Query psy6182
Match_columns 323
No_of_seqs 136 out of 293
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:50:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3963|consensus 100.0 1.6E-67 3.5E-72 486.1 14.1 314 7-321 1-338 (382)
2 PF03281 Mab-21: Mab-21 protei 100.0 4.7E-56 1E-60 417.3 26.4 244 67-319 1-258 (292)
3 cd05400 NT_2-5OAS_ClassI-CCAas 95.1 0.4 8.7E-06 39.8 11.1 85 61-184 29-114 (143)
4 PRK13300 tRNA CCA-pyrophosphor 94.5 5.9 0.00013 39.7 20.0 66 20-87 4-69 (447)
5 TIGR03671 cca_archaeal CCA-add 93.6 8.4 0.00018 38.2 18.2 65 21-87 4-68 (408)
6 PF03645 Tctex-1: Tctex-1 fami 41.5 94 0.002 23.9 6.0 46 14-59 3-50 (101)
7 cd03572 ENTH_epsin_related ENT 35.5 1.6E+02 0.0034 24.2 6.5 74 240-317 36-117 (122)
8 PF11459 DUF2893: Protein of u 29.4 1.1E+02 0.0024 22.6 4.1 51 242-298 2-66 (69)
9 TIGR02497 yscI_hrpB_dom type I 27.4 1.1E+02 0.0024 19.9 3.4 12 4-15 1-12 (39)
10 KOG1467|consensus 26.7 1.6E+02 0.0036 29.9 6.1 67 8-74 324-402 (556)
11 PF09650 PHA_gran_rgn: Putativ 25.0 1.4E+02 0.003 22.8 4.3 54 33-87 11-65 (87)
12 smart00572 DZF domain in DSRM 21.3 2.4E+02 0.0053 26.0 5.8 53 254-315 131-185 (246)
No 1
>KOG3963|consensus
Probab=100.00 E-value=1.6e-67 Score=486.11 Aligned_cols=314 Identities=69% Similarity=1.170 Sum_probs=293.2
Q ss_pred hhHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCccccc-ccccccCcccceecCCCceEEEEE
Q psy6182 7 MMAAQSKILYQLNKYYGERVQTRKASIAKTIREVCKVVQDVLREVEVQEPRFISS-LTECNGRFEGLDVITPTEFEVVLY 85 (323)
Q Consensus 7 ~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~v~~iv~~ll~~v~~~d~~F~~~-l~~~Gs~ye~lkv~~pdefdl~vp 85 (323)
|++++++..++++.||.++++++.++++++.+.+.++|+++++++..+|+||+.. -..+|.++||+++.+|.+|.+.+|
T Consensus 1 m~~l~~~~v~~~~~~~~~rvqlr~~q~~~~i~ev~kvVq~l~~ev~~qe~rf~as~~~~~g~~~e~ldvl~p~~~~~~~~ 80 (382)
T KOG3963|consen 1 MIALQQKTVYQLNRYLDERVQLRKAQIAKTIREVLKVVQDLLKEVEVQEPRFIASLSERTGGRFEGLDVLSPSEFETVLY 80 (382)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHhhccccCcceeccCCCccCcccCCeeEechhHhCCeee
Confidence 7899999999999999999999999999999999999999999999999999976 356889999999999999999999
Q ss_pred ec----------cCCccccccCCCCCceeeeeec--------CCCCCchhhhHH-HhhcCCCcCHHHHHHHHHHHHHHHH
Q psy6182 86 LN----------QMGELNFVDDGSLPGCAVLKLS--------DGRKRSMSLWVE-FITASGYLSARKMRSRFQTLVAQAC 146 (323)
Q Consensus 86 L~----------~~~~~~~~~~~~~pG~~~l~l~--------d~~~~~~~~w~~-~~~~~g~Ls~~kv~~~F~~lv~~ai 146 (323)
|+ +++.++|+++|+.+||+.++++ ++++++++.|.+ |.+++||++|.||++||+.+|.+|+
T Consensus 81 l~~l~~~r~~~~Q~~v~~~~~dgtl~~C~~~~Ls~~~~~e~t~~~~rS~~~wve~~~sas~~~~~~kv~~~F~~lv~~al 160 (382)
T KOG3963|consen 81 LNFLLLVRALKLQMGVFNFVDDGTLPGCAVLKLSLRLFDEGTDGRKRSMSLWVEHFNSASGYLSPAKVLSRFRTLVAQAL 160 (382)
T ss_pred chhhhcchhHHHhhcccccccccccCCCCccchhhhhhhhhhhhhhhhHHHHHHhhcccccccCCHHHHHHHHHHHHHHH
Confidence 99 8889999999999999989887 788899999998 8889999999999999999999999
Q ss_pred HhcccCCceeeecCCCeeEEEEce---EEEEEEEEEEEeCCCCCccCCCCCCCCCCCCCccccccccccceeEeeCcccc
Q psy6182 147 DKCAYRDSVKMIADTTEVKLRIRE---RYIVQITPSFKCGGIWPRSAGHWPLPQIPWPHPNLVVETKTEGCDLLSKECAA 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~~a~tl~v~~---~isvdlvPav~~~~~Wp~~a~~w~~~~~~wp~~~~~~~~~~~g~~lvpk~~~~ 223 (323)
.+|.+++.+.++.++.++++.+.. ++.++|||||+++|+||++|.+||.+..+||++.++++||++||||+|+....
T Consensus 161 ~~c~~~~qv~Ml~~~~vvk~~~~~~~~~~~~eivPav~~~g~Wp~~A~~wpl~~~~WP~~~~~~evks~GF~ll~~~cs~ 240 (382)
T KOG3963|consen 161 DKCQLSDQVKMLGDTSVVKLRIRESIYRMLVEIVPAVHCPGIWPRSAAHWPLEHIPWPGPNRVEEVKSEGFNLLSKECSI 240 (382)
T ss_pred HHHhhccccccccchHHHHHHHHHHHHHHHHhhcceeecCCCCchhhhhCccccCCCCcHHHHHHHHhccccccchhhhh
Confidence 999999999998888898888774 56699999999999999999999999999999999999999999999955432
Q ss_pred ccCcCCCcccCccccchHHHHHHHHccCChHHHHHHHHHHHHhcCCCCCCC-CChHHHHHHHHHHHHhCCCCCCCCcccH
Q psy6182 224 MQGKQSAMEGDAWVMSFTDVESKLLIGGCRKKCLSILKTLRDRHLELPGNP-VTNYHMKTLLLYECEKHPNELEWDESCL 302 (323)
Q Consensus 224 ~~~~~~~~~~~~WrlSF~~~E~~ll~~~~r~~cl~ilK~L~~~~l~~~g~~-LtsyhLKTvlL~~~~~~p~~~~W~~~~L 302 (323)
.++++++.++.||+||..+|..+.++|||++|++|||.|++.+..+||++ +|+|||||++||+||++|+++||+++.+
T Consensus 241 -~~~kn~~~~~~Wrl~f~~aE~~L~~gg~rrk~~qi~k~Lr~~~id~pg~p~it~yhLkt~mlw~CEkhp~~~dW~E~~~ 319 (382)
T KOG3963|consen 241 -KQGKNSMEEDAWRLSFAEAENRLEKGGCRRKCLQILKTLRDRHIDLPGNPKITNYHLKTLLLWECEKHPREYDWQEDCL 319 (382)
T ss_pred -hhccCCcchhhHHHhhHHHHHHHHhcchHHHHHHHHHHHHHHHccCCCCCcccHHHHHHHHHHHHhhCccccccchhHH
Confidence 23345588899999999999999999999999999999999998889977 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy6182 303 GDRINGILLQLISCLRMLF 321 (323)
Q Consensus 303 ~~rl~~lL~~L~~cL~~~~ 321 (323)
++||++++++|++||++=+
T Consensus 320 ~~rl~gii~~L~~CL~~r~ 338 (382)
T KOG3963|consen 320 GDRLLGIILQLISCLQCRR 338 (382)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998743
No 2
>PF03281 Mab-21: Mab-21 protein
Probab=100.00 E-value=4.7e-56 Score=417.27 Aligned_cols=244 Identities=39% Similarity=0.742 Sum_probs=216.8
Q ss_pred cCcccceecCCCceEEEEEeccCCccc--cccCCCCCceeeeeecCCCCCchhhhHHHhh-cCCCcCHHHHHHHHHHHHH
Q psy6182 67 GRFEGLDVITPTEFEVVLYLNQMGELN--FVDDGSLPGCAVLKLSDGRKRSMSLWVEFIT-ASGYLSARKMRSRFQTLVA 143 (323)
Q Consensus 67 s~ye~lkv~~pdefdl~vpL~~~~~~~--~~~~~~~pG~~~l~l~d~~~~~~~~w~~~~~-~~g~Ls~~kv~~~F~~lv~ 143 (323)
|||||+||.+|||||+||+|+.++... ++.++..|||+.+++ .+++.+.|.+|++ .+|||||+||++||+++|+
T Consensus 1 S~ye~lkv~~pdefd~~v~L~~~~~~~~~~~~~~~~pg~~~l~l---~~~~~~~~~~~l~~~~~yLs~~kv~~~f~~lv~ 77 (292)
T PF03281_consen 1 SYYEGLKVGSPDEFDVMVPLKFPRNFKIFLEEDWSPPGYVFLRL---RPRDSSFWDQWLDCEDGYLSPSKVLSWFRKLVQ 77 (292)
T ss_pred CCccceEECCCCeEEEEEEecCCCCcceEeeecCCCCceEEEEe---ccCChhhHHHHHHhcCCeeCHHHHHHHHHHHHH
Confidence 899999999999999999999443332 556778999999999 3456788999887 8999999999999999999
Q ss_pred HHHHhcccCC------ceeeecCCCeeEEEEc---eEEEEEEEEEEEeCCCCCccCCCCCCCCCCCCCccccccccccce
Q psy6182 144 QACDKCAYRD------SVKMIADTTEVKLRIR---ERYIVQITPSFKCGGIWPRSAGHWPLPQIPWPHPNLVVETKTEGC 214 (323)
Q Consensus 144 ~ai~~~~~~~------~~~~~~~~~a~tl~v~---~~isvdlvPav~~~~~Wp~~a~~w~~~~~~wp~~~~~~~~~~~g~ 214 (323)
+|++++.... ..+..++|+++||.++ ++|+|||||||++++.||..|++|+....+||++...++++++||
T Consensus 78 ~ai~~~~~~~~~~~~~~~~~~~~g~a~tl~v~~~~~~i~vdlVPa~~~~~~WP~~a~~~~~~~~~Wp~~~~~~~~~~~~~ 157 (292)
T PF03281_consen 78 KAINKCSHSSKRGYVSVISLKPGGPAVTLIVESGGRRISVDLVPAFEFPGGWPRSAQEWLRRFNGWPSPKLIQEIKSFGF 157 (292)
T ss_pred HHHHHhhccccCCccceeeccCCCceEEEEEecCCceEEEEEEEEEEEcCCCCcccccccccccCCCchhhhhhcccCce
Confidence 9999998765 2244568999999998 479999999999998999999999999999999999999999999
Q ss_pred eEeeCccccccCcCCCcccCccccchHHHHHHHHc--cCChHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHhCC
Q psy6182 215 DLLSKECAAMQGKQSAMEGDAWVMSFTDVESKLLI--GGCRKKCLSILKTLRDRHLELPGNPVTNYHMKTLLLYECEKHP 292 (323)
Q Consensus 215 ~lvpk~~~~~~~~~~~~~~~~WrlSF~~~E~~ll~--~~~r~~cl~ilK~L~~~~l~~~g~~LtsyhLKTvlL~~~~~~p 292 (323)
||||++.. +....+++||+||+.+|+++++ ++|+++||||||+|++.+.. .++.|+||||||+|||+|+++|
T Consensus 158 ~lvpk~~~-----~~~~~~~~Wrlsf~~~E~~ll~~~~~~~~~~l~llk~l~~~~~~-~~~~l~syhLkt~ll~~~~~~p 231 (292)
T PF03281_consen 158 HLVPKPCS-----PNSDSENSWRLSFSVAERQLLKNLNGCRKKCLRLLKALRDRHLT-NLSGLSSYHLKTVLLWLCEKHP 231 (292)
T ss_pred EEeeeccC-----CCCCCCceEEEehHHHHHHHHHhccccHHHHHHHHHHHHHhccc-cCCCccHHHHHHHHHHHHHcCC
Confidence 99999332 2336889999999999999999 79999999999999998872 2347999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHH
Q psy6182 293 NELEWDESCLGDRINGILLQLISCLRM 319 (323)
Q Consensus 293 ~~~~W~~~~L~~rl~~lL~~L~~cL~~ 319 (323)
.+++|+++++++||++||++|.+||++
T Consensus 232 ~~~~W~~~~l~~~l~~~l~~L~~~L~~ 258 (292)
T PF03281_consen 232 SSSDWSEENLGERLLDLLDFLIKCLQE 258 (292)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhc
Confidence 988999999999999999999999975
No 3
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more dis
Probab=95.07 E-value=0.4 Score=39.80 Aligned_cols=85 Identities=11% Similarity=0.223 Sum_probs=56.2
Q ss_pred cccccccCcccceecCCCceEEEEEeccCCccccccCCCCCceeeeeecCCCCCchhhhHHHhhcCCCcCHHHHHHHHHH
Q psy6182 61 SLTECNGRFEGLDVITPTEFEVVLYLNQMGELNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKMRSRFQT 140 (323)
Q Consensus 61 ~l~~~Gs~ye~lkv~~pdefdl~vpL~~~~~~~~~~~~~~pG~~~l~l~d~~~~~~~~w~~~~~~~g~Ls~~kv~~~F~~ 140 (323)
.+...|||--|.-+......|++|.+..... . ....+.++++.+..
T Consensus 29 ~~~~~GS~a~~T~i~~~sDiD~~v~~~~~~~--~--------------------------------~~~~~~~~~~~l~~ 74 (143)
T cd05400 29 EVFLQGSYARGTALRGDSDIDLVVVLPDDTS--F--------------------------------AEYGPAELLDELGE 74 (143)
T ss_pred EEEEEcceeCCCCCCCCCceeEEEEEcCccc--c--------------------------------cccCHHHHHHHHHH
Confidence 3677999999987776677787777761100 0 01244566777777
Q ss_pred HHHHHHHhcccCCceeeecCCCeeEEEEce-EEEEEEEEEEEeCC
Q psy6182 141 LVAQACDKCAYRDSVKMIADTTEVKLRIRE-RYIVQITPSFKCGG 184 (323)
Q Consensus 141 lv~~ai~~~~~~~~~~~~~~~~a~tl~v~~-~isvdlvPav~~~~ 184 (323)
.+.+.-.. ...+...+++++|.+.. .+.||+||++...+
T Consensus 75 ~L~~~~~~-----~~~~~~~~~~v~v~~~~~~~~vDvvP~~~~~~ 114 (143)
T cd05400 75 ALKEYYGA-----NEEVKAQHRSVTVKFKGQGFHVDVVPAFEADS 114 (143)
T ss_pred HHHHhcCc-----ccccccCceEEEEEEcCCCeEEEEEEEeecCC
Confidence 66653221 11223457899999875 89999999998886
No 4
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional
Probab=94.49 E-value=5.9 Score=39.73 Aligned_cols=66 Identities=6% Similarity=0.085 Sum_probs=51.1
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccCcccceecCCCceEEEEEec
Q psy6182 20 KYYGERVQTRKASIAKTIREVCKVVQDVLREVEVQEPRFISSLTECNGRFEGLDVITPTEFEVVLYLN 87 (323)
Q Consensus 20 ~~~~~~v~~~~~~~~~~~~~v~~iv~~ll~~v~~~d~~F~~~l~~~Gs~ye~lkv~~pdefdl~vpL~ 87 (323)
.-.++.|+.+++++.+..+.++.++..|-+.++..+.. ..+...||+--|.-...-...||.|.+.
T Consensus 4 ~evl~~i~Ps~eE~~~l~~~~~~l~~~L~~~~~~~~~~--~~V~l~GS~ArgT~L~GdsDIDIFv~fp 69 (447)
T PRK13300 4 EEVLERIKPTEEEREKLKKVAEELIERLEEAIKELGLD--AEVELVGSTARGTWLSGDRDIDIFVLFP 69 (447)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCc--eEEEEEeeecCCcccCCCCceeEEEEeC
Confidence 44567899999999998888888888888888775543 4477899999997766445778777765
No 5
>TIGR03671 cca_archaeal CCA-adding enzyme.
Probab=93.56 E-value=8.4 Score=38.16 Aligned_cols=65 Identities=8% Similarity=0.066 Sum_probs=48.7
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccCcccceecCCCceEEEEEec
Q psy6182 21 YYGERVQTRKASIAKTIREVCKVVQDVLREVEVQEPRFISSLTECNGRFEGLDVITPTEFEVVLYLN 87 (323)
Q Consensus 21 ~~~~~v~~~~~~~~~~~~~v~~iv~~ll~~v~~~d~~F~~~l~~~Gs~ye~lkv~~pdefdl~vpL~ 87 (323)
..++.|+.+++++.+..+.++.++..|-+.++...+. ..+...||+-.|.-..-....||.|.+.
T Consensus 4 ~vl~~i~Ps~eE~~~~~~~~~~l~~~l~~~~~e~~~~--~~v~~~GS~ArgT~L~G~sDIDIfi~f~ 68 (408)
T TIGR03671 4 EVLERIKPTEEEREKLKKVADELIARLEEIIEELGVD--AEVVLVGSYARGTWLKGDRDIDIFILFP 68 (408)
T ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCc--ceEEEEeeEecCCccCCCCceeEEEEeC
Confidence 3467899999999998888888888877777775443 3467799998887665455778777665
No 6
>PF03645 Tctex-1: Tctex-1 family; InterPro: IPR005334 Tctex-1 is a dynein light chain. Dynein translocates rhodopsin-bearing vesicles along microtubules and it has been shown that Tctex-1 can bind to the cytoplasmic tail of rhodopsin. An efficient vectorial transport system must be required to deliver large numbers of newly synthesized rhodopsin molecules (~107 molecules per day per photoreceptor) to the base of the outer segment of the photoreceptor, Tctex-1 may well play a role in this process. C-terminal rhodopsin mutations responsible for retinitis pigmentosa inhibit the interaction between Tctex-1 and rhodopsin, which may be the molecular basis of retinitis pigmentosa. In the mouse, the chromosomal location and pattern of expression of Tctex-1 make it a candidate for involvement in male sterility [].; PDB: 1YGT_A 3FM7_A 2PG1_E 1XDX_B.
Probab=41.49 E-value=94 Score=23.92 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhc--CCccc
Q psy6182 14 ILYQLNKYYGERVQTRKASIAKTIREVCKVVQDVLREVEVQ--EPRFI 59 (323)
Q Consensus 14 ~~~~L~~~~~~~v~~~~~~~~~~~~~v~~iv~~ll~~v~~~--d~~F~ 59 (323)
+++-+++...+++.-..=+-.++.+..++|++++.++++.. .+||+
T Consensus 3 v~~ii~~~l~~~l~~~~Y~~~~~~~~~~~I~~~i~~~lk~~~~~~ryK 50 (101)
T PF03645_consen 3 VKEIIEEVLEEKLEDQKYDPEKAQQWSKEISDEILERLKKLGYSKRYK 50 (101)
T ss_dssp HHHHHHHHHHHHHCTS---HHHHHHHHHHHHHHHHHHHHCC--T-SCE
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce
Confidence 33444444444444445456778888999999999999997 46665
No 7
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=35.48 E-value=1.6e+02 Score=24.20 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=40.4
Q ss_pred hHHHHHHHHc----cCCh--HHHHHHHHHHHHhcCC-C-CCCCCChHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q psy6182 240 FTDVESKLLI----GGCR--KKCLSILKTLRDRHLE-L-PGNPVTNYHMKTLLLYECEKHPNELEWDESCLGDRINGILL 311 (323)
Q Consensus 240 F~~~E~~ll~----~~~r--~~cl~ilK~L~~~~l~-~-~g~~LtsyhLKTvlL~~~~~~p~~~~W~~~~L~~rl~~lL~ 311 (323)
|....-.|++ ++.+ .+||+|||++++..-. . ..-.-.+|.+||+.=| +.|.+ .=..+.+.+.+..-=.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f---~g~~D-p~~Gd~~~~~VR~~A~ 111 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANY---KGPPD-PLKGDSLNEKVREEAQ 111 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHc---CCCCC-cccCcchhHHHHHHHH
Confidence 3344444444 3433 6899999999985410 0 0002457999995444 24222 2234556666666555
Q ss_pred HHHHHH
Q psy6182 312 QLISCL 317 (323)
Q Consensus 312 ~L~~cL 317 (323)
++...|
T Consensus 112 El~~~i 117 (122)
T cd03572 112 ELIKAI 117 (122)
T ss_pred HHHHHH
Confidence 555443
No 8
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=29.39 E-value=1.1e+02 Score=22.58 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=37.4
Q ss_pred HHHHHHHc-------cCChHHHHHHHHHHHHh---c----CCCCCCCCChHHHHHHHHHHHHhCCCCCCCC
Q psy6182 242 DVESKLLI-------GGCRKKCLSILKTLRDR---H----LELPGNPVTNYHMKTLLLYECEKHPNELEWD 298 (323)
Q Consensus 242 ~~E~~ll~-------~~~r~~cl~ilK~L~~~---~----l~~~g~~LtsyhLKTvlL~~~~~~p~~~~W~ 298 (323)
..|+++|. ......+..+|-+++.= . ++ ..+|.-.|-+|||.-+++.. .|.
T Consensus 2 ~PErA~LE~l~~~p~~~s~e~a~~l~egL~nLrp~~lq~LL~----~C~svKvkRLfl~lA~~~~h--~W~ 66 (69)
T PF11459_consen 2 VPERAILELLSEVPKRQSFEEADELMEGLRNLRPRVLQELLE----HCTSVKVKRLFLYLAERAGH--PWF 66 (69)
T ss_pred cHHHHHHHHHHhCCccCCHHHHHHHHHHHhhcCHHHHHHHHH----HCccHHHHHHHHHHHHHcCC--chH
Confidence 46777777 23456788888888861 1 22 57889999999999999754 485
No 9
>TIGR02497 yscI_hrpB_dom type III secretion apparatus protein, YscI/HrpB, C-terminal domain. This model represents the conserved C-terminal domain of a protein conserved in across species in the bacterial type III secretion apparatus. This protein is designated YscI (Yop proteins translocation protein I) in Yersinia and HrpB (hypersensitivity response and pathogenicity protein B) in plant pathogens such as Pseudomonas syringae.
Probab=27.40 E-value=1.1e+02 Score=19.89 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=9.9
Q ss_pred ChhhhHHHHHHH
Q psy6182 4 PSDMMAAQSKIL 15 (323)
Q Consensus 4 ~~~~~~~~~~~~ 15 (323)
|.||+..|+.+.
T Consensus 1 P~~ll~~Q~~l~ 12 (39)
T TIGR02497 1 PEDLLQMQRALM 12 (39)
T ss_pred CHHHHHHHHHHH
Confidence 889999888764
No 10
>KOG1467|consensus
Probab=26.70 E-value=1.6e+02 Score=29.91 Aligned_cols=67 Identities=15% Similarity=0.332 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHhhcccchhHHHH-HHHHHH-----------HHHHHHHHHHHhcCCcccccccccccCccccee
Q psy6182 8 MAAQSKILYQLNKYYGERVQTRKASIAK-TIREVC-----------KVVQDVLREVEVQEPRFISSLTECNGRFEGLDV 74 (323)
Q Consensus 8 ~~~~~~~~~~L~~~~~~~v~~~~~~~~~-~~~~v~-----------~iv~~ll~~v~~~d~~F~~~l~~~Gs~ye~lkv 74 (323)
.++...|++.+++|..+++-+..+-+++ +.+.++ .+|++++.+-+..-+.|+..+..+.+-+||-+.
T Consensus 324 ~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG~~~ 402 (556)
T KOG1467|consen 324 SEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFRVVVVDSRPNLEGRKL 402 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceEEEEEeCCCCcchHHH
Confidence 4788899999999999999888877665 333333 467888888888888999767777778887543
No 11
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=24.95 E-value=1.4e+02 Score=22.80 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccc-ccccccCcccceecCCCceEEEEEec
Q psy6182 33 IAKTIREVCKVVQDVLREVEVQEPRFISS-LTECNGRFEGLDVITPTEFEVVLYLN 87 (323)
Q Consensus 33 ~~~~~~~v~~iv~~ll~~v~~~d~~F~~~-l~~~Gs~ye~lkv~~pdefdl~vpL~ 87 (323)
...|++.+++.+..+-++..- +....++ +..+|+-.+|.-...||.+++.+.|.
T Consensus 11 ~~eAr~~~~~~~~~l~~~~~~-~~~W~gd~l~f~~~gv~G~l~V~~d~v~l~v~Lg 65 (87)
T PF09650_consen 11 REEARRRAEELAEKLAEEYGV-ECTWEGDRLSFSGQGVDGTLDVADDHVRLEVKLG 65 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-EEEEEcCEEEEEeCCceEEEEEcCCEEEEEEEcH
Confidence 344566666666655555432 3344444 44567778888888999999888876
No 12
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins.
Probab=21.29 E-value=2.4e+02 Score=26.03 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhc--CCCCCCCCChHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHH
Q psy6182 254 KKCLSILKTLRDRH--LELPGNPVTNYHMKTLLLYECEKHPNELEWDESCLGDRINGILLQLIS 315 (323)
Q Consensus 254 ~~cl~ilK~L~~~~--l~~~g~~LtsyhLKTvlL~~~~~~p~~~~W~~~~L~~rl~~lL~~L~~ 315 (323)
+...||||-+|.+. |. +|+++.+.-+.=+.+... =+....+++|.++++.+..
T Consensus 131 ~iviRilKd~~~R~~~~~----pL~~w~iELl~~~~i~~~-----~~~l~~~~a~RR~fe~lAs 185 (246)
T smart00572 131 VIVIRVLRDLCNRVPTWQ----PLSGWPLELLVEKAIGSA-----RQPLGLGDAFRRVFECLAS 185 (246)
T ss_pred hhHHHHHHHHHHhccccc----ccccccHHHHHHHHhccC-----CCCCCHHHHHHHHHHHHHh
Confidence 34567777777754 44 699999998888877632 2456799999999887764
Done!