Query psy6182
Match_columns 323
No_of_seqs 136 out of 293
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 19:50:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1px5_A 2'-5'-oligoadenylate sy 98.4 7.4E-06 2.5E-10 77.7 17.6 243 16-316 9-265 (349)
2 1r89_A TRNA nucleotidyltransfe 94.7 1.8 6.2E-05 41.8 17.7 64 15-87 4-67 (437)
3 4at7_A Interleukin enhancer-bi 31.9 1.1E+02 0.0037 28.6 7.1 57 251-314 192-250 (364)
4 3nyb_A Poly(A) RNA polymerase 20.8 4.6E+02 0.016 23.5 21.5 64 251-314 158-226 (323)
5 1q79_A Poly(A) polymerase alph 20.8 5.8E+02 0.02 24.7 21.0 56 252-313 219-276 (514)
6 1xdx_A Tctex1 light chain prot 20.4 1.6E+02 0.0055 22.3 5.1 45 11-59 19-63 (114)
7 1ygt_A Cytoplasmic dynein ligh 20.4 1.7E+02 0.0059 22.0 5.3 45 11-59 16-60 (111)
8 3hj4_A Minor editosome-associa 19.3 1.9E+02 0.0064 27.2 6.3 72 8-87 1-72 (384)
9 2r9i_A Putative phage capsid p 18.2 3.1E+02 0.011 21.1 6.1 44 5-48 7-51 (141)
10 2hhp_A Poly(A) polymerase; tem 15.1 7.9E+02 0.027 23.8 20.5 57 252-314 206-264 (530)
No 1
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=98.45 E-value=7.4e-06 Score=77.70 Aligned_cols=243 Identities=10% Similarity=0.162 Sum_probs=140.6
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhcC-Ccccc-cccccccCcccceecCCCceEEEEEeccCCccc
Q psy6182 16 YQLNKYYGERVQTRKASIAKTIREVCKVVQDVLREVEVQE-PRFIS-SLTECNGRFEGLDVITPTEFEVVLYLNQMGELN 93 (323)
Q Consensus 16 ~~L~~~~~~~v~~~~~~~~~~~~~v~~iv~~ll~~v~~~d-~~F~~-~l~~~Gs~ye~lkv~~pdefdl~vpL~~~~~~~ 93 (323)
.+|+.|..++|+..++++.++.+.+..|...|-+...... ..+.. .+...|||--|..+..-...||+|.|. ..-
T Consensus 9 ~~l~~fi~~~l~p~~~~~~~i~~~~~~I~~~L~~~~~~~~~~~~~v~~v~~~GSyargT~lrg~sDiDlvV~l~--~~~- 85 (349)
T 1px5_A 9 RDLDKFIEDHLLPNTXFRTQVKEAIDIVXRFLKERCFQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVVFLT--KLT- 85 (349)
T ss_dssp GGHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEEEEEC--------CEEEEEEEEEE--SCS-
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhhcccccCCcceEEEEEecCcCCCcccCCCCceeEEEEEC--CCC-
Confidence 4689999999999988888766655555544433321111 01322 356789999999988778899888887 110
Q ss_pred cccCCCCCceeeeeecCCCCCchhhhHHHhhcCCCcCHHHHHHHHHHHHHHHHHhcccCCceeee----cCCCeeEEEEc
Q psy6182 94 FVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKMRSRFQTLVAQACDKCAYRDSVKMI----ADTTEVKLRIR 169 (323)
Q Consensus 94 ~~~~~~~pG~~~l~l~d~~~~~~~~w~~~~~~~g~Ls~~kv~~~F~~lv~~ai~~~~~~~~~~~~----~~~~a~tl~v~ 169 (323)
+.+.+.+ ...++++.+++.+.+.-..-.+...+.+. ...-++++.+.
T Consensus 86 ---------------------~~~~~~~--------~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~ 136 (349)
T 1px5_A 86 ---------------------SFEDQLR--------RRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLS 136 (349)
T ss_dssp ---------------------CTTHHHH--------THHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEE
T ss_pred ---------------------chhhHHh--------hHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEE
Confidence 0111111 12467777777776655443333223221 12335777774
Q ss_pred -----eEEEEEEEEEEEeCCCCCccCCCCCCCCCCCCCccccccccccceeEeeCccccccCcCCCcccCccccchHHHH
Q psy6182 170 -----ERYIVQITPSFKCGGIWPRSAGHWPLPQIPWPHPNLVVETKTEGCDLLSKECAAMQGKQSAMEGDAWVMSFTDVE 244 (323)
Q Consensus 170 -----~~isvdlvPav~~~~~Wp~~a~~w~~~~~~wp~~~~~~~~~~~g~~lvpk~~~~~~~~~~~~~~~~WrlSF~~~E 244 (323)
..+.||+|||+..-+.. .....|++..... +++..... .....|..+|+...
T Consensus 137 ~~~~~~~~~vDVvPa~~~l~~~---------~~~~~~~~~~y~~-------li~~~~~~-------~~~g~~~~~~~~~h 193 (349)
T 1px5_A 137 SPQLQQEVEFDVLPAFDALGQW---------TPGYKPNPEIYVQ-------LIKECKSR-------GKEGEFSTCFTELQ 193 (349)
T ss_dssp ETTTTEEEEEEEEEEECSSCSC---------CTTSCCCHHHHHH-------HHHHHHHH-------TCTTTTGGGGHHHH
T ss_pred ccCcCCceEEEEEEehhhhccc---------ccccCCChHHHHH-------HHhhcccc-------ccCccchhcCHHHH
Confidence 47999999999743210 0111233321110 22111000 12347999999988
Q ss_pred HHHHc--cCChHHHHHHHHHHHHhc-CCCCCCCCChHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHH
Q psy6182 245 SKLLI--GGCRKKCLSILKTLRDRH-LELPGNPVTNYHMKTLLLYECEKHPNELEWDESCLGDRINGILLQLISC 316 (323)
Q Consensus 245 ~~ll~--~~~r~~cl~ilK~L~~~~-l~~~g~~LtsyhLKTvlL~~~~~~p~~~~W~~~~L~~rl~~lL~~L~~c 316 (323)
...++ ++..+..+|++|..+... .+..+..++||.|..+..++.+..+... +-++++.|..+|..+.+.
T Consensus 194 ~~~v~~~~~~~k~lIRLlK~W~~~~~~~~~~~~~ssy~lELL~~~a~e~~~~~~---~~~~~~~f~~vle~l~~~ 265 (349)
T 1px5_A 194 RDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSRKT---DFSTAQGFQTVLELVLKH 265 (349)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHHTCCS---SCCHHHHHHHHHHHHHTG
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHHHhCCCcc---CCCHHHHHHHHHHHHHhC
Confidence 88887 334478999999999864 2222336999999999999999865443 345788899988877653
No 2
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=94.70 E-value=1.8 Score=41.84 Aligned_cols=64 Identities=13% Similarity=-0.030 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccCcccceecCCCceEEEEEec
Q psy6182 15 LYQLNKYYGERVQTRKASIAKTIREVCKVVQDVLREVEVQEPRFISSLTECNGRFEGLDVITPTEFEVVLYLN 87 (323)
Q Consensus 15 ~~~L~~~~~~~v~~~~~~~~~~~~~v~~iv~~ll~~v~~~d~~F~~~l~~~Gs~ye~lkv~~pdefdl~vpL~ 87 (323)
.+-++.| ++++...++++.++.+.++.|...|-+ +...+..+||+--|.-+..-.+.||.|.+.
T Consensus 4 ~~~~~~~-l~~i~P~~~E~~~~~~~~~~I~~~L~~--------~~~~v~~~GS~AkgT~Lrg~sDIDIfv~f~ 67 (437)
T 1r89_A 4 EEILEKA-LELVIPDEEEVRKGREAEEELRRRLDE--------LGVEYVFVGSYARNTWLKGSLEIDVFLLFP 67 (437)
T ss_dssp HHHHHHH-HHHHSCCHHHHHHHHHHHHHHHHHHHH--------HTCCEEEEHHHHHTCCCTTCCEEEEEEEEC
T ss_pred HHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHHHHh--------CCCeEEEeccccCCCcCCCCCCceEEEEcC
Confidence 3445554 679999999988876666666554444 222466789999998888777888888776
No 3
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=31.94 E-value=1.1e+02 Score=28.64 Aligned_cols=57 Identities=26% Similarity=0.325 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHHhc--CCCCCCCCChHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHH
Q psy6182 251 GCRKKCLSILKTLRDRH--LELPGNPVTNYHMKTLLLYECEKHPNELEWDESCLGDRINGILLQLI 314 (323)
Q Consensus 251 ~~r~~cl~ilK~L~~~~--l~~~g~~LtsyhLKTvlL~~~~~~p~~~~W~~~~L~~rl~~lL~~L~ 314 (323)
.|-+..+||||-+|.+. |. +|+.|.|.-+.-++.+..|.. +.-.+++.|.++|.-|.
T Consensus 192 s~v~~lIRIlkDlc~R~~~w~----pL~~waLELL~~~Ai~s~~~~---~~l~~~~afRRVLElLA 250 (364)
T 4at7_A 192 STVKVLIRLLKDLRIRFPGFE----PLTPWILDLLGHYAVMNNPTR---QPLALNVAYRRCLQILA 250 (364)
T ss_dssp HHHHHHHHHHHHHHHHCGGGT----TCCHHHHHHHHHHHHHSSTTS---SCCCHHHHHHHHHHHHH
T ss_pred cccceeehhhHHHHHhcCCcC----CCCHHHHHHHHHHHHhcCCCC---CCcCHHHHHHHHHHHHH
Confidence 34456788999988875 43 799999999998888886543 34568899988887553
No 4
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=20.82 E-value=4.6e+02 Score=23.50 Aligned_cols=64 Identities=14% Similarity=0.070 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHHHh-cCCCCC-CCCChHHHHHHHHHHHHhCCCC--CC-CCcccHHHHHHHHHHHHH
Q psy6182 251 GCRKKCLSILKTLRDR-HLELPG-NPVTNYHMKTLLLYECEKHPNE--LE-WDESCLGDRINGILLQLI 314 (323)
Q Consensus 251 ~~r~~cl~ilK~L~~~-~l~~~g-~~LtsyhLKTvlL~~~~~~p~~--~~-W~~~~L~~rl~~lL~~L~ 314 (323)
...+..++++|..... .+..+. +.|+||.+-.++++.|..+|.. .+ -...++++.|++++++..
T Consensus 158 ~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~ 226 (323)
T 3nyb_A 158 PGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYG 226 (323)
T ss_dssp TTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccccHHHHHHHHHHHhc
Confidence 4457788899988874 343221 2599999999999999998742 11 234679999999988754
No 5
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=20.80 E-value=5.8e+02 Score=24.72 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHHh-cCCCCC-CCCChHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHH
Q psy6182 252 CRKKCLSILKTLRDR-HLELPG-NPVTNYHMKTLLLYECEKHPNELEWDESCLGDRINGILLQL 313 (323)
Q Consensus 252 ~r~~cl~ilK~L~~~-~l~~~g-~~LtsyhLKTvlL~~~~~~p~~~~W~~~~L~~rl~~lL~~L 313 (323)
..+..++++|.-..+ .+...- +-|+||++-.++.+.|..+|+. .+++.+.+++..+
T Consensus 219 ~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~P~~------s~~~LL~~FF~~y 276 (514)
T 1q79_A 219 NFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNA------IASTLVHKFFLVF 276 (514)
T ss_dssp HHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHSTTC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHH
Confidence 346789999988774 332121 2599999999999999999853 4777777766654
No 6
>1xdx_A Tctex1 light chain protein; chlamydomonas flagella, tctex1 dimer, solution structure, contractIle protein; NMR {Chlamydomonas reinhardtii}
Probab=20.44 E-value=1.6e+02 Score=22.30 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy6182 11 QSKILYQLNKYYGERVQTRKASIAKTIREVCKVVQDVLREVEVQEPRFI 59 (323)
Q Consensus 11 ~~~~~~~L~~~~~~~v~~~~~~~~~~~~~v~~iv~~ll~~v~~~d~~F~ 59 (323)
+.-+++.|+..+.+.. =+-.++.+-...|+++++++++...+||+
T Consensus 19 ~~ii~~~l~~~L~~~~----Y~~~~~~~~~~~i~~~i~~~lk~l~~~YK 63 (114)
T 1xdx_A 19 SNIIKESIDAVLQNQQ----YSEAKVSQWTSSCLEHCIKRLTALNKPFK 63 (114)
T ss_dssp HHHHHHHHHHHHHSSC----CCHHHHHHHHHHHHHHHHHHHHHHTCSSE
T ss_pred HHHHHHHHHHhhCCCC----cCHHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence 4445555555554433 33455667778899999999988666655
No 7
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=20.44 E-value=1.7e+02 Score=21.97 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy6182 11 QSKILYQLNKYYGERVQTRKASIAKTIREVCKVVQDVLREVEVQEPRFI 59 (323)
Q Consensus 11 ~~~~~~~L~~~~~~~v~~~~~~~~~~~~~v~~iv~~ll~~v~~~d~~F~ 59 (323)
+.-+++.|+..+... .=+-.++.+-...|+++++++++...+||.
T Consensus 16 ~~ii~~~l~~~L~~~----~Y~~~~~~~~~~~i~~~i~~~lk~l~~~YK 60 (111)
T 1ygt_A 16 SKTIKEAIETTIGGN----AYQHDKVNNWTGQVVENCLTVLTKEQKPYK 60 (111)
T ss_dssp HHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHHHhhCCC----CcCHHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence 334445555544443 334455677788899999999998766655
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=19.31 E-value=1.9e+02 Score=27.19 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccCcccceecCCCceEEEEEec
Q psy6182 8 MAAQSKILYQLNKYYGERVQTRKASIAKTIREVCKVVQDVLREVEVQEPRFISSLTECNGRFEGLDVITPTEFEVVLYLN 87 (323)
Q Consensus 8 ~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~v~~iv~~ll~~v~~~d~~F~~~l~~~Gs~ye~lkv~~pdefdl~vpL~ 87 (323)
|+|++++...+.+||..- ..++++... + ++++.+|.+.++...|. ..+..-||+.-|+-.-. ...|+.|...
T Consensus 1 ~~~~~~lt~EI~dFy~~i-~PT~eE~~~-R---~~vv~~l~~ii~~~~p~--~~v~~FGS~~tgl~lp~-SDiDlvI~~~ 72 (384)
T 3hj4_A 1 MVAKREFIRGMMAHYRAS-LPPPEHSVV-I---HELQKRVLDIGMLAVNK--AHVELFGSHVSGFCTPH-SDADISLTYR 72 (384)
T ss_dssp -CHHHHHHHHHHHHHHHH-SCCTTHHHH-H---HHHHHHHHHHHHHHSTT--CEEEEESHHHHSCCCTT-CCEEEEEECT
T ss_pred CcchhHHHHHHHHHHHHh-CCCHHHHHH-H---HHHHHHHHHHHHHHCCC--cEEEEeeeccCCCCCCC-CCeeEEEecC
Confidence 468999999999999754 444444322 1 23334444444443443 22455777777764433 4577766554
No 9
>2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initi structural genomics; 2.60A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=18.20 E-value=3.1e+02 Score=21.15 Aligned_cols=44 Identities=11% Similarity=0.256 Sum_probs=29.7
Q ss_pred hhhhHHHHHHHHHHHHHHHh-hcccchhHHHHHHHHHHHHHHHHH
Q psy6182 5 SDMMAAQSKILYQLNKYYGE-RVQTRKASIAKTIREVCKVVQDVL 48 (323)
Q Consensus 5 ~~~~~~~~~~~~~L~~~~~~-~v~~~~~~~~~~~~~v~~iv~~ll 48 (323)
.|+|+++.+|-+.-..--.- .=+..+.+.+++++.|..|+.++-
T Consensus 7 kdllahrenlmdsakrarsaitddmdpadaaqavenvksiiseie 51 (141)
T 2r9i_A 7 KDLLAHRENLMDSAKRARSAITDDMDPADAAQAVENVKSIISEIE 51 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHh
Confidence 48889888887655443221 124567888899999888886653
No 10
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=15.15 E-value=7.9e+02 Score=23.84 Aligned_cols=57 Identities=18% Similarity=0.164 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHHh-cCCCC-CCCCChHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHH
Q psy6182 252 CRKKCLSILKTLRDR-HLELP-GNPVTNYHMKTLLLYECEKHPNELEWDESCLGDRINGILLQLI 314 (323)
Q Consensus 252 ~r~~cl~ilK~L~~~-~l~~~-g~~LtsyhLKTvlL~~~~~~p~~~~W~~~~L~~rl~~lL~~L~ 314 (323)
..+..++++|.-..+ .+... .+-|++|++-.++.+.|..+|+. .+++.+.+++..+.
T Consensus 206 ~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl~P~~------s~~~LL~~FF~~y~ 264 (530)
T 2hhp_A 206 VFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNA------CSAVILNRFFIILS 264 (530)
T ss_dssp HHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHSTTC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHh
Confidence 346788899988774 34311 12599999999999999999853 46777777766554
Done!