RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6182
         (323 letters)



>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated
          protein VPS36 {Baker's yeast (Saccharomyces cerevisiae)
          [TaxId: 4932]}
          Length = 94

 Score = 26.3 bits (58), Expect = 1.7
 Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 7/61 (11%)

Query: 38 REVCKVVQDVLREVEVQEPRFISSLTECNGRF-----EGLDVITPTEFEVVLYLNQMGEL 92
          RE+ +      +++       I +L +    +      G  +I+P E        +   L
Sbjct: 18 REIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREA--CERFEHL 75

Query: 93 N 93
           
Sbjct: 76 G 76


>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 184

 Score = 26.5 bits (58), Expect = 3.5
 Identities = 10/56 (17%), Positives = 23/56 (41%)

Query: 226 GKQSAMEGDAWVMSFTDVESKLLIGGCRKKCLSILKTLRDRHLELPGNPVTNYHMK 281
           G  S  E +  V+   D  +   I    ++ L++  T++   + +   P+T    +
Sbjct: 58  GTISVPEHNQIVIQVWDQNAVPAIEKAIREELNLNPTVQGNVIRVTLPPLTEERRR 113


>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 142

 Score = 25.7 bits (56), Expect = 4.4
 Identities = 7/25 (28%), Positives = 9/25 (36%)

Query: 270 LPGNPVTNYHMKTLLLYECEKHPNE 294
           LP           L +Y  E HP+ 
Sbjct: 106 LPKGRQGRAMHTRLKVYAGETHPHS 130


>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus
           thermophilus [TaxId: 274]}
          Length = 139

 Score = 25.8 bits (56), Expect = 5.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 270 LPGNPVTNYHMKTLLLYECEKHPNE 294
           LP  P+     K L +Y    HP++
Sbjct: 107 LPKGPLGRRLFKRLKVYAGPDHPHQ 131


>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli
           [TaxId: 562]}
          Length = 140

 Score = 25.0 bits (54), Expect = 8.9
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 270 LPGNPVTNYHMKTLLLYECEKHPNE 294
           LP  P+     + L +Y   +H + 
Sbjct: 109 LPKGPLGRAMFRKLKVYAGNEHNHA 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,198,026
Number of extensions: 54943
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 6
Length of query: 323
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,240,546
Effective search space: 295249948
Effective search space used: 295249948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)