Query psy6184
Match_columns 156
No_of_seqs 122 out of 519
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 19:52:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zyq_A Hepatocyte growth facto 100.0 4.6E-39 1.6E-43 259.3 12.5 131 6-136 39-179 (226)
2 1x5b_A Signal transducing adap 100.0 1.6E-38 5.6E-43 245.3 13.7 108 6-113 46-154 (163)
3 3ldz_A STAM-1, signal transduc 100.0 2.2E-38 7.6E-43 238.9 12.2 104 6-110 36-140 (140)
4 1juq_A ADP-ribosylation factor 100.0 1.3E-37 4.4E-42 242.0 12.7 116 7-125 45-169 (171)
5 1mhq_A ADP-ribosylation factor 100.0 2.6E-37 8.8E-42 235.3 11.8 104 7-113 33-142 (148)
6 1elk_A Target of MYB1; superhe 100.0 1.4E-36 4.7E-41 233.0 12.5 106 6-111 47-157 (157)
7 1dvp_A HRS, hepatocyte growth 100.0 5.6E-36 1.9E-40 239.7 14.6 131 6-136 36-176 (220)
8 3g2s_A C-terminal fragment of 100.0 3.5E-35 1.2E-39 223.9 11.7 99 7-108 43-147 (149)
9 3rru_A TOM1L1 protein; structu 100.0 3.9E-34 1.3E-38 218.8 9.1 101 6-106 47-152 (152)
10 1sz9_A PCF11 protein; RNA poly 98.5 1.1E-06 3.8E-11 65.8 9.5 80 9-90 40-119 (144)
11 1vdy_A Hypothetical protein (R 97.5 0.00027 9.2E-09 52.8 6.8 72 10-83 47-128 (140)
12 4flb_A Regulation of nuclear P 97.1 0.0011 3.8E-08 47.9 6.3 77 9-86 37-113 (132)
13 3d9j_A RNA-binding protein 16; 97.0 0.0016 5.4E-08 48.5 6.7 77 9-85 39-119 (145)
14 1inz_A EPS15-interacting porte 96.7 0.0079 2.7E-07 45.1 8.3 76 9-84 56-139 (148)
15 1xgw_A Epsin 4; ENTH, enthopro 96.7 0.012 4E-07 45.4 9.4 76 8-85 66-152 (176)
16 1eyh_A Epsin; superhelix of he 96.2 0.03 1E-06 41.7 8.7 74 10-85 39-122 (144)
17 3onk_A Epsin-3, ENT3; helix, p 96.2 0.016 5.3E-07 43.6 7.0 74 10-85 45-129 (150)
18 4fu3_A Regulation of nuclear P 96.1 0.0038 1.3E-07 45.1 3.1 73 9-86 36-114 (135)
19 2km4_A Regulator of TY1 transp 94.5 0.15 5.2E-06 37.3 7.6 74 8-86 34-116 (142)
20 2qk2_A LP04448P; mini spindles 93.9 0.57 2E-05 35.6 10.0 74 10-86 54-128 (242)
21 3clj_A Protein NRD1; CTD-inter 93.1 0.37 1.3E-05 36.3 7.4 78 11-89 40-135 (157)
22 2qk2_A LP04448P; mini spindles 92.7 1.3 4.3E-05 33.7 10.3 78 9-89 130-209 (242)
23 2qk1_A Protein STU2; STU2P, XM 90.5 3.5 0.00012 32.1 10.9 75 11-88 59-136 (249)
24 4db6_A Armadillo repeat protei 90.3 1.4 4.9E-05 32.0 8.0 70 13-84 139-208 (210)
25 2qk1_A Protein STU2; STU2P, XM 88.6 4.1 0.00014 31.7 9.9 78 10-89 144-224 (249)
26 4ffb_C Protein STU2; tubulin f 88.2 2.5 8.7E-05 32.9 8.5 34 14-47 57-90 (278)
27 4ffb_C Protein STU2; tubulin f 87.6 1.9 6.6E-05 33.6 7.4 75 10-88 137-215 (278)
28 4hxt_A De novo protein OR329; 87.0 3.4 0.00012 30.4 8.2 74 13-88 171-244 (252)
29 3b2a_A TON_1937, putative unch 86.4 4.4 0.00015 32.8 8.9 77 10-88 31-107 (265)
30 4hxt_A De novo protein OR329; 86.0 3.5 0.00012 30.3 7.8 71 13-85 3-73 (252)
31 3zyl_A Phosphatidylinositol-bi 85.7 1.3 4.4E-05 35.9 5.5 45 7-51 60-104 (271)
32 4db8_A Armadillo-repeat protei 85.6 1.8 6.3E-05 32.3 6.1 76 8-85 8-83 (252)
33 3zym_A Phosphatidylinositol-bi 85.1 1.6 5.4E-05 36.0 5.8 45 7-51 60-104 (310)
34 3dad_A FH1/FH2 domain-containi 84.7 3.8 0.00013 34.4 8.1 93 13-108 203-307 (339)
35 1xqr_A HSPBP1 protein; armadil 84.0 3.4 0.00012 33.3 7.3 72 13-85 82-154 (296)
36 1hx8_A Synapse-enriched clathr 83.9 1.9 6.5E-05 35.1 5.8 46 8-53 56-101 (299)
37 1ibr_B P95, importin beta-1 su 81.7 8.7 0.0003 30.8 9.0 87 13-102 367-456 (462)
38 3nmw_A APC variant protein; AR 81.6 6.5 0.00022 32.4 8.3 73 13-85 128-200 (354)
39 1xqr_A HSPBP1 protein; armadil 81.4 4.9 0.00017 32.3 7.4 72 13-86 168-239 (296)
40 4db6_A Armadillo repeat protei 80.9 6.3 0.00021 28.4 7.2 71 13-85 97-167 (210)
41 2jdq_A Importin alpha-1 subuni 80.9 8.7 0.0003 30.9 8.7 73 12-85 107-179 (450)
42 4b8j_A Importin subunit alpha- 80.6 3.8 0.00013 34.4 6.6 75 11-85 73-147 (528)
43 4db8_A Armadillo-repeat protei 79.0 8.2 0.00028 28.6 7.5 70 13-84 55-124 (252)
44 2jdq_A Importin alpha-1 subuni 78.9 8.8 0.0003 30.8 8.1 73 13-86 319-391 (450)
45 3tt9_A Plakophilin-2; cell adh 78.5 11 0.00038 29.4 8.3 71 13-84 53-123 (233)
46 2bpt_A Importin beta-1 subunit 78.2 12 0.00042 32.8 9.4 76 12-89 639-715 (861)
47 3l6x_A Catenin delta-1; cateni 76.1 6.5 0.00022 35.0 7.1 73 13-85 91-163 (584)
48 1jdh_A Beta-catenin; beta-cate 74.5 18 0.0006 29.8 9.0 71 13-85 102-172 (529)
49 1b3u_A Protein (protein phosph 74.4 17 0.00058 30.1 8.9 65 13-82 520-584 (588)
50 2of3_A ZYG-9; multifunctional 74.0 14 0.00047 29.7 7.9 71 9-86 164-237 (266)
51 2z6h_A Catenin beta-1, beta-ca 72.7 19 0.00063 31.3 9.0 71 13-84 15-85 (644)
52 1jdh_A Beta-catenin; beta-cate 72.6 19 0.00064 29.6 8.7 73 11-84 16-88 (529)
53 3nmz_A APC variant protein; pr 72.5 14 0.00048 31.6 8.1 73 13-85 244-316 (458)
54 2z6g_A B-catenin; FULL-length, 71.4 22 0.00075 32.1 9.4 73 11-84 149-221 (780)
55 4f52_E Glomulin; cullin-ring E 70.8 8.8 0.0003 34.3 6.6 124 14-137 319-462 (596)
56 2o71_A Death domain-containing 70.7 5.2 0.00018 28.2 4.2 70 36-108 27-97 (115)
57 2vgl_A Adaptor protein complex 70.6 16 0.00055 32.1 8.2 34 11-44 328-361 (621)
58 4b8j_A Importin subunit alpha- 70.6 12 0.0004 31.3 7.0 71 14-85 373-443 (528)
59 4fdd_A Transportin-1; heat rep 70.6 32 0.0011 30.7 10.3 75 12-89 359-433 (852)
60 3grl_A General vesicular trans 70.5 22 0.00076 32.3 9.1 95 12-107 122-222 (651)
61 2of5_A Death domain-containing 70.4 6 0.0002 27.8 4.4 70 36-108 27-97 (114)
62 4fdd_A Transportin-1; heat rep 70.0 38 0.0013 30.2 10.6 74 13-89 630-703 (852)
63 1xm9_A Plakophilin 1; armadill 69.2 19 0.00064 30.1 8.0 72 13-85 45-116 (457)
64 3ltm_A Alpha-REP4; protein eng 69.0 14 0.00046 26.8 6.4 60 11-83 111-170 (211)
65 1ibr_B P95, importin beta-1 su 68.3 25 0.00087 28.0 8.4 72 11-84 127-202 (462)
66 1qgr_A Protein (importin beta 68.1 43 0.0015 29.3 10.4 74 13-89 367-441 (876)
67 1w63_A Adapter-related protein 68.0 17 0.00058 31.8 7.7 93 12-106 313-435 (618)
68 2z6g_A B-catenin; FULL-length, 67.8 22 0.00076 32.0 8.6 72 12-85 234-305 (780)
69 1wa5_B Importin alpha subunit; 67.6 13 0.00046 31.1 6.8 73 14-87 385-459 (530)
70 1wa5_B Importin alpha subunit; 66.9 9.7 0.00033 32.0 5.8 74 12-85 87-160 (530)
71 2z6h_A Catenin beta-1, beta-ca 66.4 26 0.00089 30.3 8.6 71 13-85 99-169 (644)
72 1qgr_A Protein (importin beta 66.1 42 0.0014 29.3 10.0 90 11-104 648-741 (876)
73 3tpo_A Importin subunit alpha- 65.4 22 0.00074 30.1 7.7 72 13-84 77-148 (529)
74 3dad_A FH1/FH2 domain-containi 65.3 23 0.00079 29.6 7.6 74 11-86 159-232 (339)
75 3ul1_B Importin subunit alpha- 65.0 62 0.0021 27.2 10.5 70 13-83 359-428 (510)
76 1fad_A Protein (FADD protein); 65.0 5.3 0.00018 26.8 3.1 69 35-106 16-85 (99)
77 1b3u_A Protein (protein phosph 63.5 46 0.0016 27.4 9.3 74 11-89 440-513 (588)
78 3ezq_B Protein FADD; apoptosis 62.2 10 0.00035 26.9 4.3 68 36-107 9-78 (122)
79 3ltj_A Alpharep-4; protein eng 62.2 31 0.001 24.6 7.1 60 11-83 106-165 (201)
80 3tt9_A Plakophilin-2; cell adh 60.0 35 0.0012 26.5 7.4 71 13-85 9-81 (233)
81 3ltj_A Alpharep-4; protein eng 59.8 40 0.0014 23.9 7.4 25 12-36 45-69 (201)
82 3ltm_A Alpha-REP4; protein eng 58.8 42 0.0014 24.0 7.4 25 12-36 50-74 (211)
83 1te4_A Conserved protein MTH18 58.8 37 0.0013 22.8 6.7 24 14-37 44-67 (131)
84 2vgl_B AP-2 complex subunit be 58.6 51 0.0018 28.3 9.0 70 11-85 120-189 (591)
85 1wjt_A Transcription elongatio 56.3 46 0.0016 22.8 6.9 23 67-89 66-88 (103)
86 3tpo_A Importin subunit alpha- 55.1 94 0.0032 26.1 10.5 71 13-84 378-448 (529)
87 2of3_A ZYG-9; multifunctional 54.4 54 0.0019 26.1 7.8 68 18-87 93-163 (266)
88 1xm9_A Plakophilin 1; armadill 54.2 36 0.0012 28.3 7.1 70 14-85 4-73 (457)
89 3ul1_B Importin subunit alpha- 53.2 46 0.0016 28.0 7.7 70 13-83 58-128 (510)
90 1wxp_A THO complex subunit 1; 51.2 20 0.00067 24.6 4.2 36 69-107 53-89 (110)
91 1u6g_C TIP120 protein, CAND1; 49.0 82 0.0028 29.3 9.2 72 14-87 436-508 (1230)
92 2vgl_A Adaptor protein complex 48.5 88 0.003 27.3 8.9 67 8-84 517-588 (621)
93 1hu3_A EIF4GII; heat repeat, t 48.0 79 0.0027 24.6 7.8 70 15-88 169-242 (260)
94 2yqf_A Ankyrin-1; death domain 46.6 25 0.00086 24.0 4.2 37 69-108 54-91 (111)
95 1u6g_C TIP120 protein, CAND1; 46.5 92 0.0031 29.0 9.1 91 10-104 131-224 (1230)
96 2p6v_A Transcription initiatio 43.3 36 0.0012 24.1 4.5 32 54-85 23-55 (114)
97 3b2a_A TON_1937, putative unch 43.0 43 0.0015 27.0 5.5 69 10-83 148-216 (265)
98 1w63_A Adapter-related protein 42.0 1.4E+02 0.0047 25.9 9.1 70 8-84 505-576 (618)
99 1oyz_A Hypothetical protein YI 41.0 71 0.0024 23.9 6.4 57 10-81 190-246 (280)
100 2bpt_A Importin beta-1 subunit 39.0 1.9E+02 0.0066 25.0 10.3 75 12-88 411-485 (861)
101 3l6x_A Catenin delta-1; cateni 38.2 1E+02 0.0035 27.2 7.7 71 13-85 49-119 (584)
102 2vgl_B AP-2 complex subunit be 37.1 99 0.0034 26.5 7.4 69 9-83 461-530 (591)
103 3now_A UNC-45 protein, SD10334 36.6 93 0.0032 28.7 7.4 69 13-82 709-779 (810)
104 2gf5_A FADD protein; death dom 36.4 29 0.00099 26.0 3.4 34 70-106 135-169 (191)
105 2of5_H Leucine-rich repeat and 35.2 11 0.00038 26.3 0.8 72 34-107 14-86 (118)
106 4gns_B Protein CSD3, chitin bi 32.9 1.4E+02 0.0048 27.4 7.8 80 10-90 629-743 (754)
107 2h7b_A Core-binding factor, ML 31.0 38 0.0013 23.7 2.9 31 54-85 10-40 (105)
108 3nmw_A APC variant protein; AR 30.5 2.2E+02 0.0074 23.0 8.3 72 13-85 171-247 (354)
109 4gmo_A Putative uncharacterize 30.0 1E+02 0.0035 27.2 6.3 69 15-86 37-106 (684)
110 3e3v_A Regulatory protein RECX 29.0 1.5E+02 0.0052 21.7 6.3 100 10-109 48-153 (177)
111 1oyz_A Hypothetical protein YI 28.8 1.8E+02 0.0061 21.6 7.3 23 12-34 128-150 (280)
112 2li3_A Potassium channel toxin 28.4 20 0.00067 19.3 0.8 9 36-44 19-27 (30)
113 2zkr_o 60S ribosomal protein L 28.1 32 0.0011 26.4 2.4 42 16-58 13-54 (188)
114 3now_A UNC-45 protein, SD10334 27.4 2.4E+02 0.0081 26.0 8.4 73 12-88 290-362 (810)
115 3opb_A SWI5-dependent HO expre 27.3 2.6E+02 0.009 25.8 8.7 89 13-103 458-555 (778)
116 1te4_A Conserved protein MTH18 26.9 1.4E+02 0.0048 19.7 7.3 36 1-36 1-36 (131)
117 1w9c_A CRM1 protein, exportin 26.8 2.6E+02 0.009 22.9 9.5 75 11-85 166-248 (321)
118 3nmz_A APC variant protein; pr 26.6 2.9E+02 0.0099 23.3 8.5 72 13-85 287-363 (458)
119 2x19_B Importin-13; nuclear tr 25.9 1.5E+02 0.005 26.6 6.7 48 14-65 531-578 (963)
120 1wix_A HOOK homolog 1, RSGI RU 25.5 2E+02 0.0068 21.0 7.5 55 24-90 108-162 (164)
121 3tjz_B Coatomer subunit gamma; 25.1 2.9E+02 0.0098 22.7 8.8 68 9-83 136-203 (355)
122 2x1g_F Cadmus; transport prote 24.4 1.6E+02 0.0054 26.6 6.6 73 10-87 544-617 (971)
123 1t0f_C Protein E, transposon T 23.0 41 0.0014 20.6 1.7 14 98-111 33-46 (54)
124 3m1i_C Exportin-1; heat repeat 22.4 3.1E+02 0.011 25.1 8.3 38 11-48 539-576 (1049)
125 1ug2_A 2610100B20RIK gene prod 22.1 1.9E+02 0.0066 19.7 5.3 35 57-91 58-92 (95)
126 1pqv_S STP-alpha, transcriptio 21.7 1.6E+02 0.0053 23.8 5.5 65 14-89 6-78 (309)
127 3opb_A SWI5-dependent HO expre 21.3 4.8E+02 0.017 24.0 9.3 72 14-85 656-728 (778)
No 1
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=100.00 E-value=4.6e-39 Score=259.34 Aligned_cols=131 Identities=44% Similarity=0.680 Sum_probs=121.9
Q ss_pred CCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 6 WTIVPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 6 ~~~~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
.+++|+||+++|+|||+++||++|++||+|||+||||||.+||.||++++|+++|++++++.++.+||+||+++|+.|++
T Consensus 39 ~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 39 GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HhhCCCCCcchH-HHHHhhhCCCCCCC-CCCCCCCChhh--------hhhhhhccccccCC
Q psy6184 86 AFRNSPKYRAVP-TKSWMTDKGFKNPS-KSSDSLGLELQ--------IFRICHIHFSEIKG 136 (156)
Q Consensus 86 ~F~~~~~l~~i~-~Y~~Lk~~Gi~FP~-~~~~a~f~~~~--------~~~~~~~~~~~~~~ 136 (156)
+|+++|+|++|. +|++|+++||+||+ +++++||+.+. .|+.|...|+.+..
T Consensus 119 ~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~~~~damf~~~~~p~W~~~~~C~~C~~~F~~~~R 179 (226)
T 3zyq_A 119 AFRNEPKYKVVQDTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRVQFGVMTR 179 (226)
T ss_dssp HTTTCGGGHHHHHHHHHHHHHTCCCCCCCGGGGCCCCCCCCCCCCCSBCTTTCCBCBTTBC
T ss_pred HhCCCcchHHHHHHHHHHHhcCCCcccchhHHHhhhcccccccccCCCCcCcCCCCCcccc
Confidence 999999999999 99999999999999 67888886553 67888888886643
No 2
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=100.00 E-value=1.6e-38 Score=245.27 Aligned_cols=108 Identities=27% Similarity=0.572 Sum_probs=103.9
Q ss_pred CCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 6 WTIVPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 6 ~~~~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
.+++|+||+++|+|||+|+||++|++||+|||+||||||.+||.||++++|+++|+++++..++..||+||+++|+.|++
T Consensus 46 ~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 46 TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999877889999999999999999
Q ss_pred HhhCCCCCcchH-HHHHhhhCCCCCCCCC
Q psy6184 86 AFRNSPKYRAVP-TKSWMTDKGFKNPSKS 113 (156)
Q Consensus 86 ~F~~~~~l~~i~-~Y~~Lk~~Gi~FP~~~ 113 (156)
+|+++|+|.+|. +|+.||++||+||+.+
T Consensus 126 ~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~~ 154 (163)
T 1x5b_A 126 EFQKDPQFSLISATIKSMKEEGITFPPAG 154 (163)
T ss_dssp HTTTCSTTHHHHHHHHHHHTTTCCCCCCS
T ss_pred HhcCCcccHHHHHHHHHHHHcCCCCCCCC
Confidence 999999999999 9999999999999844
No 3
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=100.00 E-value=2.2e-38 Score=238.94 Aligned_cols=104 Identities=27% Similarity=0.589 Sum_probs=100.5
Q ss_pred CCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 6 WTIVPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 6 ~~~~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
.+++|+||+++|+|||+|+||++|++||+|||+||||||.+||.||++++|+++|++++++ ++..|++||+++|+.|++
T Consensus 36 ~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 36 SRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999999999999964 688999999999999999
Q ss_pred HhhCCCCCcchH-HHHHhhhCCCCCC
Q psy6184 86 AFRNSPKYRAVP-TKSWMTDKGFKNP 110 (156)
Q Consensus 86 ~F~~~~~l~~i~-~Y~~Lk~~Gi~FP 110 (156)
+|+++|+|.+|. +|++||++||+||
T Consensus 115 ~f~~~~~l~~i~~~Y~~Lk~~G~~FP 140 (140)
T 3ldz_A 115 EFKNDPQLSLISAMIKNLKEQGVTFP 140 (140)
T ss_dssp HHTTCGGGTHHHHHHHHHHHTTCCCC
T ss_pred HhCCCCCchHHHHHHHHHHHccCcCc
Confidence 999999999999 9999999999999
No 4
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=100.00 E-value=1.3e-37 Score=241.99 Aligned_cols=116 Identities=28% Similarity=0.452 Sum_probs=102.0
Q ss_pred CCChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhcc-----CCcHHHHHHHHHHHH
Q psy6184 7 TIVPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRG-----TQHEEVKAKILELIQ 81 (156)
Q Consensus 7 ~~~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~-----~~~~~Vk~kil~li~ 81 (156)
+++|++|+++|+|||+|+||+||++||+|||+||||||.+||.||++++|+++|+++++. .++..||+||+++|+
T Consensus 45 ~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 124 (171)
T 1juq_A 45 LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLY 124 (171)
T ss_dssp TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999963 468999999999999
Q ss_pred HHHHHhhCCCCCcchH-HHHHhhhCCCCC--CC-CCCCCCCChhhhhh
Q psy6184 82 AWAHAFRNSPKYRAVP-TKSWMTDKGFKN--PS-KSSDSLGLELQIFR 125 (156)
Q Consensus 82 ~Wa~~F~~~~~l~~i~-~Y~~Lk~~Gi~F--P~-~~~~a~f~~~~~~~ 125 (156)
.|+++|+++|. |. +|+.||++||.| |. +++++||+|+...+
T Consensus 125 ~W~~~f~~~~~---i~~~y~~Lk~~G~~f~~P~~~~~~~~f~~p~~~~ 169 (171)
T 1juq_A 125 SWTMALPEEAK---IKDAYHMLKRQGIVQSDPPIPVDRTLIPSPPPRP 169 (171)
T ss_dssp HHHHHCTTCHH---HHHHHHHHHHTTSCSSCCCBCCCTTCC-------
T ss_pred HHHHHcCCCcH---HHHHHHHHHHCCCCCCCCCCCccccCCCCCCCCC
Confidence 99999998765 88 999999999998 76 56789999986654
No 5
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=2.6e-37 Score=235.33 Aligned_cols=104 Identities=24% Similarity=0.468 Sum_probs=98.4
Q ss_pred CCChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhcc-----CCcHHHHHHHHHHHH
Q psy6184 7 TIVPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRG-----TQHEEVKAKILELIQ 81 (156)
Q Consensus 7 ~~~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~-----~~~~~Vk~kil~li~ 81 (156)
+++|++|+++|+|||+|+||++|++||+|||+||||||.+||.||++++|+++|++++++ .++..||+||+++|+
T Consensus 33 ~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (148)
T 1mhq_A 33 PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILF 112 (148)
T ss_dssp SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999974 368999999999999
Q ss_pred HHHHHhhCCCCCcchH-HHHHhhhCCCCCCCCC
Q psy6184 82 AWAHAFRNSPKYRAVP-TKSWMTDKGFKNPSKS 113 (156)
Q Consensus 82 ~Wa~~F~~~~~l~~i~-~Y~~Lk~~Gi~FP~~~ 113 (156)
.|+.+|+++|+ |. +|++|+++||.||+.+
T Consensus 113 ~W~~~f~~~p~---i~~~y~~Lk~~G~~Fp~~~ 142 (148)
T 1mhq_A 113 SWTVWFPEDIK---IRDAYQMLKKQGIIKQDPK 142 (148)
T ss_dssp HHHHHCTTCHH---HHHHHHHHHHTTSSCSCCC
T ss_pred HHHHHcCCCch---HHHHHHHHHHcCCCCCCCC
Confidence 99999999887 88 9999999999999843
No 6
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=1.4e-36 Score=233.03 Aligned_cols=106 Identities=39% Similarity=0.592 Sum_probs=99.9
Q ss_pred CCCChHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHH-HHHhhcc--CCcHHHHHHHHHHHH
Q psy6184 6 WTIVPSHALASIKKKLT-NSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQ-MKELVRG--TQHEEVKAKILELIQ 81 (156)
Q Consensus 6 ~~~~~k~AvraL~KrL~-~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~-l~kl~~~--~~~~~Vk~kil~li~ 81 (156)
.+++|+||+++|+|||+ ++||++|++||+|||+||||||.+||.||++++|+++ |++++.. .++..||+||+++|+
T Consensus 47 ~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~ 126 (157)
T 1elk_A 47 TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQ 126 (157)
T ss_dssp SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 35799999999999998 5999999999999999999999999999999999999 8999853 467899999999999
Q ss_pred HHHHHhhCCCCCcchH-HHHHhhhCCCCCCC
Q psy6184 82 AWAHAFRNSPKYRAVP-TKSWMTDKGFKNPS 111 (156)
Q Consensus 82 ~Wa~~F~~~~~l~~i~-~Y~~Lk~~Gi~FP~ 111 (156)
.|+++|+++|+|.+|. +|++|+++||+||.
T Consensus 127 ~W~~~f~~~p~l~~i~~~Y~~Lk~~G~~FP~ 157 (157)
T 1elk_A 127 SWADAFRSSPDLTGVVTIYEDLRRKGLEFPM 157 (157)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999 99999999999994
No 7
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=100.00 E-value=5.6e-36 Score=239.72 Aligned_cols=131 Identities=40% Similarity=0.660 Sum_probs=117.9
Q ss_pred CCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 6 WTIVPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 6 ~~~~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
.+++|+||+++|+|||+++||++|++||+|||+||+|||.+||.||++++|+++|++++++.++.+|++|++++|+.|++
T Consensus 36 ~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 36 KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999878889999999999999999
Q ss_pred HhhCCCCCcchH-HHHHhhhCCCCCCC-CCCCCCCChh--------hhhhhhhccccccCC
Q psy6184 86 AFRNSPKYRAVP-TKSWMTDKGFKNPS-KSSDSLGLEL--------QIFRICHIHFSEIKG 136 (156)
Q Consensus 86 ~F~~~~~l~~i~-~Y~~Lk~~Gi~FP~-~~~~a~f~~~--------~~~~~~~~~~~~~~~ 136 (156)
+|+++|+|++|. +|+.|+++|+.||. .+.++||+.+ ..|+.|..+|+.+..
T Consensus 116 ~f~~~~~~~~i~~~y~~Lk~~G~~FP~~~e~~a~f~~~~~~~W~~~~~C~~C~~~F~~~~r 176 (220)
T 1dvp_A 116 AFRSSDKYQAIKDTMTILKAKGHTFPELREADAMFTADTAPNWADGRVCHRCRVEFTFTNR 176 (220)
T ss_dssp HTTTCSSCCHHHHHHHHHHHTTCCCCCCCC---CCCCSCCCCCCCCSBCTTTCCBCCSSSC
T ss_pred HhccchHHHHHHHHHHHHhhcCccccccccccccccccccccCCCCCccCCCCCccCCccc
Confidence 999999999999 99999999999998 5667787532 468888888876643
No 8
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=100.00 E-value=3.5e-35 Score=223.92 Aligned_cols=99 Identities=30% Similarity=0.525 Sum_probs=94.3
Q ss_pred CCChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhcc-----CCcHHHHHHHHHHHH
Q psy6184 7 TIVPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRG-----TQHEEVKAKILELIQ 81 (156)
Q Consensus 7 ~~~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~-----~~~~~Vk~kil~li~ 81 (156)
+++|++|+++|+|||+|+||++|++||+|||+||||||.+||.||++++|+++|++++++ .++..||+||+++|+
T Consensus 43 ~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 122 (149)
T 3g2s_A 43 FEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLY 122 (149)
T ss_dssp SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999974 478999999999999
Q ss_pred HHHHHhhCCCCCcchH-HHHHhhhCCCC
Q psy6184 82 AWAHAFRNSPKYRAVP-TKSWMTDKGFK 108 (156)
Q Consensus 82 ~Wa~~F~~~~~l~~i~-~Y~~Lk~~Gi~ 108 (156)
.|+.+|+++|+ |. +|++||++||.
T Consensus 123 ~W~~~f~~~p~---i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 123 SWTVGLPEEVK---IAEAYQMLKKQGIV 147 (149)
T ss_dssp HHHHHCTTCHH---HHHHHHHHHHTTCC
T ss_pred HHHHHhCCCch---HHHHHHHHHHCcCc
Confidence 99999998876 88 99999999985
No 9
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=218.81 Aligned_cols=101 Identities=22% Similarity=0.444 Sum_probs=94.4
Q ss_pred CCCChHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHH-HHHhhcc--CCcHHHHHHHHHHHH
Q psy6184 6 WTIVPSHALASIKKKLTN-SNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQ-MKELVRG--TQHEEVKAKILELIQ 81 (156)
Q Consensus 6 ~~~~~k~AvraL~KrL~~-~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~-l~kl~~~--~~~~~Vk~kil~li~ 81 (156)
.+++||||+++|+|||++ +||++|++||+|||+||||||.+||.||++++|+++ |+++++. .++..||+||+++|+
T Consensus 47 ~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~ 126 (152)
T 3rru_A 47 TQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIK 126 (152)
T ss_dssp STTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 357999999999999985 699999999999999999999999999999999998 8999864 467899999999999
Q ss_pred HHHHHhhCCCCCcchH-HHHHhhhCC
Q psy6184 82 AWAHAFRNSPKYRAVP-TKSWMTDKG 106 (156)
Q Consensus 82 ~Wa~~F~~~~~l~~i~-~Y~~Lk~~G 106 (156)
+|+.+|+++|+|.+|. +|++|+++|
T Consensus 127 ~Wa~~F~~~p~l~~i~~~Y~~Lk~~G 152 (152)
T 3rru_A 127 TWSQGFPGGVDVSEVKEVYLDLVKKG 152 (152)
T ss_dssp HHHTCCSSSCCCHHHHHHHHHHHHC-
T ss_pred HHHHHhCCCCcchHHHHHHHHHHHCc
Confidence 9999999999999999 999999998
No 10
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=98.45 E-value=1.1e-06 Score=65.84 Aligned_cols=80 Identities=16% Similarity=0.300 Sum_probs=64.5
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhh
Q psy6184 9 VPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFR 88 (156)
Q Consensus 9 ~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~ 88 (156)
.+++.+.+|.++|...+|..-+.+|.|+|..++|||.+|...++.. ..+.+..... ..+..+|.|+..|+..|.+.|.
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~-l~~~f~~~~~-~~d~~~r~k~~rL~~~W~~~~~ 117 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRN-LFNLYKRTYL-LVDNTTRTKLINMFKLWLNPND 117 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTT-HHHHHHHHHH-TSCHHHHHHHHHHHHHHTSGGG
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHH-HHHHHHHHHH-hCCHHHHHHHHHHHHHHhCccc
Confidence 5789999999999999999999999999999999999997666542 2222222222 3578999999999999999987
Q ss_pred CC
Q psy6184 89 NS 90 (156)
Q Consensus 89 ~~ 90 (156)
+.
T Consensus 118 ~~ 119 (144)
T 1sz9_A 118 TG 119 (144)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 11
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=97.48 E-value=0.00027 Score=52.80 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhc--cC--------CcHHHHHHHHHH
Q psy6184 10 PSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVR--GT--------QHEEVKAKILEL 79 (156)
Q Consensus 10 ~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~--~~--------~~~~Vk~kil~l 79 (156)
..+.+..|-|||+++++++.+-||.||+.|++|+++.|..++-..-. .|..+.. .. ....||+++.++
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~--~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSV--AVRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTH--HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHH--HHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998755432 3333332 11 127788888888
Q ss_pred HHHH
Q psy6184 80 IQAW 83 (156)
Q Consensus 80 i~~W 83 (156)
+...
T Consensus 125 ~~ll 128 (140)
T 1vdy_A 125 ISAI 128 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 12
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=97.09 E-value=0.0011 Score=47.93 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH
Q psy6184 9 VPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHA 86 (156)
Q Consensus 9 ~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~ 86 (156)
.+++.+.++.++|+...++.-+..|.|++..++||+.+...++ .+.|-..|..++..-.+++.++++..++..|.+.
T Consensus 37 ~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f-~~~f~~~l~~~~~~~~~~~~~~kl~~ll~iW~~r 113 (132)
T 4flb_A 37 HHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIF-RESFADVLPEAAALVKDPSVSKSVERIFKIWEDR 113 (132)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHH-HHHHHTTHHHHHHTTCSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 4788899999999988899999999999999999987643322 1233333444444334678899999999999973
No 13
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=97.03 E-value=0.0016 Score=48.45 Aligned_cols=77 Identities=18% Similarity=0.339 Sum_probs=60.4
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhc--cHHHHHHHHHhhcc--CCcHHHHHHHHHHHHHHH
Q psy6184 9 VPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVG--TKAFMEQMKELVRG--TQHEEVKAKILELIQAWA 84 (156)
Q Consensus 9 ~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIa--sk~Fl~~l~kl~~~--~~~~~Vk~kil~li~~Wa 84 (156)
.++..+..+-++|+...|.--+-+|.|+|..++|++.....+.. ...|...|.+++.. ..+.++|.++..|+..|.
T Consensus 39 ~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~~~~r~kl~rLl~iW~ 118 (145)
T 3d9j_A 39 FYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQ 118 (145)
T ss_dssp GHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 46788999999998888899999999999999999996432111 14577777776542 345899999999999998
Q ss_pred H
Q psy6184 85 H 85 (156)
Q Consensus 85 ~ 85 (156)
+
T Consensus 119 ~ 119 (145)
T 3d9j_A 119 K 119 (145)
T ss_dssp H
T ss_pred C
Confidence 5
No 14
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=96.71 E-value=0.0079 Score=45.07 Aligned_cols=76 Identities=20% Similarity=0.275 Sum_probs=55.5
Q ss_pred ChHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHccchhHHhhhccHHH-HHHHHH--hhc-c--CCcHHHHHHHHHHH
Q psy6184 9 VPSHALASIKKKLTN--SNPHIVLYALLVLESCVKNCGNLIHDEVGTKAF-MEQMKE--LVR-G--TQHEEVKAKILELI 80 (156)
Q Consensus 9 ~~k~AvraL~KrL~~--~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~F-l~~l~k--l~~-~--~~~~~Vk~kil~li 80 (156)
...+.+..|.|||.. ++...++-||.|||.|++|+.+.|-.++.+.-+ +..|.. .+. + .....||+|+-.++
T Consensus 56 ~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~ 135 (148)
T 1inz_A 56 AFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLV 135 (148)
T ss_dssp HHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHH
Confidence 346789999999975 589999999999999999999988776654433 333333 122 1 13468999998888
Q ss_pred HHHH
Q psy6184 81 QAWA 84 (156)
Q Consensus 81 ~~Wa 84 (156)
....
T Consensus 136 ~LL~ 139 (148)
T 1inz_A 136 ALLR 139 (148)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7543
No 15
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=96.71 E-value=0.012 Score=45.41 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhc-----c-C--CcHHHHHHH
Q psy6184 8 IVPSHALASIKKKL-T--NSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVR-----G-T--QHEEVKAKI 76 (156)
Q Consensus 8 ~~~k~AvraL~KrL-~--~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~-----~-~--~~~~Vk~ki 76 (156)
....+.+..|.||| + .++...++-||.|||.|++|+.+.|-.++ ++.+..|..|-. . . ....||+|+
T Consensus 66 ~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~vv~~~--r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kA 143 (176)
T 1xgw_A 66 EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSA--REHIYDLRSLENYHFVDEHGKDQGINIRQKV 143 (176)
T ss_dssp TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHHHHHHH--HHTHHHHHGGGGCCCBCTTSCBCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHHHHHHH--HHhHHHHHhhccCeeECCCCCChHHHHHHHH
Confidence 45578899999997 4 47999999999999999999999988877 555555554432 1 1 226699999
Q ss_pred HHHHHHHHH
Q psy6184 77 LELIQAWAH 85 (156)
Q Consensus 77 l~li~~Wa~ 85 (156)
-+++....+
T Consensus 144 k~i~~LL~D 152 (176)
T 1xgw_A 144 KELVEFAQD 152 (176)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHCC
Confidence 888876543
No 16
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=96.19 E-value=0.03 Score=41.65 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhh-----c-cC--CcHHHHHHHHHH
Q psy6184 10 PSHALASIKKKLTN--SNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELV-----R-GT--QHEEVKAKILEL 79 (156)
Q Consensus 10 ~k~AvraL~KrL~~--~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~-----~-~~--~~~~Vk~kil~l 79 (156)
..+.+..|.|||.. ++...++-||.|||.|++|+.+.|-.++.+.- ..|..|- . +. ....||+|+-.+
T Consensus 39 ~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~~~~~~~--~~i~~L~~F~y~d~~g~D~G~~VR~kak~l 116 (144)
T 1eyh_A 39 FSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENM--YAVQTLKDFQYVDRDGKDQGVNVREKAKQL 116 (144)
T ss_dssp HHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHHTH--HHHHGGGGCCCBCTTSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHHHHHHhh--HHHhhhccceeeCCCccchHHHHHHHHHHH
Confidence 45789999999976 48999999999999999999998777654332 2222221 1 11 236789998888
Q ss_pred HHHHHH
Q psy6184 80 IQAWAH 85 (156)
Q Consensus 80 i~~Wa~ 85 (156)
+....+
T Consensus 117 ~~Ll~D 122 (144)
T 1eyh_A 117 VALLRD 122 (144)
T ss_dssp HHHHHC
T ss_pred HHHHCC
Confidence 876653
No 17
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=96.16 E-value=0.016 Score=43.59 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhc-----c-C--CcHHHHHHHHH
Q psy6184 10 PSHALASIKKKLTN---SNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVR-----G-T--QHEEVKAKILE 78 (156)
Q Consensus 10 ~k~AvraL~KrL~~---~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~-----~-~--~~~~Vk~kil~ 78 (156)
..+.+..|.|||.. ++...++-||+|||.|++|+.+.|-.++.+.-+ .|..|-. . . ....||+|+-+
T Consensus 45 ~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~vv~~~r~~~~--~i~~L~~F~~~d~~G~D~G~~VR~kak~ 122 (150)
T 3onk_A 45 REEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERFIDDTRNSIN--LIRILETFHYIDSQGRDQGINVRTRVKA 122 (150)
T ss_dssp HHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHHHHHHHTTHH--HHHGGGGCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHHhhhcccccCCCCCchHHHHHHHHHH
Confidence 35788999999963 489999999999999999999998887644433 2333321 1 1 22679999988
Q ss_pred HHHHHHH
Q psy6184 79 LIQAWAH 85 (156)
Q Consensus 79 li~~Wa~ 85 (156)
++....+
T Consensus 123 l~~LL~D 129 (150)
T 3onk_A 123 LIELLSD 129 (150)
T ss_dssp HHHHHTC
T ss_pred HHHHHcC
Confidence 8876543
No 18
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=96.05 E-value=0.0038 Score=45.09 Aligned_cols=73 Identities=14% Similarity=0.236 Sum_probs=52.9
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccch---hHHhhhccHHHHHHHHHhhc---cCCcHHHHHHHHHHHHH
Q psy6184 9 VPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGN---LIHDEVGTKAFMEQMKELVR---GTQHEEVKAKILELIQA 82 (156)
Q Consensus 9 ~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~---~fh~eIask~Fl~~l~kl~~---~~~~~~Vk~kil~li~~ 82 (156)
.+++.+.+|.++|+...++.-+..|.|++..++||.. .|... |-..|..++. ...+.++++++..++..
T Consensus 36 ~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~-----f~~~l~~~~~~~~~~~~~~~k~kl~kll~i 110 (135)
T 4fu3_A 36 HAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTRE-----FESVLVDAFSHVAREADEGCKKPLERLLNI 110 (135)
T ss_dssp GHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHH-----HHTTHHHHHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4788899999999877777889999999999999943 33332 2222333332 22456689999999999
Q ss_pred HHHH
Q psy6184 83 WAHA 86 (156)
Q Consensus 83 Wa~~ 86 (156)
|.+.
T Consensus 111 W~~r 114 (135)
T 4fu3_A 111 WQER 114 (135)
T ss_dssp HHHT
T ss_pred hcCC
Confidence 9973
No 19
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=94.55 E-value=0.15 Score=37.30 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHH----Hhhc---cCCcHHHHHHHHH
Q psy6184 8 IVPSHALASIKKKLTNS--NPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMK----ELVR---GTQHEEVKAKILE 78 (156)
Q Consensus 8 ~~~k~AvraL~KrL~~~--n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~----kl~~---~~~~~~Vk~kil~ 78 (156)
..+++.+.++.+.|... ++.-.+.-|.|++-.+.||-..-. .+|.+.+. .++. ...+.+++.++..
T Consensus 34 ~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~-----~~f~~~F~~~L~~~~~~~~~~~~~~~~~kv~r 108 (142)
T 2km4_A 34 RDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKI-----IQFQDSFGKVAAEVLGRINQEFPRDLKKKLSR 108 (142)
T ss_dssp GGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTC-----CHHHHHHHHTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCc-----hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35788999999999765 788999999999999999975421 23444433 3332 2357899999999
Q ss_pred HHHHHHHH
Q psy6184 79 LIQAWAHA 86 (156)
Q Consensus 79 li~~Wa~~ 86 (156)
++..|.+-
T Consensus 109 vl~iWeer 116 (142)
T 2km4_A 109 VVNILKER 116 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhcc
Confidence 99999874
No 20
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.87 E-value=0.57 Score=35.63 Aligned_cols=74 Identities=19% Similarity=0.160 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH
Q psy6184 10 PSHALASIKKKL-TNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHA 86 (156)
Q Consensus 10 ~k~AvraL~KrL-~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~ 86 (156)
-.+.+..|+++| +..|++|...|+..+..+.+..|..|...+ ..++..|.+.+.+ ....||+.+...+..+...
T Consensus 54 ~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~ 128 (242)
T 2qk2_A 54 YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPSLLEKFKE-KKPNVVTALREAIDAIYAS 128 (242)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHc
Confidence 467899999999 599999999999999999999999886654 5567777777665 4577999888888888654
No 21
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=93.06 E-value=0.37 Score=36.29 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhcc--------H----HHHHHHH-Hhhcc---CCcHHHHH
Q psy6184 11 SHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGT--------K----AFMEQMK-ELVRG---TQHEEVKA 74 (156)
Q Consensus 11 k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIas--------k----~Fl~~l~-kl~~~---~~~~~Vk~ 74 (156)
+-.+..|-+-++..-|.-=+-+|.|+|+.++|+-+.+.. .+. . .++.++. .++.+ ..+.+.|+
T Consensus 40 ~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k-~g~~~~a~~gt~a~~v~~~~e~i~~l~~~~~~~~~~~~k~ 118 (157)
T 3clj_A 40 SKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRS-NSNSSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKE 118 (157)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHT-CCC----STTSHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHh-cCCccCCCCccHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 445667777777666777788999999999998765533 111 1 1123322 23222 35789999
Q ss_pred HHHHHHHHHHHH--hhC
Q psy6184 75 KILELIQAWAHA--FRN 89 (156)
Q Consensus 75 kil~li~~Wa~~--F~~ 89 (156)
||..|+..|... |+.
T Consensus 119 Ki~klldiW~k~~~Fp~ 135 (157)
T 3clj_A 119 KIRMLLDIWDRSGLFQK 135 (157)
T ss_dssp HHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHccCCCCCH
Confidence 999999999976 654
No 22
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.70 E-value=1.3 Score=33.65 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchh--HHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH
Q psy6184 9 VPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNL--IHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHA 86 (156)
Q Consensus 9 ~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~--fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~ 86 (156)
+....+..|...|+++||.+...++..|..++.++|.. +...+ ..++..+.+++.+ ++.+||..+.+.+..-+..
T Consensus 130 ~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D-~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 130 SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNE-PDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999998753 33333 3566667777754 5788999999988887776
Q ss_pred hhC
Q psy6184 87 FRN 89 (156)
Q Consensus 87 F~~ 89 (156)
+..
T Consensus 207 vg~ 209 (242)
T 2qk2_A 207 MGD 209 (242)
T ss_dssp HCH
T ss_pred cCH
Confidence 653
No 23
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=90.50 E-value=3.5 Score=32.08 Aligned_cols=75 Identities=13% Similarity=0.101 Sum_probs=59.4
Q ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHccc-hhHH-hhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHh
Q psy6184 11 SHALASIKKKL-TNSNPHIVLYALLVLESCVKNCG-NLIH-DEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAF 87 (156)
Q Consensus 11 k~AvraL~KrL-~~~n~~v~l~AL~LLe~~vkNCG-~~fh-~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F 87 (156)
.+.+++|++.| +..|+.++..|+..+..+.+..+ ..|. ... ..++..+...++++ ...|++.+...+..+....
T Consensus 59 ~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~--~~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 59 SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV--SLVFTPLLDRTKEK-KPSVIEAIRKALLTICKYY 135 (249)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH--HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHc
Confidence 67899999999 79999999999999999998887 6665 322 33455555555543 4679999999999999986
Q ss_pred h
Q psy6184 88 R 88 (156)
Q Consensus 88 ~ 88 (156)
.
T Consensus 136 ~ 136 (249)
T 2qk1_A 136 D 136 (249)
T ss_dssp C
T ss_pred c
Confidence 4
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=90.29 E-value=1.4 Score=32.00 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWA 84 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa 84 (156)
++..|.+-|.+.++.++..|+..|-.+..+. ......+.....+..|..++.+ .+.+|++.++..+...+
T Consensus 139 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHh
Confidence 5778888889999999999999999988754 4445667677888999999875 57889999998887653
No 25
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=88.63 E-value=4.1 Score=31.68 Aligned_cols=78 Identities=10% Similarity=0.194 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccch---hHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH
Q psy6184 10 PSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGN---LIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHA 86 (156)
Q Consensus 10 ~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~---~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~ 86 (156)
..+.+..|..-|+|+||.+...++..|..|+.+++. .|...+ .+.++..+.+++.+ ++.+||+...+.+-.-...
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l-~~~iip~l~~~l~D-~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL-KDEVVPIVIQIVND-TQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHH-TTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHH-HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 457777888888999999999999999999999984 444322 24667777777754 5789999999999999888
Q ss_pred hhC
Q psy6184 87 FRN 89 (156)
Q Consensus 87 F~~ 89 (156)
+.+
T Consensus 222 vG~ 224 (249)
T 2qk1_A 222 FGM 224 (249)
T ss_dssp HCS
T ss_pred hCH
Confidence 865
No 26
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=88.19 E-value=2.5 Score=32.87 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhH
Q psy6184 14 LASIKKKLTNSNPHIVLYALLVLESCVKNCGNLI 47 (156)
Q Consensus 14 vraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~f 47 (156)
...++|.++..|..++..||.++..+++++|..+
T Consensus 57 ~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 57 PTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 4578899999999999999999999999988653
No 27
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=87.60 E-value=1.9 Score=33.59 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHH----HhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 10 PSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMK----ELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 10 ~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~----kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
....+..|..-++++||++..-++..|..|+++.|... +..+.++..+. +++. .++..||+-...++-+-+.
T Consensus 137 ~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~---~~~k~~l~~i~~~l~k~l~-d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 137 ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTN---VNVQTFLPELLKHVPQLAG-HGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTT---CCHHHHHHHHGGGHHHHHT-CSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCc---CCchhHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHH
Confidence 34556677777889999999999999999999988642 22244455444 4444 4688999999998877665
Q ss_pred Hhh
Q psy6184 86 AFR 88 (156)
Q Consensus 86 ~F~ 88 (156)
.+.
T Consensus 213 ~~G 215 (278)
T 4ffb_C 213 VTG 215 (278)
T ss_dssp C--
T ss_pred HhC
Confidence 443
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=87.04 E-value=3.4 Score=30.35 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=60.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhh
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFR 88 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~ 88 (156)
++..|..-|.+.++.++..|+..|..+..+ .......+.....+..|..++.+ .+.+|++.++..+..-.....
T Consensus 171 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 171 GVEVLVKLLTSTDSEVQKEAARALANIASG-PTSAIKAIVDAGGVEVLQKLLTS-TDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHCC-CcHHHHHHHHHHHHHHHcCCC
Confidence 677888888999999999999999988864 34445566677888999999875 467899999999998887544
No 29
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=86.44 E-value=4.4 Score=32.85 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhh
Q psy6184 10 PSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFR 88 (156)
Q Consensus 10 ~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~ 88 (156)
.++++..|.+=|..+|+.++++||.+|+-+.|-........+- +++++.++++++. .++.|.=+.+..+...=+.-+
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vp 107 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVP 107 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCC
Confidence 3567778888888999999999999999999997666555443 7889999998864 578898888888887766554
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=85.99 E-value=3.5 Score=30.31 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
++..|.+-|.+.++.++..|+..|..+..+.. .....+.....+..|.+++++. +..|+..++..+...+.
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIAS 73 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHc
Confidence 57788889999999999999999999988776 3455566678888899988763 57888888888877653
No 31
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=85.70 E-value=1.3 Score=35.86 Aligned_cols=45 Identities=13% Similarity=0.080 Sum_probs=38.9
Q ss_pred CCChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhh
Q psy6184 7 TIVPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEV 51 (156)
Q Consensus 7 ~~~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eI 51 (156)
..+..+.+++|.+|++.+|+.|++-||.++.-++..+.+.|-.++
T Consensus 60 ~~~~~~~~~~L~~Rl~~~~w~v~~KaLivlH~llreG~~~~l~~~ 104 (271)
T 3zyl_A 60 NVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYL 104 (271)
T ss_dssp TSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 445678999999999999999999999999999999887665554
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=85.57 E-value=1.8 Score=32.25 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=57.9
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 8 IVPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 8 ~~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
...+.-...+.+.|.+.++.++..|+..|-.+... .......+.....+..|.+++++. +..|+..++..+..-+.
T Consensus 8 ~~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 8 HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS 83 (252)
T ss_dssp CCTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhc
Confidence 34444577889999999999999999999665555 445556677778888999998764 47888888888776654
No 33
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=85.10 E-value=1.6 Score=35.98 Aligned_cols=45 Identities=13% Similarity=0.080 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhh
Q psy6184 7 TIVPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEV 51 (156)
Q Consensus 7 ~~~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eI 51 (156)
..+..+.+++|.+|+..+|+.+++-||.++.-|+..+.+.|-.++
T Consensus 60 ~~~~~~i~~~L~~Rl~~~~w~vv~KaLivlH~llreG~~~~l~~~ 104 (310)
T 3zym_A 60 NVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYL 104 (310)
T ss_dssp TSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCcHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 445678999999999999999999999999999999877665544
No 34
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=84.71 E-value=3.8 Score=34.37 Aligned_cols=93 Identities=13% Similarity=0.099 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHH---hhhcc------HHHHHHHHHhhc--cCCcHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIH---DEVGT------KAFMEQMKELVR--GTQHEEVKAKILELIQ 81 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh---~eIas------k~Fl~~l~kl~~--~~~~~~Vk~kil~li~ 81 (156)
.++-|-.=+.+.+++|+..||.||+.+|.++...+. .+|.+ ......+++++. +..+.+++-..+.||.
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 344444445678999999999999999999954443 33321 012556777775 4578999999999988
Q ss_pred HHHHHhhCCCCCcchH-HHHHhhhCCCC
Q psy6184 82 AWAHAFRNSPKYRAVP-TKSWMTDKGFK 108 (156)
Q Consensus 82 ~Wa~~F~~~~~l~~i~-~Y~~Lk~~Gi~ 108 (156)
.-=.... +=..+. +-+.|..+|++
T Consensus 283 ~lL~~ap---d~d~~~di~d~Le~~gi~ 307 (339)
T 3dad_A 283 KTLAALP---DQDSFYDVTDALEQQGME 307 (339)
T ss_dssp HHHHHCS---SHHHHHHHHHHHHHTTHH
T ss_pred HHHhcCC---ChhHHHHHHHHHHHccHH
Confidence 6644432 212244 66667777764
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=83.96 E-value=3.4 Score=33.33 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=56.8
Q ss_pred HHHHHHH-HhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKK-KLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 13 AvraL~K-rL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
++..|.. -|.++++.++..|...|-.++.|.. ..+..|....-+..|..+++..++..|+++++..|.....
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~-~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 4566667 5689999999999999999998753 4566666677888899999865678899988888777653
No 36
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=83.94 E-value=1.9 Score=35.11 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=40.1
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhcc
Q psy6184 8 IVPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGT 53 (156)
Q Consensus 8 ~~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIas 53 (156)
....+.+++|.+|....|+.|++-||.++.-++..+.+.|..++++
T Consensus 56 ~~~~~~~~~L~~R~~~~~w~va~K~LivlH~llreG~~~~~~~l~~ 101 (299)
T 1hx8_A 56 VSIPHLANLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYLAS 101 (299)
T ss_dssp SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 4457889999999999999999999999999999998877766643
No 37
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=81.69 E-value=8.7 Score=30.82 Aligned_cols=87 Identities=11% Similarity=0.069 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccch-hHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhhCCC
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGN-LIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFRNSP 91 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~-~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~~~~ 91 (156)
.+..|...|.+.++++..-|+..+..+...|+. .+...+ ...+..+...+++ ++..||..+...+...+..+...-
T Consensus 367 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~~~~ 443 (462)
T 1ibr_B 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAA 443 (462)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhccccc
Confidence 445566677889999999999999999988873 333333 4567777777765 468899999999999999887532
Q ss_pred -CCcchH-HHHHh
Q psy6184 92 -KYRAVP-TKSWM 102 (156)
Q Consensus 92 -~l~~i~-~Y~~L 102 (156)
.-.++. ++..|
T Consensus 444 ~~~~~l~~ll~~L 456 (462)
T 1ibr_B 444 INDVYLAPLLQCL 456 (462)
T ss_dssp CSTTTHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 123455 65554
No 38
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=81.59 E-value=6.5 Score=32.39 Aligned_cols=73 Identities=8% Similarity=0.062 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
++..|.+-|.++++.++..|...|-.+..+.+......|....-+..|++++....+..+++.++..+...+.
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 200 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 4777888889999999999999999998765556667777778888999976544567888888777755543
No 39
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=81.41 E-value=4.9 Score=32.33 Aligned_cols=72 Identities=10% Similarity=0.206 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHA 86 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~ 86 (156)
++..|.+-|+++++.++..|..+|-.+..+ +......+....++..|+.++... +..|++.++..|..-...
T Consensus 168 gi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 168 GFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHHHHHHHhC
Confidence 566777788899999999999999998887 455566777788999999999754 668999999888777654
No 40
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=80.93 E-value=6.3 Score=28.42 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
++..|.+-|.+.++.++..|+..|..+..+.... ...+.....+..|.+++++ .+.+|+..++..+.....
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIAS 167 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHH-HHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 5677888889999999999999999887754443 3345566788899999875 477899999988887764
No 41
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=80.87 E-value=8.7 Score=30.86 Aligned_cols=73 Identities=10% Similarity=0.066 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 12 HALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 12 ~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
.++..|.+-|++.++.++..|+..|..+..+.. .....+.....+..|..++++..+..|+..++..+...+.
T Consensus 107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDST-MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH-HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 367788888899999999999999999887653 2344455566788888888866678899998888777664
No 42
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=80.64 E-value=3.8 Score=34.41 Aligned_cols=75 Identities=8% Similarity=0.046 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 11 SHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 11 k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
.+.+..|.+.|.+.++.++..|+..|-.+..........++.....+..|+++++...+..|+..++..+...+.
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~ 147 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIAS 147 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 345788999999999999999999998888766644445556667888888988765457888888777766654
No 43
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=79.00 E-value=8.2 Score=28.56 Aligned_cols=70 Identities=20% Similarity=0.212 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWA 84 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa 84 (156)
++..|.+-|.+.++.++..|+..|-.+..+. ......+.....+..|..++++ .+..|+..++..+..-+
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~ 124 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIA 124 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Confidence 4566777788999999999999999887643 3345666666788889998876 46788888888877664
No 44
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=78.88 E-value=8.8 Score=30.81 Aligned_cols=73 Identities=5% Similarity=-0.011 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHA 86 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~ 86 (156)
++..|...|.+.++.++..|...|-.+..++.......+.....+..|..+++.. +.+|+..++..+......
T Consensus 319 ~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 319 IFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 4567777788889999999999998888776554444455667888888888754 678999998888777654
No 45
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=78.48 E-value=11 Score=29.42 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWA 84 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa 84 (156)
++..|..-|.++++.++..|...|-.+.... ..-...|....-+..|++++++..+.++++.+...+...+
T Consensus 53 ~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~-~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 53 GILKLLQLLKVQNEDVQRAVCGALRNLVFED-NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123 (233)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4667888889999999999999999988743 3445667777889999999986567889999887776665
No 46
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=78.20 E-value=12 Score=32.76 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccC-CcHHHHHHHHHHHHHHHHHhhC
Q psy6184 12 HALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGT-QHEEVKAKILELIQAWAHAFRN 89 (156)
Q Consensus 12 ~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~-~~~~Vk~kil~li~~Wa~~F~~ 89 (156)
..+..|.+.+.+.++.+...|+.++..+++.+|..|...+ ..++..+.+.+.+. .+.+||..++..+..-+..+..
T Consensus 639 ~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 3556677778888999999999999999999998765433 45555555666543 4578999999999888887754
No 47
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=76.15 E-value=6.5 Score=35.00 Aligned_cols=73 Identities=10% Similarity=0.021 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
++..|.+-|.+.++.++..|...|-.+..+++......|....-+..|+++++...+.++++.+...+...+.
T Consensus 91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 4667888889999999999999999998876677788888888899999999865567788887766655543
No 48
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=74.50 E-value=18 Score=29.76 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
++..|.+-|++.++.++..|+..|-.+..+.... ...+.....+..|.+++++ .+.+++..+...+..|+.
T Consensus 102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-KMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH-HHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch-HHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHh
Confidence 5667778888999999999999998887764333 4455667788889999875 467788888888888874
No 49
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=74.44 E-value=17 Score=30.12 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQA 82 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~ 82 (156)
.+..|.+.+...+++|...++..|..+.++.|..+.. ..++..|.++..+ .+.+||..+.+.+..
T Consensus 520 ~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~~~p~l~~l~~d-~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 520 MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ----SEVKPILEKLTQD-QDVDVKYFAQEALTV 584 (588)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH----HHHHHHHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhH----HHHHHHHHHHcCC-CchhHHHHHHHHHHH
Confidence 4445666667777888888888888888777776542 4555556665443 466777777766654
No 50
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=74.04 E-value=14 Score=29.70 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHH---HHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 9 VPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFM---EQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 9 ~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl---~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
+|.-....|..-++|+|+++-.-.|..+..++.+.|... ...+ ..+.+++.+ .+..||+-++..+-+-..
T Consensus 164 ~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~------~~~l~~~~~ia~ll~D-~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 164 GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP------LKSLSVEKTVAPFVGD-KDVNVRNAAINVLVACFK 236 (266)
T ss_dssp CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG------GGGGCHHHHHGGGGGC-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc------cccccchHHHHHHHcC-CCHHHHHHHHHHHHHHHH
Confidence 345566677778899999999999999999999999982 2245 778888876 578999999888775544
Q ss_pred H
Q psy6184 86 A 86 (156)
Q Consensus 86 ~ 86 (156)
-
T Consensus 237 ~ 237 (266)
T 2of3_A 237 F 237 (266)
T ss_dssp H
T ss_pred H
Confidence 3
No 51
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=72.66 E-value=19 Score=31.27 Aligned_cols=71 Identities=13% Similarity=0.168 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWA 84 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa 84 (156)
++..|.+-|++.++.++..|+..|-.+..+.... ...+.....+..|++++.+..+.+++..+...+...+
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~-~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls 85 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS 85 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHH-HHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhH-HHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 5778888889999999999999999998876432 3334456788889998876667888888888777554
No 52
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=72.59 E-value=19 Score=29.59 Aligned_cols=73 Identities=12% Similarity=0.172 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHH
Q psy6184 11 SHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWA 84 (156)
Q Consensus 11 k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa 84 (156)
..++..|.+-|.+.++.++..|+..|-.+..+... -...+.....+..|.+++.+..+.+++......+...+
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls 88 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS 88 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHH-HHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCcc-HHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34688888888999999999999999998876532 23334456788888888876567788888887777654
No 53
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=72.51 E-value=14 Score=31.62 Aligned_cols=73 Identities=8% Similarity=0.062 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
++..|.+-|.+.++.++..|...|-.+..+.+......|....-+..|++++....+..+++.++..+...+.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 316 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc
Confidence 4778888889999999999999998887654455566777777888899976555577888888887766654
No 54
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=71.37 E-value=22 Score=32.06 Aligned_cols=73 Identities=12% Similarity=0.169 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHH
Q psy6184 11 SHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWA 84 (156)
Q Consensus 11 k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa 84 (156)
..++..|.+-|.+.++.++..|+..|-.+.++.... +..+.....+..|++++++..+.+++..+...+...+
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~-~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls 221 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS 221 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHH-HHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhH-HHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 456777888888999999999999999988765432 3444467899999998876567888888888877654
No 55
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=70.81 E-value=8.8 Score=34.28 Aligned_cols=124 Identities=12% Similarity=0.138 Sum_probs=77.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHccch-hHHhhhcc-H---HHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhh
Q psy6184 14 LASIKKKLTNSNPHIVLYALLVLESCVKNCGN-LIHDEVGT-K---AFMEQMKELVRGTQHEEVKAKILELIQAWAHAFR 88 (156)
Q Consensus 14 vraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~-~fh~eIas-k---~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~ 88 (156)
+..+..=|++..+.++..+|.+++.++++-+. .++....+ . .+...+.+++...+...+|++.+.+++.-=..|.
T Consensus 319 l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~~~~ 398 (596)
T 4f52_E 319 MGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYINKLD 398 (596)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHhCC
Confidence 44566667888899999999999988877654 34444332 3 4445555655557889999999999998888888
Q ss_pred CCCCCcchH-HHHHhhhCC------------CC--CCCCCCCCCCChhhhhhhhhccccccCCc
Q psy6184 89 NSPKYRAVP-TKSWMTDKG------------FK--NPSKSSDSLGLELQIFRICHIHFSEIKGI 137 (156)
Q Consensus 89 ~~~~l~~i~-~Y~~Lk~~G------------i~--FP~~~~~a~f~~~~~~~~~~~~~~~~~~~ 137 (156)
.+.+|..+. +.+...-.| |. .-..+.++.|..+++..++..-+....|.
T Consensus 399 ~e~R~~iL~~LL~~~~~~~v~~~lI~~~KdeI~~al~~~~~~~~F~~~~l~~ll~~vl~lp~g~ 462 (596)
T 4f52_E 399 SQGKYTLFRCLLNTSNHSGVEAFIIQNIKNQIDMSLKRTRNNKWFTGPQLISLLDLVLFLPEGA 462 (596)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTCCC----CTTTSHHHHHHHHHHSCCTTTT
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhcCCCCCccccHHHHHHHHHHhcCCCCC
Confidence 666655544 432221111 11 11234456788887666665555555554
No 56
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=70.73 E-value=5.2 Score=28.16 Aligned_cols=70 Identities=9% Similarity=0.142 Sum_probs=44.2
Q ss_pred HHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhhCCCCCcchH-HHHHhhhCCCC
Q psy6184 36 LESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFRNSPKYRAVP-TKSWMTDKGFK 108 (156)
Q Consensus 36 Le~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~~~~~l~~i~-~Y~~Lk~~Gi~ 108 (156)
++.+.+|-|.....-...-.|.+.=+..+....+..+++++..|+..|...-..... +. ++..|++-|..
T Consensus 27 l~~Ia~~LG~~Wk~LAR~LGlse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~~AT---~~~L~~AL~~~~l~ 97 (115)
T 2o71_A 27 INQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQAT---FQSLHNGLRAVEVD 97 (115)
T ss_dssp HHHHHHHCCTTHHHHHHHTTCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGGGCC---HHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcH---HHHHHHHHHHcCCC
Confidence 344467777654443222244444333333223357999999999999998654443 66 99999988864
No 57
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=70.63 E-value=16 Score=32.15 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccc
Q psy6184 11 SHALASIKKKLTNSNPHIVLYALLVLESCVKNCG 44 (156)
Q Consensus 11 k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG 44 (156)
+.|+..|.+-|.++++++++.||..+..++...+
T Consensus 328 ~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~ 361 (621)
T 2vgl_A 328 VRACNQLGQFLQHRETNLRYLALESMCTLASSEF 361 (621)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC
Confidence 4567777777788999999999988888776654
No 58
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=70.58 E-value=12 Score=31.32 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 14 LASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 14 vraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
+..|..-|.+.++.++..|+..|..+..+++......+.....+..|..++.. .+.+|+..++..|.....
T Consensus 373 i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 373 IGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC-PDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHH
Confidence 45566677788999999999999999998777777777777788888898876 467888888877766644
No 59
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=70.56 E-value=32 Score=30.66 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhhC
Q psy6184 12 HALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFRN 89 (156)
Q Consensus 12 ~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~~ 89 (156)
..+..|...+.+.++.+..-|+..+..++..|+..+... -..++..+..++++ ++..||..+...+..-+..+..
T Consensus 359 ~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~--l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~ 433 (852)
T 4fdd_A 359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY--LPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVS 433 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG--HHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH--HHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcc
Confidence 355666777888999999999999999999998755432 24555666666654 5788999888888877776654
No 60
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=70.53 E-value=22 Score=32.26 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=73.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhc-cHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhhCC
Q psy6184 12 HALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVG-TKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFRNS 90 (156)
Q Consensus 12 ~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIa-sk~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~~~ 90 (156)
+.+..|---|.+.+-++-++|+.+|.++..|.+...+..|- ...=+..|+.++++. .+.||...+.+|...+..=..-
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~~i 200 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSNGAI 200 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCHHH
Confidence 55677777788999999999999999999999999999887 446678888888764 6889999999998887532111
Q ss_pred ---CCC-cchH-HHHHhhhCCC
Q psy6184 91 ---PKY-RAVP-TKSWMTDKGF 107 (156)
Q Consensus 91 ---~~l-~~i~-~Y~~Lk~~Gi 107 (156)
-.| ..|. +++-++.+|.
T Consensus 201 QklVAFEnaFe~Lf~Ii~~Eg~ 222 (651)
T 3grl_A 201 QKIVAFENAFERLLDIITEEGN 222 (651)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTG
T ss_pred HHHHHHhccHHHHHHHHHhcCC
Confidence 112 3355 7788888885
No 61
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=70.38 E-value=6 Score=27.82 Aligned_cols=70 Identities=9% Similarity=0.142 Sum_probs=45.7
Q ss_pred HHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhhCCCCCcchH-HHHHhhhCCCC
Q psy6184 36 LESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFRNSPKYRAVP-TKSWMTDKGFK 108 (156)
Q Consensus 36 Le~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~~~~~l~~i~-~Y~~Lk~~Gi~ 108 (156)
++.+.+|-|.....-.-.-.|.+.=+..+....+..+++++..|+..|.+.-..... +. ++..|++-|..
T Consensus 27 l~~Ia~~lG~~Wk~LAR~LGlse~dId~I~~~~p~~l~eq~~qmL~~W~~r~G~~AT---~~~L~~AL~~~~l~ 97 (114)
T 2of5_A 27 INQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQAT---FQSLHNGLRAVEVD 97 (114)
T ss_dssp HHHHHHTCCSTHHHHHHTTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGGCC---HHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcH---HHHHHHHHHHcCCC
Confidence 444567778765554333355554344443223357999999999999998654444 66 99999887764
No 62
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=70.02 E-value=38 Score=30.21 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhhC
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFRN 89 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~~ 89 (156)
.+..|...+.++++.+...|..++..+++.||..|...+ ..|+..+.+.+. .....|+.-+...+..-+..+..
T Consensus 630 ~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l--~~~lp~l~~~l~-~~~~~v~~~a~~alg~i~~~~~~ 703 (852)
T 4fdd_A 630 ILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI--ADFMPILGTNLN-PEFISVCNNATWAIGEISIQMGI 703 (852)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHTCC-TTSHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHcC-ccchHHHHHHHHHHHHHHHHhhH
Confidence 466777778888999999999999999999998877654 347777777664 34578888888888888877754
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=69.20 E-value=19 Score=30.11 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
++..|.+-|.++++.++..|...|-.+... .......|....-+..|+++++...+.++++.+...+..-+.
T Consensus 45 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~ 116 (457)
T 1xm9_A 45 GICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS 116 (457)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhc
Confidence 466788888899999999999999888873 355566676777788899999855677888888877766663
No 64
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=69.04 E-value=14 Score=26.78 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHH
Q psy6184 11 SHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAW 83 (156)
Q Consensus 11 k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~W 83 (156)
.+++..|.+-|.+.++.|...|+..|..+ +..+-+..|..++++ .+..|+..+...+...
T Consensus 111 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 111 ERAVEPLIKALKDEDWFVRIAAAFALGEI------------GDERAVEPLIKALKD-EDGWVRQSAADALGEI 170 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH------------CCGGGHHHHHHHTTC-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc------------CCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 35677888888888898888888777654 223455666666643 3556766666555443
No 65
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=68.27 E-value=25 Score=28.01 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHcc-chhHHhhhccHHHHHHHHHhhccCC-cHHHHHHHHHHHHHHH
Q psy6184 11 SHALASIKKKLTNS--NPHIVLYALLVLESCVKNC-GNLIHDEVGTKAFMEQMKELVRGTQ-HEEVKAKILELIQAWA 84 (156)
Q Consensus 11 k~AvraL~KrL~~~--n~~v~l~AL~LLe~~vkNC-G~~fh~eIask~Fl~~l~kl~~~~~-~~~Vk~kil~li~~Wa 84 (156)
.+.+..|...+.+. ++.+...|+..|..+++.+ +..+...+ ..++..+...+++.. +..||..++..+..|.
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 35677788888888 9999999999999999887 43322211 245566666666543 6889998888877654
No 66
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=68.07 E-value=43 Score=29.30 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccc-hhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhhC
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCG-NLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFRN 89 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG-~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~~ 89 (156)
.+..|...|.+.++++...|+..+..+...|+ ..+...+ ..++..+...+++ .+..||..++..+..+...+..
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCch
Confidence 44556667788999999999999999998888 3333221 3345555555554 5688999999999999998765
No 67
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=68.04 E-value=17 Score=31.77 Aligned_cols=93 Identities=19% Similarity=0.150 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhh-------------------------ccH----HHHHHHHH
Q psy6184 12 HALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEV-------------------------GTK----AFMEQMKE 62 (156)
Q Consensus 12 ~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eI-------------------------ask----~Fl~~l~k 62 (156)
.|+..|.+-|.++++++.+.||..|..++...+..|.... ++. ..+++|..
T Consensus 313 ~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~ 392 (618)
T 1w63_A 313 LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLY 392 (618)
T ss_dssp HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 3677788888899999999999999888877655443211 111 12222222
Q ss_pred hhccCCcHHHHHHHHHHHHHHHHHhhCCCCCcchH-HHHHhhhCC
Q psy6184 63 LVRGTQHEEVKAKILELIQAWAHAFRNSPKYRAVP-TKSWMTDKG 106 (156)
Q Consensus 63 l~~~~~~~~Vk~kil~li~~Wa~~F~~~~~l~~i~-~Y~~Lk~~G 106 (156)
.+.. .+.++|..+...|..-+..|..+. -.++. +-+.|+..|
T Consensus 393 ~l~~-~d~e~r~~~v~~I~~la~k~~~~~-~~~v~~ll~lL~~~~ 435 (618)
T 1w63_A 393 FLDS-CEPEFKADCASGIFLAAEKYAPSK-RWHIDTIMRVLTTAG 435 (618)
T ss_dssp HHHH-CCHHHHHHHHHHHHHHHHSSCCCH-HHHHHHHHHHHHHTG
T ss_pred HHHh-CCHHHHHHHHHHHHHHHHHhCccH-HHHHHHHHHHHHhcc
Confidence 2222 456788888888888777664321 12344 556677766
No 68
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=67.79 E-value=22 Score=32.02 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 12 HALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 12 ~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
.++..|.+-|++.++.++..|+..|-.+..+.... ...+....-+..|++++++ .+.+|+..++..+..|+.
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~-~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA-KMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAY 305 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH-HHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh-HHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhc
Confidence 35777888888999999999999999988765332 3444455677888888875 467899999999999984
No 69
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=67.60 E-value=13 Score=31.11 Aligned_cols=73 Identities=8% Similarity=0.020 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHccch--hHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHh
Q psy6184 14 LASIKKKLTNSNPHIVLYALLVLESCVKNCGN--LIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAF 87 (156)
Q Consensus 14 vraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~--~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F 87 (156)
+..|..-|.+.++.++..|+..|..+..+++. .....+.....+..|..++.. .+..|+..++..+......-
T Consensus 385 l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI-ADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhh
Confidence 44566667788999999999999999888765 445555556678888888875 47789999988888776644
No 70
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=66.94 E-value=9.7 Score=31.97 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 12 HALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 12 ~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
..+..|...|++.++.++..|+..|-.+....+.+-...+.....+..|+.++++..+..|+..++..+...+.
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~ 160 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 160 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 45778888999999999999999998886654222223455567788888888765577888888777765543
No 71
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=66.41 E-value=26 Score=30.34 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
++..|.+-|.+.++.++..|+..|-.+..+... ....+.....+..|++++++. +..++..++..+..|+.
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~-~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch-hHHHHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHh
Confidence 567778888899999999999999988876533 344555667888899998764 45778877778888874
No 72
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=66.11 E-value=42 Score=29.35 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhcc-CCcHHHHHHHHHHHHHHHHHhh
Q psy6184 11 SHALASIKKKLTNS-NPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRG-TQHEEVKAKILELIQAWAHAFR 88 (156)
Q Consensus 11 k~AvraL~KrL~~~-n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~-~~~~~Vk~kil~li~~Wa~~F~ 88 (156)
...+..|.+-|.+. ++.+...|+.++..+++.+|..|...+ .+++..+...+++ ..+.+++.-++..+..-+..+.
T Consensus 648 ~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g 725 (876)
T 1qgr_A 648 EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC--DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 725 (876)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhc
Confidence 34566677777665 889999999999999999998765533 5667777777764 3467899999999988888776
Q ss_pred CCCCC-cchH-HHHHhhh
Q psy6184 89 NSPKY-RAVP-TKSWMTD 104 (156)
Q Consensus 89 ~~~~l-~~i~-~Y~~Lk~ 104 (156)
.+ + +++. ++..|..
T Consensus 726 ~~--~~~~l~~~~~~l~~ 741 (876)
T 1qgr_A 726 GE--FKKYLEVVLNTLQQ 741 (876)
T ss_dssp GG--GGGGHHHHHHHHHH
T ss_pred hh--HHHHHHHHHHHHHH
Confidence 43 3 2344 5555543
No 73
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=65.39 E-value=22 Score=30.14 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWA 84 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa 84 (156)
.+..|.+.|++.|+.+++.|+.-+--+..+-..+-..+|.....+..|+.+++...+..++..+...|...+
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia 148 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIA 148 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467788899999999999999888766554444434556667788888888876666777776666555544
No 74
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=65.29 E-value=23 Score=29.60 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHH
Q psy6184 11 SHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHA 86 (156)
Q Consensus 11 k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~ 86 (156)
++.+..|-+=+.+...|.+-++|+-+-.||..- ..+..-|.+.+|+..+..++.+ .+..|.+..|+++...-..
T Consensus 159 ~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v-~Gm~gvvs~~~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~ 232 (339)
T 3dad_A 159 SEGLSCLIRVGAAADHNYQSYILRALGQLMLFV-DGMLGVVAHSDTIQWLYTLCAS-LSRLVVKTALKLLLVFVEY 232 (339)
T ss_dssp TTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH-HHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc-ccccchhCCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHcc
Confidence 455777777788889999999999999998751 1122334489999999999985 6788999999998776554
No 75
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=65.04 E-value=62 Score=27.19 Aligned_cols=70 Identities=10% Similarity=0.037 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAW 83 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~W 83 (156)
++..|..-+.+.++.++..|...|-.+..++...-...+.+...+..|..+++. .+.+|...++..|..-
T Consensus 359 ~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~-~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 359 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA-KDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 455667777889999999999888888887776655666777788888888875 4677888777766544
No 76
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=64.99 E-value=5.3 Score=26.81 Aligned_cols=69 Identities=10% Similarity=0.129 Sum_probs=40.6
Q ss_pred HHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhhCCCCCcchH-HHHHhhhCC
Q psy6184 35 VLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFRNSPKYRAVP-TKSWMTDKG 106 (156)
Q Consensus 35 LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~~~~~l~~i~-~Y~~Lk~~G 106 (156)
.++.+..|.|..+..-.-.-.|.+.=+.-+....+..+++++..|+..|...-..++. +. ++..|++-|
T Consensus 16 ~~~~ia~~lg~~Wk~Lar~Lg~~~~~I~~I~~~~~~d~~eq~~~mL~~W~~~~g~~At---~~~L~~AL~~~~ 85 (99)
T 1fad_A 16 AFDIVCDNVGRDWKRLARELKVSEAKMDGIEEKYPRSLSERVRESLKVWKNAEKKNAS---VAGLVKALRTCR 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGGGS---HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHCC
Confidence 3445556666544332222244444333333222345999999999999987655444 66 888887755
No 77
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=63.45 E-value=46 Score=27.44 Aligned_cols=74 Identities=11% Similarity=-0.011 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhhC
Q psy6184 11 SHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFRN 89 (156)
Q Consensus 11 k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~~ 89 (156)
...+..+.+.|...++.|...|+..+..+++++|..++. ..++..|..+.+ ..+..||...+..+...+..+..
T Consensus 440 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~llp~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~~ 513 (588)
T 1b3u_A 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAH----ATIIPKVLAMSG-DPNYLHRMTTLFCINVLSEVCGQ 513 (588)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHH----HHTHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHH----HHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhcCH
Confidence 345666777777888888888888888888888876542 345555655554 34567888888888887776653
No 78
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=62.17 E-value=10 Score=26.94 Aligned_cols=68 Identities=7% Similarity=0.148 Sum_probs=41.9
Q ss_pred HHHHHHccchhHHhhhccHHHHHH-HHHhhccCCcHHHHHHHHHHHHHHHHHhhCCCCCcchH-HHHHhhhCCC
Q psy6184 36 LESCVKNCGNLIHDEVGTKAFMEQ-MKELVRGTQHEEVKAKILELIQAWAHAFRNSPKYRAVP-TKSWMTDKGF 107 (156)
Q Consensus 36 Le~~vkNCG~~fh~eIask~Fl~~-l~kl~~~~~~~~Vk~kil~li~~Wa~~F~~~~~l~~i~-~Y~~Lk~~Gi 107 (156)
++.+..|-|.....-...=.|-+. |..+-.+++ ..+++++.+|+..|...-..+.. +. ++..|++-|.
T Consensus 9 f~~Ia~~lG~~Wk~LAR~LGlse~dId~Ie~~~p-~dl~eq~~~mL~~W~~r~G~~AT---v~~L~~AL~~i~~ 78 (122)
T 3ezq_B 9 FNVICDNVGKDWRRLARQLKVSDTKIDSIEDRYP-RNLTERVRESLRIWKNTEKENAT---VAHLVGALRSCQM 78 (122)
T ss_dssp HHHHHTTCCTTHHHHHHHTTCCHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHCTTTCC---HHHHHHHHHHTTC
T ss_pred HHHHHHhhhhhHHHHHHHhCCCHHHHHHHHHHCC-CCHHHHHHHHHHHHHHhhCCCch---HHHHHHHHHHCCC
Confidence 455566667554432222244433 333333333 35999999999999987654444 67 9999987664
No 79
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=62.16 E-value=31 Score=24.58 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHH
Q psy6184 11 SHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAW 83 (156)
Q Consensus 11 k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~W 83 (156)
.+++..|.+-|.+.++.|...|+..|..+ +..+.+..|..++++ .+..|+..++..+...
T Consensus 106 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~d-~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 106 ERAVEPLIKALKDEDWFVRIAAAFALGEI------------GDERAVEPLIKALKD-EDGWVRQSAADALGEI 165 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH------------TCGGGHHHHHHHTTC-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------CCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 35677888888899999998888877654 234556677777764 4567777777766655
No 80
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=59.99 E-value=35 Score=26.50 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCCH--HHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNP--HIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 13 AvraL~KrL~~~n~--~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
.+..|.+.|.+.++ .++..|...+-.+..+. ..-...|....-+..|+.+++. .+.+|++.....+..++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHh
Confidence 45677788888888 88888876666555433 3345667777778889999975 578899999999988874
No 81
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=59.76 E-value=40 Score=23.94 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6184 12 HALASIKKKLTNSNPHIVLYALLVL 36 (156)
Q Consensus 12 ~AvraL~KrL~~~n~~v~l~AL~LL 36 (156)
+++..|.+.|.++++.+...|+..|
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L 69 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADAL 69 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3445555555555555555555444
No 82
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=58.80 E-value=42 Score=24.05 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6184 12 HALASIKKKLTNSNPHIVLYALLVL 36 (156)
Q Consensus 12 ~AvraL~KrL~~~n~~v~l~AL~LL 36 (156)
+++..|.+.|.+.++.+...|+..|
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL 74 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADAL 74 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3445555555555555555555444
No 83
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=58.80 E-value=37 Score=22.82 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q psy6184 14 LASIKKKLTNSNPHIVLYALLVLE 37 (156)
Q Consensus 14 vraL~KrL~~~n~~v~l~AL~LLe 37 (156)
+..|.+-|++.++.+...|+..|.
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~ 67 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIG 67 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 567777778888888877776553
No 84
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=58.61 E-value=51 Score=28.33 Aligned_cols=70 Identities=11% Similarity=0.256 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 11 SHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 11 k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
...+..|.+-|.+++|.|...|...+-.+.+.+...+. ..+|++.+..++.+ .+..|+.-++..+..-..
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~----~~~~~~~l~~lL~d-~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE----DQGFLDSLRDLIAD-SNPMVVANAVAALSEISE 189 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH----HHHHHHHHHHTTSC-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc----cccHHHHHHHHhCC-CChhHHHHHHHHHHHHHh
Confidence 34455577777888888888888777777665544322 14688888888874 467888888888877543
No 85
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=56.27 E-value=46 Score=22.84 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhC
Q psy6184 67 TQHEEVKAKILELIQAWAHAFRN 89 (156)
Q Consensus 67 ~~~~~Vk~kil~li~~Wa~~F~~ 89 (156)
.++.+|+..+..||..|......
T Consensus 66 ~~~~~V~~lAk~Lv~~WK~~v~~ 88 (103)
T 1wjt_A 66 CSDKEVVSLAKVLIKNWKRLLDS 88 (103)
T ss_dssp CCCSHHHHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999998875
No 86
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=55.14 E-value=94 Score=26.09 Aligned_cols=71 Identities=10% Similarity=0.028 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWA 84 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa 84 (156)
++..|..-|.+.++.++..|...|-.+..++...-...+.....+..|..++.. .+.+|...++..|..--
T Consensus 378 ~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~-~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 378 LVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA-KDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence 455666677889999999998888877777766555556677788888888875 46777777776655443
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=54.36 E-value=54 Score=26.13 Aligned_cols=68 Identities=12% Similarity=0.244 Sum_probs=46.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHccchh---HHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHh
Q psy6184 18 KKKLTNSNPHIVLYALLVLESCVKNCGNL---IHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAF 87 (156)
Q Consensus 18 ~KrL~~~n~~v~l~AL~LLe~~vkNCG~~---fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F 87 (156)
.-|+...|+++.+.+|.+|..++..-+.. |+..-+ ..|+-.|+.-+ ......||+.+.+++..-...+
T Consensus 93 ~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~lP~LveKl-Gd~k~~vR~~~r~il~~l~~v~ 163 (266)
T 2of3_A 93 TLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFVPYLLLKT-GEAKDNMRTSVRDIVNVLSDVV 163 (266)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHHC
Confidence 45788899999999999999998766543 332211 23555544333 2345789999999988877654
No 88
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=54.19 E-value=36 Score=28.32 Aligned_cols=70 Identities=7% Similarity=0.087 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 14 LASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 14 vraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
+..|.+.|.+.++.++..|...|..+..+- +.....|.....+..|++++++ .+..++......+...+.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhc
Confidence 556778888999999999999988876432 3445577788889999999975 467788888888877764
No 89
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=53.25 E-value=46 Score=27.97 Aligned_cols=70 Identities=10% Similarity=0.074 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHc-cchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKN-CGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAW 83 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkN-CG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~W 83 (156)
++.-|.+-|++.|+.+|+.|..-+--|... ..+++. +|....-+..|+.+++...+..|+..+...+..-
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~-~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~ni 128 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPID-NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNI 128 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHH-HHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 377888999999999999999887765543 344443 3445567788888887655666776655555444
No 90
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=51.23 E-value=20 Score=24.58 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhCCCCCcchH-HHHHhhhCCC
Q psy6184 69 HEEVKAKILELIQAWAHAFRNSPKYRAVP-TKSWMTDKGF 107 (156)
Q Consensus 69 ~~~Vk~kil~li~~Wa~~F~~~~~l~~i~-~Y~~Lk~~Gi 107 (156)
+..+++++..|+..|...-..+.. +. +++.|++-|.
T Consensus 53 ~~~~~eq~~~mL~~W~~r~G~~AT---~~~L~~AL~~~~~ 89 (110)
T 1wxp_A 53 SEDMKMRAKQLLVAWQDQEGVHAT---PENLINALNKSGL 89 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHGGGCC---HHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHhhCcCcH---HHHHHHHHHHcCc
Confidence 346899999999999987654444 66 8888887664
No 91
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=49.03 E-value=82 Score=29.32 Aligned_cols=72 Identities=7% Similarity=0.081 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccC-CcHHHHHHHHHHHHHHHHHh
Q psy6184 14 LASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGT-QHEEVKAKILELIQAWAHAF 87 (156)
Q Consensus 14 vraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~-~~~~Vk~kil~li~~Wa~~F 87 (156)
+..|.+.|++.++.+...++.++..+++.|+..+... -..++..+..++.+. ....|+..++..+..+...+
T Consensus 436 l~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~--l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~ 508 (1230)
T 1u6g_C 436 VKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQH--IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 508 (1230)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGG--HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHH--HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhC
Confidence 4456666889999999999999999999987654322 145666667777653 34688988888888887643
No 92
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=48.48 E-value=88 Score=27.35 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhh---cc--CCcHHHHHHHHHHHHH
Q psy6184 8 IVPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELV---RG--TQHEEVKAKILELIQA 82 (156)
Q Consensus 8 ~~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~---~~--~~~~~Vk~kil~li~~ 82 (156)
..|.+.++.|.+++...++.|+..+|+.+--+...+++ ..+.+..++ .. ..+.+||+|..+..+-
T Consensus 517 ~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~----------~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~L 586 (621)
T 2vgl_A 517 SSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE----------VKATIQDVLRSDSQLKNADVELQQRAVEYLRL 586 (621)
T ss_dssp SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG----------GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 45778899999999999999999999877766554432 223344443 33 6789999999987666
Q ss_pred HH
Q psy6184 83 WA 84 (156)
Q Consensus 83 Wa 84 (156)
..
T Consensus 587 l~ 588 (621)
T 2vgl_A 587 ST 588 (621)
T ss_dssp HH
T ss_pred Hc
Confidence 43
No 93
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=48.04 E-value=79 Score=24.59 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=38.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhcc---HHHHHHHHHhhc-cCCcHHHHHHHHHHHHHHHHHhh
Q psy6184 15 ASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGT---KAFMEQMKELVR-GTQHEEVKAKILELIQAWAHAFR 88 (156)
Q Consensus 15 raL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIas---k~Fl~~l~kl~~-~~~~~~Vk~kil~li~~Wa~~F~ 88 (156)
.+|++=|.+++.. .+.++=.++++||..+...-+. ..+++.|..++. ...+..|+-.|..++..=...+.
T Consensus 169 ~~l~~Ll~~~~e~----~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~dLR~~~W~ 242 (260)
T 1hu3_A 169 DCVVKLLKNHDEE----SLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWV 242 (260)
T ss_dssp HHHHHHHHSCSHH----HHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhCCCCHH----HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 3444444555544 4566666777788887653321 233344444443 34567777777777765444443
No 94
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=46.62 E-value=25 Score=24.01 Aligned_cols=37 Identities=5% Similarity=0.087 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHHHHHhhCCCCCcchH-HHHHhhhCCCC
Q psy6184 69 HEEVKAKILELIQAWAHAFRNSPKYRAVP-TKSWMTDKGFK 108 (156)
Q Consensus 69 ~~~Vk~kil~li~~Wa~~F~~~~~l~~i~-~Y~~Lk~~Gi~ 108 (156)
+..+++++..|+..|...-..+.. +. ++..|++-|..
T Consensus 54 p~~~~eq~~~mL~~W~~~~g~~AT---~~~L~~aL~~i~r~ 91 (111)
T 2yqf_A 54 PNSLLEQSVALLNLWVIREGQNAN---MENLYTALQSIDRG 91 (111)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCC---HHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHhhCCCch---HHHHHHHHHHcCcH
Confidence 357999999999999988544443 66 88888876643
No 95
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=46.51 E-value=92 Score=28.99 Aligned_cols=91 Identities=9% Similarity=0.115 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhh
Q psy6184 10 PSHALASIKKKLT-NSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFR 88 (156)
Q Consensus 10 ~k~AvraL~KrL~-~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~ 88 (156)
..+.+..|..-+. +.++.++..|+..+-.+..++|..+...+ .+++..+...+.+ .+..||.+++..+...+....
T Consensus 131 ~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 131 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhcC
Confidence 4566777777887 68999999999999999988887654322 5566666666654 457899998888777765443
Q ss_pred CCCCCcc-hH-HHHHhhh
Q psy6184 89 NSPKYRA-VP-TKSWMTD 104 (156)
Q Consensus 89 ~~~~l~~-i~-~Y~~Lk~ 104 (156)
. ..+.. +. +.+.|+.
T Consensus 208 ~-~~~~~~l~~l~~~L~~ 224 (1230)
T 1u6g_C 208 N-IVFVDLIEHLLSELSK 224 (1230)
T ss_dssp ----CTTHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhcc
Confidence 2 22333 33 5555544
No 96
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=43.27 E-value=36 Score=24.08 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhcc-CCcHHHHHHHHHHHHHHHH
Q psy6184 54 KAFMEQMKELVRG-TQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 54 k~Fl~~l~kl~~~-~~~~~Vk~kil~li~~Wa~ 85 (156)
+.|+..|+++.++ ....+|-+++.+||+..-+
T Consensus 23 k~FL~tLi~las~~~~spev~~~Vr~LVq~Ll~ 55 (114)
T 2p6v_A 23 XNFLSTLIXLASSGXQSTETAANVXELVQNLLD 55 (114)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccccChHHHHHHHHHHHHHHH
Confidence 7999999999976 4567888888888887754
No 97
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=42.99 E-value=43 Score=27.02 Aligned_cols=69 Identities=7% Similarity=0.129 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHH
Q psy6184 10 PSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAW 83 (156)
Q Consensus 10 ~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~W 83 (156)
.+..+..|-.=|.++|+.++..||+++-....-.|.+=+. ....+++..+++.. +..+++++|..+..-
T Consensus 148 ~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~----~~I~~eI~elL~~e-D~~l~e~aLd~Le~i 216 (265)
T 3b2a_A 148 SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL----TLILDEIPSLLQND-NEFIVELALDVLEKA 216 (265)
T ss_dssp CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG----GGTTTTHHHHHTCS-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 4556666666678999999999998877665544433111 34466777888765 888999999887654
No 98
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=42.02 E-value=1.4e+02 Score=25.90 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=49.2
Q ss_pred CChHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHH
Q psy6184 8 IVPSHALASIKKKLT--NSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWA 84 (156)
Q Consensus 8 ~~~k~AvraL~KrL~--~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa 84 (156)
..|.+++..|..-++ ..++.++..+|+.+--+...++.. .+-+..+........+.+||+|..+......
T Consensus 505 ~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~-------~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 505 VTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT-------VNRIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp CCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch-------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 578899999998775 578999999998886665555421 2333333333345678999999998777654
No 99
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=40.99 E-value=71 Score=23.89 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHH
Q psy6184 10 PSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQ 81 (156)
Q Consensus 10 ~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~ 81 (156)
..+++..|.+.|.+.++.+...|+..|..+ ++.+.+..|.+++++. .|+..+...+.
T Consensus 190 ~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~------------~~~~~~~~L~~~l~d~---~vr~~a~~aL~ 246 (280)
T 1oyz_A 190 NSDIRDCFVEMLQDKNEEVRIEAIIGLSYR------------KDKRVLSVLCDELKKN---TVYDDIIEAAG 246 (280)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHT------------TCGGGHHHHHHHHTSS---SCCHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHh------------CCHhhHHHHHHHhcCc---cHHHHHHHHHH
Confidence 456677777777777787777777665432 2455667777776542 15555544443
No 100
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=39.01 E-value=1.9e+02 Score=25.02 Aligned_cols=75 Identities=9% Similarity=0.045 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhh
Q psy6184 12 HALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFR 88 (156)
Q Consensus 12 ~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~ 88 (156)
..+..|.+.+.+.++.+...++..+..+...++..+...---...+..+.+.+++. ..|+..+...+......+.
T Consensus 411 ~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~ 485 (861)
T 2bpt_A 411 QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLA 485 (861)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcc
Confidence 45667778888899999999998888888887764311111133445555555543 7899888888888887765
No 101
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=38.23 E-value=1e+02 Score=27.23 Aligned_cols=71 Identities=11% Similarity=0.030 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
++..|...|.+.++.++..|...|-.+..+.. .-...|....-+..|+.+++. .+.+|++.....|..++.
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~-~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND-KVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISF 119 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHc
Confidence 47778888999999999999887766654332 235566666778888998875 467899988888888763
No 102
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=37.12 E-value=99 Score=26.49 Aligned_cols=69 Identities=9% Similarity=0.119 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhh-ccCCcHHHHHHHHHHHHHH
Q psy6184 9 VPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELV-RGTQHEEVKAKILELIQAW 83 (156)
Q Consensus 9 ~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~-~~~~~~~Vk~kil~li~~W 83 (156)
++.+.++.|.+++...++.|+..+|+.+--+...++... ..-+..+.... .+..+.+||+|..+.....
T Consensus 461 ~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~------~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 461 NADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET------QELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp THHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT------HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH------HHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 477888888888888899999999888877766554321 23333344443 3457789999998765553
No 103
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=36.57 E-value=93 Score=28.73 Aligned_cols=69 Identities=13% Similarity=0.214 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccC--CcHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGT--QHEEVKAKILELIQA 82 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~--~~~~Vk~kil~li~~ 82 (156)
++..|..=|.++++.++..|+..+--++.. +......|.....+..|..+++.+ .+.+|.+.+++.++.
T Consensus 709 ~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ 779 (810)
T 3now_A 709 WLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA 779 (810)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHH
Confidence 345566666899999999999999998884 455577788888889999988643 356666655554433
No 104
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=36.42 E-value=29 Score=26.03 Aligned_cols=34 Identities=9% Similarity=0.249 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcchH-HHHHhhhCC
Q psy6184 70 EEVKAKILELIQAWAHAFRNSPKYRAVP-TKSWMTDKG 106 (156)
Q Consensus 70 ~~Vk~kil~li~~Wa~~F~~~~~l~~i~-~Y~~Lk~~G 106 (156)
..+++++.+|+..|...-..++. +. ++..|+.-|
T Consensus 135 ~d~~eq~~~mL~~W~~r~g~~At---~~~L~~AL~~~~ 169 (191)
T 2gf5_A 135 RNLTERVRESLRIWKNTEKENAT---VAHLVGALRSCQ 169 (191)
T ss_dssp SCSHHHHHHHHHHHHHHTTTTCC---HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHcC
Confidence 45899999999999987655554 66 888887765
No 105
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=35.21 E-value=11 Score=26.27 Aligned_cols=72 Identities=13% Similarity=0.032 Sum_probs=42.4
Q ss_pred HHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhhCCCCCcchH-HHHHhhhCCC
Q psy6184 34 LVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFRNSPKYRAVP-TKSWMTDKGF 107 (156)
Q Consensus 34 ~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~~~~~l~~i~-~Y~~Lk~~Gi 107 (156)
..+..+.+|-|.....-...-.|-+.=+..+....+..+++++..|+..|...-.+. =..+. ++..|++-|.
T Consensus 14 ~~l~~ia~~lg~dWk~LAr~Lg~s~~~I~~I~~~~~~~l~eq~~~mL~~W~~~~g~~--~Atv~~L~~aL~~~~r 86 (118)
T 2of5_H 14 SNLLSVAGRLGLDWPAVALHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAERQAGQ--PGAVGLLVQALEQSDR 86 (118)
T ss_dssp HHHHHHHHTCCTTHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSSC--SSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHcCc
Confidence 345556667676553322222444433333332224568999999999999874221 13466 8888887664
No 106
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=32.88 E-value=1.4e+02 Score=27.36 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhcCC-CHH--HHHHHH-----------------HHHHHHHHccch--hHHhhhccHHHHHHHHHhhccC
Q psy6184 10 PSHALASIKKKLTNS-NPH--IVLYAL-----------------LVLESCVKNCGN--LIHDEVGTKAFMEQMKELVRGT 67 (156)
Q Consensus 10 ~k~AvraL~KrL~~~-n~~--v~l~AL-----------------~LLe~~vkNCG~--~fh~eIask~Fl~~l~kl~~~~ 67 (156)
-+||+.|++.-|..+ +|. ..++-+ .+|++|||.|-- ++..++ +-..++.|.+++...
T Consensus 629 ~~EA~~a~~~~l~~RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~RwY~ef-s~~l~~~l~kLi~~~ 707 (754)
T 4gns_B 629 WEDAVACLRTSIVARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCRYYNYC-QIFNLQLLEKLCNEL 707 (754)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHHHTTBCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhhhccccc-CHHHHHHHHHHHHHh
Confidence 467888888877543 232 333322 257889999854 677776 566677788877654
Q ss_pred CcHHHHHHHH-------------HHHHHHHHHhhCC
Q psy6184 68 QHEEVKAKIL-------------ELIQAWAHAFRNS 90 (156)
Q Consensus 68 ~~~~Vk~kil-------------~li~~Wa~~F~~~ 90 (156)
....|+.+|+ +-+-.|-..|.+.
T Consensus 708 G~~kirs~I~~~~~~~~~i~~l~~~~l~~~~~~~~~ 743 (754)
T 4gns_B 708 GTHILRNKILLQPSIGDEIMVMIDAMLAWIADLDHT 743 (754)
T ss_dssp CHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHTCC
T ss_pred ChHHhhHHhhccccCCchHHHHHHHHHHHHHHhcCC
Confidence 4455555552 3455677777653
No 107
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=31.04 E-value=38 Score=23.67 Aligned_cols=31 Identities=13% Similarity=0.343 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q psy6184 54 KAFMEQMKELVRGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 54 k~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~ 85 (156)
+.|+..|+++.++. +.+|-+++.+||+..-+
T Consensus 10 k~FL~tLi~la~~~-~pev~~~Vr~LVq~Ll~ 40 (105)
T 2h7b_A 10 KRFLTTLQQFGNDI-SPEIGERVRTLVLGLVN 40 (105)
T ss_dssp HHHHHHHHHSHHHH-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccC-ChHHHHHHHHHHHHHHh
Confidence 78999999998753 67788888888887764
No 108
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=30.46 E-value=2.2e+02 Score=23.04 Aligned_cols=72 Identities=4% Similarity=0.020 Sum_probs=51.6
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHHHccchhHHhhhc-cHHHHHHHHHhhccCCcH---HHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKL-TNSNPHIVLYALLVLESCVKNCGNLIHDEVG-TKAFMEQMKELVRGTQHE---EVKAKILELIQAWAH 85 (156)
Q Consensus 13 AvraL~KrL-~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIa-sk~Fl~~l~kl~~~~~~~---~Vk~kil~li~~Wa~ 85 (156)
++..|.+-| .+.++.++..|+..|-.|...|... ...|. ...-+..|++++....+. +|++.....+...+.
T Consensus 171 ~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n-k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~ 247 (354)
T 3nmw_A 171 SVKALMECALEVKKESTLKSVLSALWNLSAHCTEN-KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 247 (354)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH-HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh-hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHh
Confidence 455666665 5678999999999888888756432 45555 678889999999754332 688888777776664
No 109
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=30.02 E-value=1e+02 Score=27.22 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=50.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHH-HHhhccCCcHHHHHHHHHHHHHHHHH
Q psy6184 15 ASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQM-KELVRGTQHEEVKAKILELIQAWAHA 86 (156)
Q Consensus 15 raL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l-~kl~~~~~~~~Vk~kil~li~~Wa~~ 86 (156)
--|.++|++.++++..-|+..|-.++.| ...+..+..+.-+..+ ..++.+ ++.+|+......+...+..
T Consensus 37 ~Pll~~L~S~~~~~r~~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~D-~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 37 LPVLKDLKSPDAKSRTTAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLTD-NNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHHHHHSSSCCSHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTTC-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhh
Confidence 3455679999999999999999998865 4444545555544443 344443 5788999999999988765
No 110
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=29.01 E-value=1.5e+02 Score=21.68 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHcc--ch-hHHhhhccHHHHHHHHH-hhccCCcHHHHHHHHHHHHHHH
Q psy6184 10 PSHALASIKKKLT-NSNPHIVLYALLVLESCVKNC--GN-LIHDEVGTKAFMEQMKE-LVRGTQHEEVKAKILELIQAWA 84 (156)
Q Consensus 10 ~k~AvraL~KrL~-~~n~~v~l~AL~LLe~~vkNC--G~-~fh~eIask~Fl~~l~k-l~~~~~~~~Vk~kil~li~~Wa 84 (156)
+.++|..+.-+|. .+--+-..+|-..+...+... |+ .+..++..+..-.+++. .+..-....-.+.+..+++.-.
T Consensus 48 ~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~~de~e~a~~l~~Kk~ 127 (177)
T 3e3v_A 48 HEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAEDALILYTDKLQVEKGVTLAEKLA 127 (177)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCCHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 3456666666663 555677788888888877542 33 57777777766666554 3333223334455666655544
Q ss_pred HHhhCCCCCcchH-HHHHhhhCCCCC
Q psy6184 85 HAFRNSPKYRAVP-TKSWMTDKGFKN 109 (156)
Q Consensus 85 ~~F~~~~~l~~i~-~Y~~Lk~~Gi~F 109 (156)
..++..+....-. ++..|.++|+.+
T Consensus 128 ~~~~~~~~~~~~~K~~~~L~rrGF~~ 153 (177)
T 3e3v_A 128 NRYSHDSYRNKQNKIKQSLLTKGFSY 153 (177)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHTTCCH
T ss_pred hhccCCChHHHHHHHHHHHHHCCCCH
Confidence 4444333333455 899999999864
No 111
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.79 E-value=1.8e+02 Score=21.57 Aligned_cols=23 Identities=0% Similarity=-0.016 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHH
Q psy6184 12 HALASIKKKLTNSNPHIVLYALL 34 (156)
Q Consensus 12 ~AvraL~KrL~~~n~~v~l~AL~ 34 (156)
+++..|.+.++++++.|...|+.
T Consensus 128 ~~~~~L~~~l~d~~~~vR~~a~~ 150 (280)
T 1oyz_A 128 KIVEQSQITAFDKSTNVRRATAF 150 (280)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHH
Confidence 34444444445555554444443
No 112
>2li3_A Potassium channel toxin kappa-KTX3.1; alpha/alpha motif, alpha scorpion toxin, voltage gated potas channel alpha toxin; NMR {Tityus trivittatus} PDB: 2lka_A 2lo7_A
Probab=28.41 E-value=20 Score=19.31 Aligned_cols=9 Identities=44% Similarity=1.110 Sum_probs=7.1
Q ss_pred HHHHHHccc
Q psy6184 36 LESCVKNCG 44 (156)
Q Consensus 36 Le~~vkNCG 44 (156)
-|.|+|||-
T Consensus 19 q~yclknck 27 (30)
T 2li3_A 19 QDYCLKNCR 27 (30)
T ss_dssp HHHHHHHSC
T ss_pred hHHHHhcCc
Confidence 378999994
No 113
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=28.12 E-value=32 Score=26.39 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=30.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHH
Q psy6184 16 SIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFME 58 (156)
Q Consensus 16 aL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~ 58 (156)
.-++..++.||...++ +.++..+.++++.+|++-|..+-|++
T Consensus 13 ~~r~~~~s~n~~l~~L-vk~yr~larrt~apl~rrlpKRgF~s 54 (188)
T 2zkr_o 13 VRRKEPKSQDIYLRLL-VKLYRFLARRTNSTFNQVVLKRLFMS 54 (188)
T ss_dssp -------CCCHHHHHH-HHHHHHHHHC-CCHHHHHHHHHHHSC
T ss_pred cccCCCCCCCHHHHHH-HHHHHHHHhccCCCHHHHHHHhhCCC
Confidence 4455677888888776 68889999999999999999999987
No 114
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=27.44 E-value=2.4e+02 Score=26.01 Aligned_cols=73 Identities=11% Similarity=0.027 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhh
Q psy6184 12 HALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFR 88 (156)
Q Consensus 12 ~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~ 88 (156)
.++..|.+-+.+.++.++..|+..+-.+..+ ...+..|.+.. ..-|..++++. +..++...+.-+-..+....
T Consensus 290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~g-v~~L~~Ll~s~-~~~vr~~Al~~L~kl~s~~~ 362 (810)
T 3now_A 290 GILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQG-VDILKRLYHSK-NDGIRVRALVGLCKLGSYGG 362 (810)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHH-HHHHHHHTTCS-CHHHHHHHHHHHHHHHTTTT
T ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcC-cHHHHHHHcCC-CHHHHHHHHHHHHHhccccc
Confidence 3566777778999999999999888886444 44566665554 47788888743 46777776666655554443
No 115
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=27.31 E-value=2.6e+02 Score=25.77 Aligned_cols=89 Identities=9% Similarity=0.163 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcH--HHHHHHHHHHHHHHH-----
Q psy6184 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHE--EVKAKILELIQAWAH----- 85 (156)
Q Consensus 13 AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~--~Vk~kil~li~~Wa~----- 85 (156)
++-.|..-+++.+++++-.|..+|-.+..| .....++....=+..|..++.+.+.. .+|..++..+..-..
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~ 535 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG 535 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence 566777777889999999999999999877 55667777777788888888664332 377777666666552
Q ss_pred -HhhCCCCCcchH-HHHHhh
Q psy6184 86 -AFRNSPKYRAVP-TKSWMT 103 (156)
Q Consensus 86 -~F~~~~~l~~i~-~Y~~Lk 103 (156)
.|...+-+..|. +.+.|.
T Consensus 536 ~~f~~~~~~~aI~pLv~LL~ 555 (778)
T 3opb_A 536 LIFKKYSALNAIPFLFELLP 555 (778)
T ss_dssp HHSSSSCSTTHHHHHHHTSC
T ss_pred HHcCCCccccchHHHHHHcC
Confidence 343333346677 777776
No 116
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=26.95 E-value=1.4e+02 Score=19.73 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=11.1
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6184 1 MGKAEWTIVPSHALASIKKKLTNSNPHIVLYALLVL 36 (156)
Q Consensus 1 ~~~~~~~~~~k~AvraL~KrL~~~n~~v~l~AL~LL 36 (156)
||........-..+..|..-|++.++.+...|+..|
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~L~~~~~~vR~~A~~~L 36 (131)
T 1te4_A 1 MGSSHHHHHHSSGLVPRGSHMADENKWVRRDVSTAL 36 (131)
T ss_dssp --------------------CCSSCCCSSSSCCSST
T ss_pred CCcccccccccccHHHHHHHhcCCCHHHHHHHHHHH
Confidence 566666677777788888888888887766666444
No 117
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=26.82 E-value=2.6e+02 Score=22.86 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccc--hhHHhhhccHHHHHHHHHhh---ccC---CcHHHHHHHHHHHHH
Q psy6184 11 SHALASIKKKLTNSNPHIVLYALLVLESCVKNCG--NLIHDEVGTKAFMEQMKELV---RGT---QHEEVKAKILELIQA 82 (156)
Q Consensus 11 k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG--~~fh~eIask~Fl~~l~kl~---~~~---~~~~Vk~kil~li~~ 82 (156)
|..+.+|.=-++|.++++.-.+|.+|..+++|++ ..+-.+....=|++-+..++ .++ ..-..+..+|..+-.
T Consensus 166 klvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~ 245 (321)
T 1w9c_A 166 KLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 245 (321)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHH
Confidence 5677788888899999999999999999999996 34444444444444444443 232 234555666655554
Q ss_pred HHH
Q psy6184 83 WAH 85 (156)
Q Consensus 83 Wa~ 85 (156)
-.+
T Consensus 246 ~ve 248 (321)
T 1w9c_A 246 LVE 248 (321)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 118
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=26.65 E-value=2.9e+02 Score=23.30 Aligned_cols=72 Identities=4% Similarity=0.020 Sum_probs=52.0
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHHHccchhHHhhhc-cHHHHHHHHHhhccCCcH---HHHHHHHHHHHHHHH
Q psy6184 13 ALASIKKKL-TNSNPHIVLYALLVLESCVKNCGNLIHDEVG-TKAFMEQMKELVRGTQHE---EVKAKILELIQAWAH 85 (156)
Q Consensus 13 AvraL~KrL-~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIa-sk~Fl~~l~kl~~~~~~~---~Vk~kil~li~~Wa~ 85 (156)
++..|.+-| .+.++.++..|+..|-.+...|... ..+|+ ...-+..|+.++....+. +|++.....|...+.
T Consensus 287 aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n-k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~ 363 (458)
T 3nmz_A 287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTEN-KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 363 (458)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH-HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH-HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHh
Confidence 455677765 4678999999999998888756433 45565 678888999998754332 588888877776664
No 119
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=25.87 E-value=1.5e+02 Score=26.60 Aligned_cols=48 Identities=13% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhc
Q psy6184 14 LASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVR 65 (156)
Q Consensus 14 vraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~ 65 (156)
+..|-..|.+ |.|+..|...+..++++|+..+...+ ..+++.+..++.
T Consensus 531 l~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~ 578 (963)
T 2x19_B 531 LPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLM 578 (963)
T ss_dssp HHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHH
T ss_pred HHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhc
Confidence 3444455543 88999999999999999987654332 455555555554
No 120
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=25.50 E-value=2e+02 Score=21.00 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhhCC
Q psy6184 24 SNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAWAHAFRNS 90 (156)
Q Consensus 24 ~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~~~ 90 (156)
+++.+...=|.|+=.|.-||... ++|+..|.. -+..++.-|...||+-...+..+
T Consensus 108 ~d~~el~kLl~LiLg~AV~c~~k-------e~~I~~I~~-----L~~~~Q~~im~~Iqev~~~~~~~ 162 (164)
T 1wix_A 108 ADPVELGRLLQLILGCAVNCEKK-------QEHIKNIMT-----LEESVQHVVMTAIQELMSKSGPS 162 (164)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSTH-------HHHHHHHHH-----SCHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHHHHHHHHcCCch-------HHHHHHHHc-----CCHHHHHHHHHHHHHHHcccCCC
Confidence 46666666677777788888654 677777764 35778888888998888776543
No 121
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=25.08 E-value=2.9e+02 Score=22.69 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccCCcHHHHHHHHHHHHHH
Q psy6184 9 VPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEVKAKILELIQAW 83 (156)
Q Consensus 9 ~~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~~~~~Vk~kil~li~~W 83 (156)
-..+..+.|++-|.++||.|---|+.-.--+..-..+.+ +.|++++..++.+. +.-|.--.+.++.+-
T Consensus 136 m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v------~~~~~~l~~ll~d~-n~~V~~~Al~lL~ei 203 (355)
T 3tjz_B 136 MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV------KRWVNEAQEAASSD-NIMVQYHALGLLYHV 203 (355)
T ss_dssp THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH------HTTHHHHHHHTTCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH------HHHHHHHHHHhcCC-CccHHHHHHHHHHHH
Confidence 345666777777778888777777765555544443332 46899998888653 444555555555443
No 122
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=24.42 E-value=1.6e+02 Score=26.59 Aligned_cols=73 Identities=11% Similarity=0.149 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhcc-CCcHHHHHHHHHHHHHHHHHh
Q psy6184 10 PSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRG-TQHEEVKAKILELIQAWAHAF 87 (156)
Q Consensus 10 ~k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~-~~~~~Vk~kil~li~~Wa~~F 87 (156)
-..++..|-..| + |.|+..|-..+..+.++|+..+...+ ..+++.+..++.+ ..+..++..+++.|-.-+.+.
T Consensus 544 l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 544 IPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 445666677777 2 78889999999999999988765443 4666666676654 245667777666666665544
No 123
>1t0f_C Protein E, transposon TN7 transposition protein TNSC; protein-protein complex, mixed alpha-beta, DNA binding protein; 1.85A {Escherichia coli}
Probab=22.98 E-value=41 Score=20.64 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=12.7
Q ss_pred HHHHhhhCCCCCCC
Q psy6184 98 TKSWMTDKGFKNPS 111 (156)
Q Consensus 98 ~Y~~Lk~~Gi~FP~ 111 (156)
+|+.|+..|+.|+.
T Consensus 33 ~Ye~L~~~GlI~d~ 46 (54)
T 1t0f_C 33 MHERLKGKGVIVDM 46 (54)
T ss_dssp HHHHHHHTTSBCCH
T ss_pred HHHHHHHCCceeeH
Confidence 89999999999964
No 124
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=22.39 E-value=3.1e+02 Score=25.11 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHH
Q psy6184 11 SHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIH 48 (156)
Q Consensus 11 k~AvraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh 48 (156)
..++..|-..|.+.++.|+..|-..+..++++|+..+.
T Consensus 539 ~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~ 576 (1049)
T 3m1i_C 539 RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFV 576 (1049)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666778888999999999999999999997763
No 125
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=22.14 E-value=1.9e+02 Score=19.65 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=26.6
Q ss_pred HHHHHHhhccCCcHHHHHHHHHHHHHHHHHhhCCC
Q psy6184 57 MEQMKELVRGTQHEEVKAKILELIQAWAHAFRNSP 91 (156)
Q Consensus 57 l~~l~kl~~~~~~~~Vk~kil~li~~Wa~~F~~~~ 91 (156)
...+.+.+.+.++.+|++|--+|+.....+....+
T Consensus 58 Fa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~~~~~ 92 (95)
T 1ug2_A 58 FSVISQQLGNKTPVEVSHRFRELMQLFHTACESGP 92 (95)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 34477778777889999999999988877655443
No 126
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=21.72 E-value=1.6e+02 Score=23.83 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=38.4
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHH-HHHHHccchhHHhhhccHHHHHH--HHHhh---ccCCcHHHHHHHHHHHHHHHH
Q psy6184 14 LASIKKKLT--NSNPHIVLYALLVL-ESCVKNCGNLIHDEVGTKAFMEQ--MKELV---RGTQHEEVKAKILELIQAWAH 85 (156)
Q Consensus 14 vraL~KrL~--~~n~~v~l~AL~LL-e~~vkNCG~~fh~eIask~Fl~~--l~kl~---~~~~~~~Vk~kil~li~~Wa~ 85 (156)
+..|.+.|. ..++..++-+|.-| +.+.-+ .+.|.+ +-+.+ ..+.+.+|+..+..||..|..
T Consensus 6 l~~~~~~L~k~~~~~~~~l~~L~~L~~~~~it-----------~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~WK~ 74 (309)
T 1pqv_S 6 VLVHVKNLEKNKSNDAAVLEILHVLDKEFVPT-----------EKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD 74 (309)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHhcCCCC-----------HHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344555553 34566666666666 433222 222222 22222 234678999999999999999
Q ss_pred HhhC
Q psy6184 86 AFRN 89 (156)
Q Consensus 86 ~F~~ 89 (156)
....
T Consensus 75 ~v~~ 78 (309)
T 1pqv_S 75 AINK 78 (309)
T ss_pred HHHH
Confidence 8764
No 127
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=21.32 E-value=4.8e+02 Score=23.99 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHccchhHHhhhccHHHHHHHHHhhccC-CcHHHHHHHHHHHHHHHH
Q psy6184 14 LASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGT-QHEEVKAKILELIQAWAH 85 (156)
Q Consensus 14 vraL~KrL~~~n~~v~l~AL~LLe~~vkNCG~~fh~eIask~Fl~~l~kl~~~~-~~~~Vk~kil~li~~Wa~ 85 (156)
+..|.+=+.+.++.++..|...|-.|..........-+...++++.+..++.+. .+.+++.+.+.++...+.
T Consensus 656 L~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 656 FNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 677888888999999999988887775444433344444458999999999874 789999999999999996
Done!