RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6182
(323 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 6e-06
Identities = 47/341 (13%), Positives = 98/341 (28%), Gaps = 104/341 (30%)
Query: 4 PSDMMAAQSKILYQLNKYYGERVQTRKASIAKTIREVCKVVQDVLREV------------ 51
P ++ K+LYQ++ + R + + I+ +Q LR +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSR-----SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 52 --EVQEPRFISSL---------TECNGRFEGLDVITPTEFEVV-----LYLNQMGEL--N 93
VQ + ++ T + L T T + L +++ L
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 94 FVD--DGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKMRSRFQTLVAQACDKCAY 151
++D LP + R +S+ E I R + + CDK
Sbjct: 310 YLDCRPQDLPREVL----TTNPRRLSIIAESI--------RDGLATWDNWKHVNCDK--L 355
Query: 152 RDSVKMIADTTEVKLRIRERYIVQITPSFKCGGIWPRSAGHWPLP----QIPWPHPNLVV 207
++ + E R+ + ++P SA +P + W
Sbjct: 356 TTIIESSLNVLEPAE-YRKMFD-----RL---SVFPPSA---HIPTILLSLIWF------ 397
Query: 208 ETKTEGCDLLSKECAAMQGKQSAMEGDAWVMSFT--DVESKLLIGGCRKKCLSILKTLRD 265
+ ++ + K S +E + + + +L + K + L
Sbjct: 398 DVIKSDVMVVVNKLH----KYSLVEKQPKESTISIPSIYLEL-----KVKLEN-EYALHR 447
Query: 266 RHLE------------LPGNPVTNY-------HMKTLLLYE 287
++ L + Y H+K + E
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Score = 39.1 bits (90), Expect = 0.002
Identities = 49/332 (14%), Positives = 97/332 (29%), Gaps = 109/332 (32%)
Query: 41 CKVVQDVLREV----EV----QEP----------------------RFISSLTECNGRF- 69
CK VQD+ + + E+ +F+ + N +F
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 70 ------EGLDVITPTEFEVVLYLNQMGELNFVDDGSLPGCAV------LKLSDGRKRSMS 117
E T +Y+ Q L + D+ V LKL R+ +
Sbjct: 95 MSPIKTEQRQPSMMTR----MYIEQRDRL-YNDNQVFAKYNVSRLQPYLKL---RQALLE 146
Query: 118 LWVE-FITASGYLSARKMRSRFQTLVAQACD----KCAYRDSVKMI----ADTTEVKLRI 168
L + G L + K + C +C + + ++ E L +
Sbjct: 147 LRPAKNVLIDGVLGSGK-----TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 169 RERYIVQITPSFKCGGIWPRSAGHWPLPQIPWPHPNLVVETKTEGCDLLSKECAAMQGKQ 228
++ + QI P++ + + E LL + +
Sbjct: 202 LQKLLYQIDPNWT------------SRSDHSSNIKLRIHSIQAELRRLLKSK----PYEN 245
Query: 229 SAMEGDAWVMSFTDVESKLLI----GGCRKKCLSILKTLRDRHLELPGNPVTNYHMKTLL 284
+ V+ +V++ C+ IL T R + + + ++ +
Sbjct: 246 CLL-----VLL--NVQNAKAWNAFNLSCK-----ILLTTRFKQVT---DFLSAATTTHIS 290
Query: 285 LYECEKHPNELEWDESCLGDRINGILLQLISC 316
L + H L DE +LL+ + C
Sbjct: 291 L---DHHSMTLTPDEV------KSLLLKYLDC 313
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 4e-04
Identities = 40/269 (14%), Positives = 73/269 (27%), Gaps = 115/269 (42%)
Query: 35 KTIREVCKVVQDVLREVEVQEPRFISSLTECNGRFEGLDVIT--PTEFEVV--------- 83
+ + K QDV + + + G F LD++ P +
Sbjct: 1633 MDLYKTSKAAQDVWNRAD-------NHFKDTYG-FSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 84 --LYLNQMGELNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKMRSRFQTL 141
Y + E DG L + K + S + F + G L T
Sbjct: 1685 RENYSAMIFETI--VDGKLKTEKIFKEINEHSTSYT----FRSEKGLL--------SATQ 1730
Query: 142 VAQ----ACDKCAYRDSVKMIADTTEVKLRIRERYIVQITPSFKCGGIWPRSAGHWPLPQ 197
Q +K A+ D ++ + ++ +F AGH L
Sbjct: 1731 FTQPALTLMEKAAFED--------------LKSKGLIPADATF---------AGH-SL-- 1764
Query: 198 IPWPHPNLVVETKTEGCDLLSKECAAMQGKQSAMEGDAWVMSFTDVESKLLIGGCRKKCL 257
G+ +A+ A VMS +
Sbjct: 1765 ----------------------------GEYAALASLADVMSIESL-------------- 1782
Query: 258 SILKTLRDR----HLELPGNPV--TNYHM 280
++ + R + +P + + +NY M
Sbjct: 1783 --VEVVFYRGMTMQVAVPRDELGRSNYGM 1809
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.8 bits (64), Expect = 2.8
Identities = 23/159 (14%), Positives = 58/159 (36%), Gaps = 25/159 (15%)
Query: 32 SIAKTIREVCKVVQDVLREVEVQEPRFISSLTECNGRFEGLDVITPTEFEVVL---YLNQ 88
+ K + E C +D + + + + +++ E + +L LN+
Sbjct: 389 DLTKELIESCVKNKD--LKSPCELAIEKTFSFGKTKKNVKINIFEKEEGKNLLGPSILNE 446
Query: 89 MGELNFVDDGSLPG----------CAVLKLSDGRKRSMSLWVEFITASGYLSARKMRSRF 138
+ +V DG++ G L G+ ++ + +I A + K+
Sbjct: 447 I----YVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIRYIDALCFKITSKLEE-- 500
Query: 139 QTLVAQACDKCAYRDSVKMIADTTEVKLRIRERYIVQIT 177
A + ++ V ++ +++ L+I + + QI
Sbjct: 501 ----AFVSNTTEFKVKVPIVRSLSDINLKIDDIALKQIM 535
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 28.4 bits (63), Expect = 4.1
Identities = 23/159 (14%), Positives = 58/159 (36%), Gaps = 25/159 (15%)
Query: 32 SIAKTIREVCKVVQDVLREVEVQEPRFISSLTECNGRFEGLDVITPTEFEVVL---YLNQ 88
+ K + E C +D + + + + +++ E + +L LN+
Sbjct: 389 DLTKELIESCVKNKD--LKSPCELAIEKTFSFGKTKKNVKINIFEKEEGKNLLGPSILNE 446
Query: 89 MGELNFVDDGSLPG----------CAVLKLSDGRKRSMSLWVEFITASGYLSARKMRSRF 138
+ +V DG++ G L G+ ++ + +I A + K+
Sbjct: 447 I----YVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIRYIDALCFKITSKLEE-- 500
Query: 139 QTLVAQACDKCAYRDSVKMIADTTEVKLRIRERYIVQIT 177
A + ++ V ++ +++ L+I + + QI
Sbjct: 501 ----AFVSNTTEFKVKVPIVRSLSDINLKIDDIALKQIM 535
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 27.6 bits (61), Expect = 7.1
Identities = 23/159 (14%), Positives = 58/159 (36%), Gaps = 25/159 (15%)
Query: 32 SIAKTIREVCKVVQDVLREVEVQEPRFISSLTECNGRFEGLDVITPTEFEVVL---YLNQ 88
+ K + E C +D + + + + +++ E + +L LN+
Sbjct: 389 DLTKELIESCVKNKD--LKSPCELAIEKTFSFGKTKKNVKINIFEKEEGKNLLGPSILNE 446
Query: 89 MGELNFVDDGSLPG----------CAVLKLSDGRKRSMSLWVEFITASGYLSARKMRSRF 138
+ +V DG++ G L G+ ++ + +I A + K+
Sbjct: 447 I----YVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIRYIDALCFKITSKLEE-- 500
Query: 139 QTLVAQACDKCAYRDSVKMIADTTEVKLRIRERYIVQIT 177
A + ++ V ++ +++ L+I + + QI
Sbjct: 501 ----AFVSNTTEFKVKVPIVRSLSDINLKIDDIALKQIM 535
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.420
Gapped
Lambda K H
0.267 0.0541 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,852,069
Number of extensions: 278332
Number of successful extensions: 418
Number of sequences better than 10.0: 1
Number of HSP's gapped: 413
Number of HSP's successfully gapped: 11
Length of query: 323
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 229
Effective length of database: 4,077,219
Effective search space: 933683151
Effective search space used: 933683151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)