSAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp HCCHHHHHHHHHTTCHHHHHH----GGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHH----HhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 44211 122233444433 4667788888999999998887653
No 48
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.28 E-value=6.8 Score=46.55 Aligned_cols=172 Identities=10% Similarity=0.056 Sum_probs=90.0
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHhhc---ChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHH-
Q psy6178 10 VYAVVHTLYLNPNKTEKEKASQWLHQLQK---SIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHV- 85 (912)
Q Consensus 10 v~~al~~l~~~~~~~~~~~A~~~L~~~q~---s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~- 85 (912)
+...++.|.++ +.+.|+.|-+.|....+ ...+|.....+|.. .+ +.+|-.|+.+|.+-.... +.+.
T Consensus 117 i~~lv~~L~~~-~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~-~d--~~vr~~A~~~L~~L~~~~------~~~~~ 186 (780)
T 2z6g_A 117 HPTNVQRLAEP-SQMLKHAVVNLINYQDDAELATRAIPELTKLLND-ED--QVVVNKAAVMVHQLSKKE------ASRHA 186 (780)
T ss_dssp ---------CC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SC--HHHHHHHHHHHHHHHTSH------HHHHH
T ss_pred HHHHHHHhcCc-cHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCC-CC--HHHHHHHHHHHHHHhCCC------hhHHH
Confidence 45566666554 55666666666543211 25578888888885 34 899999999998755432 1111
Q ss_pred -----HHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhcc-----CcchHHHHHHHHhccc--chHHHHHHHHhhhhh
Q psy6178 86 -----SLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS-----AWEKPVVYIIEKLSHK--GSILALLEVLTVLPE 153 (912)
Q Consensus 86 -----~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~~-----~W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~e 153 (912)
.+-..|++.+.. ...+ .++...+.+|..+..... .-.+.++.++..++++ ......+..|..|+.
T Consensus 187 i~~~~~~i~~Lv~~L~~--~~d~-~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 263 (780)
T 2z6g_A 187 IMRSPQMVSAIVRTMQN--TNDV-ETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL 263 (780)
T ss_dssp HTTCHHHHHHHHHHHHH--CCCH-HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHhccChHHHHHHHHcC--CCCH-HHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 223334444433 1233 677777778777654321 1125777788877765 334455666666654
Q ss_pred hcccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHhhc
Q psy6178 154 EVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS 208 (912)
Q Consensus 154 e~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~sWi 208 (912)
.... .+ ..+.. ..++..|...+.+. +.+++..++.|+..|.
T Consensus 264 ~~~~------~~----~~v~~--~g~v~~Lv~lL~~~--~~~v~~~a~~aL~~La 304 (780)
T 2z6g_A 264 HQEG------AK----MAVRL--AGGLQKMVALLNKT--NVKFLAITTDCLQILA 304 (780)
T ss_dssp HSTT------HH----HHHHH--TTHHHHHHHGGGCC--CHHHHHHHHHHHHHHH
T ss_pred CChh------hH----HHHHH--cCCHHHHHHHHhcC--CHHHHHHHHHHHHHHh
Confidence 3211 11 11211 12344444555542 4567777777777654
No 49
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.24 E-value=1.2 Score=50.21 Aligned_cols=107 Identities=10% Similarity=0.121 Sum_probs=61.9
Q ss_pred HHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHH-----HHHhcCCCCchHHHHHHHHHHHHHHHHHHhc
Q psy6178 400 FRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVV-----EAILHLPPSTHIAVRYTSLLLLGELCEWIDK 474 (912)
Q Consensus 400 l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~-----~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~ 474 (912)
+..+...+. +.+....+.++.+++.++.+-. .....++ +.+.++..++++.++..++++++..+..-..
T Consensus 276 i~~Lv~lL~--~~~~~v~~~al~aL~nl~~~~~----~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~ 349 (510)
T 3ul1_B 276 VPQLVKLLG--ATELPIVTPALRAIGNIVTGTD----EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 349 (510)
T ss_dssp HHHHHHHHT--CSCHHHHHHHHHHHHHHTTSCH----HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred chhhhhhhc--CCChhhhhHHHHHHHHhhcCCH----HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH
Confidence 334444443 4556667888888888875421 1122222 2233333456789999999999987642111
Q ss_pred CcCcH--HHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhh
Q psy6178 475 HPHTL--ETILNFLLHCLQQ--PGLASVTANALQSISTACCT 512 (912)
Q Consensus 475 ~p~~l--~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~~ 512 (912)
+.+.+ ..+++.++..+.+ ++++..|++||.+++..+..
T Consensus 350 ~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~ 391 (510)
T 3ul1_B 350 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV 391 (510)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH
Confidence 11100 1234444554544 45999999999999987543
No 50
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.23 E-value=0.5 Score=53.57 Aligned_cols=310 Identities=10% Similarity=0.153 Sum_probs=144.8
Q ss_pred CcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcH--HHHHHHHHHhcCCCC--hHHHHHHHHHHHHHH---
Q psy6178 437 DVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTL--ETILNFLLHCLQQPG--LASVTANALQSISTA--- 509 (912)
Q Consensus 437 ~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l--~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~--- 509 (912)
..+|.+++.+.. +.++.++..++++|+..+..-..+...+ ..+++.|+.-+.++. ++..|+.||.+++.+
T Consensus 119 G~ip~Lv~lL~~---~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 119 GLIPKFVSFLGK---TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp THHHHHHHHHTC---TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHcC---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH
Confidence 346666666533 2468899999999988764211111111 135677777777654 999999999999854
Q ss_pred hhhhhhh--cHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCC
Q psy6178 510 CCTHMVG--HFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKK 587 (912)
Q Consensus 510 ~~~~L~~--~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~ 587 (912)
++..+.. -++.++..+..-............+..+++.+...-.+.........+ +..|..++... +..
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~----lp~L~~LL~~~---~~~-- 266 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI----LPTLVRLLHHN---DPE-- 266 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHH----HHHHHHHTTSS---CHH--
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhH----HHHHHHHhcCC---cHH--
Confidence 4544442 345555444211111122233455666666666543221111122222 22233333322 111
Q ss_pred CChHHHHHHHHHHhhhcCCCcCCCCCChH-HHHHhHhHHHHHHHHhhccchhHHHHHHHHHHHHHHHhch--------hh
Q psy6178 588 SDPVIWLDRLAAIFKHTSPRIMSEPHPCQ-GVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGK--------DF 658 (912)
Q Consensus 588 ~~~~~~l~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~--------~~ 658 (912)
.......+|+.+..+-.. ... .+...++|.+..++. ..+..+.+.++++++.++..-.. ..
T Consensus 267 -v~~~a~~aL~~l~~~~~~-------~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~ 336 (529)
T 3tpo_A 267 -VLADSCWAISYLTDGPNE-------RIEMVVKKGVVPQLVKLLG--ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 336 (529)
T ss_dssp -HHHHHHHHHHHHHSSCHH-------HHHHHHTTTCHHHHHHHHT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTG
T ss_pred -HHHHHHHHHHHhhhhhhh-------hHHHHHhccchHHHHHHhc--CCChhHHHHHHHHHHHHHccchHHHHHHhhccc
Confidence 112233344444332110 000 011233455555544 35778888888888877532111 11
Q ss_pred HHhHHHHHHHHHHHHhcCCCcchHHhHHHHHHHh--cCccchHHHHHHHHHHhHHHHHhhcCcCCCCCCCchHHHHHHHH
Q psy6178 659 AHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEY--ATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLC 736 (912)
Q Consensus 659 ~p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~--g~~~~~~~l~~l~~~l~~~~~~~l~~~~~~~~~pd~~~~~f~l~ 736 (912)
.|.+..++ . ++....-.-+.+.+... |.+.....+.+ ..++.....++.. .++++.......+
T Consensus 337 l~~L~~LL-------~-~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~--~g~i~~Lv~lL~~-----~~~~v~~~A~~aL 401 (529)
T 3tpo_A 337 LAVFPSLL-------T-NPKTNIQKEATWTMSNITAGRQDQIQQVVN--HGLVPFLVGVLSK-----ADFKTQKAAAWAI 401 (529)
T ss_dssp GGGHHHHT-------T-CSSHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTHHHHHHHHHHS-----SCHHHHHHHHHHH
T ss_pred HHHHHHHH-------c-CCCHHHHHHHHHHHHHHhcccHHHHHHHHh--cCcHHHHHHHhcC-----CCHHHHHHHHHHH
Confidence 22222111 1 22211111122222211 11111111111 0122333444443 3566766655555
Q ss_pred HHHHHhCC-cc---ccCchhhHHHHHHHHHhcccCCchhHHHHHHHHHHHhhccC
Q psy6178 737 TRFLQRAP-IA---FLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNR 787 (912)
Q Consensus 737 ~~~l~~~p-~~---~l~~~~l~~i~~~~~~~l~~~~~~~~~~~~~fl~~li~~~~ 787 (912)
..+...+. .. +...+.+..+++ -+...+......++..+..++....
T Consensus 402 ~nl~~~~~~~~~~~l~~~g~i~~L~~----LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 402 TNYTSGGTVEQIVYLVHCGIIEPLMN----LLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHHHSCHHHHHHHHHTTCHHHHHH----GGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHCcCHHHHHH----HhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 55555432 11 122233344433 4667788888899999988887653
No 51
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.08 E-value=7.7 Score=46.07 Aligned_cols=126 Identities=15% Similarity=0.193 Sum_probs=77.5
Q ss_pred ccCCChhhHHHHHHHHHHhhc----------ChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHHH-
Q psy6178 18 YLNPNKTEKEKASQWLHQLQK----------SIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVS- 86 (912)
Q Consensus 18 ~~~~~~~~~~~A~~~L~~~q~----------s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~~- 86 (912)
....|+..|+.|-.-|..+-. .+++......+|....+ ..+|..|+..|++ +... ++.+..
T Consensus 159 L~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d--~~vr~~Aa~aL~~-Ls~~-----~~~~~~i 230 (780)
T 2z6g_A 159 LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND--VETARCTSGTLHN-LSHH-----REGLLAI 230 (780)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHH-HHTS-----HHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCC--HHHHHHHHHHHHH-HhCC-----chhHHHH
Confidence 335688899999999888765 34566666777776545 8999999999998 4432 122222
Q ss_pred HHHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhccC------cchHHHHHHHHhccc--chHHHHHHHHhhhh
Q psy6178 87 LRDSLIEHLCRTND-TSGKNIITQLALALADLALQMSA------WEKPVVYIIEKLSHK--GSILALLEVLTVLP 152 (912)
Q Consensus 87 lk~~Ll~~l~~~~~-~~~~~v~~kl~~~la~l~~~~~~------W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~ 152 (912)
.+...+..|...-. +. ..++...+.+|..+...... =.+.++.++..+.++ ......+..|..+.
T Consensus 231 ~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La 304 (780)
T 2z6g_A 231 FKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 304 (780)
T ss_dssp HHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 22234444444322 33 36888888888888765331 135677788877654 22334444555444
No 52
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.00 E-value=1.3 Score=44.32 Aligned_cols=136 Identities=13% Similarity=0.135 Sum_probs=92.5
Q ss_pred chhhhhhhHHHHHHHhcccCchhhhhcchHH-HHHHHHHHHhhcCCCCCCCCCccccchHHHHHhHhHHHHHhhhHhcCc
Q psy6178 318 VASITFRLWYRLSEILYVKNDDSLTVLFKPH-VERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGS 396 (912)
Q Consensus 318 vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~-~~~ll~~l~~k~~~p~d~~~~~ee~~~f~~~R~~~~d~l~~~~~~l~~ 396 (912)
+...++++...+.+.+.+.. ..+.++ ...+++.++.|+- | .++ .+|..+.++++.++.+.++
T Consensus 103 v~~~~L~~L~~l~~~l~~~~-----y~~~~~ea~~~lP~LveKlG-------d--~k~---~vR~~~r~il~~l~~v~~~ 165 (266)
T 2of3_A 103 ALIKVLELCKVIVELIRDTE-----TPMSQEEVSAFVPYLLLKTG-------E--AKD---NMRTSVRDIVNVLSDVVGP 165 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----CCCCHHHHHHHHHHHHHGGG-------C--SSH---HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHhcc-----ccchHHHHHHHHHHHHHHhC-------C--ChH---HHHHHHHHHHHHHHHHCCH
Confidence 77888999888877665421 112222 3567788888882 1 122 4677788888888888888
Q ss_pred HHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 397 STCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 397 ~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
..++..+.+.+. +.+|+.+|.++..+.++-+.........+ .+.+.+.++-.+.+..||.+|+.++.....+..
T Consensus 166 ~~v~~~l~~g~k--sKN~R~R~e~l~~l~~li~~~G~~~~~~l-~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 166 LKMTPMLLDALK--SKNARQRSECLLVIEYYITNAGISPLKSL-SVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHCSGGGGGG-CHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHhcCCCccccc-cchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 778888887774 56799999999999988876544322222 000455555556789999999999887665553
No 53
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.99 E-value=0.056 Score=54.38 Aligned_cols=226 Identities=16% Similarity=0.132 Sum_probs=121.6
Q ss_pred HHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhc
Q psy6178 400 FRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK 474 (912)
Q Consensus 400 l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~ 474 (912)
++.+.+.+.++ +....+.++.+++.++..-+.. +...++.+++.+ .+.++.++..++++++..+..
T Consensus 4 i~~L~~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll----~~~~~~v~~~a~~~L~~l~~~--- 74 (252)
T 4hxt_A 4 VEKLVKLLTST--DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL----TSTDSEVQKEAARALANIASG--- 74 (252)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT----TCSCHHHHHHHHHHHHHHTTS---
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH----hCCCHHHHHHHHHHHHHHHcC---
Confidence 44555556433 3555677888888887753211 123445555544 234689999999999887642
Q ss_pred CcCcHH-----HHHHHHHHhcCCC--ChHHHHHHHHHHHHHH---hhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHH
Q psy6178 475 HPHTLE-----TILNFLLHCLQQP--GLASVTANALQSISTA---CCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKG 544 (912)
Q Consensus 475 ~p~~l~-----~~l~~l~~~l~~~--~v~~~A~~al~~l~~~---~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~ea 544 (912)
+++.-. ..++.++..+.++ +++..|+.+|.++|.. .+..+... ..+..+..+... -+.+.+.....+
T Consensus 75 ~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~~l~~-~~~~~~~~a~~~ 151 (252)
T 4hxt_A 75 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA--GGVEVLVKLLTS-TDSEVQKEAARA 151 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHHTTC-SCHHHHHHHHHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHcC-CCHHHHHHHHHH
Confidence 122111 3466666666664 4999999999999943 23333221 223333333222 245567888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHH-HHhHh
Q psy6178 545 VAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGV-ITELW 623 (912)
Q Consensus 545 i~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~-~~~~~ 623 (912)
++.+...-+ +....... ...+..|..++... +. ......+..|+.+..+-. .....+ -...+
T Consensus 152 L~~l~~~~~-~~~~~~~~---~~~i~~L~~ll~~~---~~---~v~~~a~~~L~~l~~~~~-------~~~~~l~~~~~i 214 (252)
T 4hxt_A 152 LANIASGPD-EAIKAIVD---AGGVEVLVKLLTST---DS---EVQKEAARALANIASGPT-------SAIKAIVDAGGV 214 (252)
T ss_dssp HHHHTTSCH-HHHHHHHH---TTHHHHHHHHTTCS---CH---HHHHHHHHHHHHHTTSBH-------HHHHHHHHTTHH
T ss_pred HHHHHcCCH-HHHHHHHH---CcCHHHHHHHHCCC---CH---HHHHHHHHHHHHHHcCCH-------HHHHHHHHCCCH
Confidence 888876532 22111111 22333333444321 11 111234555666554211 011111 12345
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHhch
Q psy6178 624 PVLSKTCETYQQDARVMEHSSRCLRYAIRCVGK 656 (912)
Q Consensus 624 ~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~l~~ 656 (912)
|.+..++. ..++++.+.++.+++.+...-+.
T Consensus 215 ~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 215 EVLQKLLT--STDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHGGG--CSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHC--CCcHHHHHHHHHHHHHHHcCCCc
Confidence 55555544 35788999999999998775443
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.89 E-value=0.12 Score=61.76 Aligned_cols=192 Identities=14% Similarity=0.208 Sum_probs=128.8
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCCccccchHHHHHhHhHHHHHhhhHhcCcH---HHHHHHHHHhhcCCCCccchhHHH
Q psy6178 345 FKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSS---TCFRHMFNSLHENNVMWEQTEAAL 421 (912)
Q Consensus 345 ~~~~~~~ll~~l~~k~~~p~d~~~~~ee~~~f~~~R~~~~d~l~~~~~~l~~~---~~l~~l~~~l~~~~~~w~~~Ea~L 421 (912)
+.|++..+++.++..+. | ++ ...|.........++..+.+. .++..++..+. ....|+...++|
T Consensus 89 ~e~~~~~~~~~~~~~~~---d-------k~--~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~kw~~k~~~l 155 (986)
T 2iw3_A 89 VEPYIVQLVPAICTNAG---N-------KD--KEIQSVASETLISIVNAVNPVAIKALLPHLTNAIV-ETNKWQEKIAIL 155 (986)
T ss_dssp THHHHHTTHHHHHHHTT---C-------SS--HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHH-HCCCHHHHHHHH
T ss_pred cccchHHHHHHHHHHhc---C-------Cc--hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-cccchHHHHHHH
Confidence 45666667777766652 1 11 245666666666677776664 35666666664 345799999999
Q ss_pred HHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhc---------------CcCc--------
Q psy6178 422 YIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK---------------HPHT-------- 478 (912)
Q Consensus 422 ~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~---------------~p~~-------- 478 (912)
-++..+++..+......++.+++.+...-.+..+.|..++..++-.+|.-+.+ +|+-
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l 235 (986)
T 2iw3_A 156 AAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLL 235 (986)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHh
Confidence 99999999875434566888888877665567888888888888877765543 2322
Q ss_pred -------------HHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhh--hhhhhcHHHHHHHHHHhhhcCCChHHHHHH
Q psy6178 479 -------------LETILNFLLHCLQQPG--LASVTANALQSISTACC--THMVGHFNGLLQIIQCLDTLSISNDAAIGL 541 (912)
Q Consensus 479 -------------l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~--~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l 541 (912)
|.-+.+.|.++|.++. +.+.++--+.++|+-.. ....||+|.++..+......--.++.|+..
T Consensus 236 ~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~ 315 (986)
T 2iw3_A 236 GATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVT 315 (986)
T ss_dssp TTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHH
T ss_pred hcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHH
Confidence 3344566667777654 66788888888886543 357788888888887755543445666655
Q ss_pred HHHHHHHH
Q psy6178 542 LKGVAIIV 549 (912)
Q Consensus 542 ~eai~~vi 549 (912)
-.|+..+.
T Consensus 316 ~~a~~~l~ 323 (986)
T 2iw3_A 316 LRALKTLR 323 (986)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555553
No 55
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.69 E-value=13 Score=46.64 Aligned_cols=128 Identities=15% Similarity=0.171 Sum_probs=74.2
Q ss_pred HHhHhHHHHHhhhHhcCc---HHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCC--------------cCcHHH
Q psy6178 379 FRLKVSELVKDVVFIVGS---STCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEE--------------NDVVPK 441 (912)
Q Consensus 379 ~R~~~~d~l~~~~~~l~~---~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~--------------~~~l~~ 441 (912)
.|..++.++..+...-.+ ..++..+.+.+.+ +-...|.++.+|..+.|.+...+ .+.++.
T Consensus 112 vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~---~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~ 188 (1204)
T 3a6p_A 112 IKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ---GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMER 188 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHH
Confidence 455666665555443222 1355555555542 11336778888888876532211 112334
Q ss_pred HHHHHhcCCC-------------------CchHHHHHHHHHHHHHHHHHHhcCc--CcHHHHHHHHHHhcCCCChHHHHH
Q psy6178 442 VVEAILHLPP-------------------STHIAVRYTSLLLLGELCEWIDKHP--HTLETILNFLLHCLQQPGLASVTA 500 (912)
Q Consensus 442 l~~~l~~~~~-------------------~~~~~v~~t~~~~lg~y~~~l~~~p--~~l~~~l~~l~~~l~~~~v~~~A~ 500 (912)
++..+.++-. ..++.++..++.++++|..|+..+- +.-..+++.++..+.+++++..|+
T Consensus 189 I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ 268 (1204)
T 3a6p_A 189 IFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAA 268 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCCHHHHHHHH
Confidence 4443221110 1245688889999999988864210 111246777777788899999999
Q ss_pred HHHHHHHHH
Q psy6178 501 NALQSISTA 509 (912)
Q Consensus 501 ~al~~l~~~ 509 (912)
.+|..++..
T Consensus 269 ecL~~i~s~ 277 (1204)
T 3a6p_A 269 ECLLIAVSR 277 (1204)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 999999864
No 56
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.61 E-value=4 Score=43.94 Aligned_cols=275 Identities=9% Similarity=0.089 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhc
Q psy6178 454 HIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTL 531 (912)
Q Consensus 454 ~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~ 531 (912)
.+...+-+..+|.+|.. ..|++-..+++.++.-..+.+ ++..|.+.|-.||++ .+++-+.+.+.++.+.
T Consensus 41 ~~k~K~LaaQ~I~kffk---~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqt 111 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFK---HFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQT 111 (507)
T ss_dssp CHHHHHHHHHHHHHHGG---GCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHh---hChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhc
Confidence 57778888888876554 458888899998888777655 777777777777766 3455555555555443
Q ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hHHHHHHHHHhcC--CCCCCCC---------------CC-h
Q psy6178 532 SISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLV---QVKPLCELIEKQI--KPEKNKK---------------SD-P 590 (912)
Q Consensus 532 ~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p---~~~~l~~~~~~~~--~~~~~~~---------------~~-~ 590 (912)
-...+...+-.++..++..-|.......+.++... +-+++-+-+.... -+.+... .+ .
T Consensus 112 -dd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT 190 (507)
T 3u0r_A 112 -DDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVT 190 (507)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCC
T ss_pred -cchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcccc
Confidence 12223334444555555443322222222222221 0001111111000 0000000 00 0
Q ss_pred HHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHh---h-ccchhHHHHHHHHHHHHHHHhc--hhhHHhHHH
Q psy6178 591 VIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCET---Y-QQDARVMEHSSRCLRYAIRCVG--KDFAHLLEP 664 (912)
Q Consensus 591 ~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~-~~~~~v~e~~~~~~~~~~~~l~--~~~~p~l~~ 664 (912)
......+-.+.+.+.... . ..=.+++.+++....+. | +.|.+.+++...|+++++-.+. .+...|+.-
T Consensus 191 ~~EF~L~m~lL~~lkl~~---t---~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y 264 (507)
T 3u0r_A 191 GEEFVLFMKILSGLKSLQ---T---VSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTY 264 (507)
T ss_dssp HHHHHHHHHHHHTSGGGS---S---HHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHH
T ss_pred HHHHHHHHHHHHhccccc---C---chHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHH
Confidence 112333333334333221 1 12235666666665443 2 2689999999999999876653 345667777
Q ss_pred HHHHHHHHHhcCCCc-----chHHhHHHHHHHh---cC-ccchHHHHHHHHHHhHHHHHhhcCcCCC--------CCCCc
Q psy6178 665 LVKQIVVLYSKHPHS-----SFLYLGSILVDEY---AT-SHCVSGLLDMVQAFLPPTYAILQEEDGL--------KNHPD 727 (912)
Q Consensus 665 l~~~l~~~~~~~~~~-----~~L~~~~~lv~~~---g~-~~~~~~l~~l~~~l~~~~~~~l~~~~~~--------~~~pd 727 (912)
+++.++-.+..-+.+ --|.++..+.+.- |. +.....+..++ ...+..+...+.- .+.|.
T Consensus 265 ~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy----~~L~~ymP~~p~~~~~~~~~~~~~p~ 340 (507)
T 3u0r_A 265 FCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLF----DKLLEYMPLPPEEAENGENAGNEEPK 340 (507)
T ss_dssp HHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHH----HHHHTTSCCCC--------------C
T ss_pred HHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHH----HHHHHHCCCCcccccccccccccCcc
Confidence 777777666544333 3456666554422 32 22222233222 2222222211000 12233
Q ss_pred ----hHHHHHHHHHHHHHhCCcccc
Q psy6178 728 ----TVDDLFRLCTRFLQRAPIAFL 748 (912)
Q Consensus 728 ----~~~~~f~l~~~~l~~~p~~~l 748 (912)
-++.+.-.++++.+++|..+.
T Consensus 341 l~fS~vECLLy~fH~L~~k~P~~l~ 365 (507)
T 3u0r_A 341 LQFSYVECLLYSFHQLGRKLPDFLT 365 (507)
T ss_dssp CCHHHHHHHHHHHHHHHTTCTHHHH
T ss_pred cchhHHHHHHHHHHHHhhhChhhhc
Confidence 356666677788888886653
No 57
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=93.76 E-value=0.32 Score=50.21 Aligned_cols=208 Identities=10% Similarity=0.088 Sum_probs=104.5
Q ss_pred hhHHHHHHHHhhcccCCCC----cCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCc---------CcHHHHH
Q psy6178 417 TEAALYIMQSVAKNVLPEE----NDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHP---------HTLETIL 483 (912)
Q Consensus 417 ~Ea~L~~l~~iae~~~~~~----~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p---------~~l~~~l 483 (912)
.+.++..|..+.+..+... ...++.++. ++..++++.+|..++++||..+. .+| .-+++++
T Consensus 57 k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~---~lL~s~~~~vr~~Aa~~Lg~ia~---~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 57 REGALELLADLCENMDNAADFCQLSGMHLLVG---RYLEAGAAGLRWRAAQLIGTCSQ---NVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHH---TTTTCSSHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHcCCHHHHHH---HHHcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHCCCHHHHH
Confidence 3445555555555432100 123444444 13334579999999999998763 222 2344444
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhhh---hh--hcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHH
Q psy6178 484 NFLLHCLQQPGLASVTANALQSISTACCTH---MV--GHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQIS 558 (912)
Q Consensus 484 ~~l~~~l~~~~v~~~A~~al~~l~~~~~~~---L~--~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~ 558 (912)
..+-+. .++.++..|++||.++|...... +. +-++.++..+. + -+...+.....++++++..- ++...
T Consensus 131 ~LL~~~-~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~---~--~d~~v~~~A~~aLs~L~~~~-~~~~~ 203 (296)
T 1xqr_A 131 RLLDRD-ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ---Q--QVQKLKVKSAFLLQNLLVGH-PEHKG 203 (296)
T ss_dssp HHHHHC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH---S--SCHHHHHHHHHHHHHHHHHC-GGGHH
T ss_pred HHHccC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc---C--CCHHHHHHHHHHHHHHHhCC-hHHHH
Confidence 443321 12358999999999999754432 22 22344443332 2 25567888889999988763 23222
Q ss_pred HHH-HHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcC---CCCCChHHHHHhHhHHHHHHHHhhc
Q psy6178 559 EAL-KQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIM---SEPHPCQGVITELWPVLSKTCETYQ 634 (912)
Q Consensus 559 ~~l-~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~ 634 (912)
... ...+.+++ .++... +. ......+..|+.+.++...... .....+..++++. +.. +....
T Consensus 204 ~vv~~g~i~~Lv----~LL~~~---d~---~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~---~~~-lq~~e 269 (296)
T 1xqr_A 204 TLCSMGMVQQLV----ALVRTE---HS---PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR---CQL-LQQHE 269 (296)
T ss_dssp HHHHTTHHHHHH----HHHTSC---CS---THHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH---HHH-HTTCG
T ss_pred HHHHcCCHHHHH----HHHcCC---Ch---hHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHH---HHH-ccchH
Confidence 221 12333333 444432 21 1223467777777765211000 0011233333332 111 11111
Q ss_pred cchhHHHHHHHHHHHHH
Q psy6178 635 QDARVMEHSSRCLRYAI 651 (912)
Q Consensus 635 ~~~~v~e~~~~~~~~~~ 651 (912)
...++++.+..++...+
T Consensus 270 ~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 270 EYQEELEFCEKLLQTCF 286 (296)
T ss_dssp GGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 24677788777777665
No 58
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=93.46 E-value=0.12 Score=50.35 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=80.1
Q ss_pred CCCccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcH--HHHH
Q psy6178 411 NVMWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTL--ETIL 483 (912)
Q Consensus 411 ~~~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l--~~~l 483 (912)
+.++...+.++.+++.++.+-... +...++.+++.+ .++++.++..++++++..+..-..+.+.+ ...+
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL----~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 98 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL----SSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT----TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH----cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCH
Confidence 455677788999999998653211 123445555544 23478999999999998763111110000 1234
Q ss_pred HHHHHhcCCC--ChHHHHHHHHHHHHHHhhhhhhhcH-HHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcC
Q psy6178 484 NFLLHCLQQP--GLASVTANALQSISTACCTHMVGHF-NGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDM 552 (912)
Q Consensus 484 ~~l~~~l~~~--~v~~~A~~al~~l~~~~~~~L~~~~-~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~ 552 (912)
+.++..+.++ .++..|+.++.+++........... ...+..+..+... -+.+.+...+.+++.++..-
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCC
Confidence 5555556654 4999999999999964332211111 1233333333322 25567888899999988754
No 59
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=92.16 E-value=0.16 Score=51.02 Aligned_cols=142 Identities=15% Similarity=0.199 Sum_probs=85.0
Q ss_pred HHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCC-----cCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 399 CFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEE-----NDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 399 ~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~-----~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
.++.+...+..+ +....+.++.+++.++.+-+... ...++.++..+. ++++.++..++++++.++..-.
T Consensus 55 ~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~ 128 (252)
T 4db8_A 55 ALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS----SPNEQILQEALWALSNIASGGN 128 (252)
T ss_dssp HHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG----CSCHHHHHHHHHHHHHHTTSCH
T ss_pred cHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHHhhcCCc
Confidence 455666666533 35667888889998887532211 223444544442 3468999999999998764211
Q ss_pred cC-cCcH-HHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhh---hhh--hcHHHHHHHHHHhhhcCCChHHHHHHHHH
Q psy6178 474 KH-PHTL-ETILNFLLHCLQQP--GLASVTANALQSISTACCT---HMV--GHFNGLLQIIQCLDTLSISNDAAIGLLKG 544 (912)
Q Consensus 474 ~~-p~~l-~~~l~~l~~~l~~~--~v~~~A~~al~~l~~~~~~---~L~--~~~~~ll~~~~~l~~~~~~~~~~~~l~ea 544 (912)
.. .... ..+++.++..+.++ .++..|+.+|.+++..... .+. ..++.++..+ .. -+.+.+...+.+
T Consensus 129 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll----~~-~~~~v~~~a~~~ 203 (252)
T 4db8_A 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL----SS-PNEQILQEALWA 203 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGG----GC-SSHHHHHHHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH----CC-CCHHHHHHHHHH
Confidence 11 0011 13566666666664 4899999999999964322 221 2334444332 22 245568888889
Q ss_pred HHHHHhc
Q psy6178 545 VAIIVSD 551 (912)
Q Consensus 545 i~~vi~~ 551 (912)
++.++..
T Consensus 204 L~~l~~~ 210 (252)
T 4db8_A 204 LSNIASG 210 (252)
T ss_dssp HHHHTTS
T ss_pred HHHHhcC
Confidence 9888754
No 60
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=92.15 E-value=0.61 Score=48.07 Aligned_cols=143 Identities=15% Similarity=0.104 Sum_probs=86.1
Q ss_pred HHHHHH-HhhcCCCCccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 400 FRHMFN-SLHENNVMWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 400 l~~l~~-~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
++.+.. .|. +++-...+.|.++++.++..-+.. +...++.+++++..- +++.++..++++|+..+.-..
T Consensus 83 l~~Lv~~lL~--s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~---~~~~v~~~A~~ALsnl~~~~~ 157 (296)
T 1xqr_A 83 MHLLVGRYLE--AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD---ACDTVRVKALFAISCLVREQE 157 (296)
T ss_dssp HHHHHHTTTT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC---CCHHHHHHHHHHHHHHHcCCc
Confidence 455555 454 334456789999999988653211 134567777776432 257899999999998763211
Q ss_pred cCcC-cH-HHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhh---hhh--hcHHHHHHHHHHhhhcCCChHHHHHHHHH
Q psy6178 474 KHPH-TL-ETILNFLLHCLQQ--PGLASVTANALQSISTACCT---HMV--GHFNGLLQIIQCLDTLSISNDAAIGLLKG 544 (912)
Q Consensus 474 ~~p~-~l-~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~~---~L~--~~~~~ll~~~~~l~~~~~~~~~~~~l~ea 544 (912)
..++ +. ...++.++..+.+ +.++..|+.+|.+++..-.. .+. ..++.++.. ... -+.+.++....+
T Consensus 158 ~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~L----L~~-~d~~v~~~al~a 232 (296)
T 1xqr_A 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL----VRT-EHSPFHEHVLGA 232 (296)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHH----HTS-CCSTHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHH----HcC-CChhHHHHHHHH
Confidence 1111 11 1234444444444 45999999999999976322 222 123334433 222 244578899999
Q ss_pred HHHHHhcC
Q psy6178 545 VAIIVSDM 552 (912)
Q Consensus 545 i~~vi~~~ 552 (912)
++.++...
T Consensus 233 L~~l~~~~ 240 (296)
T 1xqr_A 233 LCSLVTDF 240 (296)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhCC
Confidence 99998774
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.49 E-value=1.8 Score=41.44 Aligned_cols=122 Identities=15% Similarity=0.177 Sum_probs=77.2
Q ss_pred CcHHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhc
Q psy6178 395 GSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK 474 (912)
Q Consensus 395 ~~~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~ 474 (912)
+....+..+...+. +.+|.....++.+++.++. ...++.++..+ .++++.+|..+++.+|.+.
T Consensus 42 ~~~~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~----- 104 (201)
T 3ltj_A 42 GDERAVEPLIKALK--DEDAWVRRAAADALGQIGD------ERAVEPLIKAL----KDEDGWVRQSAAVALGQIG----- 104 (201)
T ss_dssp CCGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC------GGGHHHHHHHT----TCSSHHHHHHHHHHHHHHC-----
T ss_pred CChhHHHHHHHHHc--CCCHHHHHHHHHHHHhhCC------HHHHHHHHHHH----cCCCHHHHHHHHHHHHHhC-----
Confidence 44335666776664 4566667788888877653 24566666654 2357899999999999864
Q ss_pred CcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q psy6178 475 HPHTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAII 548 (912)
Q Consensus 475 ~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~v 548 (912)
.++.+ +.+...+.+++ |+..|+.++.++.. . ..++.+...+ .+ -+...|..++++++.+
T Consensus 105 ~~~~~----~~L~~~l~d~~~~vr~~a~~aL~~~~~---~---~~~~~L~~~l---~d--~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 105 DERAV----EPLIKALKDEDWFVRIAAAFALGEIGD---E---RAVEPLIKAL---KD--EDGWVRQSAADALGEI 165 (201)
T ss_dssp CGGGH----HHHHHHTTCSSHHHHHHHHHHHHHHTC---G---GGHHHHHHHT---TC--SSHHHHHHHHHHHHHH
T ss_pred cHHHH----HHHHHHHcCCCHHHHHHHHHHHHHhCC---H---HHHHHHHHHH---cC--CCHHHHHHHHHHHHHh
Confidence 34444 44455566654 88999999988742 1 2223333222 12 2455788888888886
No 62
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.82 E-value=1.8 Score=41.79 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=77.7
Q ss_pred CcHHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhc
Q psy6178 395 GSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK 474 (912)
Q Consensus 395 ~~~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~ 474 (912)
|.+..+..+...+. +.++.....++.+++.+++ ...++.++..+ .++++.||..+++.+|.+.
T Consensus 47 ~~~~~~~~L~~~l~--~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l----~~~~~~vr~~a~~aL~~~~----- 109 (211)
T 3ltm_A 47 GDERAVEPLIKALK--DEDAWVRRAAADALGQIGD------ERAVEPLIKAL----KDEDGWVRQSAAVALGQIG----- 109 (211)
T ss_dssp CCGGGHHHHHHHTT--CSCHHHHHHHHHHHHHHCC------GGGHHHHHHHT----TCSSHHHHHHHHHHHHHHC-----
T ss_pred CCccHHHHHHHHHc--CCCHHHHHHHHHHHHhhCC------HHHHHHHHHHH----cCCCHHHHHHHHHHHHHhC-----
Confidence 44345666776665 4567777788888887753 34566666654 3457899999999999864
Q ss_pred CcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q psy6178 475 HPHTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAII 548 (912)
Q Consensus 475 ~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~v 548 (912)
.++. ++.+...+.+++ |+..|+.+|.++... ..++.+...+ .+ -+...+...+++++.+
T Consensus 110 ~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~l---~d--~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 110 DERA----VEPLIKALKDEDWFVRIAAAFALGEIGDE------RAVEPLIKAL---KD--EDGWVRQSAADALGEI 170 (211)
T ss_dssp CGGG----HHHHHHHTTCSSHHHHHHHHHHHHHHCCG------GGHHHHHHHT---TC--SSHHHHHHHHHHHHHH
T ss_pred cHHH----HHHHHHHHhCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHH---cC--CCHHHHHHHHHHHHHh
Confidence 3444 444555566655 899999999887421 1223333222 12 2445678888888876
No 63
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=90.73 E-value=4.4 Score=41.05 Aligned_cols=145 Identities=12% Similarity=0.123 Sum_probs=90.8
Q ss_pred HHhHhHHHHHhhhHhcCcHHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhc-CCCCchHHH
Q psy6178 379 FRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILH-LPPSTHIAV 457 (912)
Q Consensus 379 ~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~-~~~~~~~~v 457 (912)
.|......+.. +|.+..+..+...+. +.++.....+..+++.++.. ...++.+++.+.+ +..++++.|
T Consensus 39 vr~~A~~~L~~----~~~~~~~~~L~~~l~--d~~~~vR~~A~~aL~~l~~~-----~~~~~~l~~~L~~~~~~d~~~~v 107 (280)
T 1oyz_A 39 KRISSARVLQL----RGGQDAVRLAIEFCS--DKNYIRRDIGAFILGQIKIC-----KKCEDNVFNILNNMALNDKSACV 107 (280)
T ss_dssp HHHHHHHHHHH----HCCHHHHHHHHHHHT--CSSHHHHHHHHHHHHHSCCC-----TTTHHHHHHHHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHc----cCCchHHHHHHHHHc--CCCHHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHhcCCCHHH
Confidence 44444444433 244446666766664 45566778888888877642 2235555554431 112357899
Q ss_pred HHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCCh
Q psy6178 458 RYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISN 535 (912)
Q Consensus 458 ~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~ 535 (912)
|..+++.+|.+... +|.+-+.+++.+...+.+++ ++..|+.++.++... ..++.++..+. + -+.
T Consensus 108 r~~a~~aL~~l~~~---~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~------~~~~~L~~~l~---d--~~~ 173 (280)
T 1oyz_A 108 RATAIESTAQRCKK---NPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK------ATIPLLINLLK---D--PNG 173 (280)
T ss_dssp HHHHHHHHHHHHHH---CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHT---C--SSH
T ss_pred HHHHHHHHHHHhcc---CCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHc---C--CCH
Confidence 99999999987743 34455677888888888865 889999999877542 13344444332 2 244
Q ss_pred HHHHHHHHHHHHH
Q psy6178 536 DAAIGLLKGVAII 548 (912)
Q Consensus 536 ~~~~~l~eai~~v 548 (912)
..|.....+++.+
T Consensus 174 ~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 174 DVRNWAAFAININ 186 (280)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 5688888888876
No 64
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=90.58 E-value=29 Score=39.97 Aligned_cols=125 Identities=15% Similarity=0.182 Sum_probs=74.7
Q ss_pred cCCChhhHHHHHHHHHHhhcCh----------hHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHHHHH
Q psy6178 19 LNPNKTEKEKASQWLHQLQKSI----------YAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLR 88 (912)
Q Consensus 19 ~~~~~~~~~~A~~~L~~~q~s~----------~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~~lk 88 (912)
...++..|..|-..|.++-..+ ++......+|....+ ++++..|+..|++ +..+ ++.+..+.
T Consensus 24 ~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~--~~~~~~A~~~L~~-Ls~~-----~~~~~~i~ 95 (644)
T 2z6h_A 24 NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND--VETARCTAGTLHN-LSHH-----REGLLAIF 95 (644)
T ss_dssp TCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCC--HHHHHHHHHHHHH-HTTS-----HHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCC--HHHHHHHHHHHHH-HhcC-----hhhHHHHH
Confidence 3568889999999998876543 345555667776545 8899999999985 3322 12222222
Q ss_pred -HHHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhccC------cchHHHHHHHHhcccc--hHHHHHHHHhhhh
Q psy6178 89 -DSLIEHLCRTND-TSGKNIITQLALALADLALQMSA------WEKPVVYIIEKLSHKG--SILALLEVLTVLP 152 (912)
Q Consensus 89 -~~Ll~~l~~~~~-~~~~~v~~kl~~~la~l~~~~~~------W~~~~~~l~~~~~~~~--~~~~~L~iL~~l~ 152 (912)
...+..+...-. +. ..++...+.+|..+...... =.+.++.++..+.+++ .....+..|..+.
T Consensus 96 ~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp TTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 223344433222 33 36888888888888765321 1457777888777651 1223344555554
No 65
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=90.03 E-value=0.8 Score=44.24 Aligned_cols=139 Identities=14% Similarity=0.178 Sum_probs=82.8
Q ss_pred HHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 399 CFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 399 ~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
.++.+.+.+. +.+....+.++.+++.++.+-+.. +...++.++..+ .+.++.++..++++++.++..
T Consensus 55 ~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL----~~~~~~v~~~a~~~L~~l~~~-- 126 (210)
T 4db6_A 55 ALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL----SSPNEQILQEALWALSNIASG-- 126 (210)
T ss_dssp HHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHT----TCSCHHHHHHHHHHHHHHTTS--
T ss_pred CHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH----cCCcHHHHHHHHHHHHHHHcC--
Confidence 3455555554 335667789999999988542211 123556666654 234689999999999987741
Q ss_pred cCcCcH-----HHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhhh---hhhhcHHHHHHHHHHhhhcCCChHHHHHHHH
Q psy6178 474 KHPHTL-----ETILNFLLHCLQQP--GLASVTANALQSISTACCT---HMVGHFNGLLQIIQCLDTLSISNDAAIGLLK 543 (912)
Q Consensus 474 ~~p~~l-----~~~l~~l~~~l~~~--~v~~~A~~al~~l~~~~~~---~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~e 543 (912)
+++.. ..+++.++..+.++ +++..|+.+|.++|..... .+.. .+.+..+..+... -+.+.+.....
T Consensus 127 -~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~-~~~~v~~~a~~ 202 (210)
T 4db6_A 127 -GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE--AGALEKLEQLQSH-ENEKIQKEAQE 202 (210)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTHHHHHHHGGGC-SCHHHHHHHHH
T ss_pred -CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH--CCCHHHHHHHHhC-CCHHHHHHHHH
Confidence 12111 12455566666654 4999999999999965322 2211 1233444443332 24556777777
Q ss_pred HHHHHH
Q psy6178 544 GVAIIV 549 (912)
Q Consensus 544 ai~~vi 549 (912)
+++.+.
T Consensus 203 aL~~l~ 208 (210)
T 4db6_A 203 ALEKLQ 208 (210)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 776653
No 66
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=89.93 E-value=12 Score=34.58 Aligned_cols=210 Identities=11% Similarity=0.165 Sum_probs=127.6
Q ss_pred HHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcC
Q psy6178 398 TCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPH 477 (912)
Q Consensus 398 ~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~ 477 (912)
.++..+...| -+.-|...--++..+..+++..++-.++.+.+++.++...- .-.+.+..-..+|..+. -+|+
T Consensus 32 ~~l~~lI~~L--DDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksE---aIpltqeIa~a~G~la~---i~Pe 103 (253)
T 2db0_A 32 SVLKKLIELL--DDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSE---AIPLTQEIAKAFGQMAK---EKPE 103 (253)
T ss_dssp HHHHHHHHHT--TCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHH---HCHH
T ss_pred HHHHHHHHHh--ccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc---cCchHHHHHHHHhHHHH---hCHH
Confidence 4666666655 36679988899999999999876555677778888775542 22233444556676654 4799
Q ss_pred cHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHH
Q psy6178 478 TLETILNFLLHC--LQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQD 555 (912)
Q Consensus 478 ~l~~~l~~l~~~--l~~~~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~ 555 (912)
.+.++++.++.. +++|..+-.-+|++..+.......+... ..-+..+.+. -+..++...+. .++++...
T Consensus 104 ~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v----~rdi~smlts-kd~~Dkl~aLn----Fi~alGen 174 (253)
T 2db0_A 104 LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI----VRDFMSMLSS-KNREDKLTALN----FIEAMGEN 174 (253)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHTSC-SSHHHHHHHHH----HHHTCCTT
T ss_pred HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH----HHHHHHHhcC-CChHHHHHHHH----HHHHHhcc
Confidence 999999999975 4567788889999999987765544333 3333333332 23445554443 33444421
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhcc
Q psy6178 556 QISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQ 635 (912)
Q Consensus 556 ~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 635 (912)
. -.+..|.+.+|..++... + ........+.|+.+... .| -+. +++...++.+.+
T Consensus 175 -~----~~yv~PfLprL~aLL~D~----d--eiVRaSaVEtL~~lA~~---------np---klR---kii~~kl~e~~D 228 (253)
T 2db0_A 175 -S----FKYVNPFLPRIINLLHDG----D--EIVRASAVEALVHLATL---------ND---KLR---KVVIKRLEELND 228 (253)
T ss_dssp -T----HHHHGGGHHHHHGGGGCS----S--HHHHHHHHHHHHHHHTS---------CH---HHH---HHHHHHHHHCCC
T ss_pred -C----ccccCcchHHHHHHHcCc----c--hhhhHHHHHHHHHHHHc---------CH---HHH---HHHHHHHHHhcC
Confidence 1 245678888887777643 1 11223456666666442 11 122 555666666665
Q ss_pred chh-HHHHHHHHHHHH
Q psy6178 636 DAR-VMEHSSRCLRYA 650 (912)
Q Consensus 636 ~~~-v~e~~~~~~~~~ 650 (912)
.++ +...+...++++
T Consensus 229 ~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 229 TSSLVNKTVKEGISRL 244 (253)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 444 445555555554
No 67
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=89.89 E-value=2.3 Score=40.66 Aligned_cols=104 Identities=16% Similarity=0.277 Sum_probs=67.8
Q ss_pred HHhHhHHHHHhhhHhcCcHHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHH
Q psy6178 379 FRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVR 458 (912)
Q Consensus 379 ~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~ 458 (912)
.|......+.. +|....+..+...+. +.++....+++.+++.+++ ...++.++..+ .++++.||
T Consensus 61 vr~~a~~~L~~----~~~~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l----~d~~~~vr 124 (201)
T 3ltj_A 61 VRRAAADALGQ----IGDERAVEPLIKALK--DEDGWVRQSAAVALGQIGD------ERAVEPLIKAL----KDEDWFVR 124 (201)
T ss_dssp HHHHHHHHHHH----HCCGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC------GGGHHHHHHHT----TCSSHHHH
T ss_pred HHHHHHHHHHh----hCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc------HHHHHHHHHHH----cCCCHHHH
Confidence 45444444432 244445666666664 4566677888888887654 23566666654 34589999
Q ss_pred HHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHH
Q psy6178 459 YTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSIS 507 (912)
Q Consensus 459 ~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~ 507 (912)
..+++.+|.+. .++.+ +.+...+.+++ |+..|+.+|.++.
T Consensus 125 ~~a~~aL~~~~-----~~~~~----~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 125 IAAAFALGEIG-----DERAV----EPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHHHHHHT-----CGGGH----HHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-----CHHHH----HHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999874 34444 44455566654 9999999999883
No 68
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=88.23 E-value=29 Score=38.54 Aligned_cols=149 Identities=10% Similarity=0.079 Sum_probs=89.1
Q ss_pred HHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcH-HHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCc
Q psy6178 400 FRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVV-PKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHT 478 (912)
Q Consensus 400 l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l-~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~ 478 (912)
++.+...+... .+....+++..++..++.. +......+ ...++.+..+-.+.++.++..++++++.++.... +.+.
T Consensus 187 i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~ 263 (529)
T 1jdh_A 187 PQALVNIMRTY-TYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT-KQEG 263 (529)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT-TCSC
T ss_pred HHHHHHHHHhC-ChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh-hhHH
Confidence 44444445433 3445567888888888753 11111111 1233444444444578899999999998886532 2345
Q ss_pred HHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHH---hhhhhhh--cHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhc
Q psy6178 479 LETILNFLLHCLQQP--GLASVTANALQSISTA---CCTHMVG--HFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSD 551 (912)
Q Consensus 479 l~~~l~~l~~~l~~~--~v~~~A~~al~~l~~~---~~~~L~~--~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~ 551 (912)
...+++.++..+.++ +++..|+.+|.+++.. .+..+.. -++.+++.+..- ....+.+...+.+++.+...
T Consensus 264 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~---~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---GDREDITEPAICALRHLTSR 340 (529)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHTSS
T ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc---CCHHHHHHHHHHHHHHHHcC
Confidence 567788888877754 4999999999999863 3333332 244455444321 12245678888888888665
Q ss_pred CCH
Q psy6178 552 MPQ 554 (912)
Q Consensus 552 ~p~ 554 (912)
.|.
T Consensus 341 ~~~ 343 (529)
T 1jdh_A 341 HQE 343 (529)
T ss_dssp STT
T ss_pred Cch
Confidence 443
No 69
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=87.44 E-value=51 Score=38.73 Aligned_cols=142 Identities=15% Similarity=0.112 Sum_probs=82.0
Q ss_pred HHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhc
Q psy6178 400 FRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK 474 (912)
Q Consensus 400 l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~ 474 (912)
+..+...|. .+.+-.....++.+|+.++..-... +...++.++.++.. .++.|+..++++|+..+.--..
T Consensus 582 IppLv~LL~-~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s----~~~~Vq~~A~~~L~NLa~~~~~ 656 (810)
T 3now_A 582 IRPLLNLLQ-QDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME----DHLYLTRAAAQCLCNLVMSEDV 656 (810)
T ss_dssp HHHHHHTTS-TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS----CCTTHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHhC-CCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCChHH
Confidence 444554443 2222222345688999888763111 13456777776643 3678999999999876531000
Q ss_pred CcCcH--HHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhh---hhhhh---cHHHHHHHHHHhhhcCCChHHHHHHHHH
Q psy6178 475 HPHTL--ETILNFLLHCLQQP--GLASVTANALQSISTACC---THMVG---HFNGLLQIIQCLDTLSISNDAAIGLLKG 544 (912)
Q Consensus 475 ~p~~l--~~~l~~l~~~l~~~--~v~~~A~~al~~l~~~~~---~~L~~---~~~~ll~~~~~l~~~~~~~~~~~~l~ea 544 (912)
...+. ...++.++.-+..+ +++..|+.||..++.... ..+.. .++.|++.+ .. -+.+.+.....+
T Consensus 657 ~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL----~s-~d~~vq~~A~~a 731 (810)
T 3now_A 657 IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI----AN-PSPAVQHRGIVI 731 (810)
T ss_dssp HHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHH----TC-SSHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHH----CC-CCHHHHHHHHHH
Confidence 00111 12455565555554 499999999999997422 22332 334444333 22 355678888889
Q ss_pred HHHHHhc
Q psy6178 545 VAIIVSD 551 (912)
Q Consensus 545 i~~vi~~ 551 (912)
++.++..
T Consensus 732 L~NL~~~ 738 (810)
T 3now_A 732 ILNMINA 738 (810)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9888774
No 70
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=86.98 E-value=54 Score=38.53 Aligned_cols=133 Identities=9% Similarity=0.036 Sum_probs=80.7
Q ss_pred HhccCCChhhHHHHHHHHHHhhcChhH--------HHHHHHHhccCCCcchHHHHHHHHHHHHHhhc---cc--CCCCcc
Q psy6178 16 TLYLNPNKTEKEKASQWLHQLQKSIYA--------WKIADEMLLHQNELGLEAVYFSAQTMRQKVQN---AF--FELPSE 82 (912)
Q Consensus 16 ~l~~~~~~~~~~~A~~~L~~~q~s~~a--------w~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~---~w--~~l~~~ 82 (912)
.+.++++...+.+|-..|......++. .+....++.+ .+ +.+|.+|+..|.+--.. +- ..+...
T Consensus 297 ~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s-~~--~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g 373 (810)
T 3now_A 297 AMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHS-KN--DGIRVRALVGLCKLGSYGGQDAAIRPFGDG 373 (810)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTC-SC--HHHHHHHHHHHHHHHTTTTTTTSCCSSTTT
T ss_pred HHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcC-CC--HHHHHHHHHHHHHhccccccCccccchhhc
Confidence 444456777788888877776665433 2444566664 33 78999999998754211 11 112212
Q ss_pred cHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhcc---Cc---chHHHHHHHHhccc--chHHHHHHHHhhhhh
Q psy6178 83 SHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMS---AW---EKPVVYIIEKLSHK--GSILALLEVLTVLPE 153 (912)
Q Consensus 83 ~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~~la~l~~~~~---~W---~~~~~~l~~~~~~~--~~~~~~L~iL~~l~e 153 (912)
....+-..+..+|.+.. ..+ -++..-+.+|+.+..... .| .++++.++..++++ ......+.+|..|..
T Consensus 374 ~i~~Lv~~l~~lL~~~~-~d~-~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~ 450 (810)
T 3now_A 374 AALKLAEACRRFLIKPG-KDK-DIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCN 450 (810)
T ss_dssp HHHHHHHHHHHHHHCSS-CCS-SHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhcCCC-CCH-HHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcC
Confidence 22334444555554310 133 688888889999887644 23 46889999988765 345556777777765
No 71
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=86.53 E-value=44 Score=37.02 Aligned_cols=114 Identities=16% Similarity=0.189 Sum_probs=70.5
Q ss_pred HhccCCChhhHHHHHHHHHHhhcC----------hhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHH
Q psy6178 16 TLYLNPNKTEKEKASQWLHQLQKS----------IYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHV 85 (912)
Q Consensus 16 ~l~~~~~~~~~~~A~~~L~~~q~s----------~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~ 85 (912)
.+....|+..|..|-..|.++-.. +++......+|...++ +.++..|+..|++-... ++.+.
T Consensus 24 ~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~--~~~~~~a~~~L~~ls~~------~~~~~ 95 (529)
T 1jdh_A 24 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND--VETARCTAGTLHNLSHH------REGLL 95 (529)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHTTS------HHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCC--HHHHHHHHHHHHHHHcC------chhHH
Confidence 344456889999999999877653 3455566677766545 88999999999974322 22232
Q ss_pred HH-HHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhccC------cchHHHHHHHHhccc
Q psy6178 86 SL-RDSLIEHLCRTND-TSGKNIITQLALALADLALQMSA------WEKPVVYIIEKLSHK 138 (912)
Q Consensus 86 ~l-k~~Ll~~l~~~~~-~~~~~v~~kl~~~la~l~~~~~~------W~~~~~~l~~~~~~~ 138 (912)
.+ +...+..+...-. +.+ .++...+.+|..+...... =.+.++.++..+.++
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~ 155 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 155 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC
T ss_pred HHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC
Confidence 22 2223344433222 333 6777778888887765321 145677777777654
No 72
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=85.59 E-value=1.1 Score=44.78 Aligned_cols=213 Identities=14% Similarity=0.120 Sum_probs=105.9
Q ss_pred ccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcH--HHHHHHH
Q psy6178 414 WEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTL--ETILNFL 486 (912)
Q Consensus 414 w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l--~~~l~~l 486 (912)
......++.++..+...-.+. +...++.+++.+. +.++.++..++++|+.++..-..+.+.+ ...++.+
T Consensus 26 ~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 101 (252)
T 4db8_A 26 MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS----SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 101 (252)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Confidence 334456666664433321110 1234455555442 2358899999999988764211111111 1256666
Q ss_pred HHhcCCC--ChHHHHHHHHHHHHHHhhhhhhhc-HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy6178 487 LHCLQQP--GLASVTANALQSISTACCTHMVGH-FNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQ 563 (912)
Q Consensus 487 ~~~l~~~--~v~~~A~~al~~l~~~~~~~L~~~-~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ 563 (912)
+..+.++ +++..|+.+|.+++.......... -...+..+..+... -+.+.+...+.+++.+...-+ +.......
T Consensus 102 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~- 178 (252)
T 4db8_A 102 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGN-EQIQAVID- 178 (252)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCH-HHHHHHHH-
T ss_pred HHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCCh-HHHHHHHH-
Confidence 6666654 499999999999986543221111 11233333333332 245567888888888876532 22211111
Q ss_pred HHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHH-hHhHHHHHHHHhhccchhHHHH
Q psy6178 564 LCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVIT-ELWPVLSKTCETYQQDARVMEH 642 (912)
Q Consensus 564 l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~v~e~ 642 (912)
...+..|..++... +. ......+..|+.+..+-. .....+.+ ..+|.+..++. ..++++++.
T Consensus 179 --~~~i~~L~~ll~~~---~~---~v~~~a~~~L~~l~~~~~-------~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~ 241 (252)
T 4db8_A 179 --AGALPALVQLLSSP---NE---QILQEALWALSNIASGGN-------EQKQAVKEAGALEKLEQLQS--HENEKIQKE 241 (252)
T ss_dssp --TTCHHHHHHGGGCS---SH---HHHHHHHHHHHHHTTSCH-------HHHHHHHHTTHHHHHHTTTT--CSSSHHHHT
T ss_pred --CCCHHHHHHHHCCC---CH---HHHHHHHHHHHHHhcCCH-------HHHHHHHHCCcHHHHHHHhC--CCCHHHHHH
Confidence 22333333333321 11 111234556666643211 11111222 24454444443 357888888
Q ss_pred HHHHHHHH
Q psy6178 643 SSRCLRYA 650 (912)
Q Consensus 643 ~~~~~~~~ 650 (912)
++.++..+
T Consensus 242 A~~~L~~l 249 (252)
T 4db8_A 242 AQEALEKL 249 (252)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 88887764
No 73
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=82.95 E-value=0.62 Score=41.22 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=54.1
Q ss_pred HHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHH
Q psy6178 401 RHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLE 480 (912)
Q Consensus 401 ~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~ 480 (912)
..+...+. +.+|..+..++.+++.+++ ...++.++..+. ++++.||..+++.+|++. . +
T Consensus 45 ~~L~~~L~--d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L~----d~~~~VR~~A~~aL~~~~-----~----~ 103 (131)
T 1te4_A 45 EPLLESLS--NEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLE----DDSGFVRSGAARSLEQIG-----G----E 103 (131)
T ss_dssp HHHHHGGG--CSCHHHHHHHHHHHGGGCS------HHHHHHHHHHHH----HCCTHHHHHHHHHHHHHC-----S----H
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHc----CCCHHHHHHHHHHHHHhC-----c----H
Confidence 44555554 4667777788888877653 234555555552 357889999999998764 2 2
Q ss_pred HHHHHHHHhcCCC--ChHHHHHHHHHH
Q psy6178 481 TILNFLLHCLQQP--GLASVTANALQS 505 (912)
Q Consensus 481 ~~l~~l~~~l~~~--~v~~~A~~al~~ 505 (912)
..++.+...+.++ .|+..|+.||.+
T Consensus 104 ~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 104 RVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3455555656654 488888887754
No 74
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=81.87 E-value=78 Score=36.21 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=77.6
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHhhcChh---------HHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCC
Q psy6178 10 VYAVVHTLYLNPNKTEKEKASQWLHQLQKSIY---------AWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELP 80 (912)
Q Consensus 10 v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~---------aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~ 80 (912)
+...+..|.++.+++.++.|-..|..+-..++ +......+|.++ + +.++..|+.+|.+-....
T Consensus 58 i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~--~~v~~~A~~aL~nL~~~~----- 129 (644)
T 2z6h_A 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP-V--DSVLFYAITTLHNLLLHQ----- 129 (644)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCS-S--HHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCC-C--HHHHHHHHHHHHHHHhCc-----
Confidence 44445555555588889999988888776554 345556677663 3 899999999999877643
Q ss_pred cccHHHH-HHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhccC------cchHHHHHHHHhccc---chHHHHHHHHh
Q psy6178 81 SESHVSL-RDSLIEHLCRTND-TSGKNIITQLALALADLALQMSA------WEKPVVYIIEKLSHK---GSILALLEVLT 149 (912)
Q Consensus 81 ~~~~~~l-k~~Ll~~l~~~~~-~~~~~v~~kl~~~la~l~~~~~~------W~~~~~~l~~~~~~~---~~~~~~L~iL~ 149 (912)
++.+..+ +...+..+...-. +++ .++...+.+|..++...+. =.+.++.++..+.+. ...+..+.+|.
T Consensus 130 ~~~~~~v~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~ 208 (644)
T 2z6h_A 130 EGAKMAVRLAGGLQKMVALLNKTNV-KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 208 (644)
T ss_dssp TTHHHHHHHTTHHHHHHHGGGCCCH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred chhHHHHHHCCChHHHHHHHCcCCH-HHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2233333 3445555554322 333 4555555566666652211 124566666666544 12334445555
Q ss_pred hhh
Q psy6178 150 VLP 152 (912)
Q Consensus 150 ~l~ 152 (912)
.+.
T Consensus 209 nLs 211 (644)
T 2z6h_A 209 VLS 211 (644)
T ss_dssp HHT
T ss_pred HHh
Confidence 554
No 75
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=78.48 E-value=1.1e+02 Score=35.88 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=49.2
Q ss_pred HHHHHHHhHHHHHHHHHhc-CC---CCC-C-CCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhc
Q psy6178 561 LKQLCLVQVKPLCELIEKQ-IK---PEK-N-KKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQ 634 (912)
Q Consensus 561 l~~l~~p~~~~l~~~~~~~-~~---~~~-~-~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 634 (912)
+..++..+..++...++.. +. .++ . ....+...+..|+.++++-+. .++++.+++..++..++.+ .
T Consensus 598 ~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~-------~lL~y~deL~~il~~~~~~-~ 669 (799)
T 1vsy_4 598 SKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHE-------SLLEYSDELITFMKYLYDN-V 669 (799)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGG-------GGGTTHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcH-------HHHccHHHHHHHHHHHHHH-h
Confidence 4555555666666544322 10 111 0 011234468889998887653 3556778888888777653 2
Q ss_pred cchhHHHHHHHHHHHHHHHh
Q psy6178 635 QDARVMEHSSRCLRYAIRCV 654 (912)
Q Consensus 635 ~~~~v~e~~~~~~~~~~~~l 654 (912)
.+..+...+|.++++++.++
T Consensus 670 k~~~~~~~~~~ll~~lL~sL 689 (799)
T 1vsy_4 670 TNPPLDVITSIVIHSALATL 689 (799)
T ss_dssp CCHHHHHHHTTHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHh
Confidence 34445566777777776644
No 76
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=78.43 E-value=29 Score=35.48 Aligned_cols=86 Identities=12% Similarity=0.200 Sum_probs=58.4
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHhcccCCCcchhhH-HHHHHHhhhcCCCCcccccCccchhhhhhhHHHHHHHhcccCc
Q psy6178 260 LEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIK-ALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKND 338 (912)
Q Consensus 260 ~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~-~l~~ll~~~~~~~~~~~~~~e~vs~~~l~Fw~~l~~~~~~~~~ 338 (912)
.|...++.+++-++.......+..-+ + +.++ +++.++....|+..+ |++..+.-...+.+.+.+ .+
T Consensus 136 PehR~~Ff~LL~ai~~~cF~al~~lp--~---~~fklvidsiiWa~kH~~r~-------V~e~gL~il~~ll~n~~~-~~ 202 (321)
T 1w9c_A 136 PEHRTNFFLLLQAVNSHCFPAFLAIP--P---TQFKLVLDSIIWAFKHTMRN-------VADTGLQILFTLLQNVAQ-EE 202 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHSC--H---HHHHHHHHHHHHHTTCSSHH-------HHHHHHHHHHHHHHHHHH-CH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHcCC--H---HHHHHHHHHHHHHcCCCCch-------HHHHHHHHHHHHHHHHhc-Ch
Confidence 46788899999888887766766654 1 2333 578888888999999 999998887777766543 12
Q ss_pred hhhhhcchHHHHHHHHHHHh
Q psy6178 339 DSLTVLFKPHVERLIGALCK 358 (912)
Q Consensus 339 ~~~~~~~~~~~~~ll~~l~~ 358 (912)
+...+.|+.+|..++..++.
T Consensus 203 ~~~~~Fy~~fy~~il~~if~ 222 (321)
T 1w9c_A 203 AAAQSFYQTYFCDILQHIFS 222 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 23344555666555544443
No 77
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=76.68 E-value=48 Score=30.71 Aligned_cols=175 Identities=14% Similarity=0.176 Sum_probs=105.7
Q ss_pred CcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHhhhh
Q psy6178 437 DVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG---LASVTANALQSISTACCTH 513 (912)
Q Consensus 437 ~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~---v~~~A~~al~~l~~~~~~~ 513 (912)
+++.+++..+ .+.---|++-++.++...+ ...|+...+.+..++.-+.-.+ +...-+++|..++..-...
T Consensus 32 ~~l~~lI~~L----DDDlwtV~kNAl~vi~~i~---~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 32 SVLKKLIELL----DDDLWTVVKNAISIIMVIA---KTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp HHHHHHHHHT----TCSCHHHHHHHHHHHHHHH---TTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHh----ccHHHHHHHhHHHHHHHHH---HHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 4455555543 2334568888888887655 4569999999999988665433 5677889999888776666
Q ss_pred hhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHH
Q psy6178 514 MVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIW 593 (912)
Q Consensus 514 L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~ 593 (912)
+.+..|.+..-|. . -++..+.++-.+++.|..+-| .++..++..+..+++.. + ..+-...
T Consensus 105 v~~vVp~lfanyr----i-gd~kikIn~~yaLeeIaranP---------~l~~~v~rdi~smltsk---d---~~Dkl~a 164 (253)
T 2db0_A 105 VKSMIPVLFANYR----I-GDEKTKINVSYALEEIAKANP---------MLMASIVRDFMSMLSSK---N---REDKLTA 164 (253)
T ss_dssp HHHHHHHHHHHSC----C-CSHHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHHHTSCS---S---HHHHHHH
T ss_pred HHhhHHHHHHHHh----c-CCccceecHHHHHHHHHHhCh---------HHHHHHHHHHHHHhcCC---C---hHHHHHH
Confidence 6666666655442 1 134567888888888887765 23444455555554422 1 1222334
Q ss_pred HHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhcc-chhHHHHHHHHHHHHHH
Q psy6178 594 LDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQ-DARVMEHSSRCLRYAIR 652 (912)
Q Consensus 594 l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~v~e~~~~~~~~~~~ 652 (912)
|+-+++++. .+ ++.+.|.+-++.....+ |..|+..+...+.+...
T Consensus 165 LnFi~alGe---------n~-----~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~ 210 (253)
T 2db0_A 165 LNFIEAMGE---------NS-----FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLAT 210 (253)
T ss_dssp HHHHHTCCT---------TT-----HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc---------cC-----ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHH
Confidence 555554422 12 24445777777776555 44455556666666544
No 78
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=76.07 E-value=65 Score=31.99 Aligned_cols=179 Identities=12% Similarity=-0.010 Sum_probs=100.5
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHHHHHHHH
Q psy6178 12 AVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSL 91 (912)
Q Consensus 12 ~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~~lk~~L 91 (912)
..+..| ..+|+..|..|-..|.++. ++++......++.++ + +.+|..|+..|... .. +++....+-..|
T Consensus 27 ~L~~~L-~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d~-~--~~vR~~A~~aL~~l-~~-----~~~~~~~l~~~L 95 (280)
T 1oyz_A 27 ELFRLL-DDHNSLKRISSARVLQLRG-GQDAVRLAIEFCSDK-N--YIRRDIGAFILGQI-KI-----CKKCEDNVFNIL 95 (280)
T ss_dssp HHHHHT-TCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCS-S--HHHHHHHHHHHHHS-CC-----CTTTHHHHHHHH
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHccC-CchHHHHHHHHHcCC-C--HHHHHHHHHHHHHh-cc-----ccccchHHHHHH
Confidence 344444 3468899999999999886 688888888999874 4 78999999888642 11 122222222222
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHhhcc-CcchHHHHHHHHhccc--chHHHHHHHHhhhhhh-ccc-----cc-CC
Q psy6178 92 IEHLCRTNDTSGKNIITQLALALADLALQMS-AWEKPVVYIIEKLSHK--GSILALLEVLTVLPEE-VNV-----LK-LG 161 (912)
Q Consensus 92 l~~l~~~~~~~~~~v~~kl~~~la~l~~~~~-~W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~ee-~~~-----~~-~~ 161 (912)
.+.+.. ...+ .||...+.+|+.+....+ ..+..++.++..+.++ .........|..+..+ ... +. -.
T Consensus 96 ~~~~~~--d~~~-~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~ 172 (280)
T 1oyz_A 96 NNMALN--DKSA-CVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPN 172 (280)
T ss_dssp HHHHHH--CSCH-HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSS
T ss_pred HHHHhc--CCCH-HHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCC
Confidence 222222 2333 789988988888875443 2356777777777654 1222333444443321 111 00 11
Q ss_pred hhhHHHHHHHHHhh---hhHHHHHHHHhhhcCCCChHHHHHHHHHHHh
Q psy6178 162 KNRREEFEEELKAA---GPIVIEFLKTCQANCGDNVSLQTKVLKCFTS 206 (912)
Q Consensus 162 ~~~r~~~~~~l~~~---~~~vl~~l~~~l~~~~~~~~~~~~~l~~l~s 206 (912)
..-|...-..+... .+.++..|...+.+. +..++..++.++..
T Consensus 173 ~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 173 GDVRNWAAFAININKYDNSDIRDCFVEMLQDK--NEEVRIEAIIGLSY 218 (280)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence 11232222233222 455666666666553 46677777777764
No 79
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.66 E-value=54 Score=30.87 Aligned_cols=102 Identities=18% Similarity=0.134 Sum_probs=65.7
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHHHHHHHH
Q psy6178 12 AVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSL 91 (912)
Q Consensus 12 ~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~~lk~~L 91 (912)
..+..| ..+|+..|..|-..|.++.. +++......+|.++ + +.+|..|+..|...- +++.. ..|
T Consensus 23 ~L~~~L-~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~~-~--~~vr~~a~~aL~~~~-------~~~~~----~~L 86 (211)
T 3ltm_A 23 MYIKNL-QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKDE-D--AWVRRAAADALGQIG-------DERAV----EPL 86 (211)
T ss_dssp HHHHHT-TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS-C--HHHHHHHHHHHHHHC-------CGGGH----HHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcCC-C--HHHHHHHHHHHHhhC-------CHHHH----HHH
Confidence 333444 35689999999999998865 67888888888864 4 899999999887532 11222 233
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHhhccCcchHHHHHHHHhccc
Q psy6178 92 IEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHK 138 (912)
Q Consensus 92 l~~l~~~~~~~~~~v~~kl~~~la~l~~~~~~W~~~~~~l~~~~~~~ 138 (912)
+..+.. ..+ .+|...+.+|+.+. -++.++.++..+..+
T Consensus 87 ~~~l~~---~~~-~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~ 124 (211)
T 3ltm_A 87 IKALKD---EDG-WVRQSAAVALGQIG-----DERAVEPLIKALKDE 124 (211)
T ss_dssp HHHTTC---SSH-HHHHHHHHHHHHHC-----CGGGHHHHHHHTTCS
T ss_pred HHHHcC---CCH-HHHHHHHHHHHHhC-----cHHHHHHHHHHHhCC
Confidence 333322 333 67777776666553 245666677766544
No 80
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=74.64 E-value=6.4 Score=39.89 Aligned_cols=183 Identities=9% Similarity=0.110 Sum_probs=96.3
Q ss_pred CCCCccchhHHHHHHHHhhcccCCC--CcC---cHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcC-------cC
Q psy6178 410 NNVMWEQTEAALYIMQSVAKNVLPE--END---VVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKH-------PH 477 (912)
Q Consensus 410 ~~~~w~~~Ea~L~~l~~iae~~~~~--~~~---~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~-------p~ 477 (912)
.+.+|..+..++-.+..+.+..+.. .++ .+..+...+...-.|.+..+...++.++..+...+... ..
T Consensus 19 ~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~ 98 (278)
T 4ffb_C 19 TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNIT 98 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHH
Confidence 4678998888887777665543321 111 12222222222234678999999999998877644321 12
Q ss_pred cHHHHHHHHHH-hcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCH
Q psy6178 478 TLETILNFLLH-CLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQ 554 (912)
Q Consensus 478 ~l~~~l~~l~~-~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~ 554 (912)
+...+++.++. +++++. ++..|..++..+++.+.. .+.+++.+...... -.+..+...+..+..++...+.
T Consensus 99 ~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~-Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 99 LISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEK-KLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGC-SCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHhCC
Confidence 45667777775 477765 777788888888765432 12233333332221 2455667777777777654321
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHhhhcCC
Q psy6178 555 DQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSP 606 (912)
Q Consensus 555 ~~~~~~l~~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 606 (912)
... .....+.+++..+..++... +. ......+++++.+.+.++.
T Consensus 173 ~~~--~~k~~l~~i~~~l~k~l~d~---~~---~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 173 TNV--NVQTFLPELLKHVPQLAGHG---DR---NVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp TTC--CHHHHHHHHGGGHHHHHTCS---SH---HHHHHHHHHHHHHHTC---
T ss_pred CcC--CchhHHHHHHHHHHHHHhCC---cH---HHHHHHHHHHHHHHHHhCc
Confidence 110 01122233333333444322 11 1223467888888888875
No 81
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=70.39 E-value=79 Score=30.43 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=83.0
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHhhcCh----------hHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCC
Q psy6178 10 VYAVVHTLYLNPNKTEKEKASQWLHQLQKSI----------YAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFEL 79 (912)
Q Consensus 10 v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~----------~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l 79 (912)
+...+..+. +++++.|..|-..|..+-... ++......+|.++ + +.++..|+..|.+-....
T Consensus 4 i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~--~~v~~~a~~~L~~l~~~~---- 75 (252)
T 4hxt_A 4 VEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-D--SEVQKEAARALANIASGP---- 75 (252)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-C--HHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-C--HHHHHHHHHHHHHHHcCC----
Confidence 444455554 457888999999998886543 3566667778774 3 899999999998766531
Q ss_pred CcccHHH-HHHHHHHHHHHhc-cCCChhHHHHHHHHHHHHHhhccC------cchHHHHHHHHhccc--chHHHHHHHHh
Q psy6178 80 PSESHVS-LRDSLIEHLCRTN-DTSGKNIITQLALALADLALQMSA------WEKPVVYIIEKLSHK--GSILALLEVLT 149 (912)
Q Consensus 80 ~~~~~~~-lk~~Ll~~l~~~~-~~~~~~v~~kl~~~la~l~~~~~~------W~~~~~~l~~~~~~~--~~~~~~L~iL~ 149 (912)
++.+.. ++...+..+...- .++ ..++...+.+|+.+....+. -.+.++.++..+.++ ......+..|.
T Consensus 76 -~~~~~~~~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 76 -DEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153 (252)
T ss_dssp -HHHHHHHHHTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -hHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 222222 2223444444422 233 37888888888888853321 135677788877765 33445555666
Q ss_pred hhhh
Q psy6178 150 VLPE 153 (912)
Q Consensus 150 ~l~e 153 (912)
.+..
T Consensus 154 ~l~~ 157 (252)
T 4hxt_A 154 NIAS 157 (252)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 6554
No 82
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=69.14 E-value=4.5 Score=35.43 Aligned_cols=86 Identities=10% Similarity=0.121 Sum_probs=50.5
Q ss_pred HHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcH
Q psy6178 400 FRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTL 479 (912)
Q Consensus 400 l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l 479 (912)
+..+...+. +.+|.....++.+++.+++ ..++.++..+. ++++.||..+++.+|++.. +
T Consensus 14 ~~~l~~~L~--~~~~~vR~~A~~~L~~~~~-------~~~~~L~~~L~----d~~~~vR~~A~~aL~~~~~-----~--- 72 (131)
T 1te4_A 14 LVPRGSHMA--DENKWVRRDVSTALSRMGD-------EAFEPLLESLS----NEDWRIRGAAAWIIGNFQD-----E--- 72 (131)
T ss_dssp -------CC--SSCCCSSSSCCSSTTSCSS-------TTHHHHHHGGG----CSCHHHHHHHHHHHGGGCS-----H---
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHhCc-------hHHHHHHHHHc----CCCHHHHHHHHHHHHhcCC-----H---
Confidence 334444443 4455556666666654432 12555555442 3579999999999998652 2
Q ss_pred HHHHHHHHHhcCC--CChHHHHHHHHHHHH
Q psy6178 480 ETILNFLLHCLQQ--PGLASVTANALQSIS 507 (912)
Q Consensus 480 ~~~l~~l~~~l~~--~~v~~~A~~al~~l~ 507 (912)
..++.+...+.+ +.|+..|+.+|.++.
T Consensus 73 -~a~~~L~~~L~d~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 73 -RAVEPLIKLLEDDSGFVRSGAARSLEQIG 101 (131)
T ss_dssp -HHHHHHHHHHHHCCTHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 334444444544 459999999999875
No 83
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=68.46 E-value=24 Score=36.91 Aligned_cols=92 Identities=10% Similarity=0.101 Sum_probs=62.6
Q ss_pred hHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--h
Q psy6178 418 EAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--L 495 (912)
Q Consensus 418 Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v 495 (912)
--..+.+..+++. .++.+ -+.+.+.+-.++++|.+|..+++++++.. .|+.++.+.+++-+++.|++ |
T Consensus 86 rLvYLyl~~~~~~----~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~-----~~~m~~~l~~~lk~~L~d~~pyV 155 (355)
T 3tjz_B 86 RMCYLTIKEMSCI----AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQIT-----DSTMLQAIERYMKQAIVDKVPSV 155 (355)
T ss_dssp HHHHHHHHHHTTT----SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHC-----CTTTHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHhCCC----HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHcCCCCHHH
Confidence 3444445555554 12233 33333333223457999999999999864 58999999999999999865 9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcHH
Q psy6178 496 ASVTANALQSISTACCTHMVGHFN 519 (912)
Q Consensus 496 ~~~A~~al~~l~~~~~~~L~~~~~ 519 (912)
+..|+-+..+++....+.+..+++
T Consensus 156 Rk~A~l~~~kL~~~~pe~v~~~~~ 179 (355)
T 3tjz_B 156 SSSALVSSLHLLKCSFDVVKRWVN 179 (355)
T ss_dssp HHHHHHHHHHHTTTCHHHHHTTHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999888776554444433
No 84
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=65.58 E-value=65 Score=38.35 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=48.8
Q ss_pred hHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--h
Q psy6178 418 EAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--L 495 (912)
Q Consensus 418 Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v 495 (912)
.+|..+|+-|+-+ +.+.++++++.+.+. .+|.+|+.+...+|..+ ..+|. +.++..|....+|++ |
T Consensus 596 raAViaLGlI~~g----~~e~v~rlv~~L~~~---~d~~VR~gAalALGli~---aGn~~--~~aid~L~~L~~D~d~~V 663 (963)
T 4ady_A 596 RAAVIALGFVLLR----DYTTVPRIVQLLSKS---HNAHVRCGTAFALGIAC---AGKGL--QSAIDVLDPLTKDPVDFV 663 (963)
T ss_dssp HHHHHHHHHHTSS----SCSSHHHHTTTGGGC---SCHHHHHHHHHHHHHHT---SSSCC--HHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHhhccC----CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhc---cCCCc--HHHHHHHHHHccCCCHHH
Confidence 4555555544332 123455555544432 35677777777776544 12232 445554444455544 6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcHHHHHHHHH
Q psy6178 496 ASVTANALQSISTACCTHMVGHFNGLLQIIQ 526 (912)
Q Consensus 496 ~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~ 526 (912)
+..|..|+..+-........|.+..++..+.
T Consensus 664 rq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~ 694 (963)
T 4ady_A 664 RQAAMIALSMILIQQTEKLNPQVADINKNFL 694 (963)
T ss_dssp HHHHHHHHHHHSTTCCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 6667777766654433333344444444433
No 85
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=65.47 E-value=67 Score=33.59 Aligned_cols=151 Identities=12% Similarity=0.137 Sum_probs=84.5
Q ss_pred HHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC------CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 400 FRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE------ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 400 l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~------~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
++.+...|.. +.+....|.++.++..++...+.+ ....++.++..+..-.......++..++++|...+.++.
T Consensus 172 Ip~Lv~lL~~-~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a 250 (354)
T 3nmw_A 172 VKALMECALE-VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 250 (354)
T ss_dssp HHHHHHHHHH-CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhcc
Confidence 3444444332 234456788888888888743221 234456666655322111112577778888877776544
Q ss_pred cCcCcHH-----HHHHHHHHhcCCCC--hHHHHHHHHHHHHHH---hhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHH
Q psy6178 474 KHPHTLE-----TILNFLLHCLQQPG--LASVTANALQSISTA---CCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLK 543 (912)
Q Consensus 474 ~~p~~l~-----~~l~~l~~~l~~~~--v~~~A~~al~~l~~~---~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~e 543 (912)
.+++.-. ..++.++.-|.++. ++..|+.+|.+++.. .+..+... +.+..+..+... -+.+.+.....
T Consensus 251 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--G~i~~Lv~LL~s-~~~~i~~~A~~ 327 (354)
T 3nmw_A 251 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM--GAVSMLKNLIHS-KHKMIAMGSAA 327 (354)
T ss_dssp TCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHT--THHHHHHTTTTC-SSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHC--CCHHHHHHHHhC-CCHHHHHHHHH
Confidence 4443222 24566666666644 889999999999842 33333322 122223333322 24456778888
Q ss_pred HHHHHHhcCCH
Q psy6178 544 GVAIIVSDMPQ 554 (912)
Q Consensus 544 ai~~vi~~~p~ 554 (912)
++..+...-|.
T Consensus 328 aL~nL~~~~~~ 338 (354)
T 3nmw_A 328 ALRNLMANRPA 338 (354)
T ss_dssp HHHHHHTTCCG
T ss_pred HHHHHHcCCHH
Confidence 88888877553
No 86
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=64.73 E-value=78 Score=34.41 Aligned_cols=150 Identities=11% Similarity=0.129 Sum_probs=85.8
Q ss_pred HHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC------CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 400 FRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE------ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 400 l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~------~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
++.+...|. .+.+....|.++.++..++.....+ ....++.++.++..-.......++..++++|...+.++.
T Consensus 288 I~~LV~lLl-~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a 366 (458)
T 3nmz_A 288 VKALMECAL-EVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 366 (458)
T ss_dssp HHHHHHHHT-TCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence 444555443 2334566788888888888743221 234456666665322111122577888888888776655
Q ss_pred cCcCcHH-----HHHHHHHHhcCCC--ChHHHHHHHHHHHHH---HhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHH
Q psy6178 474 KHPHTLE-----TILNFLLHCLQQP--GLASVTANALQSIST---ACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLK 543 (912)
Q Consensus 474 ~~p~~l~-----~~l~~l~~~l~~~--~v~~~A~~al~~l~~---~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~e 543 (912)
.+++.-. ..++.++.-|.++ +++..|+.+|.+++. +.+..+... +.+..+..+... -+.+.+.....
T Consensus 367 ~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--G~I~~Lv~LL~s-~~~~v~~~Aa~ 443 (458)
T 3nmz_A 367 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM--GAVSMLKNLIHS-KHKMIAMGSAA 443 (458)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHH--THHHHHHTTTTC-SSHHHHHHHHH
T ss_pred CCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHhC-CCHHHHHHHHH
Confidence 5554322 2456666667664 388999999999983 233333221 223333333322 24445777888
Q ss_pred HHHHHHhcCC
Q psy6178 544 GVAIIVSDMP 553 (912)
Q Consensus 544 ai~~vi~~~p 553 (912)
++..++..-|
T Consensus 444 AL~nL~~~~p 453 (458)
T 3nmz_A 444 ALRNLMANRP 453 (458)
T ss_dssp HHHHHHTCCS
T ss_pred HHHHHHcCCH
Confidence 8888876654
No 87
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=63.10 E-value=21 Score=35.88 Aligned_cols=142 Identities=8% Similarity=0.015 Sum_probs=76.2
Q ss_pred chhhhhhhHHHHHHHhcccCchhhhhcchHHHHHHHHHHHhhcCCCCCCCCCccccchHHHHHhHhHHHHHhhhHhcCc-
Q psy6178 318 VASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGS- 396 (912)
Q Consensus 318 vs~~~l~Fw~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~ee~~~f~~~R~~~~d~l~~~~~~l~~- 396 (912)
+...+++....+.+..... ......+..+...+++.++.|+--.+ + ...|....+++..++...++
T Consensus 71 v~~~al~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~lveK~l~~~--------k---~~~~~~a~~~l~~~~~~~~~~ 137 (278)
T 4ffb_C 71 AQEQAIVALNSLIDAFASS--SLKNAHNITLISTWTPLLVEKGLTSS--------R---ATTKTQSMSCILSLCGLDTSI 137 (278)
T ss_dssp HHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHHHHHHHHTSSCC--------C---HHHHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHHhhhh--hcccchhHHHHHHHHHHHHHHHhcCc--------c---HHHHHHHHHHHHHHHHhcCcH
Confidence 5555666555554432110 00112233455667777887753111 1 12344455555555554433
Q ss_pred HHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCC---cCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 397 STCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEE---NDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 397 ~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~---~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
..+++.+...+ .+.+++.+.+++-.+..+-+...... ...++.++..+..+..+.++.||.++..+++....|+.
T Consensus 138 ~~~~e~l~~~l--~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 138 TQSVELVIPFF--EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHHGGGG--GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHH--hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 33455554444 35667777777777776655543321 22345555555444456689999999999999998886
Q ss_pred c
Q psy6178 474 K 474 (912)
Q Consensus 474 ~ 474 (912)
.
T Consensus 216 ~ 216 (278)
T 4ffb_C 216 N 216 (278)
T ss_dssp -
T ss_pred c
Confidence 4
No 88
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=61.78 E-value=1.1e+02 Score=28.79 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=84.0
Q ss_pred HHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhc----CCCCchHHHHHHHHHHHHHHHHHHhc
Q psy6178 399 CFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILH----LPPSTHIAVRYTSLLLLGELCEWIDK 474 (912)
Q Consensus 399 ~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~----~~~~~~~~v~~t~~~~lg~y~~~l~~ 474 (912)
+...+.+.+..+-.++..+...+....++.++-.-.-+.++.++++.+.. -.-.+. .+|.-+..+++..+.-+..
T Consensus 45 f~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~-~LRd~AA~lL~~I~~~~~~ 123 (196)
T 4atg_A 45 FIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDD-DVRKMSADIVKYIYDTYSR 123 (196)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHHHHHHHHhCc
Confidence 33444444443444677677777777777776443456777777765322 111222 8999999999999987765
Q ss_pred -CcCcHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHh-hhhhhhcHHHHHHHH
Q psy6178 475 -HPHTLETILNFLLHCLQQPG----LASVTANALQSISTAC-CTHMVGHFNGLLQII 525 (912)
Q Consensus 475 -~p~~l~~~l~~l~~~l~~~~----v~~~A~~al~~l~~~~-~~~L~~~~~~ll~~~ 525 (912)
.|..-+.++..+.+.+.||. ..--|...+..+-.+. +..+.|.++.+.+.+
T Consensus 124 ~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~vr~~llP~l~~~~~~~ 180 (196)
T 4atg_A 124 SYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIREHAEEYKRTI 180 (196)
T ss_dssp TSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHHHHHTHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHHHHHHhhhcCHHHHHHHH
Confidence 47888999999999999875 4445666777665544 345668887777654
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=57.82 E-value=82 Score=31.24 Aligned_cols=132 Identities=15% Similarity=0.111 Sum_probs=80.4
Q ss_pred CCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHH-hcCCCCchHHHHHHHHHHHHHHHHHHhcC-cC---c-HHHHHH
Q psy6178 411 NVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAI-LHLPPSTHIAVRYTSLLLLGELCEWIDKH-PH---T-LETILN 484 (912)
Q Consensus 411 ~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l-~~~~~~~~~~v~~t~~~~lg~y~~~l~~~-p~---~-l~~~l~ 484 (912)
+.+|....+++=.|....+..+..-...+.-++.-+ .++. +.++.|...++.++..+..-+... +. + ...+++
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~-d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP 135 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFF-ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVP 135 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 357877776665555433322111112233344432 1333 458889999999998877766553 22 2 468899
Q ss_pred HHHHhcCCCC--hHHHHHHHHHHHHHHhhhh-hhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhc
Q psy6178 485 FLLHCLQQPG--LASVTANALQSISTACCTH-MVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSD 551 (912)
Q Consensus 485 ~l~~~l~~~~--v~~~A~~al~~l~~~~~~~-L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~ 551 (912)
+++..++++. ++..+-..++.++..+... +.++ +++ .+.+. +...|+..++.++.++..
T Consensus 136 ~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~---l~~---g~ksK--N~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 136 YLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPM---LLD---ALKSK--NARQRSECLLVIEYYITN 197 (266)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHH---HHH---GGGCS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHH---HHH---HHccC--CHHHHHHHHHHHHHHHHh
Confidence 9999999976 8888888888888765433 3232 222 22222 455678888888887754
No 90
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=56.29 E-value=19 Score=37.69 Aligned_cols=82 Identities=6% Similarity=0.008 Sum_probs=55.4
Q ss_pred HHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hH
Q psy6178 419 AALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LA 496 (912)
Q Consensus 419 a~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~ 496 (912)
.||..++.|.+ .+.+..+.+.+.+.-.+.+|.||++|+.++. +.+...|+.....++.+-..+.+++ |.
T Consensus 123 lALRtL~~I~~------~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~---kL~~~~pe~v~~~~~~l~~ll~d~n~~V~ 193 (355)
T 3tjz_B 123 PAVRALCQITD------STMLQAIERYMKQAIVDKVPSVSSSALVSSL---HLLKCSFDVVKRWVNEAQEAASSDNIMVQ 193 (355)
T ss_dssp HHHHHHHHHCC------TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHH---HHTTTCHHHHHTTHHHHHHHTTCSSHHHH
T ss_pred HHHHHHhcCCC------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HHhccCHHHHHHHHHHHHHHhcCCCccHH
Confidence 45556655543 3345566665555445679999999987765 4456678888777777777777755 77
Q ss_pred HHHHHHHHHHHHH
Q psy6178 497 SVTANALQSISTA 509 (912)
Q Consensus 497 ~~A~~al~~l~~~ 509 (912)
..|..++..+++.
T Consensus 194 ~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 194 YHALGLLYHVRKN 206 (355)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 7777777777653
No 91
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=55.04 E-value=38 Score=33.01 Aligned_cols=145 Identities=10% Similarity=0.044 Sum_probs=80.9
Q ss_pred HHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 399 CFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 399 ~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
.++.+...|.+ .+-...|.+..+|+.++.+-+++ +...++.++++|.+.+ ++.++..+..++...+..=.
T Consensus 53 ~Ip~LV~lL~s--~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~---~~~~~e~a~~aL~nLS~~~~ 127 (233)
T 3tt9_A 53 GILKLLQLLKV--QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTR---DLETKKQITGLLWNLSSNDK 127 (233)
T ss_dssp HHHHHHHGGGC--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHTSGG
T ss_pred CHHHHHHHHcC--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCC---CHHHHHHHHHHHHHHHcChh
Confidence 35666666653 33445688899999998752221 2345777888775432 45666665544444332111
Q ss_pred cCcCcHHHHHHHHHH-------hcC-----------CCChHHHHHHHHHHHHH---Hhhhhhhhc---HHHHHHHHHH-h
Q psy6178 474 KHPHTLETILNFLLH-------CLQ-----------QPGLASVTANALQSIST---ACCTHMVGH---FNGLLQIIQC-L 528 (912)
Q Consensus 474 ~~p~~l~~~l~~l~~-------~l~-----------~~~v~~~A~~al~~l~~---~~~~~L~~~---~~~ll~~~~~-l 528 (912)
..+......++.|.. |.. ++++...|+.+|++++. +.+..|... ++.++..+.. +
T Consensus 128 ~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~ 207 (233)
T 3tt9_A 128 LKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTI 207 (233)
T ss_dssp GHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred hHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhh
Confidence 112222223333332 221 23588899999999974 566667542 4777776654 3
Q ss_pred hhcCCChHHHHHHHHHHHHH
Q psy6178 529 DTLSISNDAAIGLLKGVAII 548 (912)
Q Consensus 529 ~~~~~~~~~~~~l~eai~~v 548 (912)
...+.+...++..+.++-.+
T Consensus 208 ~~~~~~~k~~En~v~~L~nL 227 (233)
T 3tt9_A 208 ADYQPDDKATENCVCILHNL 227 (233)
T ss_dssp HTTCTTCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHH
Confidence 33334455667776666554
No 92
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=52.66 E-value=2.5e+02 Score=30.26 Aligned_cols=357 Identities=10% Similarity=0.069 Sum_probs=165.9
Q ss_pred HHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcC
Q psy6178 401 RHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKH 475 (912)
Q Consensus 401 ~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~ 475 (912)
+.+...|.++ ++...+.+..+++.++..-+.. ....++.+++.+. ++++.++..+++++...+.. +
T Consensus 5 ~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~----s~~~~~~~~A~~aL~nLa~~---~ 75 (457)
T 1xm9_A 5 PKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR----SPNQNVQQAAAGALRNLVFR---S 75 (457)
T ss_dssp HHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT----SSCHHHHHHHHHHHHHHHSS---C
T ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHHHhcC---C
Confidence 3444455433 3455677788888877532211 1234556666543 34788999999988877641 2
Q ss_pred cCcHH-----HHHHHHHHhcC---CCChHHHHHHHHHHHHHH--hhhhhh-hcHHHHHHHHHHh-h---hcC-------C
Q psy6178 476 PHTLE-----TILNFLLHCLQ---QPGLASVTANALQSISTA--CCTHMV-GHFNGLLQIIQCL-D---TLS-------I 533 (912)
Q Consensus 476 p~~l~-----~~l~~l~~~l~---~~~v~~~A~~al~~l~~~--~~~~L~-~~~~~ll~~~~~l-~---~~~-------~ 533 (912)
++.-. ..++.++.-|. +++++..|+.+|.+++.. ++..+. .-++.+++.+..- . ... .
T Consensus 76 ~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 22111 22444444454 346999999999999964 333333 2233444433100 0 000 1
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHhHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHh----------
Q psy6178 534 SNDAAIGLLKGVAIIVSDMPQDQISEALK--QLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIF---------- 601 (912)
Q Consensus 534 ~~~~~~~l~eai~~vi~~~p~~~~~~~l~--~l~~p~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---------- 601 (912)
+.+.......+++.+... ++....... ..+.+++.-+........ ++.. .....+..+..+.
T Consensus 156 ~~~v~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~-~~~~---~~e~a~~~L~nLs~~~~~~~~~~ 229 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASR-CDDK---SVENCMCVLHNLSYRLDAEVPTR 229 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTC-TTCT---THHHHHHHHHHHTTTHHHHSCCH
T ss_pred cHHHHHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccC-CchH---HHHHHHHHHHhcccchhccCcch
Confidence 122234666677777654 232222221 455555555544332221 1111 1111111111111
Q ss_pred ---------------------hhcC---------CCcC---CCCCChHH-HHHhHhHHHHHHHHhhccchhHHHHHHHHH
Q psy6178 602 ---------------------KHTS---------PRIM---SEPHPCQG-VITELWPVLSKTCETYQQDARVMEHSSRCL 647 (912)
Q Consensus 602 ---------------------~~l~---------~~~~---~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~ 647 (912)
.... .+.. ..++-... .-....+.+..++.. ..++++.|.++..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~~~~e~a~~aL 308 (457)
T 1xm9_A 230 YRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK-SKKDATLEACAGAL 308 (457)
T ss_dssp HHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred hhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh-cCCHHHHHHHHHHH
Confidence 0000 0000 00000000 112334555555554 35688999999998
Q ss_pred HHHHHHhch---hh-------HHhHHHHHHHHHHHHhcCCCcchHHhHHHHHHHhcC-ccchHHHHHHHHHHhHHHHHhh
Q psy6178 648 RYAIRCVGK---DF-------AHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYAT-SHCVSGLLDMVQAFLPPTYAIL 716 (912)
Q Consensus 648 ~~~~~~l~~---~~-------~p~l~~l~~~l~~~~~~~~~~~~L~~~~~lv~~~g~-~~~~~~l~~l~~~l~~~~~~~l 716 (912)
..+...-+. .. ...+|.+++.+ . ++......-+.+++..+.. +.....+. ...+.....+|
T Consensus 309 ~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL----~-~~~~~v~~~A~~aL~nls~~~~~~~~i~---~~~i~~Lv~lL 380 (457)
T 1xm9_A 309 QNLTASKGLMSSGMSQLIGLKEKGLPQIARLL----Q-SGNSDVVRSGASLLSNMSRHPLLHRVMG---NQVFPEVTRLL 380 (457)
T ss_dssp HHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHT----T-CSCHHHHHHHHHHHHHHHTSGGGHHHHH---HHTHHHHHHTT
T ss_pred HHhccCcCcchHHHHHHHHHHcCCchHHHHHH----h-CCCHhHHHHHHHHHHHHhcCHHHHHHHH---HhhhHHHHHhc
Confidence 877542111 01 12334444332 1 2222222223333333322 22332222 12344555666
Q ss_pred cCcCCCC-CCCchHHHHHHHHHHHHHhCCcc---ccCchhhHHHHHHHHHhcccC-CchhHHHHHHHHHHHhhc
Q psy6178 717 QEEDGLK-NHPDTVDDLFRLCTRFLQRAPIA---FLTSSFISSVMQCGILATHLD-HREANSTVMKFFYDLIHN 785 (912)
Q Consensus 717 ~~~~~~~-~~pd~~~~~f~l~~~~l~~~p~~---~l~~~~l~~i~~~~~~~l~~~-~~~~~~~~~~fl~~li~~ 785 (912)
...+... ..++++....+.+..++...+.. +.....++.+.++ +... +....+.|+..+..++..
T Consensus 381 ~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L----~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINL----CRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp TSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHH----HHCTTCHHHHHHHHHHHHTTSSS
T ss_pred cCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHH----HcCCCcHHHHHHHHHHHHHHHcc
Confidence 6431111 12457777777777887766643 2233445555553 2334 566889998888877643
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=52.22 E-value=69 Score=30.99 Aligned_cols=144 Identities=11% Similarity=0.046 Sum_probs=86.6
Q ss_pred HHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCc
Q psy6178 398 TCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHP 476 (912)
Q Consensus 398 ~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p 476 (912)
..+..+...+. +.+-.....+++++.-+-...+.. ....+.+++.-+..+..+.+.++.-.++.+++..-+-..-+|
T Consensus 33 ~~l~~L~~LL~--dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAG--EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 34555555553 344455678888888887775432 224456667766666555688998889999987766555556
Q ss_pred CcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHh
Q psy6178 477 HTLETILNFLLHCLQQPG--LASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVS 550 (912)
Q Consensus 477 ~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~ 550 (912)
+-+..+...+..-+..++ ++..|+..+..+ ......+.+++.+..+... -+...+...+.++-.+.+
T Consensus 111 ~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~S-kd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 111 KTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVS-PDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhC-CChhHHHHHHHHHHHhhc
Confidence 677777777777666554 666777777766 2233334445554444321 233344444555555544
No 94
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=51.27 E-value=3.5e+02 Score=31.61 Aligned_cols=82 Identities=6% Similarity=-0.002 Sum_probs=47.1
Q ss_pred HHHHHHHHhHHHHHhhcCcC-----CCC--CCCchHHHHHHHHHHHHHhCCccccCc-hhhHHHHHHHHHhcccCCchhH
Q psy6178 701 LLDMVQAFLPPTYAILQEED-----GLK--NHPDTVDDLFRLCTRFLQRAPIAFLTS-SFISSVMQCGILATHLDHREAN 772 (912)
Q Consensus 701 l~~l~~~l~~~~~~~l~~~~-----~~~--~~pd~~~~~f~l~~~~l~~~p~~~l~~-~~l~~i~~~~~~~l~~~~~~~~ 772 (912)
+..++..++..+...+++.. +.. ....-+.=|+.++..++++....++.- +.+-.+++.... ........
T Consensus 598 ~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il~~~~~--~~k~~~~~ 675 (799)
T 1vsy_4 598 SKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYD--NVTNPPLD 675 (799)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHHHHHHH--SCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHHHHHHHH--HhcCcchH
Confidence 55566666655554443320 111 122345677899999999988888754 445555554432 33344444
Q ss_pred HHHHHHHHHHhh
Q psy6178 773 STVMKFFYDLIH 784 (912)
Q Consensus 773 ~~~~~fl~~li~ 784 (912)
+.+++++..++.
T Consensus 676 ~~~~~ll~~lL~ 687 (799)
T 1vsy_4 676 VITSIVIHSALA 687 (799)
T ss_dssp HHHTTHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 667777777665
No 95
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=50.52 E-value=69 Score=33.49 Aligned_cols=141 Identities=13% Similarity=0.128 Sum_probs=78.5
Q ss_pred HHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC------CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH-
Q psy6178 400 FRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE------ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWI- 472 (912)
Q Consensus 400 l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~------~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l- 472 (912)
++.+...|.+ .+-...|.+..+|+.++.+-.+. +...++.+++.|.+.+ ++.++..++.++...+..-
T Consensus 129 Ip~LV~LL~s--~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~---~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 129 MRALVAQLKS--ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK---KESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HHHHHHGGGC--SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCC--CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHHHccCh
Confidence 5555555543 23345688899999988751111 1345777888765543 4566766666666555311
Q ss_pred hcCcCcH--HHHHHHHHHhcCCC------ChHHHHHHHHHHHHH---H---hhhhhhh--cHHHHHHHHHHhhhcCCChH
Q psy6178 473 DKHPHTL--ETILNFLLHCLQQP------GLASVTANALQSIST---A---CCTHMVG--HFNGLLQIIQCLDTLSISND 536 (912)
Q Consensus 473 ~~~p~~l--~~~l~~l~~~l~~~------~v~~~A~~al~~l~~---~---~~~~L~~--~~~~ll~~~~~l~~~~~~~~ 536 (912)
...+... ...++.|+.-+..+ ++...|+.+|++++. . .+..+.. -++.+++.+. + -+.+
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~---~--~~~~ 278 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK---S--HSLT 278 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT---C--SCHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc---C--CChH
Confidence 1112221 24556666655542 278899999999986 2 2223322 2444444432 2 2445
Q ss_pred HHHHHHHHHHHHHh
Q psy6178 537 AAIGLLKGVAIIVS 550 (912)
Q Consensus 537 ~~~~l~eai~~vi~ 550 (912)
.+.....+++.+..
T Consensus 279 v~~~A~~aL~nLa~ 292 (354)
T 3nmw_A 279 IVSNACGTLWNLSA 292 (354)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhC
Confidence 67777777777754
No 96
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=49.39 E-value=34 Score=37.75 Aligned_cols=83 Identities=19% Similarity=0.355 Sum_probs=54.2
Q ss_pred cchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC
Q psy6178 415 EQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG 494 (912)
Q Consensus 415 ~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~ 494 (912)
..+|+|-.+++++ -.++++ ...+.+++. ....+.-.+|..++-.|- |- ...-.-++.+++.++.||.+++
T Consensus 243 PVRETaAQtLGaL-~hLp~e-~~IL~qLV~----~l~~~~WEVRHGGLLGLK-YL---~DLL~~Ld~Vv~aVL~GL~D~D 312 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP-NDIIEQLVG----FLDSGDWQVQFSGLIALG-YL---KEFVEDKDGLCRKLVSLLSSPD 312 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS-CCHHHHHTT----GGGCSCHHHHHHHHHHHH-HT---GGGCCCHHHHHHHHHHHTTCSS
T ss_pred ehHHHHHHHHHHH-HhCChh-HHHHHHHHh----hcCCCCeeehhhhHHHHH-HH---HHHHHHHHHHHHHHHhhcCCcc
Confidence 3568888888888 666543 333333332 112234677777776554 22 2111128999999999999875
Q ss_pred --hHHHHHHHHHHHH
Q psy6178 495 --LASVTANALQSIS 507 (912)
Q Consensus 495 --v~~~A~~al~~l~ 507 (912)
|+..||.+|.-++
T Consensus 313 DDVRAVAAetLiPIA 327 (800)
T 3oc3_A 313 EDIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHHhhhhc
Confidence 9999999988777
No 97
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=47.94 E-value=1.1e+02 Score=36.56 Aligned_cols=61 Identities=10% Similarity=0.181 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhc-CCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q psy6178 397 STCFRHMFNSLHE-NNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLG 466 (912)
Q Consensus 397 ~~~l~~l~~~l~~-~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg 466 (912)
+..+..+.+.+.+ .+.+|++ ++..+|+-+.-+ ..+.++.+++.+... .+|.+|+.++.++|
T Consensus 506 ~~ai~~LL~~~~e~~~e~vrR--~aalgLGll~~g----~~e~~~~li~~L~~~---~dp~vRygaa~alg 567 (963)
T 4ady_A 506 PEAIHDMFTYSQETQHGNITR--GLAVGLALINYG----RQELADDLITKMLAS---DESLLRYGGAFTIA 567 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHH--HHHHHHHHHTTT----CGGGGHHHHHHHHHC---SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHH--HHHHHHHhhhCC----ChHHHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 3445555554432 2233432 334444433222 233455555555433 25666666665555
No 98
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=47.84 E-value=1e+02 Score=33.51 Aligned_cols=142 Identities=13% Similarity=0.124 Sum_probs=79.1
Q ss_pred HHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC------CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 400 FRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE------ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 400 l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~------~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
++.+...|.+ .+-...|.+..+|+.++.+-.+. +...++.+++.|... .++.++..++.+++..+..-.
T Consensus 245 Ip~LV~LL~s--~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s---~~~~v~~~A~~aL~nLs~~~~ 319 (458)
T 3nmz_A 245 MRALVAQLKS--ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV---KKESTLKSVLSALWNLSAHCT 319 (458)
T ss_dssp HHHHHHGGGC--SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC---CSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC---CCHHHHHHHHHHHHHHccCCH
Confidence 5555555543 33345688889999888641111 124567777765443 256677777777766664221
Q ss_pred c-CcCcH--HHHHHHHHHhcCCC------ChHHHHHHHHHHHHH---Hh---hhhhh--hcHHHHHHHHHHhhhcCCChH
Q psy6178 474 K-HPHTL--ETILNFLLHCLQQP------GLASVTANALQSIST---AC---CTHMV--GHFNGLLQIIQCLDTLSISND 536 (912)
Q Consensus 474 ~-~p~~l--~~~l~~l~~~l~~~------~v~~~A~~al~~l~~---~~---~~~L~--~~~~~ll~~~~~l~~~~~~~~ 536 (912)
. .+... ...++.|..-+..+ ++...|+.+|++++. .. +..+. .-++.+++.+. + -+.+
T Consensus 320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~---~--~~~~ 394 (458)
T 3nmz_A 320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK---S--HSLT 394 (458)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS---C--SCHH
T ss_pred HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc---C--CChH
Confidence 1 12221 24555555555542 278899999999986 22 22222 22343433321 2 2445
Q ss_pred HHHHHHHHHHHHHhc
Q psy6178 537 AAIGLLKGVAIIVSD 551 (912)
Q Consensus 537 ~~~~l~eai~~vi~~ 551 (912)
.+.....+++.+...
T Consensus 395 v~~~A~~aL~nLa~~ 409 (458)
T 3nmz_A 395 IVSNACGTLWNLSAR 409 (458)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHcC
Confidence 677888888887643
No 99
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=46.62 E-value=48 Score=32.10 Aligned_cols=122 Identities=15% Similarity=0.183 Sum_probs=70.0
Q ss_pred HHHhHhHHHHHhhhHhcCcHHHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHH
Q psy6178 378 DFRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAV 457 (912)
Q Consensus 378 ~~R~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v 457 (912)
+.|.-..+++... . .....+..+.+.+ ..+.+|+..|.+-.+++.+.....+ +..++.+..- .+ ++++.|
T Consensus 86 eVR~~Av~lLg~~-~--~~~~~L~~ir~~v-a~D~~WrVre~lA~a~~~~~~~~~p--e~~l~~~~~W-~~---d~n~~V 155 (240)
T 3l9t_A 86 QVRMYAVFLFGYL-S--KDKEILIFMRDEV-SKDNNWRVQEVLAKAFDEFCKKIEY--KKALPIIDEW-LK---SSNLHT 155 (240)
T ss_dssp HHHHHHHHHHHHT-T--TSHHHHHHHHHTG-GGCSCHHHHHHHHHHHHHHHHHHCT--TTTHHHHHHH-HH---CSSHHH
T ss_pred HHHHHHHHHHHhc-c--CcHHHHHHHHHHh-CCCCCccHHHHHHHHHHHHHHhcCH--HHHHHHHHHH-hc---CCCHHH
Confidence 4555444444433 2 1123444433323 2578999999987777776653332 2234433332 22 357999
Q ss_pred HHHHHHHHHHHHHHHhc--CcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhh
Q psy6178 458 RYTSLLLLGELCEWIDK--HPHTLETILNFLLHCLQQPG--LASVTANALQSISTACCT 512 (912)
Q Consensus 458 ~~t~~~~lg~y~~~l~~--~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~ 512 (912)
|+.+....-- |-.. .......+++.+-.-..+|+ |+.+.+.+|+.+.+.-..
T Consensus 156 RR~Ase~~rp---W~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 156 RRAATEGLRI---WTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp HHHHHHHTCS---GGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHH---HhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 9988865432 2221 11334456666666666777 999999999998776443
No 100
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=44.02 E-value=1.6e+02 Score=31.75 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=75.4
Q ss_pred cHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcH-----HHHHHHHHHhcCCC--ChHHHHHHHHHHHHH--
Q psy6178 438 VVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTL-----ETILNFLLHCLQQP--GLASVTANALQSIST-- 508 (912)
Q Consensus 438 ~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l-----~~~l~~l~~~l~~~--~v~~~A~~al~~l~~-- 508 (912)
.++.++..|.+ +++.++..+++.++.++. .+++.- ...++.++..|.++ +++..|+.+|++++.
T Consensus 3 ~l~~lv~~L~s----~~~~~q~~A~~~L~~l~~---~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 3 TIPKAVQYLSS----QDEKYQAIGAYYIQHTCF---QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp CHHHHHHHHHS----SCTHHHHHHHHHHHHHTS---SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCC----CCHHHHHHHHHHHHHHHc---CChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 36777777643 256788888888887662 223211 23466666666654 499999999999984
Q ss_pred -Hhhhhhh--hcHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHH
Q psy6178 509 -ACCTHMV--GHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPL 572 (912)
Q Consensus 509 -~~~~~L~--~~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~l 572 (912)
+.+..+. .-++.+++.+.. .-+.+.++....+++.+... +. .........+.+++.-+
T Consensus 76 ~~~k~~i~~~G~i~~Lv~lL~~----~~~~~~~~~a~~aL~nLa~~-~~-~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 76 TTNKLETRRQNGIREAVSLLRR----TGNAEIQKQLTGLLWNLSST-DE-LKEELIADALPVLADRV 136 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTT----CCCHHHHHHHHHHHHHHHTS-SS-THHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHhh----CCCHHHHHHHHHHHHHHhcC-HH-hHHHHHhccHHHHHHHH
Confidence 4555553 346666666531 12456788899999998876 32 22222235555555443
No 101
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=42.99 E-value=3.4e+02 Score=29.08 Aligned_cols=70 Identities=11% Similarity=0.189 Sum_probs=41.5
Q ss_pred HHHHHHHHhh-ccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHHH--hcCCC---cchHHhHHHHHHHhcC
Q psy6178 624 PVLSKTCETY-QQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLY--SKHPH---SSFLYLGSILVDEYAT 694 (912)
Q Consensus 624 ~~l~~~l~~~-~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~~--~~~~~---~~~L~~~~~lv~~~g~ 694 (912)
..+.++++.+ ..|++-++.+..+++++...+. ...+++..-++.+...| +..++ +..|.+.+.++..|.-
T Consensus 162 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~-~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~ 237 (449)
T 2npp_B 162 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFL-GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFAL 237 (449)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCT-TTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCC
Confidence 3455666664 3467777778888888766542 24555555554443333 33333 3567778888877754
No 102
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=42.58 E-value=4e+02 Score=29.68 Aligned_cols=138 Identities=9% Similarity=-0.057 Sum_probs=78.5
Q ss_pred HHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccC------CCCcccHHHHHHHHHHHHHHhcc----CCChhHHHHHHH
Q psy6178 43 WKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFF------ELPSESHVSLRDSLIEHLCRTND----TSGKNIITQLAL 112 (912)
Q Consensus 43 w~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~------~l~~~~~~~lk~~Ll~~l~~~~~----~~~~~v~~kl~~ 112 (912)
|++|..|+..--+..=++|+=||.-||.-++.+-. .++. --.+|-..+=.+-+|.. +...+||...|+
T Consensus 173 fqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~--DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQ 250 (800)
T 3oc3_A 173 LDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS--KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAY 250 (800)
T ss_dssp GGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT--THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH--HHHHHHHHHHHhccccccccCeeeeehHHHHHH
Confidence 45666665553332358999999999998887631 2222 11233333333334432 223479999999
Q ss_pred HHHHHHhhcc-CcchHHHHHHHHhccc--chHHHHHHHHhhhhhhcccccCChhhHHHHHHHHHhhhhHHHHHHHHhhhc
Q psy6178 113 ALADLALQMS-AWEKPVVYIIEKLSHK--GSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQAN 189 (912)
Q Consensus 113 ~la~l~~~~~-~W~~~~~~l~~~~~~~--~~~~~~L~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~l~~ 189 (912)
+|+.+ .+++ + -..+..++..+... ......|--|+.+ .|+-. ..+.|+..+...+.+
T Consensus 251 tLGaL-~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DLL~-----------------~Ld~Vv~aVL~GL~D 310 (800)
T 3oc3_A 251 LLSRI-YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KEFVE-----------------DKDGLCRKLVSLLSS 310 (800)
T ss_dssp HHHHH-TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GGGCC-----------------CHHHHHHHHHHHTTC
T ss_pred HHHHH-HhCChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HHHHH-----------------HHHHHHHHHHhhcCC
Confidence 99999 8776 4 44555555433333 3444556666666 22211 145666666677776
Q ss_pred CCCChHHHHHHHHHH
Q psy6178 190 CGDNVSLQTKVLKCF 204 (912)
Q Consensus 190 ~~~~~~~~~~~l~~l 204 (912)
. +.+++..+..++
T Consensus 311 ~--DDDVRAVAAetL 323 (800)
T 3oc3_A 311 P--DEDIKLLSAELL 323 (800)
T ss_dssp S--SHHHHHHHHHHH
T ss_pred c--ccHHHHHHHHHh
Confidence 4 456666544443
No 103
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=40.25 E-value=1e+02 Score=35.81 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=82.5
Q ss_pred HHHHHHHHhhcccCCC----CcCcHH--HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcC-----cH----HH--
Q psy6178 419 AALYIMQSVAKNVLPE----ENDVVP--KVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPH-----TL----ET-- 481 (912)
Q Consensus 419 a~L~~l~~iae~~~~~----~~~~l~--~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~-----~l----~~-- 481 (912)
-|+.+|..++..-..+ ....+. ..++.|..+-.+.++.+|+++++++..++. +|+ +. +.
T Consensus 578 eAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~----~~e~i~~k~~~~~~~~~~ 653 (778)
T 3opb_A 578 EALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS----HPLTIAAKFFNLENPQSL 653 (778)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT----SGGGTGGGTSCCSSHHHH
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC----CcHHHHHHHHhhcCchhh
Confidence 4577888888753110 011222 133334333333588999999999988774 332 11 11
Q ss_pred -HHHHHHHhcC--CCChHHHHHHHHHHHHHHhh---hhhhh---cHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcC
Q psy6178 482 -ILNFLLHCLQ--QPGLASVTANALQSISTACC---THMVG---HFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDM 552 (912)
Q Consensus 482 -~l~~l~~~l~--~~~v~~~A~~al~~l~~~~~---~~L~~---~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~ 552 (912)
=++.++.-++ +.+++.+|+.||..++.... ..+.. .++.++..+.... -..+.+.+.+-++..++.-.
T Consensus 654 ~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~---~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 654 RNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQI---DDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHhh
Confidence 1555555444 45599999999999975322 22322 3344555544321 24556777888888877644
Q ss_pred CHHHHHHHHHHHH--HHhHHHHHHHHHhc
Q psy6178 553 PQDQISEALKQLC--LVQVKPLCELIEKQ 579 (912)
Q Consensus 553 p~~~~~~~l~~l~--~p~~~~l~~~~~~~ 579 (912)
|.+.-...+..+. .++.+.+.+++...
T Consensus 731 ~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 731 PDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp CSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred ccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 4221111222222 44455555555544
No 104
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=36.45 E-value=2.7e+02 Score=26.00 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=70.7
Q ss_pred hhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCC--CCchHHHHHHHHHHHHHHHHHHhcCc-----CcHHHHHHHHHHh
Q psy6178 417 TEAALYIMQSVAKNVLPEENDVVPKVVEAILHLP--PSTHIAVRYTSLLLLGELCEWIDKHP-----HTLETILNFLLHC 489 (912)
Q Consensus 417 ~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~--~~~~~~v~~t~~~~lg~y~~~l~~~p-----~~l~~~l~~l~~~ 489 (912)
.++|+..++ . ++.-.+.+|.++..+..-- .-.+..+.. .+.+..+-+-.|| .|+..+++-++.+
T Consensus 25 r~~aL~sL~---~--D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~----~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 25 KDIAIECLE---K--ESGLQQLVPYFIQHISELILKSFKEAEVLK----TCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp HHHHHHHHH---H--CSSCTTTHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHh---c--CCChhhhHHHHHHHHHHHHHhccCCHHHHH----HHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 566665554 2 2233566777766543210 001223322 3334444444454 2444444444443
Q ss_pred cC----CC-ChHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHH-hhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy6178 490 LQ----QP-GLASVTANALQSISTACCTHMVGHFNGLLQIIQC-LDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQ 563 (912)
Q Consensus 490 l~----~~-~v~~~A~~al~~l~~~~~~~L~~~~~~ll~~~~~-l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ 563 (912)
+- .+ .++..||..+..+|+.+...-..--+.+...+.+ +.+..-+.......+.|++ +++++ .+..
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~----~lG~~----~vr~ 167 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLS----ILSKN----VVNT 167 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH----HHCHH----HHHT
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH----HhHHH----HHHH
Confidence 32 23 4999999999999999887554444667776654 3333234334444444433 34432 3344
Q ss_pred HHHHhHHHHH
Q psy6178 564 LCLVQVKPLC 573 (912)
Q Consensus 564 l~~p~~~~l~ 573 (912)
++-|.+..+.
T Consensus 168 ~llP~l~~~~ 177 (196)
T 4atg_A 168 VIREHAEEYK 177 (196)
T ss_dssp HHHHHHHHHH
T ss_pred hhhcCHHHHH
Confidence 4445544443
No 105
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=34.18 E-value=6.1e+02 Score=29.39 Aligned_cols=145 Identities=13% Similarity=0.129 Sum_probs=80.8
Q ss_pred HHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-----CcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q psy6178 399 CFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-----ENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWID 473 (912)
Q Consensus 399 ~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-----~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~ 473 (912)
.+..+...+.+ .+-...|.+..++..++.. +.. ....++.+++.+...+.. ...++..+..+|.+... .
T Consensus 458 vIp~Lv~Ll~S--~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~-~~~~k~~AA~ALArLli--s 531 (778)
T 3opb_A 458 LISFLKREMHN--LSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDI-GEPIRILGCRALTRMLI--F 531 (778)
T ss_dssp HHHHHHHHGGG--SCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC----CCHHHHHHHHHHHHHHH--T
T ss_pred CHHHHHHHHcC--CCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCc-chHHHHHHHHHHHHHHh--c
Confidence 44555554543 3344578999999999865 221 134466677766443211 12467888888887762 2
Q ss_pred cCcCc------HHHHHHHHHHhcC-CCCh---------------HHHHHHHHHHHHHHh-------hhhhhhcHHHHHHH
Q psy6178 474 KHPHT------LETILNFLLHCLQ-QPGL---------------ASVTANALQSISTAC-------CTHMVGHFNGLLQI 524 (912)
Q Consensus 474 ~~p~~------l~~~l~~l~~~l~-~~~v---------------~~~A~~al~~l~~~~-------~~~L~~~~~~ll~~ 524 (912)
.+|.. ...+++.|+.-|. +|.. .-.|..||.+++..- +..+... ...+..
T Consensus 532 ~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-~ga~~~ 610 (778)
T 3opb_A 532 TNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST-KVYWST 610 (778)
T ss_dssp SCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh-cCHHHH
Confidence 22211 1145555665554 1322 447999999998742 3334432 123333
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHHhc
Q psy6178 525 IQCLDTLSISNDAAIGLLKGVAIIVSD 551 (912)
Q Consensus 525 ~~~l~~~~~~~~~~~~l~eai~~vi~~ 551 (912)
+..+... -....+....++++.++..
T Consensus 611 L~~LL~s-~n~~VrrAA~elI~NL~~~ 636 (778)
T 3opb_A 611 IENLMLD-ENVPLQRSTLELISNMMSH 636 (778)
T ss_dssp HHHGGGC-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhC-CCHHHHHHHHHHHHHHhCC
Confidence 3333322 2445688899999999863
No 106
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=33.71 E-value=5.6e+02 Score=28.87 Aligned_cols=108 Identities=11% Similarity=0.141 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCC-CcCcHHHHHHHHhcCCCCchHHHHHHHHHHH-----------
Q psy6178 398 TCFRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPE-ENDVVPKVVEAILHLPPSTHIAVRYTSLLLL----------- 465 (912)
Q Consensus 398 ~~l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~-~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~l----------- 465 (912)
+.++.+.+++++ ..-..++-+|+..|.+++...+.. ....++.++..|.+-.. +..+.+.+++++
T Consensus 21 etI~~L~~Rl~~-~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~--D~e~v~~~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 21 ETIQKLCDRVAS-STLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRS--DSEIIGYALDTLYNIISNDEEEE 97 (651)
T ss_dssp HHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTT--CHHHHHHHHHHHHHHHCCC----
T ss_pred hHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCCCCccc
Confidence 356666666653 233345566666777666544321 11224444444433221 122222222222
Q ss_pred -------------HHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHhhh
Q psy6178 466 -------------GELCEWIDKHPHTLETILNFLLHCLQQPG--LASVTANALQSISTACCT 512 (912)
Q Consensus 466 -------------g~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~A~~al~~l~~~~~~ 512 (912)
-.+++.|-.+++.++.++.. |...+ ++..+...|..+|.....
T Consensus 98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~l----L~~~df~vR~~alqlL~~L~~~r~~ 155 (651)
T 3grl_A 98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSL----LEEFDFHVRWPGVKLLTSLLKQLGP 155 (651)
T ss_dssp ----------CHHHHHHHHHHHSTHHHHHHHHH----TTCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred ccccccccchHHHHHHHHHHHcCCccHHHHHHH----hcCccHHHHHHHHHHHHHHHhcCcH
Confidence 12334444456666665554 44444 888899999999977554
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=30.45 E-value=3.8e+02 Score=25.88 Aligned_cols=66 Identities=9% Similarity=-0.007 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHhccCCChhhHHHHHHHHHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhh
Q psy6178 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQ 73 (912)
Q Consensus 6 ~~~~v~~al~~l~~~~~~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~ 73 (912)
+.+++......|+..+.-+.|=-|-..|.++...++.|.+....+....+ =-||..++..+...+.
T Consensus 68 ~~~~~~~la~~L~~~~~deVR~~Av~lLg~~~~~~~~L~~ir~~va~D~~--WrVre~lA~a~~~~~~ 133 (240)
T 3l9t_A 68 DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYLSKDKEILIFMRDEVSKDNN--WRVQEVLAKAFDEFCK 133 (240)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTSHHHHHHHHHTGGGCSC--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCcchHHHHHHHHHHHhccCcHHHHHHHHHHhCCCCC--ccHHHHHHHHHHHHHH
Confidence 46667777777776554456666666666664455667777764444344 6788888888887775
No 108
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=30.23 E-value=4e+02 Score=26.08 Aligned_cols=81 Identities=16% Similarity=0.296 Sum_probs=54.1
Q ss_pred HHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHH
Q psy6178 421 LYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASV 498 (912)
Q Consensus 421 L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~ 498 (912)
+-.|..+-|-+-..+...++++++.++.+..+.+..||+....+|+.-+ ..++++++.+++.+..-+.+++ |..+
T Consensus 33 l~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~---~~k~~l~~~~l~~L~~Ll~d~d~~V~K~ 109 (257)
T 3gs3_A 33 CELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVC---KVKVELLPHVINVVSMLLRDNSAQVIKR 109 (257)
T ss_dssp HHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3344445553333445688888887776654567889998888887654 6789999999998888777654 4444
Q ss_pred HHHHHH
Q psy6178 499 TANALQ 504 (912)
Q Consensus 499 A~~al~ 504 (912)
|..+..
T Consensus 110 ~I~~~~ 115 (257)
T 3gs3_A 110 VIQACG 115 (257)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 109
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=29.24 E-value=3.8e+02 Score=25.57 Aligned_cols=81 Identities=9% Similarity=0.112 Sum_probs=50.1
Q ss_pred cCcCcHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhhhhhhcH--HHHHHHHHHhhhcCCChHHHHHHHHHHHHHH
Q psy6178 474 KHPHTLETILNFLLHCLQQ--PGLASVTANALQSISTACCTHMVGHF--NGLLQIIQCLDTLSISNDAAIGLLKGVAIIV 549 (912)
Q Consensus 474 ~~p~~l~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~~~L~~~~--~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi 549 (912)
..++--..++..|-..|.+ |.++..|-..+..+.+.|...+...+ ..|++.+..+.+...+.+.+.++++-+-.-.
T Consensus 38 ~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 38 QGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp TTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3444445566666666665 45888999999999999988554332 3444444444333345566777777666555
Q ss_pred hcCCH
Q psy6178 550 SDMPQ 554 (912)
Q Consensus 550 ~~~p~ 554 (912)
.+.+.
T Consensus 118 ~~f~~ 122 (226)
T 3zyq_A 118 HAFRN 122 (226)
T ss_dssp HHTTT
T ss_pred HHhCC
Confidence 55543
No 110
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=28.98 E-value=6.4e+02 Score=28.09 Aligned_cols=234 Identities=9% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCccchhHHHHHHHHhhcccCCCCcCcHHHHHHHHhcCC------------------CCchHHHHHHH
Q psy6178 400 FRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLP------------------PSTHIAVRYTS 461 (912)
Q Consensus 400 l~~l~~~l~~~~~~w~~~Ea~L~~l~~iae~~~~~~~~~l~~l~~~l~~~~------------------~~~~~~v~~t~ 461 (912)
++.+...|. ...+....|.+..+|..++. .+......+..-++.|.++- ....+.|+..+
T Consensus 135 Ip~LV~LL~-s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nA 212 (584)
T 3l6x_A 135 VPALVRLLR-KARDMDLTEVITGTLWNLSS-HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNT 212 (584)
T ss_dssp HHHHHHHHH-HCCSHHHHHHHHHHHHHHTT-SGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHH
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHHHHHhC-CchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHH
Q ss_pred HHHHHHH-------HHHHhcCcCcHHHHHHHHHHhc----CCCChHHHHHHHHHHHHHHhhhhhhh--------------
Q psy6178 462 LLLLGEL-------CEWIDKHPHTLETILNFLLHCL----QQPGLASVTANALQSISTACCTHMVG-------------- 516 (912)
Q Consensus 462 ~~~lg~y-------~~~l~~~p~~l~~~l~~l~~~l----~~~~v~~~A~~al~~l~~~~~~~L~~-------------- 516 (912)
..+|... ..-+......++.++.++-..+ .+......|+.+|++||..+...+.+
T Consensus 213 a~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~ 292 (584)
T 3l6x_A 213 AGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANN 292 (584)
T ss_dssp HHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----------
T ss_pred HHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccccccc
Q ss_pred ------------cHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHhHHHHHHHHHhcCCC
Q psy6178 517 ------------HFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLC--LVQVKPLCELIEKQIKP 582 (912)
Q Consensus 517 ------------~~~~ll~~~~~l~~~~~~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~--~p~~~~l~~~~~~~~~~ 582 (912)
+-+..+..+..+....-..+.++....++..+... .......+...+ ...+..|..++....
T Consensus 293 ~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag--~~~~~~~~~~~v~~~~glp~Lv~LL~s~~-- 368 (584)
T 3l6x_A 293 TGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAG--RWTYGRYIRSALRQEKALSAIADLLTNEH-- 368 (584)
T ss_dssp ---CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSS--CSHHHHHHHHHHTSHHHHHHHHHGGGCSC--
T ss_pred ccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcC--CccccHHHHHHHHHcCcHHHHHHHHcCCC--
Q ss_pred CCCCCCChHHHHHHHHHHhhhcCCCcCCCCCChHHHHHhHhHHHHHHHHhhcc------chhHHHHHHHHHHHHH
Q psy6178 583 EKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQ------DARVMEHSSRCLRYAI 651 (912)
Q Consensus 583 ~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~~v~e~~~~~~~~~~ 651 (912)
..........|+.+..+-.. -..+-...+|-+.+++..-.. +.+++..+|..++.++
T Consensus 369 ----~~v~~~A~~aL~nLs~~~~~--------~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~ 431 (584)
T 3l6x_A 369 ----ERVVKAASGALRNLAVDARN--------KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVI 431 (584)
T ss_dssp ----HHHHHHHHHHHHHHHTTCSC--------HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhCChhH--------HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHh
No 111
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=27.87 E-value=4.3e+02 Score=25.64 Aligned_cols=145 Identities=10% Similarity=0.082 Sum_probs=78.7
Q ss_pred HHHhhcChhHHHHHHHHhccCCCcchHHHHHHHHHHHHHhhcccCCCCcccHHHHHHHHHHHHHHhccCCChhHHHHHHH
Q psy6178 33 LHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLAL 112 (912)
Q Consensus 33 L~~~q~s~~aw~~~~~lL~~~~~~~~~vr~faa~~L~~ki~~~w~~l~~~~~~~lk~~Ll~~l~~~~~~~~~~v~~kl~~ 112 (912)
.+-.|.+++......+||.. .+ +.++.=|..+|.+-++.. |...+...-+.+++-+.........-|.=+-.-
T Consensus 25 ~ela~~~e~~l~~L~~LL~d-kD--~~vk~raL~~LeellK~~----~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r 97 (265)
T 3b2a_A 25 VSLALEDKRALFLILELAGE-DD--ETTRLRAFVALGEILKRA----DSDLRMMVLERHLDVFINALSQENEKVTIKALR 97 (265)
T ss_dssp HHHHHHCHHHHHHHHHHTTS-SC--HHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHH
T ss_pred HHHHHhchhHHHHHHHHHhc-cc--hHHHHHHHHHHHHHHHhc----cccccHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 34566788899999999976 44 899999999999988852 333333344445554443221212234444445
Q ss_pred HHHHHHhhccCcchHH----HHHHHHhcccc--hHHHHHHHHhhhhhhcccccCChhhHHHHHHHHHhhhhHHHHHHHHh
Q psy6178 113 ALADLALQMSAWEKPV----VYIIEKLSHKG--SILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTC 186 (912)
Q Consensus 113 ~la~l~~~~~~W~~~~----~~l~~~~~~~~--~~~~~L~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~vl~~l~~~ 186 (912)
++-.+.-..|-=++-+ ..+.+.+.+++ ..+.+.+.|..+ ... ...+.|.+++...
T Consensus 98 ~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-------kv~------------~~~~~V~~~l~sL 158 (265)
T 3b2a_A 98 ALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-------QPL------------EDSKLVRTYINEL 158 (265)
T ss_dssp HHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-------CBS------------CCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-------Ccc------------cchHHHHHHHHHH
Confidence 6666666554223333 33333333321 122222333333 111 1346777777777
Q ss_pred hhcCCCChHHHHHHHHHHH
Q psy6178 187 QANCGDNVSLQTKVLKCFT 205 (912)
Q Consensus 187 l~~~~~~~~~~~~~l~~l~ 205 (912)
+.+ .+..++..++..+.
T Consensus 159 l~S--kd~~vK~agl~~L~ 175 (265)
T 3b2a_A 159 VVS--PDLYTKVAGFCLFL 175 (265)
T ss_dssp HTC--SSHHHHHHHHHHHH
T ss_pred HhC--CChhHHHHHHHHHH
Confidence 743 35666666666654
No 112
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=22.18 E-value=4.3e+02 Score=23.71 Aligned_cols=76 Identities=9% Similarity=0.104 Sum_probs=43.7
Q ss_pred HHHhcCcCcHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhhhhhhcH--HHHHHHHHHhhhcCCChHHHHHHHHHH
Q psy6178 470 EWIDKHPHTLETILNFLLHCLQQ--PGLASVTANALQSISTACCTHMVGHF--NGLLQIIQCLDTLSISNDAAIGLLKGV 545 (912)
Q Consensus 470 ~~l~~~p~~l~~~l~~l~~~l~~--~~v~~~A~~al~~l~~~~~~~L~~~~--~~ll~~~~~l~~~~~~~~~~~~l~eai 545 (912)
+.+...+.--.-++..|...|.+ |.++..|-..+..+.+.|...+...+ ..|++.+..+.........+.++++-+
T Consensus 41 D~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li 120 (163)
T 1x5b_A 41 DKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 33333455555566666666665 55888888888888899987655333 334444444333323444455544433
No 113
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=22.04 E-value=6.9e+02 Score=26.08 Aligned_cols=79 Identities=13% Similarity=0.270 Sum_probs=49.1
Q ss_pred HHHHHHhhcccCCCCcCcHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHhcCCCC--hHHH
Q psy6178 421 LYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPG--LASV 498 (912)
Q Consensus 421 L~~l~~iae~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~t~~~~lg~y~~~l~~~p~~l~~~l~~l~~~l~~~~--v~~~ 498 (912)
+-.|..+-|-+-..+.+.+++++..+.++-.+.+..||+....+|+.-+ ..+++++..+++.+..-+.+.+ |..+
T Consensus 43 l~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~---~~~~el~~~~l~~L~~LL~d~d~~V~K~ 119 (386)
T 3o2t_A 43 ITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEAC---KRDIELLLKLIANLNMLLRDENVNVVKK 119 (386)
T ss_dssp HHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3334444443222233455666665555544457889999888887655 4689999999988888777644 4444
Q ss_pred HHHH
Q psy6178 499 TANA 502 (912)
Q Consensus 499 A~~a 502 (912)
+..+
T Consensus 120 ~I~~ 123 (386)
T 3o2t_A 120 AILT 123 (386)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 114
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=20.48 E-value=7.6e+02 Score=25.93 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=42.5
Q ss_pred HHHHHHHhh-ccchhHHHHHHHHHHHHHHHhchhhHHhHHHHHHHHHHH--HhcCCCc---chHHhHHHHHHHhcC
Q psy6178 625 VLSKTCETY-QQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVL--YSKHPHS---SFLYLGSILVDEYAT 694 (912)
Q Consensus 625 ~l~~~l~~~-~~~~~v~e~~~~~~~~~~~~l~~~~~p~l~~l~~~l~~~--~~~~~~~---~~L~~~~~lv~~~g~ 694 (912)
.+.++++.+ ..|++=++.+..+++++...+.. ..+++-.-++.+... |+..++. ..|.+.+.++..|.-
T Consensus 130 Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~-~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~ 204 (403)
T 3fga_B 130 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFAL 204 (403)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCC
Confidence 355666654 34777777788888887655332 345554444444433 3444443 478889999988865
Done!