RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6178
(912 letters)
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A
{Homo sapiens} PDB: 2xwu_B
Length = 963
Score = 432 bits (1112), Expect = e-137
Identities = 215/968 (22%), Positives = 399/968 (41%), Gaps = 94/968 (9%)
Query: 4 QPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYF 63
+++ V +H LY +PN K A +WL Q Q S AW + ++L Q + E YF
Sbjct: 20 DFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLL--QPDKVPEIQYF 77
Query: 64 SAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQM-- 121
A + K+ + ++P++ + SL+ L + R S K ++T+L +ALA LAL M
Sbjct: 78 GASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGS-KIVLTRLCVALASLALSMMP 136
Query: 122 SAWEKPVVYIIEKLSHKGS-------ILALLEVLTVLPEEVNVLKLGKNRREEFEEELKA 174
AW V ++ + S LALLE+LTVLPEE +L + R+ L
Sbjct: 137 DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAV 196
Query: 175 AGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW---------------------SSGSLH 213
V L+ ++ KVLKCF+SW L
Sbjct: 197 ECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELF 256
Query: 214 DAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTEL 273
D++ + + + + + + + +L L+EQ AV + D+E C++ L
Sbjct: 257 DSSVEAIVNAISQPDAQRYVNTLL-KLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVAL 315
Query: 274 AESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEIL 333
E+ ++++ Q + +++++ C G + N +S+T WY L + +
Sbjct: 316 GENHSRALLDQVEHWQS--FLALVNMIMFCTGIPGHYPVNE--TTSSLTLTFWYTLQDDI 371
Query: 334 YVKNDDSLTVL---FKPHVERLIGALCKHCQLEPDLEGLL---EEDHDFYDFRLKVSELV 387
+ V ++P +L+ L Q D E +E F +R+ +S+ +
Sbjct: 372 LSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTL 431
Query: 388 KDVVFIVGSSTCFRHMFNSL------HENNVMWEQTEAALYIMQSVAKNVLPEENDVVPK 441
V ++G+ ++++ L E W+ TEA LY QS+A+ + +DVVP
Sbjct: 432 MYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPG 490
Query: 442 VVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTAN 501
++ I +++ + T + +G L EW+ HP + ++L +LH L P L+ + +
Sbjct: 491 LIGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSVSSVS 549
Query: 502 ALQSISTACCTHMVGHFNGLLQIIQ-CLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEA 560
L+ I C + + ++ + Q L + L++ + ++S + ++I +
Sbjct: 550 TLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609
Query: 561 LKQLCLVQVKPLCELIEKQIKPEKNKK--------SDPVIWLDRLAAIFKHTSPRIMS-- 610
L L ++ L +L E+ P S+ LD H P +
Sbjct: 610 LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLP 669
Query: 611 ---EPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVK 667
P+P V+ +++ ++ K + DA+V+E +++ + DFA ++ L +
Sbjct: 670 VPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCE 729
Query: 668 QIVVLYSKHPHSSFLYLGSILVDEYATSH-CVSGLLDMVQAFLPPTYAILQEEDGLKNHP 726
+ +YS P +S L L LV +A + + T + Q+ G ++HP
Sbjct: 730 MLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQ--GPRDHP 787
Query: 727 DTVDDLFRLCTRFLQRAPIAFLTSS-FISSVMQCGILATHLDHREANSTVMKFFYDLIHN 785
D VD +L + L+R P FL + +V QC +LA FF +L+
Sbjct: 788 DIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPR 847
Query: 786 NRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADV 845
+ +V + G+ L+ +L+A +M AD+
Sbjct: 848 CG-------------------EVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADI 888
Query: 846 LYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYD-VGQAL 904
L+ L + + W+++ + + +PEQ F Q+ R V + +
Sbjct: 889 LFALNKHCFSLLSMWIKEALQPPGFPSA----RLSPEQKDTFSQQILRERVNKRRVKEMV 944
Query: 905 KELSRLYR 912
KE + L R
Sbjct: 945 KEFTLLCR 952
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing,
nuclear transport, mRNA splicing, mRNA transport; 3.35A
{Drosophila melanogaster}
Length = 971
Score = 412 bits (1060), Expect = e-129
Identities = 149/996 (14%), Positives = 350/996 (35%), Gaps = 116/996 (11%)
Query: 1 MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEA 60
ME + + V + Y N + +WL + S AW+ + +++ E
Sbjct: 1 MEP-IDIARLEEAVVSFY-RSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQ--EV 56
Query: 61 VYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQ 120
+F A T+ K+ + E+P E+ L+ ++E + R K ++ +L ++L +
Sbjct: 57 QFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGP-KIVLNRLCISLGAYIVH 115
Query: 121 MSA-WEKPVVYIIEKLSHKGS--------ILALLEVLTVLPEEVNVLKLGKNR---REEF 168
M W + +I ++ + +LEVLT +PEE V+ R R E
Sbjct: 116 MLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEI 175
Query: 169 EEELKAAGPIVIEFLKTC--QANCGDNVSLQTKVLKCFTSW------------------- 207
+ ++ V +LK + + S + +KC +W
Sbjct: 176 AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLL 235
Query: 208 -----------------SSGSLHDAATDCVSALLPIL-----EYNNNFDAVNLNVFTCIL 245
+ ++ A C+ ++ I+ V + +F L
Sbjct: 236 EVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSL 295
Query: 246 SLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLV---LI 302
S + +++ + ++ LF E +++ + SI +V L
Sbjct: 296 SEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILH 355
Query: 303 CVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTV----LFKPHVERLIGALCK 358
C +++ WY L + ++ ++D KP L L +
Sbjct: 356 CTDKPGIYPVEES--CSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVR 413
Query: 359 HCQLEPD---LEGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTC------FRHMFNSLHE 409
+ + + ++ F +R +S+ ++ L
Sbjct: 414 KSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQR 473
Query: 410 NNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPS-THIAVRYTSLLLLGEL 468
+ W + EA +Y QSVA++ EE +P+++ + +P ++ + T+L +G
Sbjct: 474 HPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSY 533
Query: 469 CEWIDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQ-C 527
C W+ ++P + +N L+ L +++ L+ + C + + + LL
Sbjct: 534 CNWLMENPAYIPPAINLLVRGLNSS-MSAQATLGLKELCRDCQLQLKPYADPLLNACHAS 592
Query: 528 LDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKK 587
L+T + N ++ L+ + ++S + ++I + L + + L + + +
Sbjct: 593 LNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQ-ADSKTPAAR 651
Query: 588 SDPVIWLDRLAAIFKHTSPRIMSEP------HPCQGVITELWPVLSKTCETYQQDARVME 641
+ L+ ++ +F + + + P V+ P+ + E + ++ V+E
Sbjct: 652 IRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLE 711
Query: 642 HSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATS-HCVSG 700
+ +++AI + F +L+ L IV + + L + + + C
Sbjct: 712 AACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAPTLEISKTAIVMFFKDEGCKPL 771
Query: 701 LLDMVQAFLPPTYAILQE--EDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSS-FISSVM 757
+ +++ F+ ++ + + E N DT++ F T+ +++ P + ++
Sbjct: 772 MQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLV 831
Query: 758 QCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSK 817
L A ++F + +R H + ++V
Sbjct: 832 FYAQRGMTLPESGAIRNSIQFLTHFVMQSR-------------------NHAHVTEVVLA 872
Query: 818 HGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMN 877
G+ + + + + AD+L + W++ +S T
Sbjct: 873 TGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPTQ---- 928
Query: 878 AATPEQLIEFHSQVTRSESAY-DVGQALKELSRLYR 912
T + + + + + + Q L E++ R
Sbjct: 929 LITDADKTRYTALIIKEKVNKRLLQQHLSEMAMKTR 964
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 248 bits (634), Expect = 4e-69
Identities = 128/1010 (12%), Positives = 329/1010 (32%), Gaps = 155/1010 (15%)
Query: 2 ESQP-SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEA 60
SQ ++ + VV+ LY + ++ A + L L++ AW D +L + +
Sbjct: 21 FSQKLDINLLDNVVNCLY-HGEGAQQRMAQEVLTHLKEHPDAWTRVDTIL--EFSQNMNT 77
Query: 61 VYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSG-----KNIITQLALALA 115
Y+ Q + ++ + LP ++ ++ + +T+ K I +L + L
Sbjct: 78 KYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILV 137
Query: 116 DLALQM--SAWEKPVVYIIEKLSHKGSILAL-LEVLTVLPEEVNVL---KLGKNRREEFE 169
+ Q W + I+ S+ + +L +L EEV ++ + + + +
Sbjct: 138 QILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLK 197
Query: 170 EELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW---------------------- 207
+ + + + + N L L+ +
Sbjct: 198 DSMCNEFSQIFQLCQFV-MENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKF 256
Query: 208 -SSGSLHDAATDCVSAL--LPILEYNNNFDAVNLNVFTCILSL------EEQFHMAVAHE 258
+ + + C++ + + + +Y F+ + + + + +
Sbjct: 257 LNVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDD 316
Query: 259 DLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLV 318
+ N + + E + ++AL +L+ + E +
Sbjct: 317 EQNFIQNLSLFLCTFLKEHGQLL--EKRLNLREALMEALHYMLLVSEVEETE-------I 367
Query: 319 ASITFRLWYRLSEILYVKNDDSLTV-------------LFKPHVERLIGALCKH--CQLE 363
I W L+ LY ++ S + + ++ + ++
Sbjct: 368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMA 427
Query: 364 PDLEGLLEEDHDFYDFRLKVSE--------LVKDVVFIVGSSTC-------FRHMFNSLH 408
E L+ E+ R + + +++ + + + + N ++
Sbjct: 428 KPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVN 487
Query: 409 ENNVMWEQTEAALYIMQSVAKNVLPE-ENDVVPKVVEAILHLPPS-----THIAVRYTSL 462
W+ + + S++ + E E + V++ +L L + +
Sbjct: 488 GTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIM 547
Query: 463 LLLGELCEWIDKHPHTLETILNFLLHCLQQ--PGLASVTANALQSISTACCTHMVGHFNG 520
++G+ ++ H L+T++N L + + G+ + + I+ C H V G
Sbjct: 548 YIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVG 607
Query: 521 LLQ--IIQCLDTLS-----ISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLC 573
+ I + L+ ++ + + V ++ + E L + ++ +
Sbjct: 608 EVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVW 667
Query: 574 ELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETY 633
+ I +Q + DP + +L +I K + HP + ++ + +
Sbjct: 668 DSIIQQATKNVDILKDPE-TVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCL 726
Query: 634 QQ----------DARVMEHSSRCLRYAIRCVGKDF--------------AHLLEPLVKQI 669
+ + + R +R R K + + PL+ +
Sbjct: 727 SENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAV 786
Query: 670 VVLYSKHPH----SSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNH 725
++ Y ++ L +I+V++ H + + + A T ++ + +
Sbjct: 787 LIDYQRNVPAAREPEVLSTMAIIVNKLG-GHITAEIPQIFDAVFECTLNMIN--KDFEEY 843
Query: 726 PDTVDDLFRLCTRFLQRAPIAFLTSSF--ISSVMQCGILATHLDHREANSTVMKFFYDLI 783
P+ + F L AFL V+ I A R T ++ + L+
Sbjct: 844 PEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLL 903
Query: 784 HNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADV- 842
N A E ++ + +H ++V++ ++H ++A +
Sbjct: 904 QN-----------VAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMF 952
Query: 843 ----ADVLYELISVDRQVSNQ-WLQDTISQLPKNTPAGMNAATPEQLIEF 887
+ ++ V+NQ ++QD ++ L K+ + Q+ F
Sbjct: 953 NLVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFPHL---QDAQVKLF 999
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA-
binding, transport, tRNA processing, tRNA-binding, RNA
binding protein; 3.10A {Schizosaccharomyces pombe} PDB:
3icq_T*
Length = 980
Score = 236 bits (602), Expect = 3e-65
Identities = 134/983 (13%), Positives = 282/983 (28%), Gaps = 132/983 (13%)
Query: 12 AVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQK 71
AV L + K++A+ ++ L+ S WKI E+ + + QT+ +K
Sbjct: 11 AVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEK 70
Query: 72 VQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNII---TQLALALADLALQMSAWEKPV 128
V+ E +RDS+ ++ + I Q L L L L S W
Sbjct: 71 VREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFF 130
Query: 129 VYIIEKLSHKGS---ILALLEVLTVLPEEVNVLKLGKNRREEFE-EELKAA-----GPIV 179
+ ++ L+VL + +E+ + K + + +K A +
Sbjct: 131 ASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDI 190
Query: 180 IEFLKTCQANC--GDNVSLQTKVLKCFTSWSS-GSLHDAATDCVSALLPILEYNNNFDAV 236
+ F+ N L+ + W S +++ + LL
Sbjct: 191 VSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQIEELRCA 250
Query: 237 NLNVFTCI----------------LSLEEQFHMAVA-HEDLEKCMNYCKLFTELAESLL- 278
T I L+L F + D + KL L+
Sbjct: 251 ACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVA 310
Query: 279 -----DRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEIL 333
+ E ++ + E ++ F L L
Sbjct: 311 IKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDE-------TSTAVFPFLSDLLVSL 363
Query: 334 Y-VKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEED----HDFYDFRLKVSELVK 388
+ L+ K ++ L+ A+ K + + E + D +F + R K+
Sbjct: 364 RKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQ- 422
Query: 389 DVVFIVGSSTCFRHMFNSLHE---------NNVMWEQTEAALYIMQSVAKNV-----LPE 434
D + + SS +M++++ W+ E ALY + +
Sbjct: 423 DTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFN 482
Query: 435 ENDVVPKVVEAILHLPPST------HIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLH 488
E D P V+ IL L ++ H V+ + +L + D + ++ + +
Sbjct: 483 EVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVG 542
Query: 489 CL----QQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLK- 543
+ + +V + L ++ L +S+S +
Sbjct: 543 PRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVP 602
Query: 544 ---------------------GVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKP 582
GV I ++ ++ + L L +
Sbjct: 603 TLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLI----NALIGKANAALSS 658
Query: 583 EKNKKSDPVIWLDRLAAI--FKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVM 640
+ + + + L AI F P SE + + + + +
Sbjct: 659 DLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIR 718
Query: 641 EHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSG 700
I VG D + L+ ++ + L S L+ Y + +
Sbjct: 719 GAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKD-NMMEI 777
Query: 701 LLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCG 760
M+ L ++ L + +DL + F+ + L + S++
Sbjct: 778 TNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQ-----LLNKGFGSILFTE 832
Query: 761 ILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHG- 819
+ D ++H ++ + +K + + +++ K G
Sbjct: 833 ENQVYFDP---------LINSILHFANLVGEPATQKSS-----IALVSKMVSLWGGKDGI 878
Query: 820 ---QALVSNLLQACVFSL----HTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNT 872
+ +L C VL EL + + + + S L
Sbjct: 879 AGFENFTLSLTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYLVTVY 938
Query: 873 PAGMNAATPEQLIEFHSQVTRSE 895
+N E+ ++ +
Sbjct: 939 FPTVN-FPDVMASEYLQALSNLD 960
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 222 bits (567), Expect = 2e-60
Identities = 116/979 (11%), Positives = 301/979 (30%), Gaps = 144/979 (14%)
Query: 2 ESQP-SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEA 60
S + + VV T Y + ++++A + L + Q + AW+ AD++L Q ++
Sbjct: 9 FSNDLDIALLDQVVSTFY-QGSGVQQKQAQEILTKFQDNPDAWQKADQIL--QFSTNPQS 65
Query: 61 VYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCR-----TNDTSGKNIITQLALALA 115
+ + + + + + LP++ + +R+ ++ + + KN+I + L L
Sbjct: 66 KFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125
Query: 116 DLALQM--SAWEKPVVYIIEKLSHKGS-ILALLEVLTVLPEEVNVL---KLGKNRREEFE 169
+ Q W + + +I S + + VL +L EEV ++ + + +
Sbjct: 126 QILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 185
Query: 170 EELKAAGPIVIEFLKTCQANCGDNVSLQT--KVLKCFTSW-------------------- 207
+ + + + + + L + W
Sbjct: 186 NSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 245
Query: 208 SSGSLHDAATDCVSALLP--------------ILEYNNNFDAVNLNVFTCILSLEEQFHM 253
+S C++ + +L + N + +V L+ +
Sbjct: 246 TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYAN 305
Query: 254 AVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATN 313
A D + T + ES + + A ++ + E
Sbjct: 306 A-NGNDQSFLQDLAMFLTTYLARNRA--LLESDESLRELLLNAHQYLIQLSKIEERE--- 359
Query: 314 LGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEE- 372
+ T W+ L L+ + +++ +L + ++ ++ + +
Sbjct: 360 ----LFKTTLDYWHNLVADLFYEP--LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDE 413
Query: 373 ---------DHDFYDFRLKVSELVKDVVFIVGSST---CFRHMFNSLHENNVMWEQTEAA 420
+ D E++ + + T + + + W
Sbjct: 414 GEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTL 473
Query: 421 LYIMQSVAKNVLPE-ENDVVPKVVEAILHLPPS-----THIAVRYTSLLLLGELCEWIDK 474
+ + S++ + + E V V++ +L L V + ++G+ ++
Sbjct: 474 SWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA 533
Query: 475 HPHTLETILNFLLHCLQQ--PGLASVTANALQSISTACCTHMVGHFNGLLQ--IIQCLDT 530
H + L T++ L + + G+ + + I C H V + I +
Sbjct: 534 HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRD 593
Query: 531 LS-----ISNDAAIGLLKGVAIIVSDMPQDQISEAL-KQLCLVQVKPLCELIEKQIKPEK 584
+ + K II+S+ L L + ++E+
Sbjct: 594 IQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPT 653
Query: 585 NKKSDPVIW-----LDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARV 639
+ + A+ + + +L+ +S +
Sbjct: 654 LLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGL 713
Query: 640 MEHSSRCLRYAIRCVGKDFAHLLE------------------PLVKQIVVLYSKHPHSS- 680
+ + +R +R + K+ L+E PL+ ++ Y + +
Sbjct: 714 IATKTPKVRG-LRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDAR 772
Query: 681 ---FLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCT 737
L + +V++ G++ ++Q+ T ++ ++ +P+ + ++L
Sbjct: 773 DAEVLNCMTTVVEKVG-HMIPQGVILILQSVFECTLDMINKD--FTEYPEHRVEFYKLLK 829
Query: 738 RFLQRAPIAFLT--SSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGK 795
+++ AFL + + A ++R+ ++ DL+ N + +
Sbjct: 830 VINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVP-- 887
Query: 796 KKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTY---MMADVADVLYELISV 852
+ + VS S H A + L L+
Sbjct: 888 --------------FANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYD 933
Query: 853 DRQVSNQWLQDTISQLPKN 871
++ + + + Q N
Sbjct: 934 NKISVPLYQEAEVPQGTSN 952
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family,
nucleus, phosphoprotein, protein transport; HET: GTP;
2.92A {Homo sapiens}
Length = 1204
Score = 145 bits (366), Expect = 1e-35
Identities = 75/692 (10%), Positives = 188/692 (27%), Gaps = 124/692 (17%)
Query: 2 ESQPSLDTVYAVVHTLY-LNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEA 60
+ + + V + N + + +A ++ + ++ L +
Sbjct: 5 QVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLA-EKTQVAIV 63
Query: 61 VYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCR---TNDTSGKNIITQLALALADL 117
+F Q + V+ + + V L++S++E + +I L+ + ++
Sbjct: 64 RHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEM 123
Query: 118 ALQM--SAWEKPVVYIIEKLSHKGSILAL-LEVLTVLPEEV-NVLKLGKNRREEFEEELK 173
+ W ++ + + L + +L L E+V L RR + ++ L
Sbjct: 124 IKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLT 183
Query: 174 AAGPIVIEFLKTCQANCGD-----------------NVSLQTKVLKCFTSW--------- 207
+ FL + N + L +
Sbjct: 184 QNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHI 243
Query: 208 ---------------SSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFH 252
+ L A +C+ + + + + +
Sbjct: 244 TAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAA 303
Query: 253 MAVAHEDLEK-----CMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGHH 307
L + C++ L L + +S + K L+ L H
Sbjct: 304 QTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHP 363
Query: 308 DYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEP--- 364
+ S T W L + D L + ++ + L K
Sbjct: 364 SQF-------LRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDS 416
Query: 365 --------DLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSL--------- 407
D + + + F R + E+++ + T F+ L
Sbjct: 417 PSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP-KTSFQMAGEWLKYQLSTFLD 475
Query: 408 ------------------HENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKV------V 443
+ + Q EA ++SV + N V +
Sbjct: 476 AGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELL 535
Query: 444 EAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTAN-- 501
+ +L+ + L + L ++ P L + + L + + A
Sbjct: 536 QMVLNFDTKDP-LILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRT 594
Query: 502 ------------ALQSISTACCTHMVGHFNGLLQIIQCL--DTLSISNDAAIGLLKGVAI 547
++ + ++ +F+ L ++ L + L ++ L++ + +
Sbjct: 595 RAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVL 654
Query: 548 IVSDMPQDQISEALKQLCLVQVKPLCELIEKQ 579
I + + + + + V + +
Sbjct: 655 ISNQFKNYERQKVFLEELMAPVASIWLSQDMH 686
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 74.8 bits (183), Expect = 8e-14
Identities = 84/680 (12%), Positives = 213/680 (31%), Gaps = 77/680 (11%)
Query: 19 LNPNKTEKEKASQWLHQLQKS---IYAWKIADEMLLHQNELG---LEAVYF-------SA 65
L+P++ + + L +L +A + ++ +L L A+ +
Sbjct: 15 LSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDS 74
Query: 66 QTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWE 125
+Q Q ++ E+ ++ + + L + + N QL A+AD+ L AW
Sbjct: 75 VKTQQFAQRWITQVSPEAKNQIKTNALTAL-VSIEPRIANAAAQLIAAIADIELPHGAWP 133
Query: 126 KPVVYIIEKLSHKGSIL---ALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEF 182
+ + +++ + A L L + E + + + + ++ I+I
Sbjct: 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESAD---------PQSQALVSSSNNILIAI 184
Query: 183 LKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFT 242
++ Q+ +S ++ AA + ++ L ++ N + +
Sbjct: 185 VQGAQST-----------------ETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ 227
Query: 243 CILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLI 302
+ + ED+E ++ + +P+ +AL + I
Sbjct: 228 VVCEATQ-------AEDIEVQAAAFGCLCKIMSKYYTFM--------KPYMEQALYALTI 272
Query: 303 CVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQL 362
+ + T + + + I + +
Sbjct: 273 ATMKSPNDKVASMTVEFWSTICE-EEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLN 331
Query: 363 EPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHEN--NVMWEQTEAA 420
+ ED D+ + L + + + + +N W EAA
Sbjct: 332 LLTRQNEDPEDDDWNVSMSAGACL--QLFAQNCGNHILEPVLEFVEQNITADNWRNREAA 389
Query: 421 LYIMQSVAKNVLPEE-NDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK---HP 476
+ S+ + V + + +IL+L + V+ T+ +G + + + +
Sbjct: 390 VMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ 449
Query: 477 HTLETILNFLLHCLQ-----QPGLASVTANALQSISTACCTHMVGHFNGLLQ-IIQCLDT 530
L ++ L LQ + N ++ ++ A + + + L+ +I +
Sbjct: 450 QHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANR 509
Query: 531 LSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKSDP 590
+ +A + +V ++E + + L + + + D
Sbjct: 510 IDNEFNARASAFSALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVDENQLTLE--DA 566
Query: 591 VIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYA 650
+ + I + I P + V L + + E + A + + +
Sbjct: 567 QSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEK-KDSAFIEDDVFYAISAL 625
Query: 651 IRCVGKDFAHLLEPLVKQIV 670
+GK F LE ++
Sbjct: 626 AASLGKGFEKYLETFSPYLL 645
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.3 bits (179), Expect = 3e-13
Identities = 118/708 (16%), Positives = 233/708 (32%), Gaps = 215/708 (30%)
Query: 223 LLPILE--YNNNFDAVNLNVFT-CILSLEEQFHMAVAHEDLEKCMNYCKLFTEL---AES 276
+L + E + +NFD ++ ILS EE H+ ++ + + + +LF L E
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL---RLFWTLLSKQEE 77
Query: 277 LLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVK 336
++ + V E + F + + + S+ R++ + LY
Sbjct: 78 MVQKFVEEVLRINYKFLMSPI--------KTEQRQP-------SMMTRMYIEQRDRLY-- 120
Query: 337 NDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVF-IVG 395
ND+ V K +V RL + +L + LLE L+ ++ V ++ ++G
Sbjct: 121 NDNQ--VFAKYNVSRLQ----PYLKLR---QALLE---------LRPAKNV--LIDGVLG 160
Query: 396 S-------STCFRHMFNSLHENNVMW------EQTEAALYIMQSVAKNVLPEENDVVPKV 442
S C + + + W E L ++Q + + P
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS--- 217
Query: 443 VEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTL---------ETILNFLLHC--LQ 491
+ ++ H LL + + + L + F L C L
Sbjct: 218 -DHSSNIKLRIHSIQAELRRLLKSK------PYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 492 QPGLASVTANALQSISTACCTH--MVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIV 549
VT + L + +T TH + H L + S+ LLK +
Sbjct: 271 TTRFKQVT-DFLSAATT---THISLDHHSMTLTP----DEVKSL-------LLKYLDCRP 315
Query: 550 SDMPQD----------QISEALK-------QLCLVQVKPLCELIE---KQIKPEKNKKSD 589
D+P++ I+E+++ V L +IE ++P + +K
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM- 374
Query: 590 PVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTC--------------ETYQQ 635
DRL+ +F ++ I + +++ +W + K+ E +
Sbjct: 375 ----FDRLS-VFPPSAH-IPTI------LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 636 DARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATS 695
++ + S L ++ + H + IV Y+ L +D+Y S
Sbjct: 423 ESTISIPS-IYLELKVKLENEYALH------RSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 696 HCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFR---LCTRFLQRAPIAFLTSSF 752
H + + E + LFR L RFL++ +
Sbjct: 476 HIG--------------HHLKNIEHPER------MTLFRMVFLDFRFLEQK----IRHDS 511
Query: 753 ISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMK 812
+ IL T +KF+ I +N + ++ +
Sbjct: 512 TAWNASGSILNTLQQ--------LKFYKPYICDN--------------DPKYERLVNAIL 549
Query: 813 DIVSKHGQALV----SNLLQACVFSLHTYMMADVADVLYELISVDRQV 856
D + K + L+ ++LL+ +L MA+ + E +QV
Sbjct: 550 DFLPKIEENLICSKYTDLLR---IAL----MAEDEAIFEE---AHKQV 587
Score = 61.8 bits (149), Expect = 9e-10
Identities = 77/601 (12%), Positives = 187/601 (31%), Gaps = 134/601 (22%)
Query: 1 MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEA 60
+ S+ ++ + TL + +++ ++ + Y + + + Q + +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEM----VQKFVEEVLRINYKF-LMSPIKTEQRQPSMMT 109
Query: 61 VYFSAQTMRQKVQNAFFELPSESHVS---LRDSLIEHLCRTNDT----------SGKNII 107
+ Q R ++ N ++ ++ +VS L + L SGK
Sbjct: 110 RMYIEQ--RDRLYNDN-QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK--- 163
Query: 108 TQLAL-ALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVL-----PEEVNVLKLG 161
T +AL +Q + + ++ L + S +LE+L L P +
Sbjct: 164 TWVALDVCLSYKVQ-CKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 162 KN---RREEFEEELKAAGPIVIEFLKTCQ-ANC---GDNVSLQTKVLKCF--------TS 206
N R + EL+ LK+ NC NV K F T+
Sbjct: 221 SNIKLRIHSIQAELR-------RLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCKILLTT 272
Query: 207 WSSGSLHDAATDCVSALLPILEYNNNF-DAVNLNVFTCILSLEEQ-----------FHMA 254
+ D + + + + ++ ++ L Q ++
Sbjct: 273 -RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 255 VAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKAL--DLVLICVGHHDYEAT 312
+ E + + + + L I+ S+ +P + + L + +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF------PPSA 385
Query: 313 NLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDLEGLLEE 372
++ ++ S+ +W+ + + D V ++ L K+ +E +
Sbjct: 386 HIPTILLSL---IWFDVIK------SD---------VMVVVNKLHKYSLVEKQPKESTIS 427
Query: 373 DHDFY-DFRLKVSELV---KDVV--FIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQS 426
Y + ++K+ + +V + + + + + +I
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-------HIGHH 480
Query: 427 VAKNVLPEENDVVPKV------VEA-ILHLPPSTHIAVRYTSLLL-LGELCEWIDKHPHT 478
+ PE + V +E I H + + + + L L +I +
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 479 LETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGH-FNGLLQIIQCLDTLSISNDA 537
E ++N +L L + +++ + LL+I + +I +A
Sbjct: 541 YERLVNAILDFLPKIE-----------------ENLICSKYTDLLRIALMAEDEAIFEEA 583
Query: 538 A 538
Sbjct: 584 H 584
Score = 48.3 bits (114), Expect = 1e-05
Identities = 49/360 (13%), Positives = 94/360 (26%), Gaps = 96/360 (26%)
Query: 594 LDRLAAIFKHTS-PRIMSEPHPCQGVITELWPVLSKTCETYQQ----------------- 635
D +I I+ G + W +LSK E Q+
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 636 DARVMEHSSRCLRYA---------IRCVGKDFAHLLEPLVKQIVVLYSKHPHSS-FLY-- 683
+ S Y + K L+P +K L P + +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 684 LG---SILVDEYATSH-------------------CVSGLLDMVQAF---LPPTYAILQE 718
LG + + + S+ +L+M+Q + P +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT--SR 216
Query: 719 EDGLKNHPDTVDDLFRLCTRFLQRA--PIAFL------TSSFISSV-MQCGILATHLDHR 769
D N + + R L+ L + ++ + C IL T +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 770 EAN--STVMKFFYDLIHNNRVLSDKDGKK---KAVSEEDFDMRHRLMKDIVSKHGQALVS 824
+ S L H++ L+ + K K + D+ + L +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-----------EVLTT 325
Query: 825 NLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQL 884
N + + + E I + W +L + +N P +
Sbjct: 326 NPRRLSIIA--------------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Score = 43.7 bits (102), Expect = 3e-04
Identities = 60/408 (14%), Positives = 114/408 (27%), Gaps = 142/408 (34%)
Query: 48 EMLLHQNELGL---EAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGK 104
+ L + + L E + + + Q +LP E + TN
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQ----DLPRE------------VLTTNPR--- 328
Query: 105 NIITQLALALADLALQMSAWEKPVVYIIEKLSH--KGSILAL--------LEVLTVLPEE 154
++ +A ++ D W+ +KL+ + S+ L + L+V P
Sbjct: 329 -RLSIIAESIRDGLATWDNWKH---VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 155 VN----VLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSG 210
+ +L L + + + +V + K SL K K T
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMV-----VVNKLHKY---------SLVEKQPKESTI---- 426
Query: 211 SLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLF 270
S+ + LE + + E+
Sbjct: 427 SIPS------------------------------IYLELKVKL----ENE---------- 442
Query: 271 TELAESLLDRIVNESMTKQQPFSIKALDLVLIC-VGHHDYEATNLGGLVASITFRLWY-- 327
L S++D LD +GHH + FR+ +
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPERMTL--FRMVFLD 499
Query: 328 --------RLSEILYVKNDDSLTVL-----FKPHVERLIGALCKHCQLEPDLEGLLEEDH 374
R + + L L +KP++ C + P E L+
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-------CDND---PKYERLVN--- 546
Query: 375 DFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSL-HENNVMWEQTEAAL 421
DF K+ E + I T + +L E+ ++E+ +
Sbjct: 547 AILDFLPKIEENL-----ICSKYTDLLRI--ALMAEDEAIFEEAHKQV 587
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 69.1 bits (168), Expect = 5e-12
Identities = 100/743 (13%), Positives = 215/743 (28%), Gaps = 85/743 (11%)
Query: 1 MESQPSLDTVYAVVHTL--YLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGL 58
E +P + ++ L +P+ T + Q L QL + +L
Sbjct: 3 YEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDE 62
Query: 59 EAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLA 118
S ++ V+ F P+ ++ + ++ ++ I + + + +A
Sbjct: 63 PTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSS----PLIRATVGILITTIA 118
Query: 119 --LQMSAWEKPVVYIIEKLSHKGSIL--ALLEVLTVLPEEVNVLKLGKNRREEFEEELKA 174
++ W + + L + L + E+ + + L
Sbjct: 119 SKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICED--------SAEILDSDVLDR 170
Query: 175 AGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFD 234
I+I K L+ F SS + A CV+ +
Sbjct: 171 PLNIMI-----------------PKFLQFFKH-SSPKIRSHAVACVNQFIISRT--QALM 210
Query: 235 AVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSI 294
+ + +L E+ E N C+ L E +DR+ P
Sbjct: 211 LHIDSFIENLFALAGD-------EEPEVRKNVCRALVMLLEVRMDRL--------LPHMH 255
Query: 295 KALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIG 354
++ +L D + + F L I L L V +
Sbjct: 256 NIVEYMLQRTQDQDENVA-----LEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 310
Query: 355 ALCKHCQLEPDLEGLLEEDHDFYDFRL-KVSELVKDVVFIVGSSTCFRHMFNSLHEN--N 411
+ L+ D+EG D D+ L K S DV+ V H+ L E +
Sbjct: 311 SDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH 370
Query: 412 VMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEW 471
W E+ + ++ ++A+ + +P+++ ++ VR + L W
Sbjct: 371 HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430
Query: 472 I--DKHPHTLETILNFLLHCLQQ--PGLASVTANALQSISTACCTHMVGHFNGLLQ-IIQ 526
+ L+ ++ LL + + +A ++ CT +V + +L ++
Sbjct: 431 VVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVF 490
Query: 527 CLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNK 586
N L + + + ++ L + ++ K++
Sbjct: 491 AFSKYQHKNLLI--LYDAIGTLADSVGHHLNKPEY-------IQMLMPPLIQKWNMLKDE 541
Query: 587 KSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQ--------DAR 638
D L+ L+++ + P L D
Sbjct: 542 DKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKD 601
Query: 639 VMEHSSRCLRYAIRCVGKDFAHLL-EPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHC 697
M + L +G + L+ + ++ + L+ + C
Sbjct: 602 FMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLT-KAC 660
Query: 698 VSGLLDMVQAFLPPTYAILQEED 720
+ + F+P L E
Sbjct: 661 FQHVKPCIADFMPILGTNLNPEF 683
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 66.4 bits (161), Expect = 3e-11
Identities = 99/753 (13%), Positives = 236/753 (31%), Gaps = 91/753 (12%)
Query: 66 QTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWE 125
++ + Q + + + + +++ ++ L +T + +Q +A + ++ W
Sbjct: 70 PDIKAQYQQRWLAIDANARREVKNYVLHTL--GTETYRPSSASQCVAGIACAEIPVNQWP 127
Query: 126 KPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKT 185
+ + ++ +++ S + E +G ++ E+L+ ++ +
Sbjct: 128 ELIPQLVANVTNPNSTEHMKESTLEA--------IGYICQDIDPEQLQDKSNEILTAI-- 177
Query: 186 CQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCIL 245
+ S ++ AAT+ + L + NFD + F
Sbjct: 178 --------------IQGMRKEEPSNNVKLAATNALLNSLEFTK--ANFDKESERHF---- 217
Query: 246 SLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVG 305
+ + A D + + ++ + + + AL + I
Sbjct: 218 -IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM--------ETYMGPALFAITIEAM 268
Query: 306 HHDYEATNLGGLVASITFRLWYRLSEI-LYVKNDDSLTVLFKPHVERLIGALCKHCQLEP 364
D + L I F E+ L ++ ++ P A L P
Sbjct: 269 KSDIDEVAL----QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324
Query: 365 DLEGLL----EEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHEN--NVMWEQTE 418
L L E D D K + + ++ H+ + E+ N W +
Sbjct: 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRD 384
Query: 419 AALYIMQSVAKNVLPEE-NDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWI---DK 474
AA+ + + P + +V + + ++ L + VR T+ +G +CE +
Sbjct: 385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI 444
Query: 475 HPHTLETILNFLLHCLQQ-PGLASVTANALQSISTACCTHMVGHFNG-----------LL 522
+ L +L L+ L P +AS A S++ A +
Sbjct: 445 NDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFE 504
Query: 523 QIIQCLDTLSISNDAAIGLLKGVAI-----IVSDMPQDQISEALKQLCLVQVKPLCELIE 577
I+Q L + D L+ A IV + +D A+++ LV ++ L ++++
Sbjct: 505 LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD-CYPAVQKTTLVIMERLQQVLQ 563
Query: 578 KQIKPEKNKKSDPVIWL-----DRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCET 632
+ + L L + + + V+ L + T
Sbjct: 564 MESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA--LQISDVVMASLLRMFQSTAG- 620
Query: 633 YQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEY 692
V E + + + +G +F +E + + + LV +
Sbjct: 621 ---SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDL 677
Query: 693 ATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSF 752
+ S ++ + L E+ H + + F +
Sbjct: 678 CRA-LQSNIIPFCDEVMQLLLENLGNEN---VHRSVKPQILSVFGDIALAIGGEFK--KY 731
Query: 753 ISSVMQCGILATHLDHREANSTVMKFFYDLIHN 785
+ V+ A+ +++ ++ + +L +
Sbjct: 732 LEVVLNTLQQASQAQVDKSDYDMVDYLNELRES 764
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 3e-09
Identities = 81/579 (13%), Positives = 156/579 (26%), Gaps = 224/579 (38%)
Query: 443 VEAILHLPPSTHIAV-----RYTSLLLLGELCEWIDKHPHT-LETILNFLLHC--LQQPG 494
+E +L +P ++ ++ +L D P T E + FL + L +P
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 495 LASVTANALQSISTACCTHMVGHF-NGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMP 553
L + F N L+ ND + + + +
Sbjct: 76 KVGQFDQVLNLC--------LTEFENCYLE----------GND--------IHALAAKLL 109
Query: 554 QDQISEALKQLCLVQV-KPLCELIEKQIKPE------KNKKSDPVIWLDRLAAIFKHTSP 606
Q+ + +K L++ + ++ + + +L AIF
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA----QLVAIF----- 160
Query: 607 RIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLV 666
QG + + L +TY ++++ A L L+
Sbjct: 161 -------GGQGNTDDYFEELRDLYQTYH------VLVGDLIKFS--------AETLSELI 199
Query: 667 KQIVVLYSKHPHS----SFL----------YLGSILVDEYATSHCVSGLLDMVQAFLPPT 712
+ + +L YL SI + S + G++ +
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-----SCPLIGVIQLAH------ 248
Query: 713 YAILQEEDGLKNHP--------------------------DTVDD-----------LFRL 735
Y + + G P D+ + LF +
Sbjct: 249 YVVTAKLLGF--TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 736 CTRFLQRAPIAFLTSSFISSVMQCG------ILA-THLDHREANSTVMKFFYDL-----I 783
R + P L S + ++ +L+ ++L + V K L +
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 784 H-------NNRVLSDKDG-------------KKKAVSEED------------FDMR---- 807
N V+S G K KA S D F R
Sbjct: 367 EISLVNGAKNLVVS---GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 808 ----H-RLMKDIVSKHGQALVSNL-------LQACVFSLHTY-------MMADVADVLYE 848
H L+ + LV N +Q V+ T+ + +++ + +
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY--DTFDGSDLRVLSGSISERIVD 481
Query: 849 LISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEF 887
I V +W T AT +++F
Sbjct: 482 CIIRLP-V--KW--------ETTTQFK---AT--HILDF 504
Score = 54.7 bits (131), Expect = 1e-07
Identities = 99/561 (17%), Positives = 172/561 (30%), Gaps = 179/561 (31%)
Query: 3 SQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNE----LGL 58
S SL+ V V + ASQ Q K + E +E L
Sbjct: 12 SHGSLEHVLLVPTASFFI--------ASQLQEQFNKILPE---PTEGFAADDEPTTPAEL 60
Query: 59 EAVY--FSAQTMRQKVQNAFFELPSESHVSLRDSLIE----HLCRTNDTSGKNIITQLAL 112
+ + + + F ++ L L E +L ND I LA
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQV-------LNLCLTEFENCYL-EGND------IHALAA 106
Query: 113 ALADLALQMSAWEKPVV--Y-----IIEKLSHKGSILALLEVLTVLPEEVNVLKL----G 161
L K ++ Y + ++ K S AL V ++ + G
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR--AVGEGNAQLVAIFGGQG 164
Query: 162 KNRREEFEE--EL-KAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFT------SWSSGSL 212
N + FEE +L + +V + +K + + K FT W L
Sbjct: 165 -NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW----L 219
Query: 213 HDAATDCVSALLPILEYNNNFDAV----NLNVFTCILSLEEQF-HMAVAHEDLEKCMNYC 267
+ + P +Y ++ L Q H V + L
Sbjct: 220 ENPSN------TPDKDY---LLSIPISCPLIGVI-------QLAHYVVTAKLLG--FTPG 261
Query: 268 KLFTEL------AESLLD-RIVNESMTKQQPF---SIKALDLVLICVGHHDYEATNLGGL 317
+L + L ++ L+ + E+ + + F KA+ + L +G YEA L
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWES-FFVSVRKAITV-LFFIGVRCYEAYPNTSL 319
Query: 318 VASITFRLWYRLSEILYVKNDDS-----LTV--LFKPHVERLIGALCKHCQLE------- 363
SI L + ++N++ L++ L + V+ + H
Sbjct: 320 PPSI-------LED--SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 364 ------------P-DLEGL---LEEDH--DFYD-FRLKVSELVKDVVFIVGSSTCFRHM- 403
P L GL L + D R+ SE + + F S F +
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE--RKLKF----SNRFLPVA 424
Query: 404 --FNS-------------LHENNVMWEQTEAALYIMQSV-----AKNVLPEENDVVPKVV 443
F+S L +NNV + + + I V ++ + ++V
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKD--IQI--PVYDTFDGSDLRVLSGSISERIV 480
Query: 444 EAILHLP---------PSTHI 455
+ I+ LP +THI
Sbjct: 481 DCIIRLPVKWETTTQFKATHI 501
Score = 53.1 bits (127), Expect = 4e-07
Identities = 52/292 (17%), Positives = 82/292 (28%), Gaps = 117/292 (40%)
Query: 37 QKSIYA---WKIADEMLLHQNELGLE------------AVYFSA---QTMRQKVQNAFFE 78
+ S A W AD ++ G ++F + +R+ FE
Sbjct: 1637 KTSKAAQDVWNRADNHF--KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 79 LPSESHVSLR---DSLIEHLCRT---------NDTSGKNIITQLALALADLALQMSAWEK 126
+ + + EH + T TQ AL L + A
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ----FTQPALTLMEKA-------- 1742
Query: 127 PVVYIIEKLSHKGSI----------L----ALLEVLTVLPEEVNVLKLGKNR-------- 164
E L KG I L AL + V+ E +++++ R
Sbjct: 1743 ----AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE-SLVEVVFYRGMTMQVAV 1797
Query: 165 -REE-------------------FEEELKAAGPIVIEFLKT----CQ-ANCGDNVSLQTK 199
R+E F +E A +V K + N NV Q
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQE--ALQYVVERVGKRTGWLVEIVN--YNVENQQY 1853
Query: 200 VLKCFTSWSSGSLHDAATDCVSALLPILEYNN--NFDAVNLNVFTCILSLEE 249
V +G L + + +L + D + L LSLEE
Sbjct: 1854 VA-------AGDLRA-----LDTVTNVLNFIKLQKIDIIELQK---SLSLEE 1890
Score = 44.3 bits (104), Expect = 2e-04
Identities = 43/273 (15%), Positives = 77/273 (28%), Gaps = 116/273 (42%)
Query: 659 AHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCV-SGLLDMVQAFLP-PTYAIL 716
A+ PL H S + +LV S + S L + LP PT
Sbjct: 3 AYSTRPLTLS---------HGSLEH--VLLVP--TASFFIASQLQEQFNKILPEPTEGFA 49
Query: 717 QEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCG-------ILATHLDHR 769
+++ P T +L +FL ++SS+++ +L L
Sbjct: 50 ADDE-----PTTPAELV---GKFL----------GYVSSLVEPSKVGQFDQVLNLCLTE- 90
Query: 770 EANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQA 829
F E + + DI H AL + LLQ
Sbjct: 91 ---------F---------------------ENCY-LEG---NDI---H--ALAAKLLQE 111
Query: 830 CVFSLHTYMMADVADVL---YELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIE 886
+ + +++ R ++ + K + + + A E +
Sbjct: 112 -----NDTTLVKTKELIKNYITA----RIMAKR-------PFDKKSNSALFRAVGEGNAQ 155
Query: 887 FHSQVTRSESAYDV--GQA-----LKELSRLYR 912
+ GQ +EL LY+
Sbjct: 156 L----------VAIFGGQGNTDDYFEELRDLYQ 178
Score = 43.5 bits (102), Expect = 4e-04
Identities = 48/319 (15%), Positives = 95/319 (29%), Gaps = 117/319 (36%)
Query: 305 GHHDYEATNLGGLVASITFR-LW------------YRLSEILYVKND-DSLTVLFKPHVE 350
G Y+ S + +W + + +I V N+ +LT+ F
Sbjct: 1632 GMDLYKT--------SKAAQDVWNRADNHFKDTYGFSILDI--VINNPVNLTIHFGGEKG 1681
Query: 351 RLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLH-- 408
+ I + ++ E D +LK ++ K++ +S FR L
Sbjct: 1682 KRIRE---------NYSAMIFET--IVDGKLKTEKIFKEINEHS-TSYTFRSEKGLLSAT 1729
Query: 409 EN-------------NVMWEQT--------------E-AALYIMQSVAKNVLPEENDVVP 440
+ + + E AAL S+A +V+ E +V
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALA---SLA-DVMSIE-SLV- 1783
Query: 441 KVV----EAILHLPPSTH--------IAVRYTSLLL------LGELCEWIDKHPHTLETI 482
+VV + P IA+ + L + E + K L I
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 483 LNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLL 542
+N+ + V A G L + L+ + + I ++
Sbjct: 1844 VNYNV-----ENQQYVAA---------------GDLRALDTVTNVLNFIKLQK---IDII 1880
Query: 543 KGVAIIVSDMPQDQISEAL 561
+ + S + +++ L
Sbjct: 1881 E---LQKS-LSLEEVEGHL 1895
Score = 33.1 bits (75), Expect = 0.53
Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 76/187 (40%)
Query: 3 SQ--PSLDTVYAVV----HTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNEL 56
S+ + V H+ L P + ++ L + + + + ++
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVP---ASDLINKDL-----------VKNNVSFNAKDI 455
Query: 57 GLEAVY--FSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALAL 114
+ VY F +R L S+ E + I +L +
Sbjct: 456 QI-PVYDTFDGSDLR----------------VLSGSISERIVDC--------IIRLPV-- 488
Query: 115 ADLALQMSAWEKPVVYIIEKLSHKGSILAL-------LEVLTVLPEE---VNVL---KLG 161
WE + K +H IL L VLT ++ V V+ L
Sbjct: 489 -K-------WETTTQF---KATH---ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLD 534
Query: 162 KNRREEF 168
N +++
Sbjct: 535 INPDDDY 541
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 55.6 bits (133), Expect = 4e-08
Identities = 63/500 (12%), Positives = 158/500 (31%), Gaps = 76/500 (15%)
Query: 19 LNPNKTEKEKASQWLHQLQKSI---YAWKIADEMLLHQNELG---LEAVYF------SAQ 66
++P++ E E A ++L + + +++ + N +
Sbjct: 11 VSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDP 70
Query: 67 TMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEK 126
++ + Q + + + + +++ +++ L +A A++ + W +
Sbjct: 71 DIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVN--QWPE 128
Query: 127 PVVYIIEKLSHKGS----ILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEF 182
+ ++ +++ S + LE + + +++ E+ +++
Sbjct: 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI--------DPEQLQDKS---------- 170
Query: 183 LKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFT 242
N L + S ++ AAT+ + L + NFD + F
Sbjct: 171 ----------NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK--ANFDKESERHF- 217
Query: 243 CILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLI 302
+ + A D + + ++ + + + AL + I
Sbjct: 218 ----IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM--------ETYMGPALFAITI 265
Query: 303 CVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQ- 361
D + L I F E+ +P Q
Sbjct: 266 EAMKSDIDEVAL----QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321
Query: 362 LEPDLEGLLEEDHDFYDFR----LKVSELVKDVVFIVGSSTCFRHMFNSLHEN--NVMWE 415
L P L L + + D K + + ++ H+ + E+ N W
Sbjct: 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR 381
Query: 416 QTEAALYIMQSVAKNVLPEE-NDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK 474
+AA+ + + P + +V + + ++ L + VR T+ +G +CE + +
Sbjct: 382 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441
Query: 475 ---HPHTLETILNFLLHCLQ 491
+ L +L L+ L
Sbjct: 442 AAINDVYLAPLLQCLIEGLS 461
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP
domain, MIF4G domain, RNA maturation, RNA export,
nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP:
a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A
3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Length = 771
Score = 34.0 bits (77), Expect = 0.27
Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 14/154 (9%)
Query: 325 LWYRLSEILYVKNDDSLTVLFKPHV--ERLIGALCKHCQLEPDLEGLLEEDHDF----YD 378
LW ++ ++ K+ + +P++ + ++ +H L P ED +
Sbjct: 213 LWAQIQKLK--KDRWQERHILRPYLAFDSILCEALQH-NLPPFTPPPHTEDSVYPMPRVI 269
Query: 379 FRLKVSELVKDVVFIVGSSTCFRHMFNSLHE---NNVMWEQTEAALYIMQSVAKNVLPEE 435
FR+ + + GS + R + + E+ A ++ KN +P
Sbjct: 270 FRMFDYTDDPEGPVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLN 329
Query: 436 NDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELC 469
+V + + LP HI V YT+LL+ ELC
Sbjct: 330 YHIVEVIFAELFQLPAPPHIDVMYTTLLI--ELC 361
>2lio_A Uncharacterized protein; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Bacteroides fragilis}
Length = 136
Score = 30.9 bits (70), Expect = 0.69
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 371 EEDHDFYDFRLKVSELVKDVVFIV 394
E + D+++ ++ +EL D V +
Sbjct: 76 ENERDYFEIKMSYNELTGDYVLEI 99
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 32.0 bits (72), Expect = 0.76
Identities = 17/151 (11%), Positives = 52/151 (34%), Gaps = 14/151 (9%)
Query: 362 LEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIV--GSSTCFRHMFNSLHENNVMWEQTEA 419
+ L LL++ + ++++ + + +F + + +
Sbjct: 70 MLKKLFSLLKKS-EAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGD--EKTKIN 126
Query: 420 ALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTL 479
Y ++ +AK ++ +V + + S + + T+L + + E +
Sbjct: 127 VSYALEEIAKA----NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE---NSFKYV 179
Query: 480 ETILNFLLHCL--QQPGLASVTANALQSIST 508
L +++ L + + AL ++T
Sbjct: 180 NPFLPRIINLLHDGDEIVRASAVEALVHLAT 210
Score = 29.3 bits (65), Expect = 5.7
Identities = 8/96 (8%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 433 PEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQ 492
E+ ++V ++ + + L E+ + +P + +I+ + L
Sbjct: 99 KEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKA---NPMLMASIVRDFMSMLSS 155
Query: 493 --PGLASVTANALQSISTACCTHMVGHFNGLLQIIQ 526
N ++++ ++ ++ ++
Sbjct: 156 KNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLH 191
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC
13124, center for structural genomics of infectious DI
csgid; 1.85A {Clostridium perfringens}
Length = 351
Score = 32.0 bits (73), Expect = 0.88
Identities = 10/82 (12%), Positives = 21/82 (25%), Gaps = 6/82 (7%)
Query: 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADE---MLLHQNELGLEAVY 62
V ++ E A + L L+ ++ + E+ AV
Sbjct: 178 GPAMVEIAAEKAGVDVKTDNGEAAFKELEALKPNVVKTYSKSSDLANMFSNGEIVA-AVA 236
Query: 63 FS--AQTMRQKVQNAFFELPSE 82
T+ + +P
Sbjct: 237 SDFAFGTISKAKPEVINVIPES 258
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 31.0 bits (71), Expect = 2.1
Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 13/76 (17%)
Query: 840 ADVADVLYELISVDRQVSNQWLQDT------ISQLPKNTPAGMNAATPEQLIEFHSQVTR 893
DV + + + D I++ + + Q+I+ + V
Sbjct: 337 TDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFLADPETYEDGMRVHQVIDSMNTVME 396
Query: 894 SESAY-------DVGQ 902
+ D+G
Sbjct: 397 EAAEPGEGTIVSDIGF 412
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 30.3 bits (67), Expect = 3.2
Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 5/157 (3%)
Query: 22 NKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPS 81
++ Q + QL K + + +L ++ L+ + +R K + + PS
Sbjct: 428 RSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPS 487
Query: 82 ESHV-SLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKL--SHK 138
LR RT Q+ + KP + + ++
Sbjct: 488 NELYKPLRAEGTNF--RTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANP 545
Query: 139 GSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAA 175
+ EV+ VL ++ L K RE E +LK+
Sbjct: 546 AKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSV 582
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.6 bits (69), Expect = 3.3
Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 12/68 (17%)
Query: 108 TQLALALADLALQMSAWEKPVVYIIEKLSHK-------GSILALLEVLTVLPEEVNVLKL 160
T L A S P Y + K H GS + + L
Sbjct: 1013 TLFVLVSVVEAFIASGITDP--YEMYKYVHVSEVGNCSGSGMGGVSALR---GMFKDRFK 1067
Query: 161 GKNRREEF 168
+ + +
Sbjct: 1068 DEPVQNDI 1075
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 4.2
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 21/66 (31%)
Query: 23 KTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQN-----AFF 77
K +W + +K + +E Q+E Q + K+ N AF+
Sbjct: 103 AASKVMEQEWREKAKKDL------EEWNQRQSE----------QVEKNKINNRIADKAFY 146
Query: 78 ELPSES 83
+ P
Sbjct: 147 QQPDAD 152
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 29.7 bits (67), Expect = 4.9
Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 10/52 (19%)
Query: 402 HMFNSLHENNVMWEQT----EAALYIMQSVAKNVLPEENDVVPKVVEAILHL 449
+ ++E V+WE++ E +++MQ+V +E+ V+P+ ++ I +
Sbjct: 277 RLRYDINEL-VVWEESINVLENEIFLMQAV-----HQESIVIPENIDCIRAM 322
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 29.6 bits (66), Expect = 5.1
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 18/89 (20%)
Query: 201 LKCF-TSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILSLEEQF------HM 253
+ + TS S+++A + V L+P L + N L+ +E+ F +
Sbjct: 149 VSFYLTSIFDHSIYEAFSRIVQKLIPELSFLEN----MLDNLIQHSKIEKAFLFDVNSKI 204
Query: 254 AVAH-------EDLEKCMNYCKLFTELAE 275
V+ + E C + + +L +
Sbjct: 205 YVSTDSNPVDIQMYEVCSEFIDVTIDLFD 233
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 28.9 bits (65), Expect = 8.3
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 10/52 (19%)
Query: 402 HMFNSLHENNVMWEQT----EAALYIMQSVAKNVLPEENDVVPKVVEAILHL 449
+N+L+E V W+++ L+ +Q+V +E+DV+P+ ++AI +
Sbjct: 268 REWNNLYEIAV-WKESINIKGNRLFYIQAV-----HQESDVIPENIDAIRAM 313
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein
structure initiative; NMR {Clostridium thermocellum atcc
27405}
Length = 76
Score = 26.7 bits (59), Expect = 8.5
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 470 EWIDKHPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMV 515
+ + T +N +HCL P ++ +SI AC H +
Sbjct: 11 DVLQMDRGTAPIFINNGMHCLGCP------SSMGESIEDACAVHGI 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.398
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,659,183
Number of extensions: 826959
Number of successful extensions: 1692
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1635
Number of HSP's successfully gapped: 46
Length of query: 912
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 810
Effective length of database: 3,853,851
Effective search space: 3121619310
Effective search space used: 3121619310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.2 bits)