RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6178
(912 letters)
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 95.5 bits (236), Expect = 1e-20
Identities = 89/788 (11%), Positives = 223/788 (28%), Gaps = 36/788 (4%)
Query: 2 ESQPSLDTVYAVVHTL--YLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLE 59
E +P + ++ L +P+ T + Q L QL + +L
Sbjct: 2 EWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP 61
Query: 60 AVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLA- 118
S ++ V+ F P+ ++ + ++ ++ I + + + +A
Sbjct: 62 TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSS----PLIRATVGILITTIAS 117
Query: 119 -LQMSAWEKPVVYIIEKLSHK--GSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAA 175
++ W + + L + + L + E+ + + + L
Sbjct: 118 KGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI----LDSDVLDRPLNIM 173
Query: 176 GPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDA 235
P ++F K + +++ + C + S + + +
Sbjct: 174 IPKFLQFFKH------SSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEP 227
Query: 236 VNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIK 295
L + + M + + Y T+ + + E I
Sbjct: 228 EVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC 287
Query: 296 ALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGA 355
LV + I + ++ + F
Sbjct: 288 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQH 347
Query: 356 LCKHCQLEPDLEGLLEEDHDFYDFRL-KVSELVKDVVFIVGSSTCFRHMFNSLHE--NNV 412
+ E D + +++D D+ L K S DV+ V H+ L E +
Sbjct: 348 DEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHH 407
Query: 413 MWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWI 472
W E+ + ++ ++A+ + +P+++ ++ VR + L W+
Sbjct: 408 EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 467
Query: 473 --DKHPHTLETILNFLLHCLQQ--PGLASVTANALQSISTACCTHMVGHFNGLLQIIQCL 528
L+ ++ LL + + +A ++ CT +V + +L +
Sbjct: 468 VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFA 527
Query: 529 DTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKPEKNKKS 588
+ + I + S E ++ L ++ L ++ +
Sbjct: 528 FSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLEC 587
Query: 589 DPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEHSSRCLR 648
+ + + P + Q + + ++ + D M + L
Sbjct: 588 LSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLS 647
Query: 649 YAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAF 708
+G + L+ ++ + S + T C + + F
Sbjct: 648 GLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADF 707
Query: 709 LPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDH 768
+P L E ++ + I +I V+ L ++
Sbjct: 708 MPILGTNLNPEF-----ISVCNNATWAIGEISIQMGIEM--QPYIPMVLHQ--LVEIINR 758
Query: 769 REANSTVM 776
T++
Sbjct: 759 PNTPKTLL 766
Score = 31.2 bits (69), Expect = 0.68
Identities = 55/403 (13%), Positives = 113/403 (28%), Gaps = 37/403 (9%)
Query: 178 IVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVN 237
++ + C + L S + +S + D
Sbjct: 418 VLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP-DTYL 476
Query: 238 LNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKAL 297
+ T +L + V + L I++ + + K L
Sbjct: 477 KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNL 536
Query: 298 DLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALC 357
++ +G L V + Y + +L P +++
Sbjct: 537 LILYDAIG-------TLADSVGHHLNKPEY-------------IQMLMPPLIQKWNMLKD 576
Query: 358 KHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNV---MW 414
+ L P LE L L E V + T + M N+ +
Sbjct: 577 EDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK 636
Query: 415 EQTEAALYIMQSVAKNVLP--EENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWI 472
+ AL ++ +A+ + E+ ++ + VR +S LLG+L +
Sbjct: 637 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKAC 696
Query: 473 DKHPHT-LETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHF--------NGLLQ 523
+H + + L L P SV NA +I M + L++
Sbjct: 697 FQHVKPCIADFMPILGTNLN-PEFISVCNNATWAIG-EISIQMGIEMQPYIPMVLHQLVE 754
Query: 524 IIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCL 566
II +T + + + + + + ++ C
Sbjct: 755 IINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCT 797
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 72.9 bits (177), Expect = 1e-13
Identities = 70/738 (9%), Positives = 209/738 (28%), Gaps = 69/738 (9%)
Query: 6 SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKI-ADEMLLHQNELGLEAVYFS 64
S ++ L+P++ + + L +L + +L LE +
Sbjct: 2 STAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILA 61
Query: 65 AQTMRQKV------------QNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLAL 112
A T++ ++ Q ++ E+ ++ + + L + + N QL
Sbjct: 62 ALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTAL-VSIEPRIANAAAQLIA 120
Query: 113 ALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEEL 172
A+AD+ L AW + + +++ + L L + ++ + + +
Sbjct: 121 AIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL------GYMCESADPQSQALV 174
Query: 173 KAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNN 232
++ I+I ++ Q+ +S ++ AA + ++ L ++ N
Sbjct: 175 SSSNNILIAIVQGAQST-----------------ETSKAVRLAALNALADSLIFIKNNME 217
Query: 233 FDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPF 292
+ + + + + V + + +++ +
Sbjct: 218 REGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYA-------- 269
Query: 293 SIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERL 352
+ I + + T + S +
Sbjct: 270 -------LTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN-FALSS 321
Query: 353 IGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRH--MFNSLHEN 410
I + + L + + D ++ + ++ G+
Sbjct: 322 IKDVVPNL-LNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA 380
Query: 411 NVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCE 470
+ + A + + + V + + +IL+L + V+ T+ +G + +
Sbjct: 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIAD 440
Query: 471 WIDKHPHTLETILNFLLHCLQ--------QPGLASVTANALQSISTACCTHMVGHFNGLL 522
+ + + + + CL + N ++ ++ A + + + L+
Sbjct: 441 SVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALV 500
Query: 523 QIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQIKP 582
+ + A + + D ++E + + L + +
Sbjct: 501 DGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVD--- 557
Query: 583 EKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITELWPVLSKTCETYQQDARVMEH 642
E + L L + ++ + + ++ L + A + +
Sbjct: 558 ENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDD 617
Query: 643 SSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLL 702
+ +GK F LE ++ S + + + S
Sbjct: 618 VFYAISALAASLGKGFEKYLET-FSPYLLKALNQVDSPVSITAVGFIADISNS-LEEDFR 675
Query: 703 DMVQAFLPPTYAILQEED 720
A + ++ +
Sbjct: 676 RYSDAMMNVLAQMISNPN 693
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 71.5 bits (174), Expect = 3e-13
Identities = 101/829 (12%), Positives = 247/829 (29%), Gaps = 100/829 (12%)
Query: 12 AVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLLHQNELGLEAVYFSAQTMRQK 71
V L + + + + + L QL+ ++ L L A +
Sbjct: 6 TVAKFLAESVIASTAKTSERNLRQLETQDGFGLTLLHVIAST-NLPLSTRLAGALFFKNF 64
Query: 72 VQNAF------FELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQ--MSA 123
++ + LP+ + ++ ++ + N+ Q+ A++ +A
Sbjct: 65 IKRKWVDENGNHLLPANNVELIKKEIVPLMISLP----NNLQVQIGEAISSIADSDFPDR 120
Query: 124 WEKPVVYIIEKLSHK--GSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIE 181
W + + +LS+ + +L V + + L E + L +
Sbjct: 121 WPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLN 180
Query: 182 FLKTCQANCGDNVSLQTKV----------LKCFTSWSSGSLHDAATDCVSALLPILEY-- 229
LKT N + + + +K + ++ + + D + + I
Sbjct: 181 LLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYL 240
Query: 230 -------NNNFDAVNLNVFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIV 282
+ + + +V + S ++ + F ++ +LL I
Sbjct: 241 SYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSIS 300
Query: 283 NESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLT 342
N+ K K+L + Y F ++ I +
Sbjct: 301 NQP--KYDILVSKSLSFLTAVTRIPKYFEI----------FNNESAMNNITE-QIILPNV 347
Query: 343 VLFKPHVERLIGALCKHCQLEPDLEGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRH 402
L + VE ++ + + + DF ++ E + +V + +
Sbjct: 348 TLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGF 407
Query: 403 MFNSLHENNVMWEQTEAALYIMQSVA------------KNVLPEENDVVPKVVEAILHLP 450
+ + + + W+ + +Y+ ++A N L D K + L
Sbjct: 408 VDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSN 467
Query: 451 PSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQ--QPGLASVTANALQSIST 508
HI +R ++ + + L ++ L LQ + + + A ++ I T
Sbjct: 468 NIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525
Query: 509 ACCTHMVGHF--------NGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQ--DQIS 558
++ F N +++ L L + + ++ L ++ + +
Sbjct: 526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE 585
Query: 559 EALKQLCLVQVKPLCELIEKQIKPEKNKKSDPVIWLDRLAAIFKHTSPRIMSEPHPCQGV 618
++++ L + E++ K N + + + AI +T + + +
Sbjct: 586 DSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYT-FESIGAILNYTQRQNLPL------L 638
Query: 619 ITELWPVLSKTCETYQQDAR--VMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKH 676
+ + P Q+ V + + + + + L +PL+ V +
Sbjct: 639 VDSMMPTFLTVFSEDIQEFIPYVFQIIA-FVVEQSATIPESIKPLAQPLLAPNVWELKGN 697
Query: 677 PHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLC 736
+ L S + S D+V +L L F L
Sbjct: 698 IPAVTRLLKSFI------KTDSSIFPDLVP--------VLGIFQRLIASKAYEVHGFDLL 743
Query: 737 TRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHN 785
+ + L +I + +L L + + V K
Sbjct: 744 EHIMLLIDMNRL-RPYIKQIAV--LLLQRLQNSKTERYVKKLTVFFGLI 789
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 63.2 bits (152), Expect = 1e-10
Identities = 88/805 (10%), Positives = 248/805 (30%), Gaps = 95/805 (11%)
Query: 19 LNPNKTEKEKASQWLHQLQKSI---YAWKIADEMLLHQNELG---LEAVYF------SAQ 66
++P++ E E A ++L + + +++ + N +
Sbjct: 11 VSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDP 70
Query: 67 TMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEK 126
++ + Q + + + + +++ ++ L +T + +Q +A + ++ W +
Sbjct: 71 DIKAQYQQRWLAIDANARREVKNYVLHTL--GTETYRPSSASQCVAGIACAEIPVNQWPE 128
Query: 127 PVVYIIEKLSHKGSILAL----LEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEF 182
+ ++ +++ S + LE + + +++ E+ +++ +I+
Sbjct: 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI--------DPEQLQDKSNEILTAIIQG 180
Query: 183 LKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFT 242
++ + S ++ AAT+ + L + N + ++ +
Sbjct: 181 MRKEEP--------------------SNNVKLAATNALLNSLEFTKANFDKESERHFIMQ 220
Query: 243 CILSLEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLI 302
+ A D + + ++ + + + AL + I
Sbjct: 221 VV-------CEATQCPDTRVRVAALQNLVKIMSLYYQYM--------ETYMGPALFAITI 265
Query: 303 CVGHHDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQL 362
D + L G+ L ++ ++ P A L
Sbjct: 266 EAMKSDIDEVALQGIEFWSNV---CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYL 322
Query: 363 EPDLEGLLEEDHDFYDF----RLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVM--WEQ 416
P L L + + D K + + ++ H+ + E+ W
Sbjct: 323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRY 382
Query: 417 TEAALYIMQSVAKNVLPEE-NDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK- 474
+AA+ + + P + +V + + ++ L + VR T+ +G +CE + +
Sbjct: 383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 442
Query: 475 --HPHTLETILNFLLHCLQQPGLASVTANALQSISTACCTHMVGHFNGLL---------- 522
+ L +L L+ L + S +
Sbjct: 443 AINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSS 502
Query: 523 --QIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLCLVQVKPLCELIEKQI 580
I+Q L + D L+ A ++ + E +++ +
Sbjct: 503 FELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL 562
Query: 581 KPEKNKKS--DPVIWLDRLAAIFKHTSPRIMSEPHPCQGVITE-LWPVLSKTCETYQQDA 637
+ E + +S D + + D + + + H I++ + L + ++
Sbjct: 563 QMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSG 622
Query: 638 RVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHC 697
V E + + + +G +F +E + + + LV + +
Sbjct: 623 GVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRA-L 681
Query: 698 VSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVM 757
S ++ + L E+ H + + F ++ V+
Sbjct: 682 QSNIIPFCDEVMQLLLENLGNENV---HRSVKPQILSVFGDIALAIGGEF--KKYLEVVL 736
Query: 758 QCGILATHLDHREANSTVMKFFYDL 782
A+ +++ ++ + +L
Sbjct: 737 NTLQQASQAQVDKSDYDMVDYLNEL 761
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 54.4 bits (129), Expect = 4e-08
Identities = 58/492 (11%), Positives = 151/492 (30%), Gaps = 66/492 (13%)
Query: 19 LNPNKTEKEKASQWLHQLQKSI---YAWKIADEMLLHQNELG---LEAVYF------SAQ 66
++P++ E E A ++L + + +++ + N +
Sbjct: 10 VSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDP 69
Query: 67 TMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEK 126
++ + Q + + + + +++ +++ +T + +Q +A + ++ W +
Sbjct: 70 DIKAQYQQRWLAIDANARREVKNYVLQ--TLGTETYRPSSASQCVAGIACAEIPVNQWPE 127
Query: 127 PVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTC 186
+ ++ +++ N E +E A + + +
Sbjct: 128 LIPQLVANVTN------------------------PNSTEHMKESTLEAIGYICQDIDPE 163
Query: 187 QANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALLPILEYNNNFDAVNLNVFTCILS 246
Q N L + S ++ AAT+ + L + N + ++ + +
Sbjct: 164 QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE 223
Query: 247 LEEQFHMAVAHEDLEKCMNYCKLFTELAESLLDRIVNESMTKQQPFSIKALDLVLICVGH 306
+ D + + ++ + +I+A+
Sbjct: 224 ATQ-------CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-------- 268
Query: 307 HDYEATNLGGLVASITFRLWYRLSEILYVKNDDSLTVLFKPHVERLIGALCKHCQLEPDL 366
D + L G+ I ++ P A L P L
Sbjct: 269 SDIDEVALQGIEFWSNVCDEEMDLAIEA---SEAAEQGRPPEHTSKFYAKGALQYLVPIL 325
Query: 367 ----EGLLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHE--NNVMWEQTEAA 420
E D D K + + ++ H+ + E N W +AA
Sbjct: 326 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAA 385
Query: 421 LYIMQSVAKNVLPEE-NDVVPKVVEAILHLPPSTHIAVRYTSLLLLGELCEWIDK---HP 476
+ + + P + +V + + ++ L + VR T+ +G +CE + + +
Sbjct: 386 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 445
Query: 477 HTLETILNFLLH 488
L +L L+
Sbjct: 446 VYLAPLLQCLIE 457
>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 190
Score = 34.7 bits (80), Expect = 0.027
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 400 FRHMFNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAILHLPPSTHIAVRY 459
+ S + + A ++ KN +P +V + + LP HI V Y
Sbjct: 28 LHCIIKSHWKE-----RKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMY 82
Query: 460 TSLLLLGELC 469
T+LL+ ELC
Sbjct: 83 TTLLI--ELC 90
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 32.1 bits (72), Expect = 0.34
Identities = 43/313 (13%), Positives = 98/313 (31%), Gaps = 32/313 (10%)
Query: 217 TDCVSALLPILEYNNNFDAVNLN--VFTCILSLEEQFHMAVAHEDLEKCMNYCKLFTELA 274
+ V+AL I E + N + ++LN +L+ + L+ NY A
Sbjct: 175 ANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA 234
Query: 275 ESLLDRIVNESMTKQQPFSIKALDLVLICVGHHDYEATNLGGLVASITFRLWYRLSEILY 334
+S+ +R+ + A+ +++ + ++ L+ + L LS
Sbjct: 235 QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPE 294
Query: 335 VKN---------DDSLTVLFKPHVER-----------------LIGALCKHCQLEPDLEG 368
V+ + K ++ ++ L + L
Sbjct: 295 VQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAE 354
Query: 369 LLEEDHDFYDFRLKVSELVKDVVFIVGSSTCFRHMFNSLHENNVMWEQTEAALYIMQSVA 428
L E + D + + ++L + ++ + + V
Sbjct: 355 LKEYATE-VDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLD--LIQTKVNYVVQEAIVVI 411
Query: 429 KNVLPEENDVVPKVVEAIL-HLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLL 487
+++ + + ++ + +L R + ++GE E ID LE+ L
Sbjct: 412 RDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFH 471
Query: 488 HCLQQPGLASVTA 500
Q L +TA
Sbjct: 472 DESTQVQLTLLTA 484
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 324
Score = 30.0 bits (67), Expect = 1.2
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 506 ISTACCTHMVGHFNGLLQIIQCLDTLSISNDAAIGLLKGVAIIVSDMPQDQISEALKQLC 565
I+ T M H + + ++ SN+ + LLK + I D IS ++ +
Sbjct: 176 ITLILATDMARHAEIMDSFKEKMENFDYSNEEHMTLLKMILIKCCD-----ISNEVRPME 230
Query: 566 LVQ--VKPLCELIEKQIKPEKNKKSDPVIWLDR 596
+ + V L E Q EK++ ++DR
Sbjct: 231 VAEPWVDCLLEEYFMQSDREKSEGLPVAPFMDR 263
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus
aureus [TaxId: 1280]}
Length = 122
Score = 27.1 bits (60), Expect = 4.2
Identities = 8/69 (11%), Positives = 20/69 (28%), Gaps = 6/69 (8%)
Query: 771 ANSTVMKFFYDLIHNNRVLSDKDGKKK----AVSEEDF--DMRHRLMKDIVSKHGQALVS 824
++ T+ L + K + E+D + + ++LV
Sbjct: 37 SDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVL 96
Query: 825 NLLQACVFS 833
N + +
Sbjct: 97 NFAKNEELN 105
>d2pk8a1 d.274.1.1 (A:2-95) Hypothetical protein PF0899 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 94
Score = 26.4 bits (58), Expect = 5.2
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 144 LLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLK 184
L+ +L + E++N LK+ + F ++ G FL
Sbjct: 6 LIRILGEIEEKMNELKM-----DGFNPDIILFGREAYNFLS 41
>d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 278
Score = 27.8 bits (61), Expect = 6.6
Identities = 12/134 (8%), Positives = 29/134 (21%), Gaps = 5/134 (3%)
Query: 392 FIVGSSTCFRHM-----FNSLHENNVMWEQTEAALYIMQSVAKNVLPEENDVVPKVVEAI 446
S + A + + +++ E+ D V ++ +
Sbjct: 74 IWQLKSNDVNDLNMMGVHIWDQWKQEDGTIGHAYGFQLGKKNRSLNGEKVDQVDYLLHQL 133
Query: 447 LHLPPSTHIAVRYTSLLLLGELCEWIDKHPHTLETILNFLLHCLQQPGLASVTANALQSI 506
+ P S + L + + L ++ N
Sbjct: 134 KNNPSSRRHITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSNDMALGNPFNVF 193
Query: 507 STACCTHMVGHFNG 520
M+ G
Sbjct: 194 QYNVLQRMIAQVTG 207
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.398
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,292,604
Number of extensions: 153609
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 17
Length of query: 912
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 818
Effective length of database: 1,116,976
Effective search space: 913686368
Effective search space used: 913686368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.1 bits)