RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6184
(156 letters)
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 145
Score = 101 bits (252), Expect = 8e-29
Identities = 50/102 (49%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 10 PSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQH 69
P +A A+IKKK+ + NPH Y+LLVLES VKNCG +H+EV TK E + T H
Sbjct: 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPH 99
Query: 70 EEVKAKILELIQAWAHAFRNSPKYRAVP-TKSWMTDKGFKNP 110
E V+ K+LEL+Q WA+AFR+S KY+A+ T + + KG P
Sbjct: 100 ENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKGHTFP 141
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 100 bits (251), Expect = 1e-28
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 10 PSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQ- 68
P+HA + K+ + LYAL VLE C+ +CG H EV F+ ++ +++
Sbjct: 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYL 95
Query: 69 ----HEEVKAKILELIQAWAHAFRNSPKYRAV 96
+VK +++E++ +W F K R
Sbjct: 96 GSWATGKVKGRVIEILFSWTVWFPEDIKIRDA 127
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 98.4 bits (245), Expect = 1e-27
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 10 PSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQ- 68
P A+ + K+ + L AL VLE+C+KNCG H+EVG F+ ++ ++V
Sbjct: 37 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYL 96
Query: 69 ----HEEVKAKILELIQAWAHAFRNSPKYRAVPTKSWMTDKG--FKNPSKSSDS 116
E+VK K++EL+ +W A K + + +G +P D
Sbjct: 97 GDRVSEKVKTKVIELLYSWTMALPEEAKIKD--AYHMLKRQGIVQSDPPIPVDR 148
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 153
Score = 95.3 bits (237), Expect = 2e-26
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 10 PSHALASIKKKLTNS-NPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQM---KELVR 65
P AL ++KK++ + N H V+ AL VLE+CVKNCG+ H V ++ F+E + L +
Sbjct: 47 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPK 106
Query: 66 GTQHEEVKAKILELIQAWAHAFRNSPKYRAVP-TKSWMTDKGFKNP 110
V K+L LIQ+WA AFR+SP V + KG + P
Sbjct: 107 NNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIYEDLRRKGLEFP 152
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 94.5 bits (235), Expect = 4e-26
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 10 PSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQ- 68
P A + K+ + + AL VLE+C+K+CG HDEVG F+ ++ ++V
Sbjct: 43 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYL 102
Query: 69 ----HEEVKAKILELIQAWAHAFRNSPKYRAV 96
E+VK KILEL+ +W K
Sbjct: 103 GSRTSEKVKNKILELLYSWTVGLPEEVKIAEA 134
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 144
Score = 32.3 bits (73), Expect = 0.010
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 11 SHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHE 70
+ + +I+ ++ P LYA L+S KN G+ + + +
Sbjct: 42 QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSR--NLFNLYKRTYLLVDN 99
Query: 71 EVKAKILELIQAW 83
+ K++ + + W
Sbjct: 100 TTRTKLINMFKLW 112
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 32.1 bits (72), Expect = 0.024
Identities = 17/144 (11%), Positives = 52/144 (36%), Gaps = 9/144 (6%)
Query: 13 ALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKELVRGTQHEEV 72
A+ S K + NP I A+ + G + D++ T+ E +++ ++
Sbjct: 84 AVNSFVKDCEDPNPLIRALAVRTM-------GCIRVDKI-TEYLCEPLRKCLKDEDPYVR 135
Query: 73 KAKILELIQAWAHAFRNSPKYRAVPT-KSWMTDKGFKNPSKSSDSLGLELQIFRICHIHF 131
K + + + + + + + + D + + +L + ++
Sbjct: 136 KTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLD 195
Query: 132 SEIKGIDQIVDSSSSVALWLRHFA 155
+ I++++ + + W + F
Sbjct: 196 LNPQNINKLLTALNECTEWGQIFI 219
>d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium
tuberculosis, HbO [TaxId: 1773]}
Length = 126
Score = 26.9 bits (59), Expect = 0.59
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 56 FMEQMKELVRGTQHEEVKAKILELIQAWAHAFRNSP 91
+ + T +E + ++L+ ++ AH+ NSP
Sbjct: 90 MHTAVASIDSETLDDEHRRELLDYLEMAAHSLVNSP 125
>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 170
Score = 25.6 bits (56), Expect = 2.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 98 TKSWMTDKGFKNPSKSSDSLGLELQIFRICHIHFSEIKGIDQIV 141
TK W+T +P+ + S+GL++ +F IK + Q +
Sbjct: 58 TKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQPL 101
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 26.3 bits (57), Expect = 2.1
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 16 SIKKKLTNSNPHIVLYALLVLESCVKN 42
+IK L + NP + AL + + V +
Sbjct: 107 AIKNDLASRNPTFMGLALHCI-ANVGS 132
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 25.4 bits (55), Expect = 2.5
Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 3 KAEWTIVPSHALASIKKKLTNSNPHIVLYALLVLESCVKNCGNLIHDEVGTKAFMEQMKE 62
K + + P++ + K+ + V+ +S +K+ ++ ++ G + K
Sbjct: 53 KNQVAMNPTNTVFDAKRLIGRRFDDAVV------QSDMKHWPFMVVNDAGRPKVQVEYKG 106
Query: 63 LVRGTQHEEVKAKILELIQAWAHAFRNSPKYRAV 96
+ EEV + +L ++ A A+ AV
Sbjct: 107 ETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAV 140
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
chain {Escherichia coli [TaxId: 562]}
Length = 509
Score = 25.8 bits (56), Expect = 2.6
Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 50 EVGTKAF-MEQMKELVRGTQHEEV-----KAKILELIQAWAHAFRNSPKYRAVP 97
+V + +++ ++ V ++ + ++ W A P+YR +P
Sbjct: 298 DVFLDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMAMEWKLALPLHPEYRTLP 351
>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722
{Novosphingobium aromaticivorans [TaxId: 48935]}
Length = 153
Score = 24.3 bits (52), Expect = 6.3
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 57 MEQMKELVRGTQHEEVKAKILELIQAWAHA 86
M+ + L + E + +I ELI +
Sbjct: 1 MDDLTNLAARLRLLEDREEIRELIARYGPL 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.132 0.406
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 585,855
Number of extensions: 23892
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 18
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)