Query psy6185
Match_columns 79
No_of_seqs 101 out of 378
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 19:53:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vu4_A KMHSV2; beta-propeller 99.3 6.6E-12 2.3E-16 88.7 9.3 74 1-78 23-96 (355)
2 3zwl_B Eukaryotic translation 97.5 0.0013 4.5E-08 43.9 9.9 74 2-78 37-111 (369)
3 4ggc_A P55CDC, cell division c 97.5 0.0014 4.9E-08 43.2 9.4 73 2-78 30-104 (318)
4 3jrp_A Fusion protein of prote 97.4 0.0011 3.7E-08 44.6 7.9 71 2-74 16-90 (379)
5 3lrv_A PRE-mRNA-splicing facto 97.4 0.0018 6E-08 44.5 9.1 73 1-76 174-248 (343)
6 3mmy_A MRNA export factor; mRN 97.3 0.0034 1.2E-07 41.9 10.0 75 1-77 43-122 (368)
7 4gqb_B Methylosome protein 50; 97.3 0.0021 7.1E-08 45.3 9.3 74 2-78 132-207 (344)
8 2ynn_A Coatomer subunit beta'; 97.3 0.0026 8.8E-08 43.2 9.0 75 2-78 145-223 (304)
9 2ynn_A Coatomer subunit beta'; 97.2 0.0042 1.4E-07 42.1 9.9 74 2-78 18-92 (304)
10 3f3f_A Nucleoporin SEH1; struc 97.2 0.0051 1.8E-07 40.2 9.4 70 2-73 16-91 (351)
11 4ery_A WD repeat-containing pr 97.1 0.0065 2.2E-07 40.7 9.9 74 2-77 154-228 (312)
12 3f3f_A Nucleoporin SEH1; struc 97.1 0.0039 1.3E-07 40.8 8.5 73 2-76 62-147 (351)
13 3vl1_A 26S proteasome regulato 97.1 0.0071 2.4E-07 41.7 10.2 74 2-78 144-218 (420)
14 3mkq_A Coatomer beta'-subunit; 97.1 0.0053 1.8E-07 46.2 10.1 74 2-78 18-92 (814)
15 4ery_A WD repeat-containing pr 97.1 0.0073 2.5E-07 40.4 9.9 73 2-77 28-101 (312)
16 3zwl_B Eukaryotic translation 97.1 0.006 2E-07 40.7 9.2 75 2-78 180-255 (369)
17 3mmy_A MRNA export factor; mRN 97.1 0.0048 1.6E-07 41.1 8.7 72 2-77 91-165 (368)
18 3ow8_A WD repeat-containing pr 97.1 0.0075 2.6E-07 41.6 9.9 75 1-78 210-285 (321)
19 4a11_B DNA excision repair pro 97.0 0.0091 3.1E-07 40.5 9.8 74 2-77 48-136 (408)
20 2aq5_A Coronin-1A; WD40 repeat 97.0 0.0094 3.2E-07 41.5 10.1 75 2-78 86-169 (402)
21 1r5m_A SIR4-interacting protei 97.0 0.0092 3.2E-07 40.5 9.5 73 2-78 113-186 (425)
22 1gxr_A ESG1, transducin-like e 96.9 0.011 3.9E-07 38.9 9.6 75 2-78 102-178 (337)
23 4h5i_A Guanine nucleotide-exch 96.9 0.0062 2.1E-07 42.8 8.7 68 2-71 274-342 (365)
24 2ymu_A WD-40 repeat protein; u 96.9 0.0079 2.7E-07 43.4 9.2 70 2-76 21-91 (577)
25 3vu4_A KMHSV2; beta-propeller 96.9 0.011 3.8E-07 41.2 9.5 69 2-73 200-272 (355)
26 3gre_A Serine/threonine-protei 96.9 0.015 5.1E-07 40.6 10.1 74 2-77 219-297 (437)
27 1gxr_A ESG1, transducin-like e 96.8 0.018 6.1E-07 38.0 9.9 74 2-78 146-220 (337)
28 1erj_A Transcriptional repress 96.8 0.015 5.1E-07 40.9 9.9 73 2-77 128-201 (393)
29 3k26_A Polycomb protein EED; W 96.7 0.014 4.6E-07 39.0 8.8 74 2-78 74-153 (366)
30 1k8k_C P40, ARP2/3 complex 41 96.7 0.016 5.4E-07 39.0 9.1 75 2-78 147-239 (372)
31 4g56_B MGC81050 protein; prote 96.7 0.0078 2.7E-07 42.1 7.6 73 2-77 144-218 (357)
32 4aez_A CDC20, WD repeat-contai 96.7 0.021 7.1E-07 39.9 9.8 76 2-78 222-299 (401)
33 1sq9_A Antiviral protein SKI8; 96.7 0.022 7.6E-07 38.8 9.5 76 1-78 190-273 (397)
34 3dwl_C Actin-related protein 2 96.6 0.0032 1.1E-07 43.0 5.3 72 1-74 15-88 (377)
35 3ow8_A WD repeat-containing pr 96.6 0.018 6.1E-07 39.7 9.1 73 2-77 169-242 (321)
36 2aq5_A Coronin-1A; WD40 repeat 96.6 0.018 6E-07 40.1 9.0 74 2-78 136-213 (402)
37 1yfq_A Cell cycle arrest prote 96.6 0.034 1.2E-06 37.0 10.0 75 2-78 198-288 (342)
38 1vyh_C Platelet-activating fac 96.6 0.017 5.9E-07 41.0 8.9 73 2-77 113-186 (410)
39 1pgu_A Actin interacting prote 96.6 0.024 8.3E-07 40.7 9.7 73 2-78 211-289 (615)
40 3dw8_B Serine/threonine-protei 96.5 0.014 4.8E-07 40.5 8.0 72 2-75 33-129 (447)
41 2pm7_B Protein transport prote 96.5 0.033 1.1E-06 37.5 9.7 70 2-73 14-87 (297)
42 3sfz_A APAF-1, apoptotic pepti 96.5 0.023 7.8E-07 45.1 10.0 74 2-78 620-694 (1249)
43 2pm9_A Protein WEB1, protein t 96.5 0.024 8.3E-07 38.7 8.7 75 2-78 219-300 (416)
44 3vl1_A 26S proteasome regulato 96.4 0.02 6.9E-07 39.4 8.3 71 2-74 252-324 (420)
45 1got_B GT-beta; complex (GTP-b 96.4 0.038 1.3E-06 37.9 9.7 73 2-77 189-262 (340)
46 1sq9_A Antiviral protein SKI8; 96.4 0.032 1.1E-06 38.0 9.1 74 2-78 238-328 (397)
47 3dw8_B Serine/threonine-protei 96.4 0.028 9.6E-07 38.9 8.9 72 2-76 231-320 (447)
48 1r5m_A SIR4-interacting protei 96.4 0.039 1.3E-06 37.4 9.4 73 2-78 252-325 (425)
49 2vdu_B TRNA (guanine-N(7)-)-me 96.4 0.028 9.4E-07 40.0 9.0 74 2-78 200-277 (450)
50 1pgu_A Actin interacting prote 96.4 0.027 9.3E-07 40.4 8.9 73 2-77 493-578 (615)
51 3sfz_A APAF-1, apoptotic pepti 96.4 0.02 6.9E-07 45.4 8.8 75 2-77 662-737 (1249)
52 3dwl_C Actin-related protein 2 96.4 0.0088 3E-07 40.8 6.0 72 2-75 151-239 (377)
53 1vyh_C Platelet-activating fac 96.3 0.034 1.2E-06 39.4 9.0 73 2-77 155-228 (410)
54 3mkq_A Coatomer beta'-subunit; 96.2 0.024 8.1E-07 42.6 8.0 76 1-78 144-223 (814)
55 3jro_A Fusion protein of prote 96.2 0.018 6.3E-07 44.4 7.5 71 2-74 14-88 (753)
56 3lrv_A PRE-mRNA-splicing facto 96.2 0.042 1.4E-06 37.6 8.6 72 2-76 130-205 (343)
57 3bg1_A Protein SEC13 homolog; 96.2 0.022 7.6E-07 38.8 7.2 70 2-73 18-91 (316)
58 4gga_A P55CDC, cell division c 96.1 0.048 1.6E-06 38.4 9.1 73 2-78 110-184 (420)
59 1got_B GT-beta; complex (GTP-b 96.1 0.028 9.7E-07 38.6 7.7 73 2-77 231-306 (340)
60 2pbi_B Guanine nucleotide-bind 96.1 0.048 1.6E-06 37.9 8.9 73 2-77 159-234 (354)
61 4aow_A Guanine nucleotide-bind 96.1 0.074 2.5E-06 35.2 9.5 71 2-77 220-291 (340)
62 1k8k_C P40, ARP2/3 complex 41 96.1 0.056 1.9E-06 36.2 8.9 72 1-74 12-85 (372)
63 4e54_B DNA damage-binding prot 96.1 0.039 1.3E-06 39.1 8.4 71 2-74 124-198 (435)
64 4a11_B DNA excision repair pro 96.0 0.083 2.9E-06 35.6 9.3 73 2-76 191-280 (408)
65 3odt_A Protein DOA1; ubiquitin 96.0 0.061 2.1E-06 35.0 8.4 64 2-69 64-130 (313)
66 4ggc_A P55CDC, cell division c 95.9 0.18 6.1E-06 32.9 10.6 75 2-76 155-234 (318)
67 3odt_A Protein DOA1; ubiquitin 95.9 0.051 1.7E-06 35.4 7.9 73 2-78 230-302 (313)
68 2pbi_B Guanine nucleotide-bind 95.9 0.036 1.2E-06 38.5 7.3 73 2-77 245-320 (354)
69 1nr0_A Actin interacting prote 95.9 0.085 2.9E-06 39.4 9.7 73 2-77 195-275 (611)
70 3k26_A Polycomb protein EED; W 95.8 0.034 1.2E-06 37.0 6.8 69 2-72 290-366 (366)
71 2oaj_A Protein SNI1; WD40 repe 95.8 0.067 2.3E-06 42.6 9.5 70 2-77 22-93 (902)
72 2ymu_A WD-40 repeat protein; u 95.7 0.1 3.6E-06 37.4 9.4 71 2-77 472-543 (577)
73 1erj_A Transcriptional repress 95.7 0.045 1.6E-06 38.4 7.4 74 1-77 68-159 (393)
74 2pm9_A Protein WEB1, protein t 95.7 0.063 2.1E-06 36.7 7.9 76 1-78 117-203 (416)
75 4gga_A P55CDC, cell division c 95.7 0.079 2.7E-06 37.3 8.7 77 2-78 235-316 (420)
76 4g56_B MGC81050 protein; prote 95.7 0.076 2.6E-06 37.0 8.3 75 2-78 99-176 (357)
77 2xzm_R RACK1; ribosome, transl 95.6 0.17 5.6E-06 34.6 9.7 74 2-77 26-112 (343)
78 4gqb_B Methylosome protein 50; 95.5 0.12 4.1E-06 36.2 8.9 75 2-78 87-164 (344)
79 3iz6_a 40S ribosomal protein R 95.5 0.15 5.1E-06 35.5 9.4 74 2-77 210-285 (380)
80 3frx_A Guanine nucleotide-bind 95.5 0.18 6.2E-06 34.2 9.6 69 2-73 70-139 (319)
81 3fm0_A Protein CIAO1; WDR39,SG 95.5 0.12 4.1E-06 35.5 8.7 70 2-73 66-137 (345)
82 3ei3_B DNA damage-binding prot 95.5 0.13 4.4E-06 35.2 8.8 69 2-73 78-151 (383)
83 3gre_A Serine/threonine-protei 95.4 0.13 4.5E-06 35.7 8.7 75 2-78 116-207 (437)
84 1yfq_A Cell cycle arrest prote 95.4 0.046 1.6E-06 36.3 6.1 66 2-72 61-131 (342)
85 2xyi_A Probable histone-bindin 95.3 0.093 3.2E-06 37.2 7.9 69 2-72 282-353 (430)
86 3jrp_A Fusion protein of prote 95.3 0.11 3.7E-06 34.7 7.9 70 2-73 60-135 (379)
87 3v7d_B Cell division control p 95.3 0.16 5.5E-06 35.6 9.1 70 2-76 315-385 (464)
88 3ei3_B DNA damage-binding prot 95.3 0.043 1.5E-06 37.6 5.9 72 2-75 209-285 (383)
89 2xzm_R RACK1; ribosome, transl 95.3 0.26 8.8E-06 33.6 9.9 69 2-73 81-150 (343)
90 3fm0_A Protein CIAO1; WDR39,SG 95.2 0.18 6.2E-06 34.6 9.0 72 2-75 110-184 (345)
91 1p22_A F-BOX/WD-repeat protein 95.2 0.16 5.6E-06 35.7 8.9 69 2-77 138-207 (435)
92 3iz6_a 40S ribosomal protein R 95.1 0.19 6.4E-06 35.0 8.8 74 1-77 253-334 (380)
93 4e54_B DNA damage-binding prot 95.0 0.092 3.1E-06 37.2 7.1 69 2-74 214-284 (435)
94 3i2n_A WD repeat-containing pr 95.0 0.1 3.5E-06 34.6 6.9 71 2-74 23-101 (357)
95 3i2n_A WD repeat-containing pr 95.0 0.19 6.5E-06 33.3 8.2 72 4-77 124-204 (357)
96 3frx_A Guanine nucleotide-bind 94.8 0.057 2E-06 36.8 5.3 69 2-73 242-318 (319)
97 3dm0_A Maltose-binding peripla 94.7 0.28 9.6E-06 36.9 9.4 69 2-73 435-504 (694)
98 4aow_A Guanine nucleotide-bind 94.7 0.18 6.1E-06 33.3 7.4 76 3-78 134-210 (340)
99 4aez_A CDC20, WD repeat-contai 94.3 0.44 1.5E-05 33.1 9.2 73 2-78 98-171 (401)
100 1nr0_A Actin interacting prote 94.2 0.49 1.7E-05 35.2 9.6 68 2-72 23-90 (611)
101 2hes_X YDR267CP; beta-propelle 94.2 0.22 7.4E-06 34.0 7.1 70 2-73 112-185 (330)
102 3dm0_A Maltose-binding peripla 94.1 0.5 1.7E-05 35.5 9.6 74 2-78 522-598 (694)
103 1l0q_A Surface layer protein; 94.1 0.72 2.5E-05 31.3 9.6 74 2-78 36-111 (391)
104 3bg1_A Protein SEC13 homolog; 94.0 0.68 2.3E-05 31.3 9.4 68 2-71 217-292 (316)
105 2hes_X YDR267CP; beta-propelle 93.9 0.23 7.9E-06 33.9 6.9 71 2-72 158-230 (330)
106 2ovr_B FBW7, F-BOX/WD repeat p 93.9 0.32 1.1E-05 34.1 7.7 66 8-78 328-397 (445)
107 3v7d_B Cell division control p 93.8 0.39 1.3E-05 33.6 8.1 71 2-75 167-239 (464)
108 2xyi_A Probable histone-bindin 93.8 0.59 2E-05 33.0 9.1 70 2-72 236-309 (430)
109 1l0q_A Surface layer protein; 93.7 1 3.5E-05 30.5 9.9 72 2-78 204-281 (391)
110 2vdu_B TRNA (guanine-N(7)-)-me 93.6 0.46 1.6E-05 33.6 8.2 27 1-27 8-34 (450)
111 1pby_B Quinohemoprotein amine 93.0 0.89 3E-05 29.7 8.4 72 2-78 245-316 (337)
112 2ojh_A Uncharacterized protein 92.7 0.55 1.9E-05 29.7 6.9 73 2-75 177-261 (297)
113 4h5i_A Guanine nucleotide-exch 92.6 0.69 2.4E-05 32.2 7.8 73 1-73 180-255 (365)
114 2ovr_B FBW7, F-BOX/WD repeat p 92.6 0.93 3.2E-05 31.7 8.4 70 2-78 284-354 (445)
115 3jro_A Fusion protein of prote 92.5 0.6 2.1E-05 35.9 8.0 70 2-73 58-133 (753)
116 3bws_A Protein LP49; two-domai 92.5 1.8 6.1E-05 29.7 9.8 75 2-78 174-249 (433)
117 2oit_A Nucleoporin 214KDA; NH2 92.4 0.98 3.4E-05 32.7 8.7 67 2-71 154-222 (434)
118 1nir_A Nitrite reductase; hemo 92.4 1.2 4.1E-05 33.4 9.4 78 2-79 425-521 (543)
119 1jmx_B Amine dehydrogenase; ox 92.4 1.1 3.8E-05 29.5 8.2 72 3-79 260-332 (349)
120 1p22_A F-BOX/WD-repeat protein 92.3 1.5 5.2E-05 30.7 9.3 71 2-78 218-291 (435)
121 2oaj_A Protein SNI1; WD40 repe 92.3 0.7 2.4E-05 36.8 8.3 25 2-26 493-518 (902)
122 2j04_A TAU60, YPL007P, hypothe 92.2 0.39 1.3E-05 37.8 6.7 68 2-74 134-213 (588)
123 2ojh_A Uncharacterized protein 91.2 1.1 3.9E-05 28.2 7.1 71 2-73 46-120 (297)
124 2j04_B YDR362CP, TAU91; beta p 91.0 1.1 3.8E-05 33.6 7.9 70 2-74 271-344 (524)
125 3bws_A Protein LP49; two-domai 90.8 0.91 3.1E-05 31.2 6.7 75 2-78 127-206 (433)
126 2oit_A Nucleoporin 214KDA; NH2 90.7 0.79 2.7E-05 33.2 6.6 73 2-76 97-185 (434)
127 4gq1_A NUP37; propeller, trans 90.5 0.59 2E-05 32.7 5.6 72 2-76 141-222 (393)
128 3scy_A Hypothetical bacterial 89.9 1.9 6.6E-05 29.1 7.6 69 2-73 54-130 (361)
129 2pm7_B Protein transport prote 89.8 3.1 0.00011 27.6 9.4 70 2-73 58-133 (297)
130 2nwa_A Hypothetical protein YT 89.6 0.23 7.8E-06 30.6 2.5 34 12-48 24-60 (88)
131 2hqs_A Protein TOLB; TOLB, PAL 89.2 4.5 0.00015 28.6 10.1 72 2-75 183-259 (415)
132 3u4y_A Uncharacterized protein 89.2 3.4 0.00012 27.2 8.4 75 2-78 44-123 (331)
133 2j04_B YDR362CP, TAU91; beta p 88.7 1.2 4.1E-05 33.4 6.4 66 2-72 360-428 (524)
134 2j04_A TAU60, YPL007P, hypothe 88.4 1.9 6.5E-05 34.0 7.5 66 1-75 186-257 (588)
135 1ri6_A Putative isomerase YBHE 87.0 4.6 0.00016 26.2 8.2 68 2-70 42-113 (343)
136 4gq1_A NUP37; propeller, trans 86.3 0.62 2.1E-05 32.6 3.4 24 2-25 364-387 (393)
137 1nir_A Nitrite reductase; hemo 83.2 6.4 0.00022 29.3 7.9 75 2-78 183-263 (543)
138 1xip_A Nucleoporin NUP159; bet 83.0 6.6 0.00023 28.8 7.8 66 2-74 92-157 (388)
139 2hqs_A Protein TOLB; TOLB, PAL 81.0 12 0.00042 26.3 8.8 72 2-75 271-347 (415)
140 2ecf_A Dipeptidyl peptidase IV 80.1 16 0.00054 27.1 10.0 71 2-76 113-185 (741)
141 1k32_A Tricorn protease; prote 80.0 12 0.0004 29.7 8.7 72 2-74 383-463 (1045)
142 3u4y_A Uncharacterized protein 78.5 11 0.00039 24.5 8.6 73 2-75 132-210 (331)
143 3hfq_A Uncharacterized protein 76.1 14 0.00049 24.4 7.5 73 2-75 244-322 (347)
144 1xip_A Nucleoporin NUP159; bet 74.7 6.3 0.00022 28.9 5.5 66 2-72 42-115 (388)
145 2ecf_A Dipeptidyl peptidase IV 74.5 15 0.00053 27.2 7.6 26 2-27 41-73 (741)
146 1xfd_A DIP, dipeptidyl aminope 74.1 10 0.00036 28.0 6.5 69 2-75 65-146 (723)
147 1qks_A Cytochrome CD1 nitrite 73.6 19 0.00065 27.4 8.1 75 2-78 201-281 (567)
148 2w18_A PALB2, fancn, partner a 72.4 9.1 0.00031 28.2 5.9 23 56-78 196-218 (356)
149 3vgz_A Uncharacterized protein 72.0 18 0.00061 23.6 9.4 75 2-78 189-268 (353)
150 2oiz_A Aromatic amine dehydrog 71.0 20 0.00068 24.8 7.2 68 3-78 259-342 (361)
151 3vgz_A Uncharacterized protein 68.4 22 0.00074 23.2 10.0 76 2-78 93-179 (353)
152 1pby_B Quinohemoprotein amine 67.0 22 0.00076 22.8 8.5 70 2-77 86-168 (337)
153 3hfq_A Uncharacterized protein 66.2 25 0.00087 23.2 8.5 25 2-26 90-116 (347)
154 3ei3_A DNA damage-binding prot 63.9 29 0.00099 29.0 7.7 64 4-74 838-915 (1158)
155 1xfd_A DIP, dipeptidyl aminope 62.3 44 0.0015 24.6 7.8 25 2-26 118-142 (723)
156 2z3z_A Dipeptidyl aminopeptida 61.8 45 0.0015 24.5 9.1 70 3-74 361-437 (706)
157 2z3z_A Dipeptidyl aminopeptida 61.7 34 0.0012 25.2 7.2 65 2-72 86-150 (706)
158 1z68_A Fibroblast activation p 61.0 23 0.00077 26.3 6.1 67 2-75 64-142 (719)
159 3pe7_A Oligogalacturonate lyas 59.4 36 0.0012 22.6 7.1 70 3-75 41-114 (388)
160 2mad_H Methylamine dehydrogena 55.8 50 0.0017 23.2 9.0 72 3-78 272-356 (373)
161 2w18_A PALB2, fancn, partner a 54.7 60 0.0021 23.8 8.4 73 3-76 184-273 (356)
162 1jmx_B Amine dehydrogenase; ox 53.8 42 0.0014 21.7 8.6 74 2-77 4-79 (349)
163 1hym_B CMTI-V, hydrolyzed cucu 52.5 14 0.00048 17.5 2.5 16 60-75 2-17 (26)
164 1z68_A Fibroblast activation p 49.4 68 0.0023 23.7 7.0 25 2-26 114-138 (719)
165 2oiz_A Aromatic amine dehydrog 47.3 66 0.0023 22.1 7.3 77 2-78 54-146 (361)
166 2gop_A Trilobed protease; beta 44.6 63 0.0022 21.1 8.0 17 2-18 63-79 (347)
167 1ri6_A Putative isomerase YBHE 43.6 62 0.0021 20.7 9.4 69 2-71 133-208 (343)
168 3scy_A Hypothetical bacterial 41.6 74 0.0025 21.0 8.5 72 2-74 159-244 (361)
169 3fvz_A Peptidyl-glycine alpha- 34.8 1E+02 0.0034 20.5 7.8 18 60-77 265-282 (329)
170 4a5s_A Dipeptidyl peptidase 4 34.6 1.5E+02 0.005 22.4 7.6 68 3-75 67-144 (740)
171 1zso_A Hypothetical protein; s 34.2 78 0.0027 20.8 4.8 46 3-49 115-161 (164)
172 3c5m_A Oligogalacturonate lyas 33.9 1E+02 0.0034 20.3 6.5 72 3-75 193-276 (396)
173 3lyv_A Ribosome-associated fac 33.7 58 0.002 18.5 3.6 29 19-47 29-57 (66)
174 3chb_D Cholera toxin; toxin/re 33.0 25 0.00087 21.5 2.0 17 63-79 84-100 (104)
175 2hc5_A ORF 99, hypothetical pr 32.1 30 0.001 21.6 2.3 16 64-79 70-85 (117)
176 3ka5_A Ribosome-associated pro 31.6 62 0.0021 18.3 3.4 29 19-47 28-56 (65)
177 3pp4_P B-lymphocyte antigen CD 30.4 12 0.0004 17.8 0.1 11 22-32 2-12 (25)
178 3f7f_A Nucleoporin NUP120; nuc 29.8 91 0.0031 25.2 5.3 36 41-78 221-256 (729)
179 3k2t_A LMO2511 protein; lister 28.9 61 0.0021 17.7 3.0 28 19-46 28-55 (57)
180 1k32_A Tricorn protease; prote 28.0 2.2E+02 0.0076 22.4 8.5 70 2-76 342-413 (1045)
181 1ltr_D ETB-R2, heat-labIle ent 27.8 35 0.0012 21.1 2.0 17 63-79 83-99 (113)
182 3o4h_A Acylamino-acid-releasin 27.2 1.7E+02 0.0059 20.9 7.5 70 2-75 154-230 (582)
183 3c75_H MADH, methylamine dehyd 27.1 1.7E+02 0.0059 21.4 6.1 73 3-79 324-409 (426)
184 1b44_D ETB-POL, protein (B-POL 26.6 37 0.0013 21.5 2.0 17 63-79 83-99 (129)
185 3o4h_A Acylamino-acid-releasin 26.6 1.8E+02 0.0061 20.8 7.6 61 5-72 253-315 (582)
186 3no2_A Uncharacterized protein 25.1 1.5E+02 0.0052 19.5 9.0 72 3-78 130-201 (276)
187 2xdw_A Prolyl endopeptidase; a 21.7 2.5E+02 0.0086 20.9 7.0 25 2-26 129-159 (710)
188 4fhn_B Nucleoporin NUP120; pro 21.1 60 0.0021 26.6 2.8 28 49-78 247-274 (1139)
189 1mda_H Methylamine dehydrogena 20.3 2.4E+02 0.0081 20.0 7.4 73 3-79 269-353 (368)
No 1
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.33 E-value=6.6e-12 Score=88.73 Aligned_cols=74 Identities=11% Similarity=0.137 Sum_probs=63.2
Q ss_pred CeeeccCCCCEEEEEcCCceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 1 MCSVPLKGLLSLSVGTKSGYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 1 ~~~~fNQD~sc~~vgt~~GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
.|++||+|++.+++|.++|++||++++ .+..+..+.+++.+++++++++++|++|+.+ ++++|||.++++.+.+
T Consensus 23 ~~v~fs~dg~~la~g~~~~~~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~v~iWd~~~~~~~~~ 96 (355)
T 3vu4_A 23 TDYEFNQDQSCLILSTLKSFEIYNVHP---VAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK-EVVHIWDDVKKQDVSR 96 (355)
T ss_dssp CEEEECTTSSEEEEECSSEEEEEEETT---EEEEEEEECSCCCEEEECTTSSEEEEECSST-TEEEEEETTTTEEEEE
T ss_pred EEEEECCCCCEEEEEcCCEEEEEecCC---cceeeeeecCCeEEEEEcCCCCEEEEEECCc-cEEEEEECCCCcEEEE
Confidence 489999999999999999999999654 4555555556899999999999999999654 7999999999988765
No 2
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.0013 Score=43.93 Aligned_cols=74 Identities=7% Similarity=-0.139 Sum_probs=53.5
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
|+.|++|+..+++|..+| .+||+.+.-++ ...+....+.+.-+..--..+++|..+ ..+.++|||..+++.+..
T Consensus 37 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~ 111 (369)
T 3zwl_B 37 QVKYNKEGDLLFSCSKDSSASVWYSLNGER-LGTLDGHTGTIWSIDVDCFTKYCVTGS--ADYSIKLWDVSNGQCVAT 111 (369)
T ss_dssp EEEECTTSCEEEEEESSSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEE--TTTEEEEEETTTCCEEEE
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEeCCCchh-hhhhhhcCCcEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCcEEEE
Confidence 789999999999999886 89998654222 223444566776666665677887654 347999999988877653
No 3
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=97.46 E-value=0.0014 Score=43.25 Aligned_cols=73 Identities=18% Similarity=0.128 Sum_probs=52.6
Q ss_pred eeeccCCCCEEEEEcCCceEEEecCCcchhheeee--ccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLNSIDTLEQIYE--NSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~~~d~~~~~~~--~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
+++|+.++ .+|+|++.-.+||+.+.-+. .+.+. ...+.|.-+..--..+++|.- ..-+.++|||.++++.+..
T Consensus 30 ~l~WS~~~-~lAvg~D~tV~iWd~~tg~~-~~~~~~~~~~~~V~~v~~~~~~~~l~sg--s~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 30 LVDWSSGN-VLAVALDNSVYLWSASSGDI-LQLLQMEQPGEYISSVAWIKEGNYLAVG--TSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp CEEECTTS-EEEEEETTEEEEEETTTCCE-EEEEECCSTTCCEEEEEECTTSSEEEEE--ETTSEEEEEETTTTEEEEE
T ss_pred EEEECCCC-EEEEEeCCEEEEEECCCCCE-EEEEEecCCCCeEEEEEECCCCCEEEEE--ECCCcEEEeecCCceeEEE
Confidence 58899886 99999999999999654222 22333 344567777777777887643 3457999999999887753
No 4
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0011 Score=44.63 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=49.2
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCc-chhheeeeccCCCeEEEEEecc--cceEEEeccCCCcEEEEEeCCCCe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSI-DTLEQIYENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKEEGKNEE 74 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~-d~~~~~~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~d~~~~~ 74 (79)
++.|++|+..+++|..+| .+||+++.- ......+....+.+.-+..... .+++|..+ .-..++|||..+++
T Consensus 16 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~ 90 (379)
T 3jrp_A 16 DAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDGKVLIWKEENGR 90 (379)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTSCEEEEEEETTE
T ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec--cCCEEEEEEcCCCc
Confidence 789999999999998776 999986421 1112233345566666665544 67777664 33789999988775
No 5
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0018 Score=44.54 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=49.9
Q ss_pred CeeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeec-cCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEE
Q psy6185 1 MCSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYEN-SQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEE 76 (79)
Q Consensus 1 ~~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~-~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I 76 (79)
.|+.|++|+.-+++|..+| .+||++..-......+.. ..+++.-+..--...++|..+ . ..++|||.++++.+
T Consensus 174 ~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~--~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 174 SSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D--QTVVCFDLRKDVGT 248 (343)
T ss_dssp CEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S--SBEEEEETTSSTTC
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C--CeEEEEEcCCCCcc
Confidence 4789999999999988775 799987553332123443 456666665544555776655 2 39999999887654
No 6
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.31 E-value=0.0034 Score=41.88 Aligned_cols=75 Identities=13% Similarity=-0.030 Sum_probs=53.9
Q ss_pred CeeeccCC---CCEEEEEcCCc-eEEEecCC-cchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeE
Q psy6185 1 MCSVPLKG---LLSLSVGTKSG-YRLFSLNS-IDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEE 75 (79)
Q Consensus 1 ~~~~fNQD---~sc~~vgt~~G-frIyn~~~-~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~ 75 (79)
.|+.|++| +..+++|..+| .+||+++. -......+....+.+.-+..--..+++|..+ ..+.++|||..+++.
T Consensus 43 ~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~ 120 (368)
T 3mmy_A 43 GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS--CDKTAKMWDLSSNQA 120 (368)
T ss_dssp EEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEE
T ss_pred EEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc--CCCcEEEEEcCCCCc
Confidence 37899999 48899988876 89999764 2222234445677887777776777887553 347999999988876
Q ss_pred Ee
Q psy6185 76 EK 77 (79)
Q Consensus 76 I~ 77 (79)
+.
T Consensus 121 ~~ 122 (368)
T 3mmy_A 121 IQ 122 (368)
T ss_dssp EE
T ss_pred ee
Confidence 53
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.31 E-value=0.0021 Score=45.33 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=49.2
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEeccc-ceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~s-nLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
|++|++|+..++.|..+| .+||+++.- .....+....+.|.-+..-... +++|-. ..-+.++|||.++++.+.+
T Consensus 132 ~v~~spdg~~l~sgs~d~~i~iwd~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~l~s~--s~D~~v~iwd~~~~~~~~~ 207 (344)
T 4gqb_B 132 TVSVLSSGTQAVSGSKDICIKVWDLAQQ-VVLSSYRAHAAQVTCVAASPHKDSVFLSC--SEDNRILLWDTRCPKPASQ 207 (344)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECSSCTTEEEEE--ETTSCEEEEETTSSSCEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCcCCceEEEEecCCCCCceeee--ccccccccccccccceeee
Confidence 789999999999999887 899986532 2122334445666555543333 454433 3447899999988876654
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.25 E-value=0.0026 Score=43.21 Aligned_cols=75 Identities=9% Similarity=0.042 Sum_probs=48.3
Q ss_pred eeeccC-CCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecc--cceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLK-GLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQ-D~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
|+.|++ |...|+.|..+| .+||++....+..........++..+..... .+++|-. ..-+.++|||.++++.+.
T Consensus 145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--s~D~~i~iWd~~~~~~~~ 222 (304)
T 2ynn_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA--SDDLTIKIWDYQTKSCVA 222 (304)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEE--ETTSEEEEEETTTTEEEE
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEE--cCCCeEEEEeCCCCccce
Confidence 789998 678888877764 7999865433322222223466766666543 3355433 455899999999887765
Q ss_pred e
Q psy6185 78 K 78 (79)
Q Consensus 78 ~ 78 (79)
.
T Consensus 223 ~ 223 (304)
T 2ynn_A 223 T 223 (304)
T ss_dssp E
T ss_pred e
Confidence 3
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.24 E-value=0.0042 Score=42.13 Aligned_cols=74 Identities=9% Similarity=-0.081 Sum_probs=53.5
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++.|++|+.-++.|..+| .+||+.+.-.. ...+....+++.-+...-..+++|.. ..-+.++|||.++++.+.+
T Consensus 18 ~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~--s~d~~i~vwd~~~~~~~~~ 92 (304)
T 2ynn_A 18 GIDFHPTEPWVLTTLYSGRVELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVG--SDDFRIRVFNYNTGEKVVD 92 (304)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEEEGGGTEEEEE--ETTSEEEEEETTTCCEEEE
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCce-eEEeeccCCcEEEEEEeCCCCEEEEE--CCCCEEEEEECCCCcEEEE
Confidence 689999999999888775 89998654221 22334456677777777777887654 3457999999998877653
No 10
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.16 E-value=0.0051 Score=40.23 Aligned_cols=70 Identities=10% Similarity=0.080 Sum_probs=48.1
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcc-h--hheeeeccCCCeEEEEEecc--cceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSID-T--LEQIYENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d-~--~~~~~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~d~~~~ 73 (79)
|+.|++|+..+++|..+| .+||+++.-. + +...+....+.+.-+...-. .+++|..+ ..+.++|||...+
T Consensus 16 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~--~dg~v~vwd~~~~ 91 (351)
T 3f3f_A 16 DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS--YDKTVKLWEEDPD 91 (351)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE--TTSCEEEEEECTT
T ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc--CCCeEEEEecCCC
Confidence 789999999999999987 9999976421 1 12223345566666665542 56776554 3478999998765
No 11
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.13 E-value=0.0065 Score=40.70 Aligned_cols=74 Identities=11% Similarity=0.048 Sum_probs=50.2
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
++.|++|+..+++|..+| .++|+...-.+...........+..+..--..++++.. ...+.++|||..+++.+.
T Consensus 154 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~ 228 (312)
T 4ery_A 154 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--TLDNTLKLWDYSKGKCLK 228 (312)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEE--ETTTEEEEEETTTTEEEE
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEE--cCCCeEEEEECCCCcEEE
Confidence 578999999999998886 78998654332222223344566666655556666554 345799999998887654
No 12
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.12 E-value=0.0039 Score=40.80 Aligned_cols=73 Identities=7% Similarity=-0.081 Sum_probs=48.3
Q ss_pred eeeccC--CCCEEEEEcCCc-eEEEecCCcch--------hheeeeccCCCeEEEEEecc--cceEEEeccCCCcEEEEE
Q psy6185 2 CSVPLK--GLLSLSVGTKSG-YRLFSLNSIDT--------LEQIYENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKE 68 (79)
Q Consensus 2 ~~~fNQ--D~sc~~vgt~~G-frIyn~~~~d~--------~~~~~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~ 68 (79)
++.|++ |+..+++|..+| .+||+++.-++ ....+....+.+.-+...-. .++++..+ ..+.++||
T Consensus 62 ~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~v~iw 139 (351)
T 3f3f_A 62 AIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG--NDGILRLY 139 (351)
T ss_dssp EEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTCEEEEE
T ss_pred EEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec--CCCcEEEe
Confidence 688998 689999998887 89998754211 01122334566666665554 66776654 45799999
Q ss_pred eCCCCeEE
Q psy6185 69 EGKNEEEE 76 (79)
Q Consensus 69 d~~~~~~I 76 (79)
|.++++.+
T Consensus 140 d~~~~~~~ 147 (351)
T 3f3f_A 140 DALEPSDL 147 (351)
T ss_dssp ECSSTTCT
T ss_pred cCCChHHh
Confidence 98776543
No 13
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.12 E-value=0.0071 Score=41.74 Aligned_cols=74 Identities=8% Similarity=-0.059 Sum_probs=53.9
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++.|++|+..+++|..+| .+||+++.-.. ...+....+.+.-+...-..+++|..+ ..+.+++||.++++.+..
T Consensus 144 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~ 218 (420)
T 3vl1_A 144 KLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGRNVLSAS--LDGTIRLWECGTGTTIHT 218 (420)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTTEEEEEE--TTSCEEEEETTTTEEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCCEEEEEc--CCCcEEEeECCCCceeEE
Confidence 689999999999999886 89998754322 233444567777777766677777543 346899999998877653
No 14
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.11 E-value=0.0053 Score=46.17 Aligned_cols=74 Identities=8% Similarity=-0.106 Sum_probs=55.5
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
|++|++|+..+++|..+| .+||+.+.-.. ...+....+++.-+..--..+++|..+. .+.++|||..+++.+..
T Consensus 18 ~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vw~~~~~~~~~~ 92 (814)
T 3mkq_A 18 GIDFHPTEPWVLTTLYSGRVEIWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSD--DFRIRVFNYNTGEKVVD 92 (814)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEEEGGGTEEEEEET--TSEEEEEETTTCCEEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCce-EEEEecCCCcEEEEEEeCCCCEEEEEeC--CCeEEEEECCCCcEEEE
Confidence 789999999999999886 89998643211 2234445677877777777888887653 57999999988877654
No 15
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.09 E-value=0.0073 Score=40.43 Aligned_cols=73 Identities=11% Similarity=0.018 Sum_probs=51.8
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
++.|++|+..+++|..+| .+||+... ..+...+....+++.-+..--..+++|..+ .-+.++|||..+++.+.
T Consensus 28 ~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~ 101 (312)
T 4ery_A 28 SVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSAS--DDKTLKIWDVSSGKCLK 101 (312)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEE
T ss_pred EEEECCCCCEEEEeeCCCeEEEEeCCC-cccchhhccCCCceEEEEEcCCCCEEEEEC--CCCEEEEEECCCCcEEE
Confidence 689999999999988775 78998543 222334444566777666666667776654 34789999998877654
No 16
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.006 Score=40.69 Aligned_cols=75 Identities=8% Similarity=-0.064 Sum_probs=51.2
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++.|++|+..+++|..+| .++|++..-......+....+++.-+..--..++++..+ ..+.+.+||.++++.+..
T Consensus 180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS--RDTNSFLVDVSTLQVLKK 255 (369)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEE
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec--CCceEEEEECCCCceeee
Confidence 578999999999999886 789986531111223344456666665555667776553 447899999998877653
No 17
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.07 E-value=0.0048 Score=41.14 Aligned_cols=72 Identities=10% Similarity=-0.045 Sum_probs=48.5
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecc--cceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
++.|++|+..+++|..+| .+||+++.-.. . ......+.+.-+....+ .++++.. ...+.+++||.++++.+.
T Consensus 91 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~-~~~~~~~~v~~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~ 165 (368)
T 3mmy_A 91 DVCWSDDGSKVFTASCDKTAKMWDLSSNQA-I-QIAQHDAPVKTIHWIKAPNYSCVMTG--SWDKTLKFWDTRSSNPMM 165 (368)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEE-E-EEEECSSCEEEEEEEECSSCEEEEEE--ETTSEEEEECSSCSSCSE
T ss_pred EEEECcCCCEEEEEcCCCcEEEEEcCCCCc-e-eeccccCceEEEEEEeCCCCCEEEEc--cCCCcEEEEECCCCcEEE
Confidence 689999999999999887 89998654222 1 22335567777766433 3444433 345789999988776543
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.07 E-value=0.0075 Score=41.58 Aligned_cols=75 Identities=8% Similarity=-0.028 Sum_probs=50.0
Q ss_pred CeeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 1 MCSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 1 ~~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
.++.|++|+..+++|..+| .+||++..-.. ...+....+.+.-+..--...++|.. ...+.++|||..+++.+..
T Consensus 210 ~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l~s~--s~D~~v~iwd~~~~~~~~~ 285 (321)
T 3ow8_A 210 RSLTFSPDSQLLVTASDDGYIKIYDVQHANL-AGTLSGHASWVLNVAFCPDDTHFVSS--SSDKSVKVWDVGTRTCVHT 285 (321)
T ss_dssp CEEEECTTSCEEEEECTTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEE--ETTSCEEEEETTTTEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEEECCCcce-eEEEcCCCCceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCEEEEE
Confidence 3689999999999999887 89998654222 22333344555544443344565443 4457899999998887654
No 19
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.02 E-value=0.0091 Score=40.45 Aligned_cols=74 Identities=11% Similarity=0.011 Sum_probs=49.6
Q ss_pred eeeccC-CCCEEEEEcCCc-eEEEecCCcchhheee------------eccCCCeEEEEEec-ccceEEEeccCCCcEEE
Q psy6185 2 CSVPLK-GLLSLSVGTKSG-YRLFSLNSIDTLEQIY------------ENSQEDVCIVERLF-SSSLVAVVSLSSPRKLT 66 (79)
Q Consensus 2 ~~~fNQ-D~sc~~vgt~~G-frIyn~~~~d~~~~~~------------~~~~g~v~ivEmLf-~snLlalVg~~~prkL~ 66 (79)
|+.|++ |+..+++|..+| .+||+.+.-+...... ....+++.-+...- ..++++..+ ..+.++
T Consensus 48 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~d~~i~ 125 (408)
T 4a11_B 48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS--FDKTLK 125 (408)
T ss_dssp EEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE--TTSEEE
T ss_pred EEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe--CCCeEE
Confidence 789999 999999999887 9999876532211111 01345565555444 445776654 347899
Q ss_pred EEeCCCCeEEe
Q psy6185 67 KEEGKNEEEEK 77 (79)
Q Consensus 67 I~d~~~~~~I~ 77 (79)
+||..+++.+.
T Consensus 126 iwd~~~~~~~~ 136 (408)
T 4a11_B 126 VWDTNTLQTAD 136 (408)
T ss_dssp EEETTTTEEEE
T ss_pred EeeCCCCccce
Confidence 99998877654
No 20
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.01 E-value=0.0094 Score=41.52 Aligned_cols=75 Identities=7% Similarity=-0.067 Sum_probs=51.9
Q ss_pred eeeccC-CCCEEEEEcCCc-eEEEecCCcc------hhheeeeccCCCeEEEEEeccc-ceEEEeccCCCcEEEEEeCCC
Q psy6185 2 CSVPLK-GLLSLSVGTKSG-YRLFSLNSID------TLEQIYENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTKEEGKN 72 (79)
Q Consensus 2 ~~~fNQ-D~sc~~vgt~~G-frIyn~~~~d------~~~~~~~~~~g~v~ivEmLf~s-nLlalVg~~~prkL~I~d~~~ 72 (79)
++.|++ |+..+++|..+| .+||++..-. .....+....+.+.-+..--.. +++|..+ ..+.++|||..+
T Consensus 86 ~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~ 163 (402)
T 2aq5_A 86 DIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG--CDNVILVWDVGT 163 (402)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE--TTSCEEEEETTT
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc--CCCEEEEEECCC
Confidence 689999 999999999887 8999875421 1122334455677776665554 5665543 347899999988
Q ss_pred CeEEee
Q psy6185 73 EEEEKK 78 (79)
Q Consensus 73 ~~~I~~ 78 (79)
++.+..
T Consensus 164 ~~~~~~ 169 (402)
T 2aq5_A 164 GAAVLT 169 (402)
T ss_dssp TEEEEE
T ss_pred CCccEE
Confidence 877653
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0092 Score=40.53 Aligned_cols=73 Identities=11% Similarity=0.073 Sum_probs=52.5
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++.|++|+..+++|..+| .+||+.+. .....+....+.+.-+...-..++++..+ ..+.+++||..+++.+..
T Consensus 113 ~~~~s~~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 113 CLAWSHDGNSIVTGVENGELRLWNKTG--ALLNVLNFHRAPIVSVKWNKDGTHIISMD--VENVTILWNVISGTVMQH 186 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCCSCEEEEEECTTSSEEEEEE--TTCCEEEEETTTTEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCC--CeeeeccCCCccEEEEEECCCCCEEEEEe--cCCeEEEEECCCCcEEEE
Confidence 688999999999999987 89997321 11223344556777777766777777654 347899999988877653
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.95 E-value=0.011 Score=38.90 Aligned_cols=75 Identities=12% Similarity=0.079 Sum_probs=50.8
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcch-hheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDT-LEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~-~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++.|++|+..+++|..+| .++|+.+.-++ ....+....+.+.-+...-..++++..+ ..+.+.+||.++++.+..
T Consensus 102 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~v~~~d~~~~~~~~~ 178 (337)
T 1gxr_A 102 SCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC--SDGNIAVWDLHNQTLVRQ 178 (337)
T ss_dssp EEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEE
T ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEe--CCCcEEEEeCCCCceeee
Confidence 688999999999998876 89998654221 1222333455666666655667776554 346899999988876643
No 23
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=96.93 E-value=0.0062 Score=42.82 Aligned_cols=68 Identities=10% Similarity=-0.050 Sum_probs=45.4
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCC
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGK 71 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~ 71 (79)
++.|++|+..+++|..+| .+||+++.-.++........+.|.-+.---...+||- +..-+.++|||..
T Consensus 274 ~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS--~S~D~tvrvw~ip 342 (365)
T 4h5i_A 274 SMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVAS--VSAANTIHIIKLP 342 (365)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEE--EETTSEEEEEECC
T ss_pred eEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEE--EeCCCeEEEEEcC
Confidence 688999999999999886 8999865433322222224556555544434556654 4566899999964
No 24
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=96.91 E-value=0.0079 Score=43.37 Aligned_cols=70 Identities=10% Similarity=-0.017 Sum_probs=49.3
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEE
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEE 76 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I 76 (79)
|++|++|+..+++|..+| .+||+.+. ++ ...+....++|.-+..--..++||..| .-+.++|||.. ++.+
T Consensus 21 ~~a~spdg~~las~~~d~~v~iWd~~~-~~-~~~l~gh~~~V~~l~fspdg~~las~~--~d~~i~vWd~~-~~~~ 91 (577)
T 2ymu_A 21 GVAFSPDGQTIASASDDKTVKLWNRNG-QL-LQTLTGHSSSVWGVAFSPDGQTIASAS--DDKTVKLWNRN-GQLL 91 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECTTS-CE-EEEEECCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETT-SCEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCC-CE-EEEEeCCCCCEEEEEECCCCCEEEEEe--CCCEEEEEECC-CCEE
Confidence 789999999999998887 89998432 22 234455567777666655667887665 34789999953 4443
No 25
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=96.87 E-value=0.011 Score=41.15 Aligned_cols=69 Identities=19% Similarity=0.113 Sum_probs=47.6
Q ss_pred eeeccCCCCEEEEEcCCc--eEEEecCCcchhheeee-c-cCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKGLLSLSVGTKSG--YRLFSLNSIDTLEQIYE-N-SQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G--frIyn~~~~d~~~~~~~-~-~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~ 73 (79)
+++|++|+..++.|..+| .+||++..-+.. ..+. . ..+.+.-+..--..+++|..+ .-+.++|||...+
T Consensus 200 ~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~-~~~~~g~h~~~v~~~~~s~~~~~l~s~s--~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 200 MVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV-REFRRGLDRADVVDMKWSTDGSKLAVVS--DKWTLHVFEIFND 272 (355)
T ss_dssp EEEECTTSSEEEEEETTCSEEEEEETTTCCEE-EEEECTTCCSCEEEEEECTTSCEEEEEE--TTCEEEEEESSCC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-EEEEcCCCCCcEEEEEECCCCCEEEEEE--CCCEEEEEEccCC
Confidence 789999999999999998 899996543222 2233 1 445565555544566776654 3479999997654
No 26
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.015 Score=40.63 Aligned_cols=74 Identities=16% Similarity=0.068 Sum_probs=46.9
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEE----ecccceEEEeccCCCcEEEEEeCCCCeEE
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVER----LFSSSLVAVVSLSSPRKLTKEEGKNEEEE 76 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEm----Lf~snLlalVg~~~prkL~I~d~~~~~~I 76 (79)
++.|++|+..+++|..+| .+||++..-.+.. .+. ..+.-.+..+ -|+.+--.++.+...+.++|||..+++.+
T Consensus 219 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~-~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 296 (437)
T 3gre_A 219 SICIDEECCVLILGTTRGIIDIWDIRFNVLIR-SWS-FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ 296 (437)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTTTEEEE-EEB-CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCccEEE-EEe-cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE
Confidence 688999999999999998 9999865422211 111 1223344444 33333323344456689999999988765
Q ss_pred e
Q psy6185 77 K 77 (79)
Q Consensus 77 ~ 77 (79)
.
T Consensus 297 ~ 297 (437)
T 3gre_A 297 Y 297 (437)
T ss_dssp E
T ss_pred E
Confidence 4
No 27
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.85 E-value=0.018 Score=37.97 Aligned_cols=74 Identities=3% Similarity=-0.025 Sum_probs=51.3
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++.|++|+..+++|..+| .++|+++.-++ ...+....+.+.-+..--..++++..+ ..+.+++||.++++.+.+
T Consensus 146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~ 220 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGTKLWTGG--LDNTVRSWDLREGRQLQQ 220 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCce-eeeeecccCceEEEEECCCCCEEEEEe--cCCcEEEEECCCCceEee
Confidence 678999999999998775 89998654222 223333456666666655667777654 447899999988876643
No 28
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.82 E-value=0.015 Score=40.87 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=50.1
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
++.|++|+..+++|..+| .+||+.+.-. ....+....+.+.-+..--..++++.. ...+.++|||.++++.+.
T Consensus 128 ~v~~s~dg~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~--s~d~~v~iwd~~~~~~~~ 201 (393)
T 1erj_A 128 SVCFSPDGKFLATGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGDKLVSG--SGDRTVRIWDLRTGQCSL 201 (393)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEE--ETTSEEEEEETTTTEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCCEEEEe--cCCCcEEEEECCCCeeEE
Confidence 688999999999988875 8999865321 122344455666666655556666543 345899999998877553
No 29
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=96.75 E-value=0.014 Score=39.00 Aligned_cols=74 Identities=12% Similarity=0.022 Sum_probs=49.1
Q ss_pred eeeccCC----CCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEec-ccceEEEeccCCCcEEEEEeCCCCeE
Q psy6185 2 CSVPLKG----LLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLF-SSSLVAVVSLSSPRKLTKEEGKNEEE 75 (79)
Q Consensus 2 ~~~fNQD----~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf-~snLlalVg~~~prkL~I~d~~~~~~ 75 (79)
++.|++| +..+++|..+| .+||+.+.-++ ...+....+.+.-+...- ..+++|..+ ..+.++|||.++++.
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~ 150 (366)
T 3k26_A 74 TCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVS--KDHALRLWNIQTDTL 150 (366)
T ss_dssp EEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-EEEEESCCSCEEEEEECSSCTTEEEEEE--TTSCEEEEETTTTEE
T ss_pred EEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-eeeecCCCCcEEEEEECCCCCCEEEEEe--CCCeEEEEEeecCeE
Confidence 5788888 56899988887 89998654322 223344456665555544 556776554 347899999988876
Q ss_pred Eee
Q psy6185 76 EKK 78 (79)
Q Consensus 76 I~~ 78 (79)
+..
T Consensus 151 ~~~ 153 (366)
T 3k26_A 151 VAI 153 (366)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 30
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.74 E-value=0.016 Score=38.98 Aligned_cols=75 Identities=19% Similarity=-0.024 Sum_probs=48.5
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCC-----------------cchhheeeeccCCCeEEEEEecccceEEEeccCCCc
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNS-----------------IDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPR 63 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~-----------------~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~pr 63 (79)
++.|++|+..+++|..+| .++|++.. .......+....+.+.-+..--..++++..+ ..+
T Consensus 147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~ 224 (372)
T 1k8k_C 147 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS--HDS 224 (372)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE--TTT
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe--CCC
Confidence 688999999999998775 78998531 1111112223345555555444555666554 447
Q ss_pred EEEEEeCCCCeEEee
Q psy6185 64 KLTKEEGKNEEEEKK 78 (79)
Q Consensus 64 kL~I~d~~~~~~I~~ 78 (79)
.+++||.++++.+.+
T Consensus 225 ~i~i~d~~~~~~~~~ 239 (372)
T 1k8k_C 225 TVCLADADKKMAVAT 239 (372)
T ss_dssp EEEEEEGGGTTEEEE
T ss_pred EEEEEECCCCceeEE
Confidence 899999988776654
No 31
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.69 E-value=0.0078 Score=42.09 Aligned_cols=73 Identities=8% Similarity=0.071 Sum_probs=47.4
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEeccc-ceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~s-nLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
|+.|++|+..+++|..+| .+||+.+.-. ....+....+.+.-+..-... .+++..+ .-++++|||.++++.+.
T Consensus 144 ~v~~spdg~~l~sgs~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~~~~s~~--~dg~v~~wd~~~~~~~~ 218 (357)
T 4g56_B 144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKA-VLKSYNAHSSEVNCVAACPGKDTIFLSCG--EDGRILLWDTRKPKPAT 218 (357)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTCSSCEEEEE--TTSCEEECCTTSSSCBC
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCceeeeec--cCCceEEEECCCCceee
Confidence 789999999999988886 8999864321 122333345566555543333 3454433 34789999998876553
No 32
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.69 E-value=0.021 Score=39.93 Aligned_cols=76 Identities=13% Similarity=-0.004 Sum_probs=51.0
Q ss_pred eeeccCCCCEEEEEcCC-ceEEEecCCcchhheeeeccCCCeEEEEEec-ccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKS-GYRLFSLNSIDTLEQIYENSQEDVCIVERLF-SSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf-~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++.|++|+..|++|..+ -.+||++..-.+ ...+....+.+.-+..-- ..+++|..|+...+.+++||..+++.+..
T Consensus 222 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~ 299 (401)
T 4aez_A 222 GLAWRSDGLQLASGGNDNVVQIWDARSSIP-KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT 299 (401)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTCSSE-EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEccCCCCCc-cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE
Confidence 67899999999999886 588998654222 122333345554444443 34667665556678999999988876643
No 33
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.65 E-value=0.022 Score=38.80 Aligned_cols=76 Identities=17% Similarity=0.093 Sum_probs=50.5
Q ss_pred CeeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeec---c---CCCeEEEEEecccceEEEecc-CCCcEEEEEeCCC
Q psy6185 1 MCSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYEN---S---QEDVCIVERLFSSSLVAVVSL-SSPRKLTKEEGKN 72 (79)
Q Consensus 1 ~~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~---~---~g~v~ivEmLf~snLlalVg~-~~prkL~I~d~~~ 72 (79)
.++.|++|+ .+++|..+| .++|++..-.+. ..+.. . .+++.-+..--..+++|..+. .....++|||.++
T Consensus 190 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~ 267 (397)
T 1sq9_A 190 TSVDISERG-LIATGFNNGTVQISELSTLRPL-YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF 267 (397)
T ss_dssp CEEEECTTS-EEEEECTTSEEEEEETTTTEEE-EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred eEEEECCCc-eEEEEeCCCcEEEEECCCCcee-EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 378899999 999999886 889986542221 22333 3 556666665556677765543 1227999999988
Q ss_pred CeEEee
Q psy6185 73 EEEEKK 78 (79)
Q Consensus 73 ~~~I~~ 78 (79)
++.+.+
T Consensus 268 ~~~~~~ 273 (397)
T 1sq9_A 268 GERIGS 273 (397)
T ss_dssp CCEEEE
T ss_pred Ccccce
Confidence 876654
No 34
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.65 E-value=0.0032 Score=42.98 Aligned_cols=72 Identities=11% Similarity=0.054 Sum_probs=45.9
Q ss_pred CeeeccCCCCEEEEEcCC-ceEEEecCCcc-hhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCe
Q psy6185 1 MCSVPLKGLLSLSVGTKS-GYRLFSLNSID-TLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEE 74 (79)
Q Consensus 1 ~~~~fNQD~sc~~vgt~~-GfrIyn~~~~d-~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~ 74 (79)
.|++|++|+..+++|..+ -.+||+.+.-+ .....+....+++.-+..--..+++|..+ ..+.++|||..++.
T Consensus 15 ~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS--QDRNAYVYEKRPDG 88 (377)
T ss_dssp SCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE--TTSSEEEC------
T ss_pred EEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe--CCCeEEEEEcCCCC
Confidence 478999999999999666 58999865321 22223444566777776666667887654 34789999987765
No 35
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.65 E-value=0.018 Score=39.66 Aligned_cols=73 Identities=11% Similarity=0.023 Sum_probs=48.7
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
++.|++|+..+++|..+| .+||++..-.+ ...+....+++.-+..--...+||.. ..-+.++|||.++++.+.
T Consensus 169 ~~~~spdg~~lasg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~spd~~~l~s~--s~dg~i~iwd~~~~~~~~ 242 (321)
T 3ow8_A 169 SIAYSPDGKYLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDSQLLVTA--SDDGYIKIYDVQHANLAG 242 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCCCEEEECTTSCEEEEE--CTTSCEEEEETTTCCEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcE-EEEEcccCCceeEEEEcCCCCEEEEE--cCCCeEEEEECCCcceeE
Confidence 678999999999998886 78998643221 22333344556555554455666543 445789999998776654
No 36
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.61 E-value=0.018 Score=40.12 Aligned_cols=74 Identities=5% Similarity=-0.016 Sum_probs=50.5
Q ss_pred eeeccCCC-CEEEEEcCCc-eEEEecCCcchhheee--eccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGL-LSLSVGTKSG-YRLFSLNSIDTLEQIY--ENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~-sc~~vgt~~G-frIyn~~~~d~~~~~~--~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
++.|++|+ ..+++|..+| .+||+++.-++ ...+ ....+.+.-+..--..+++|..+ ..++++|||.++++.+.
T Consensus 136 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGALICTSC--RDKRVRVIEPRKGTVVA 212 (402)
T ss_dssp EEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSSCEEEEE--TTSEEEEEETTTTEEEE
T ss_pred EEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCCEEEEEe--cCCcEEEEeCCCCceee
Confidence 68899997 5787777775 89998654222 2233 23455666666555677777654 34799999999888765
Q ss_pred e
Q psy6185 78 K 78 (79)
Q Consensus 78 ~ 78 (79)
+
T Consensus 213 ~ 213 (402)
T 2aq5_A 213 E 213 (402)
T ss_dssp E
T ss_pred e
Confidence 4
No 37
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.61 E-value=0.034 Score=37.00 Aligned_cols=75 Identities=8% Similarity=-0.039 Sum_probs=49.6
Q ss_pred eeeccC-CCCEEEEEcCCc-eEEEecCCc-----chhheeeecc---------CCCeEEEEEecccceEEEeccCCCcEE
Q psy6185 2 CSVPLK-GLLSLSVGTKSG-YRLFSLNSI-----DTLEQIYENS---------QEDVCIVERLFSSSLVAVVSLSSPRKL 65 (79)
Q Consensus 2 ~~~fNQ-D~sc~~vgt~~G-frIyn~~~~-----d~~~~~~~~~---------~g~v~ivEmLf~snLlalVg~~~prkL 65 (79)
++.|++ |+..+++|..+| .+||+.++- ......+... .+.+.-+..--..++||..+ ..+.+
T Consensus 198 ~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i 275 (342)
T 1yfq_A 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG--SDGII 275 (342)
T ss_dssp EEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE--TTSCE
T ss_pred EEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec--CCceE
Confidence 678999 999999999986 577775442 1222233322 22565555554567776543 45789
Q ss_pred EEEeCCCCeEEee
Q psy6185 66 TKEEGKNEEEEKK 78 (79)
Q Consensus 66 ~I~d~~~~~~I~~ 78 (79)
+|||..+++.+.+
T Consensus 276 ~vwd~~~~~~~~~ 288 (342)
T 1yfq_A 276 SCWNLQTRKKIKN 288 (342)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEcCccHhHhhh
Confidence 9999998887765
No 38
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.59 E-value=0.017 Score=40.97 Aligned_cols=73 Identities=10% Similarity=0.038 Sum_probs=51.8
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
|+.|++|+.-++.|..+| .+||+.+.- .+...+....+.|.-+..--..+++|..| .-+.++|||..+++.+.
T Consensus 113 ~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-~~~~~l~~h~~~V~~v~~~~~~~~l~sgs--~D~~i~iwd~~~~~~~~ 186 (410)
T 1vyh_C 113 RVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFDHSGKLLASCS--ADMTIKLWDFQGFECIR 186 (410)
T ss_dssp EEEECSSSSEEEEEESSSCEEEEETTTC-CCCEEECCCSSCEEEEEECTTSSEEEEEE--TTSCCCEEETTSSCEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEEeccCCcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeE
Confidence 788999999999888875 899986542 22344555567777666655666665543 44789999998877654
No 39
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.57 E-value=0.024 Score=40.70 Aligned_cols=73 Identities=12% Similarity=-0.045 Sum_probs=50.8
Q ss_pred eeeccCC-CCEEEEEcCC-ceEEEecCCcchhheee-e---ccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeE
Q psy6185 2 CSVPLKG-LLSLSVGTKS-GYRLFSLNSIDTLEQIY-E---NSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEE 75 (79)
Q Consensus 2 ~~~fNQD-~sc~~vgt~~-GfrIyn~~~~d~~~~~~-~---~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~ 75 (79)
++.|++| +..+++|..+ -.++|++..-++.. .+ . ...+.+.-+... ..++++..+ ..+.+++||..+++.
T Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~v~~~~~~-~~~~l~~~~--~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 211 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK-YIEDDQEPVQGGIFALSWL-DSQKFATVG--ADATIRVWDVTTSKC 286 (615)
T ss_dssp EEEECSTTCCEEEEEETTCCEEEEETTTCCEEE-ECCBTTBCCCSCEEEEEES-SSSEEEEEE--TTSEEEEEETTTTEE
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE-EecccccccCCceEEEEEc-CCCEEEEEc--CCCcEEEEECCCCcE
Confidence 6899999 9999988876 58999865433322 23 3 345667666666 667776554 347899999998877
Q ss_pred Eee
Q psy6185 76 EKK 78 (79)
Q Consensus 76 I~~ 78 (79)
+..
T Consensus 287 ~~~ 289 (615)
T 1pgu_A 287 VQK 289 (615)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 40
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=96.54 E-value=0.014 Score=40.46 Aligned_cols=72 Identities=10% Similarity=0.119 Sum_probs=47.1
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcch----------hheeeeccC------------CCeEEEEEeccc--ceEEE
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDT----------LEQIYENSQ------------EDVCIVERLFSS--SLVAV 56 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~----------~~~~~~~~~------------g~v~ivEmLf~s--nLlal 56 (79)
|+.|++|+..+++|..+| .+||+++.-++ +...+.... +.|.-+...-.. ++++.
T Consensus 33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s 112 (447)
T 3dw8_B 33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLL 112 (447)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEE
Confidence 789999999999999886 89998754221 111222233 556666665555 56655
Q ss_pred eccCCCcEEEEEeCCCCeE
Q psy6185 57 VSLSSPRKLTKEEGKNEEE 75 (79)
Q Consensus 57 Vg~~~prkL~I~d~~~~~~ 75 (79)
.+ .-+.++|||...+..
T Consensus 113 ~s--~d~~i~iw~~~~~~~ 129 (447)
T 3dw8_B 113 ST--NDKTIKLWKISERDK 129 (447)
T ss_dssp EE--CSSCEEEEEEEEEEE
T ss_pred eC--CCCeEEEEecccccC
Confidence 43 457899999876543
No 41
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.54 E-value=0.033 Score=37.49 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=47.5
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCc-chhheeeeccCCCeEEEEEecc--cceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSI-DTLEQIYENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~-d~~~~~~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~d~~~~ 73 (79)
++.|++|+.-++.|..+| .+||+.+.- ..+...+....++|.-+..-.. .++||-.+ .-++++|||..++
T Consensus 14 ~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s--~D~~v~iWd~~~~ 87 (297)
T 2pm7_B 14 DAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDGKVMIWKEENG 87 (297)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE--TTTEEEEEEBSSS
T ss_pred EEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEc--CCCEEEEEEcCCC
Confidence 689999999999998886 999986531 1222344445667766654432 45665543 4589999998765
No 42
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.52 E-value=0.023 Score=45.12 Aligned_cols=74 Identities=8% Similarity=0.011 Sum_probs=53.7
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
|+.|++|+..+++|..+| .+||+...-.+ ...+....++|.-+..--..+++|..+ ..+.++|||..+++.+..
T Consensus 620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~~--~d~~v~vwd~~~~~~~~~ 694 (1249)
T 3sfz_A 620 HACFSQDGQRIASCGADKTLQVFKAETGEK-LLDIKAHEDEVLCCAFSSDDSYIATCS--ADKKVKIWDSATGKLVHT 694 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCCE-EEEeccCCCCEEEEEEecCCCEEEEEe--CCCeEEEEECCCCceEEE
Confidence 789999999999999887 89998654222 223344566777666666667877654 447899999998877653
No 43
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.024 Score=38.75 Aligned_cols=75 Identities=11% Similarity=0.047 Sum_probs=49.1
Q ss_pred eeeccCCC-CEEEEEcCCc----eEEEecCCcchhheeee-ccCCCeEEEEEec-ccceEEEeccCCCcEEEEEeCCCCe
Q psy6185 2 CSVPLKGL-LSLSVGTKSG----YRLFSLNSIDTLEQIYE-NSQEDVCIVERLF-SSSLVAVVSLSSPRKLTKEEGKNEE 74 (79)
Q Consensus 2 ~~~fNQD~-sc~~vgt~~G----frIyn~~~~d~~~~~~~-~~~g~v~ivEmLf-~snLlalVg~~~prkL~I~d~~~~~ 74 (79)
++.|++|+ ..+++|..+| .++|++..-......+. ...+++.-+..-- ..+++|..+ ..+.++|||.++++
T Consensus 219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~--~dg~v~~wd~~~~~ 296 (416)
T 2pm9_A 219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG--RDNTVLLWNPESAE 296 (416)
T ss_dssp EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEE--SSSEEEEECSSSCC
T ss_pred EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEe--CCCCEEEeeCCCCc
Confidence 68899997 6899998885 89998654211122233 3345555444433 456776554 34789999999887
Q ss_pred EEee
Q psy6185 75 EEKK 78 (79)
Q Consensus 75 ~I~~ 78 (79)
.+.+
T Consensus 297 ~~~~ 300 (416)
T 2pm9_A 297 QLSQ 300 (416)
T ss_dssp EEEE
T ss_pred ccee
Confidence 7654
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.45 E-value=0.02 Score=39.41 Aligned_cols=71 Identities=10% Similarity=-0.120 Sum_probs=44.6
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccc-eEEEeccCCCcEEEEEeCCCCe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSS-LVAVVSLSSPRKLTKEEGKNEE 74 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~sn-LlalVg~~~prkL~I~d~~~~~ 74 (79)
++.|++|+..+++|..+| .+||++..-.+.........+.+.-+..--... +++.. ...+.++|||.++++
T Consensus 252 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g--~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 252 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG--YENGMLAQWDLRSPE 324 (420)
T ss_dssp TTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE--ETTSEEEEEETTCTT
T ss_pred ceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE--eCCCeEEEEEcCCCc
Confidence 467899999999999986 899986543322222222334454444433333 66543 344799999988753
No 45
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.43 E-value=0.038 Score=37.90 Aligned_cols=73 Identities=10% Similarity=0.016 Sum_probs=50.0
Q ss_pred eeeccCCCCEEEEEcCC-ceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKS-GYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
++.|++|+..++.|..+ -.++|++..-. ....+....+.+.-+..--..+++|.. ..-+.++|||.++++.+.
T Consensus 189 ~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~--s~d~~v~iwd~~~~~~~~ 262 (340)
T 1got_B 189 SLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAFATG--SDDATCRLFDLRADQELM 262 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSSEEEEE--ETTSCEEEEETTTTEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCe-eEEEEcCCcCCEEEEEEcCCCCEEEEE--cCCCcEEEEECCCCcEEE
Confidence 68899999999888877 58999864322 223344455666666655566777654 345789999998876653
No 46
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.42 E-value=0.032 Score=38.01 Aligned_cols=74 Identities=12% Similarity=-0.077 Sum_probs=51.1
Q ss_pred eeeccCCCCEEEEEcCC----ceEEEecCCcchhheeeec-------------cCCCeEEEEEecccceEEEeccCCCcE
Q psy6185 2 CSVPLKGLLSLSVGTKS----GYRLFSLNSIDTLEQIYEN-------------SQEDVCIVERLFSSSLVAVVSLSSPRK 64 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~----GfrIyn~~~~d~~~~~~~~-------------~~g~v~ivEmLf~snLlalVg~~~prk 64 (79)
++.|++|+..+++|..+ -.++|++..-.+.. .+.. ..+.+.-+..--..++||..+ ..+.
T Consensus 238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~ 314 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG-SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG--WDGK 314 (397)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE-EECBC--------CCBSBSSCEEEEEECSSSSEEEEEE--TTSE
T ss_pred eEEECCCCCEEEEEecCCCCceEEEEECCCCcccc-eeccCcccccccccccccCCcEEEEEECCCCCEEEEEe--CCCe
Confidence 68899999999999887 58899865433222 2332 345555555544567776654 4579
Q ss_pred EEEEeCCCCeEEee
Q psy6185 65 LTKEEGKNEEEEKK 78 (79)
Q Consensus 65 L~I~d~~~~~~I~~ 78 (79)
++|||.++++.+.+
T Consensus 315 i~iwd~~~~~~~~~ 328 (397)
T 1sq9_A 315 LRFWDVKTKERITT 328 (397)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEEEcCCCceeEE
Confidence 99999998887754
No 47
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=96.41 E-value=0.028 Score=38.90 Aligned_cols=72 Identities=8% Similarity=0.064 Sum_probs=47.1
Q ss_pred eeeccCCC-CEEEEEcCCc-eEEEecCCcchh---heeeeccCC------------CeEEEEEecccceEEEeccCCCcE
Q psy6185 2 CSVPLKGL-LSLSVGTKSG-YRLFSLNSIDTL---EQIYENSQE------------DVCIVERLFSSSLVAVVSLSSPRK 64 (79)
Q Consensus 2 ~~~fNQD~-sc~~vgt~~G-frIyn~~~~d~~---~~~~~~~~g------------~v~ivEmLf~snLlalVg~~~prk 64 (79)
++.|++|+ ..|++|..+| .+||++..-... ...+....+ ++.-+..--...++|..+ . +.
T Consensus 231 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~--~~ 307 (447)
T 3dw8_B 231 AAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y--LS 307 (447)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S--SE
T ss_pred EEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C--Ce
Confidence 68999998 8999999887 899986542221 123333222 666666655566776433 3 89
Q ss_pred EEEEeCCC-CeEE
Q psy6185 65 LTKEEGKN-EEEE 76 (79)
Q Consensus 65 L~I~d~~~-~~~I 76 (79)
++|||.++ ++.+
T Consensus 308 v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 308 VKVWDLNMENRPV 320 (447)
T ss_dssp EEEEETTCCSSCS
T ss_pred EEEEeCCCCcccc
Confidence 99999886 5443
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.039 Score=37.40 Aligned_cols=73 Identities=8% Similarity=-0.047 Sum_probs=47.4
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++.|++|+..+++|..+| .++|+++.-.+ ...+....+.+.-+...-.. +++.. ...+.++|||.++++.+..
T Consensus 252 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~l~~~--~~d~~i~i~d~~~~~~~~~ 325 (425)
T 1r5m_A 252 VLEFNDTNKLLLSASDDGTLRIWHGGNGNS-QNCFYGHSQSIVSASWVGDD-KVISC--SMDGSVRLWSLKQNTLLAL 325 (425)
T ss_dssp EEEEETTTTEEEEEETTSCEEEECSSSBSC-SEEECCCSSCEEEEEEETTT-EEEEE--ETTSEEEEEETTTTEEEEE
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCCcc-ceEecCCCccEEEEEECCCC-EEEEE--eCCCcEEEEECCCCcEeEe
Confidence 678999999999999776 89998654222 22333344555444443333 44443 3457999999988877653
No 49
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.028 Score=40.01 Aligned_cols=74 Identities=7% Similarity=-0.065 Sum_probs=50.2
Q ss_pred eeeccCC---CCEEEEEcCC-ceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKG---LLSLSVGTKS-GYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD---~sc~~vgt~~-GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
++.|++| +..+++|..+ -.+||++..-...........+.+.-+..- ..+++|..+ ..+.|+|||.++++.+.
T Consensus 200 ~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~--~d~~v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 200 DVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG--GDDKIFAWDWKTGKNLS 276 (450)
T ss_dssp EEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE--SSSEEEEEETTTCCEEE
T ss_pred EEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe--CCCeEEEEECCCCcEee
Confidence 6889999 8788877776 589998653222222232345666666666 677777554 45799999999887665
Q ss_pred e
Q psy6185 78 K 78 (79)
Q Consensus 78 ~ 78 (79)
.
T Consensus 277 ~ 277 (450)
T 2vdu_B 277 T 277 (450)
T ss_dssp E
T ss_pred e
Confidence 3
No 50
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.38 E-value=0.027 Score=40.43 Aligned_cols=73 Identities=15% Similarity=0.013 Sum_probs=49.5
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeec-cCCCeEEEEEec----------ccceEEEeccCCCcEEEEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYEN-SQEDVCIVERLF----------SSSLVAVVSLSSPRKLTKEE 69 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~-~~g~v~ivEmLf----------~snLlalVg~~~prkL~I~d 69 (79)
++.|++|+..+++|..+| .+||+++.-++.. .+.. ..+.+.-+..-- ...+||..+ .-+.++|||
T Consensus 493 ~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~--~dg~i~iw~ 569 (615)
T 1pgu_A 493 YISISPSETYIAAGDVMGKILLYDLQSREVKT-SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS--LDTNIFIYS 569 (615)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEE-CCSCCCSSCEEEEEECCCC------CCSCCEEEEEE--TTSCEEEEE
T ss_pred EEEECCCCCEEEEcCCCCeEEEeeCCCCccee-EeecCCCCceeEEEEcCccccccccccCCCEEEEEc--CCCcEEEEE
Confidence 688999999999998875 8999865432222 2222 455666665555 567777654 346899999
Q ss_pred CCCC-eEEe
Q psy6185 70 GKNE-EEEK 77 (79)
Q Consensus 70 ~~~~-~~I~ 77 (79)
.+++ +.+.
T Consensus 570 ~~~~~~~~~ 578 (615)
T 1pgu_A 570 VKRPMKIIK 578 (615)
T ss_dssp SSCTTCCEE
T ss_pred CCCCceech
Confidence 8876 4443
No 51
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.36 E-value=0.02 Score=45.45 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=52.0
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
++.|++|+..+++|..+| .+||+.+.-.+ ...+....+.+..+...-..+-..++.+...+.+++||..+++.+.
T Consensus 662 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~ 737 (1249)
T 3sfz_A 662 CCAFSSDDSYIATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 737 (1249)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE
T ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCce-EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh
Confidence 789999999999998875 89998654222 2334445677777666554344444444566889999998877654
No 52
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.36 E-value=0.0088 Score=40.77 Aligned_cols=72 Identities=15% Similarity=-0.007 Sum_probs=45.5
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcc--------------hhheeee--ccCCCeEEEEEecccceEEEeccCCCcE
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSID--------------TLEQIYE--NSQEDVCIVERLFSSSLVAVVSLSSPRK 64 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d--------------~~~~~~~--~~~g~v~ivEmLf~snLlalVg~~~prk 64 (79)
++.|++|+..+++|..+| .++|+++.-+ +...... ...+.+.-+..--..+++|..+ ..+.
T Consensus 151 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~ 228 (377)
T 3dwl_C 151 SLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG--HDSS 228 (377)
T ss_dssp EEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE--TTTE
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEe--CCCc
Confidence 689999999999998886 8999864210 0111111 2345555555544556676654 4478
Q ss_pred EEEEeCCCCeE
Q psy6185 65 LTKEEGKNEEE 75 (79)
Q Consensus 65 L~I~d~~~~~~ 75 (79)
++|||..+++.
T Consensus 229 i~iwd~~~~~~ 239 (377)
T 3dwl_C 229 VTIAYPSAPEQ 239 (377)
T ss_dssp EC-CEECSTTS
T ss_pred EEEEECCCCCC
Confidence 99999877654
No 53
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.30 E-value=0.034 Score=39.41 Aligned_cols=73 Identities=10% Similarity=0.002 Sum_probs=50.8
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
+++|++|+..+++|..+| .+||+.+..+. ...+....+.+.-+...-..++++.. ...+.+++||..++..+.
T Consensus 155 ~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~-~~~~~~h~~~V~~v~~~p~~~~l~s~--s~D~~i~~wd~~~~~~~~ 228 (410)
T 1vyh_C 155 DISFDHSGKLLASCSADMTIKLWDFQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSA--SRDKTIKMWEVQTGYCVK 228 (410)
T ss_dssp EEEECTTSSEEEEEETTSCCCEEETTSSCE-EECCCCCSSCEEEEEECSSSSEEEEE--ETTSEEEEEETTTCCEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEEcCCCCCEEEEEEeCCCCEEEEE--eCCCeEEEEECCCCcEEE
Confidence 689999999999888875 89998654322 12233455677766666666776543 345799999998877654
No 54
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.18 E-value=0.024 Score=42.59 Aligned_cols=76 Identities=11% Similarity=0.071 Sum_probs=50.6
Q ss_pred CeeeccC-CCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEec--ccceEEEeccCCCcEEEEEeCCCCeEE
Q psy6185 1 MCSVPLK-GLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLF--SSSLVAVVSLSSPRKLTKEEGKNEEEE 76 (79)
Q Consensus 1 ~~~~fNQ-D~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf--~snLlalVg~~~prkL~I~d~~~~~~I 76 (79)
+++.|++ |+..+++|..+| .++|+++.-.+.........+++..+..-. ..++++.. ...+.+++||..+++.+
T Consensus 144 ~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~--~~dg~i~~~d~~~~~~~ 221 (814)
T 3mkq_A 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA--SDDLTIKIWDYQTKSCV 221 (814)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEE--CTTSEEEEEETTTTEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEE--eCCCEEEEEECCCCcEE
Confidence 3688999 888999888876 889986543332222222336677766665 56666554 34579999998887766
Q ss_pred ee
Q psy6185 77 KK 78 (79)
Q Consensus 77 ~~ 78 (79)
..
T Consensus 222 ~~ 223 (814)
T 3mkq_A 222 AT 223 (814)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 55
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.018 Score=44.41 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=50.5
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCC-cchhheeeeccCCCeEEEEEecc--cceEEEeccCCCcEEEEEeCCCCe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNS-IDTLEQIYENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKEEGKNEE 74 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~-~d~~~~~~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~d~~~~~ 74 (79)
|+.|++|+..+++|..+| .+||++++ .......+....++|.-+..... .+++|..+ .-+.++|||..+++
T Consensus 14 ~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s--~Dg~I~vwd~~~~~ 88 (753)
T 3jro_A 14 DAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDGKVLIWKEENGR 88 (753)
T ss_dssp EECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE--TTSCEEEEEEETTE
T ss_pred EEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe--CCCeEEEEECCCCc
Confidence 789999999999998886 89998642 11112234445677777776655 77877664 34789999988765
No 56
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.042 Score=37.56 Aligned_cols=72 Identities=10% Similarity=-0.096 Sum_probs=44.5
Q ss_pred eeeccC--CCCEEEEEcCC-ceEEEecCCcchhheeee-ccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEE
Q psy6185 2 CSVPLK--GLLSLSVGTKS-GYRLFSLNSIDTLEQIYE-NSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEE 76 (79)
Q Consensus 2 ~~~fNQ--D~sc~~vgt~~-GfrIyn~~~~d~~~~~~~-~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I 76 (79)
++.|++ |+..++.|..+ -.++|+++.-.+ ..... .....+.-+..--..+++|. | ..-+.++|||.++++.+
T Consensus 130 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pdg~~las-g-~~dg~i~iwd~~~~~~~ 205 (343)
T 3lrv_A 130 YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKDSLLLAL-Y-SPDGILDVYNLSSPDQA 205 (343)
T ss_dssp EEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTTSCEEEE-E-CTTSCEEEEESSCTTSC
T ss_pred EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCCCCEEEE-E-cCCCEEEEEECCCCCCC
Confidence 688999 99999977766 589998654222 11121 22334544444444555544 3 45579999999887654
No 57
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=96.16 E-value=0.022 Score=38.79 Aligned_cols=70 Identities=14% Similarity=0.026 Sum_probs=47.5
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcc-hhheeeeccCCCeEEEEEecc--cceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSID-TLEQIYENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d-~~~~~~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~d~~~~ 73 (79)
++.|++|+..++.|..+| .+||+++.-. .+...+....+.|.-+..-.. .++||-.| .-++++|||.+++
T Consensus 18 ~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s--~D~~v~iWd~~~~ 91 (316)
T 3bg1_A 18 DAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCS--YDRKVIIWREENG 91 (316)
T ss_dssp EEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEE--TTSCEEEECCSSS
T ss_pred EeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEE--CCCEEEEEECCCC
Confidence 789999999999999886 8999864311 111234445677766665432 56776543 4478999998765
No 58
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.14 E-value=0.048 Score=38.39 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=50.1
Q ss_pred eeeccCCCCEEEEEcCCceEEEecCCcchhheeee--ccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLNSIDTLEQIYE--NSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~~~d~~~~~~~--~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
+++|+.+ ..+|||.+.-.+||+.+.-+ ..+.+. ...+.|.-+..--..+++|.- ..-+.++|||.++++.+..
T Consensus 110 ~l~wS~~-n~lAvgld~tV~lWd~~tg~-~~~~~~~~~~~~~V~sv~fspdg~~lasg--s~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 110 LVDWSSG-NVLAVALDNSVYLWSASSGD-ILQLLQMEQPGEYISSVAWIKEGNYLAVG--TSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp CEEECTT-SEEEEEETTEEEEEETTTCC-EEEEEECCSTTCCEEEEEECTTSSEEEEE--ETTSCEEEEETTTTEEEEE
T ss_pred eEEECCC-CEEEEEeCCEEEEEECCCCC-EEEEEEecCCCCcEEEEEECCCCCEEEEE--ECCCeEEEEEcCCCcEEEE
Confidence 4778765 48999999999999965422 223333 234557666666666777653 3447899999999887653
No 59
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.14 E-value=0.028 Score=38.55 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=46.0
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeecc--CCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENS--QEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~--~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
++.|++|+..|++|..+| .+||++..-.+. ..+..+ ..++.-+..--...++|. | ...+.++|||..++..+.
T Consensus 231 ~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~-g-~~d~~i~vwd~~~~~~~~ 306 (340)
T 1got_B 231 AICFFPNGNAFATGSDDATCRLFDLRADQEL-MTYSHDNIICGITSVSFSKSGRLLLA-G-YDDFNCNVWDALKADRAG 306 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTSSEEEE-E-ETTSEEEEEETTTCCEEE
T ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcEE-EEEccCCcccceEEEEECCCCCEEEE-E-CCCCeEEEEEcccCcEee
Confidence 688999999999999886 899986542221 122211 234444443334455544 3 455789999988776654
No 60
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.13 E-value=0.048 Score=37.86 Aligned_cols=73 Identities=11% Similarity=0.058 Sum_probs=50.4
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEeccc--ceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSS--SLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~s--nLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
+++|++|...++.|..+| .++|+++.-.+ ...+....+.+..+.+-... +++|.. ..-+++++||.++++.+.
T Consensus 159 ~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~g~~l~sg--s~Dg~v~~wd~~~~~~~~ 234 (354)
T 2pbi_B 159 ACSFTNSDMQILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSETGNTFVSG--GCDKKAMVWDMRSGQCVQ 234 (354)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECCCSSCCEEEEE--ETTSCEEEEETTTCCEEE
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEeCCCCeE-EEEEcCCCCCeEEEEEEeCCCCCEEEEE--eCCCeEEEEECCCCcEEE
Confidence 578999998888888775 89998654222 23344456777777776643 566543 344789999998877654
No 61
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.13 E-value=0.074 Score=35.17 Aligned_cols=71 Identities=10% Similarity=-0.055 Sum_probs=42.8
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
++.|++|+..|++|..+| .+||+++...+.. .+. ....+..+..-- .+.++..+ ..+.++|||.+.+..+.
T Consensus 220 ~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~-~~~~v~~~~~~~-~~~~~~~~--~d~~i~iwd~~~~~~~~ 291 (340)
T 4aow_A 220 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY-TLD-GGDIINALCFSP-NRYWLCAA--TGPSIKIWDLEGKIIVD 291 (340)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEETTTTEEEE-EEE-CSSCEEEEEECS-SSSEEEEE--ETTEEEEEETTTTEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEeccCceee-eec-CCceEEeeecCC-CCceeecc--CCCEEEEEECCCCeEEE
Confidence 688999999999988876 7899865432211 111 223343333322 23333332 34789999998876654
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.10 E-value=0.056 Score=36.23 Aligned_cols=72 Identities=10% Similarity=0.047 Sum_probs=49.7
Q ss_pred CeeeccCCCCEEEEEcCC-ceEEEecCCcc-hhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCe
Q psy6185 1 MCSVPLKGLLSLSVGTKS-GYRLFSLNSID-TLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEE 74 (79)
Q Consensus 1 ~~~~fNQD~sc~~vgt~~-GfrIyn~~~~d-~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~ 74 (79)
.++.|++|+..+++|..+ -.+||+.+.-+ .....+....+.+.-+..--..+++|..+ ..+.+++||..+++
T Consensus 12 ~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 12 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG--TDRNAYVWTLKGRT 85 (372)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE--TTSCEEEEEEETTE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc--CCCeEEEEECCCCe
Confidence 478999999999999666 58999864321 01223444556676666666677887654 34789999987765
No 63
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.08 E-value=0.039 Score=39.10 Aligned_cols=71 Identities=11% Similarity=0.002 Sum_probs=44.8
Q ss_pred eeeccC-CCCEEEEEcCCc-eEEEecCCcchhh-eeeeccCCCeEEEEEe-cccceEEEeccCCCcEEEEEeCCCCe
Q psy6185 2 CSVPLK-GLLSLSVGTKSG-YRLFSLNSIDTLE-QIYENSQEDVCIVERL-FSSSLVAVVSLSSPRKLTKEEGKNEE 74 (79)
Q Consensus 2 ~~~fNQ-D~sc~~vgt~~G-frIyn~~~~d~~~-~~~~~~~g~v~ivEmL-f~snLlalVg~~~prkL~I~d~~~~~ 74 (79)
|+.|++ +.+-+|+|..+| .+||+.+.-+... ..+....+.|.-+..- ...++|+-. ..-+.|+|||.+++.
T Consensus 124 ~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~--s~D~~v~iwd~~~~~ 198 (435)
T 4e54_B 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS--SMEGTTRLQDFKGNI 198 (435)
T ss_dssp EEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEE--CSSSCEEEEETTSCE
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEE--eCCCEEEEeeccCCc
Confidence 789997 567899999886 7999865322211 1122245666555543 245676544 344789999987654
No 64
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.97 E-value=0.083 Score=35.63 Aligned_cols=73 Identities=8% Similarity=-0.027 Sum_probs=46.1
Q ss_pred eeeccCCCC-EEEEEcCCc-eEEEecCCcchhheee---------------eccCCCeEEEEEecccceEEEeccCCCcE
Q psy6185 2 CSVPLKGLL-SLSVGTKSG-YRLFSLNSIDTLEQIY---------------ENSQEDVCIVERLFSSSLVAVVSLSSPRK 64 (79)
Q Consensus 2 ~~~fNQD~s-c~~vgt~~G-frIyn~~~~d~~~~~~---------------~~~~g~v~ivEmLf~snLlalVg~~~prk 64 (79)
++.|++|+. .|++|..+| .++|++..-......+ ....+.+.-+..--..+++|..+ ..+.
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~ 268 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG--TDNR 268 (408)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE--TTSC
T ss_pred EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec--CCCe
Confidence 688999998 587777765 8999865422111111 12335555555555566776554 3468
Q ss_pred EEEEeCCCCeEE
Q psy6185 65 LTKEEGKNEEEE 76 (79)
Q Consensus 65 L~I~d~~~~~~I 76 (79)
+++||..+++.+
T Consensus 269 i~vwd~~~~~~~ 280 (408)
T 4a11_B 269 MRLWNSSNGENT 280 (408)
T ss_dssp EEEEETTTCCBC
T ss_pred EEEEECCCCccc
Confidence 999998876543
No 65
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.061 Score=35.04 Aligned_cols=64 Identities=16% Similarity=0.037 Sum_probs=42.3
Q ss_pred eeeccCCCCEEEEEcCCce-EEEecCCcchhh--eeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSGY-RLFSLNSIDTLE--QIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEE 69 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~Gf-rIyn~~~~d~~~--~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d 69 (79)
++.|++|+..+++|..+|. ++|++...+..+ ..+....+.+.-+ -|..++++..+ ..+.+++||
T Consensus 64 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~l~~~~--~d~~i~~~d 130 (313)
T 3odt_A 64 SVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSL--SFQDGVVISGS--WDKTAKVWK 130 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEE--EEETTEEEEEE--TTSEEEEEE
T ss_pred EEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEE--EecCCEEEEEe--CCCCEEEEc
Confidence 6889999999999999875 788765432111 1233344555444 44777776553 457899999
No 66
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=95.95 E-value=0.18 Score=32.95 Aligned_cols=75 Identities=13% Similarity=-0.041 Sum_probs=50.6
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhh---eeeeccCCCeEEEE-EecccceEEEeccCCCcEEEEEeCCCCeEE
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLE---QIYENSQEDVCIVE-RLFSSSLVAVVSLSSPRKLTKEEGKNEEEE 76 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~---~~~~~~~g~v~ivE-mLf~snLlalVg~~~prkL~I~d~~~~~~I 76 (79)
++.|.+++..++.|..+| .+||+..+-+... .......+.+..+. .-+..+++.+.++...+.++|||...+...
T Consensus 155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~ 234 (318)
T 4ggc_A 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234 (318)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence 467888999998888886 7999865422111 11222345554443 345677887777788899999998877654
No 67
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.051 Score=35.43 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=44.3
Q ss_pred eeeccCCCCEEEEEcCCceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++.|++|+.-++.+.+.-.++|+++.-.+ ...+....+.+.-+..--...+++ + ...+.++|||.++++.+.+
T Consensus 230 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~--~-~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 230 CIKLLPNGDIVSCGEDRTVRIWSKENGSL-KQVITLPAISIWSVDCMSNGDIIV--G-SSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp EEEECTTSCEEEEETTSEEEEECTTTCCE-EEEEECSSSCEEEEEECTTSCEEE--E-ETTSCEEEEESCGGGCCC-
T ss_pred EEEEecCCCEEEEecCCEEEEEECCCCce-eEEEeccCceEEEEEEccCCCEEE--E-eCCCcEEEEeCCCCceeeh
Confidence 67899998644444455689998654322 223344445555554444444443 3 4457999999988766543
No 68
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.87 E-value=0.036 Score=38.53 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=45.5
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeecc--CCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENS--QEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~--~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
++.|++|+..|++|..+| .|||++..-.+ ...+..+ ..++.-+..--...++|. | ...+.++|||..+++.+.
T Consensus 245 ~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~~-g-~~d~~i~vwd~~~~~~~~ 320 (354)
T 2pbi_B 245 SVRYYPSGDAFASGSDDATCRLYDLRADRE-VAIYSKESIIFGASSVDFSLSGRLLFA-G-YNDYTINVWDVLKGSRVS 320 (354)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECTTSSEEEE-E-ETTSCEEEEETTTCSEEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCCCcccceeEEEEeCCCCEEEE-E-ECCCcEEEEECCCCceEE
Confidence 688999999999998886 89998643211 1122222 223444443333455543 3 455799999998776654
No 69
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.87 E-value=0.085 Score=39.38 Aligned_cols=73 Identities=11% Similarity=-0.021 Sum_probs=47.3
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeee-------ccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYE-------NSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~-------~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~ 73 (79)
+++|++|+.-++.|..+| .+||+...-++ ...+. ...+.|.-+..--...+||-. ...+.++|||..++
T Consensus 195 ~v~fspdg~~las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~--s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA--SADKTIKIWNVATL 271 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE--ETTSEEEEEETTTT
T ss_pred EEEECCCCCEEEEEECCCcEEEEECCCCcE-eeeeccccccccccCCCEEEEEECCCCCEEEEE--eCCCeEEEEeCCCC
Confidence 689999999998887774 89998543222 11221 234555555544445566544 34589999999887
Q ss_pred eEEe
Q psy6185 74 EEEK 77 (79)
Q Consensus 74 ~~I~ 77 (79)
+.+.
T Consensus 272 ~~~~ 275 (611)
T 1nr0_A 272 KVEK 275 (611)
T ss_dssp EEEE
T ss_pred ceee
Confidence 7654
No 70
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.84 E-value=0.034 Score=37.00 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=46.1
Q ss_pred eeeccCC--CCEEEEEcCCc-eEEEecCCcchhhe---eeecc--CCCeEEEEEecccceEEEeccCCCcEEEEEeCCC
Q psy6185 2 CSVPLKG--LLSLSVGTKSG-YRLFSLNSIDTLEQ---IYENS--QEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKN 72 (79)
Q Consensus 2 ~~~fNQD--~sc~~vgt~~G-frIyn~~~~d~~~~---~~~~~--~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~ 72 (79)
++.|++| +..+++|..+| .+||+++.-++... .+... .+.+.-+..--..++||..+ ..+.++|||..+
T Consensus 290 ~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~ 366 (366)
T 3k26_A 290 YMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC--DDASIWRWDRLR 366 (366)
T ss_dssp CCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE--TTSEEEEEEC--
T ss_pred EEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe--CCCEEEEEEecC
Confidence 5678888 99999999886 89999765443321 22222 46666666665677777654 457999999754
No 71
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.067 Score=42.63 Aligned_cols=70 Identities=6% Similarity=0.048 Sum_probs=47.0
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeee-ccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYE-NSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~-~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
|++|++|+..+|+|+.+| .+||+....+ .... ...++|.-+..-. -.+||-+ ..-+.++|||..+++.+.
T Consensus 22 ~lafspdg~~lAsgs~Dg~I~lw~~~~~~---~~~~~~~~~~V~~l~fsp-g~~L~S~--s~D~~v~lWd~~~~~~~~ 93 (902)
T 2oaj_A 22 AAAFDFTQNLLAIATVTGEVHIYGQQQVE---VVIKLEDRSAIKEMRFVK-GIYLVVI--NAKDTVYVLSLYSQKVLT 93 (902)
T ss_dssp EEEEETTTTEEEEEETTSEEEEECSTTCE---EEEECSSCCCEEEEEEET-TTEEEEE--ETTCEEEEEETTTCSEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCcE---EEEEcCCCCCEEEEEEcC-CCEEEEE--ECcCeEEEEECCCCcEEE
Confidence 789999999999999986 8899754322 2211 1234555555444 3445544 345899999998877664
No 72
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=95.73 E-value=0.1 Score=37.45 Aligned_cols=71 Identities=13% Similarity=0.019 Sum_probs=49.1
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
++.|.+|+..+++|..+| .+||+.+. .+...+....+.+.-+..--...+||..+ .-+.++|||. .++.+.
T Consensus 472 ~~~~spd~~~las~~~d~~i~iw~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~--~dg~v~lwd~-~~~~~~ 543 (577)
T 2ymu_A 472 GVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASAS--DDKTVKLWNR-NGQLLQ 543 (577)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSEEEEECT-TSCEEE
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEcCCC--CEEEEEeCCCCCEEEEEEcCCCCEEEEEE--CcCEEEEEeC-CCCEEE
Confidence 688999999999998886 79998432 22233444566777666666677887654 3478999994 455443
No 73
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.73 E-value=0.045 Score=38.35 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=46.2
Q ss_pred CeeeccCCCCEEEEEcCCceEEEecCCcchhheeeecc----------------CCCeEEEEEecc--cceEEEeccCCC
Q psy6185 1 MCSVPLKGLLSLSVGTKSGYRLFSLNSIDTLEQIYENS----------------QEDVCIVERLFS--SSLVAVVSLSSP 62 (79)
Q Consensus 1 ~~~~fNQD~sc~~vgt~~GfrIyn~~~~d~~~~~~~~~----------------~g~v~ivEmLf~--snLlalVg~~~p 62 (79)
.|+.|++|+.-+++|.+...+||+...-+.. ..+... .++..+-.+-|+ .+++|.. ..-
T Consensus 68 ~~v~fspdg~~la~g~~~~v~i~~~~~g~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~--~~d 144 (393)
T 1erj_A 68 CCVKFSNDGEYLATGCNKTTQVYRVSDGSLV-ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG--AED 144 (393)
T ss_dssp CEEEECTTSSEEEEECBSCEEEEETTTCCEE-EEECC-----------------CCCCBEEEEEECTTSSEEEEE--ETT
T ss_pred EEEEECCCCCEEEEEcCCcEEEEEecCCCEE-EEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE--cCC
Confidence 4789999999999999999999986432111 111110 112223334443 4566543 345
Q ss_pred cEEEEEeCCCCeEEe
Q psy6185 63 RKLTKEEGKNEEEEK 77 (79)
Q Consensus 63 rkL~I~d~~~~~~I~ 77 (79)
+.++|||..+++.+.
T Consensus 145 ~~i~iwd~~~~~~~~ 159 (393)
T 1erj_A 145 RLIRIWDIENRKIVM 159 (393)
T ss_dssp SCEEEEETTTTEEEE
T ss_pred CeEEEEECCCCcEEE
Confidence 799999998877654
No 74
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.063 Score=36.66 Aligned_cols=76 Identities=16% Similarity=0.046 Sum_probs=47.2
Q ss_pred CeeeccCC-CCEEEEEcCCc-eEEEecCCcc-------hhhe-eeeccCCCeEEEEEecc-cceEEEeccCCCcEEEEEe
Q psy6185 1 MCSVPLKG-LLSLSVGTKSG-YRLFSLNSID-------TLEQ-IYENSQEDVCIVERLFS-SSLVAVVSLSSPRKLTKEE 69 (79)
Q Consensus 1 ~~~~fNQD-~sc~~vgt~~G-frIyn~~~~d-------~~~~-~~~~~~g~v~ivEmLf~-snLlalVg~~~prkL~I~d 69 (79)
.++.|++| ...+++|..+| .+||+++.-+ ++.. ......+.+.-+..--. .+++|.. ...+.++|||
T Consensus 117 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg~v~iwd 194 (416)
T 2pm9_A 117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA--GSSNFASIWD 194 (416)
T ss_dssp CEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE--SSSSCEEEEE
T ss_pred EEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE--cCCCCEEEEE
Confidence 37899998 88888888775 7899865422 1111 11223445544444433 4566554 3457899999
Q ss_pred CCCCeEEee
Q psy6185 70 GKNEEEEKK 78 (79)
Q Consensus 70 ~~~~~~I~~ 78 (79)
.++++.+..
T Consensus 195 ~~~~~~~~~ 203 (416)
T 2pm9_A 195 LKAKKEVIH 203 (416)
T ss_dssp TTTTEEEEE
T ss_pred CCCCCcceE
Confidence 988877653
No 75
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.72 E-value=0.079 Score=37.25 Aligned_cols=77 Identities=13% Similarity=-0.059 Sum_probs=51.2
Q ss_pred eeeccCCCCEEEEEcCC-ceEEEecCCcchhh---eeeeccCCCeEEEEE-ecccceEEEeccCCCcEEEEEeCCCCeEE
Q psy6185 2 CSVPLKGLLSLSVGTKS-GYRLFSLNSIDTLE---QIYENSQEDVCIVER-LFSSSLVAVVSLSSPRKLTKEEGKNEEEE 76 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-GfrIyn~~~~d~~~---~~~~~~~g~v~ivEm-Lf~snLlalVg~~~prkL~I~d~~~~~~I 76 (79)
++.|++++..++.|..+ ..+||+..+-+... .......+.|..+.. -+..+++|..++...+.++|||..+++.+
T Consensus 235 ~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~ 314 (420)
T 4gga_A 235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE
T ss_pred eeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc
Confidence 46788899988888877 57888754422111 122223455543333 24678999888888899999999998776
Q ss_pred ee
Q psy6185 77 KK 78 (79)
Q Consensus 77 ~~ 78 (79)
..
T Consensus 315 ~~ 316 (420)
T 4gga_A 315 SA 316 (420)
T ss_dssp EE
T ss_pred ee
Confidence 53
No 76
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.67 E-value=0.076 Score=36.98 Aligned_cols=75 Identities=7% Similarity=-0.037 Sum_probs=46.3
Q ss_pred eeeccCCCCEEEEEcCCceEEEecCCcchh-heeee--ccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLNSIDTL-EQIYE--NSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~~~d~~-~~~~~--~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++.|.+|+..++.+.+.-.+||++..-++. ...+. ...+.|.-+..--..+++|.. ..-+.++|||..+++.+..
T Consensus 99 ~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sg--s~dg~v~iwd~~~~~~~~~ 176 (357)
T 4g56_B 99 DVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSG--GKDFSVKVWDLSQKAVLKS 176 (357)
T ss_dssp EEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEE--ETTSCEEEEETTTTEEEEE
T ss_pred EEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEE--eCCCeEEEEECCCCcEEEE
Confidence 688999998888887778999986432211 11111 234566666655555666544 3447899999999887754
No 77
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=95.59 E-value=0.17 Score=34.61 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=45.7
Q ss_pred eeec-----cC-CCCEEEEEcCCc-eEEEecCCcch---h---heeeeccCCCeEEEEEecccceEEEeccCCCcEEEEE
Q psy6185 2 CSVP-----LK-GLLSLSVGTKSG-YRLFSLNSIDT---L---EQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKE 68 (79)
Q Consensus 2 ~~~f-----NQ-D~sc~~vgt~~G-frIyn~~~~d~---~---~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~ 68 (79)
++.| ++ |+..++.|..+| .+||++..-+. . ...+....+.|.-+..--...++|- | ..-+.++||
T Consensus 26 ~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s-~-s~D~~v~lw 103 (343)
T 2xzm_R 26 SIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS-S-SWDKTLRLW 103 (343)
T ss_dssp EEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE-E-ETTSEEEEE
T ss_pred heeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE-E-cCCCcEEEE
Confidence 5666 54 888888888775 89998653211 0 1122334456655554444455543 3 445899999
Q ss_pred eCCCCeEEe
Q psy6185 69 EGKNEEEEK 77 (79)
Q Consensus 69 d~~~~~~I~ 77 (79)
|.++++.+.
T Consensus 104 d~~~~~~~~ 112 (343)
T 2xzm_R 104 DLRTGTTYK 112 (343)
T ss_dssp ETTSSCEEE
T ss_pred ECCCCcEEE
Confidence 998887664
No 78
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.51 E-value=0.12 Score=36.17 Aligned_cols=75 Identities=13% Similarity=-0.058 Sum_probs=48.0
Q ss_pred eeeccCCCCEEEEEcCCceEEEecCCcchhh---eeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLNSIDTLE---QIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~~~d~~~---~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++.|++|+..++.+.+.-.|||+++.-+... .......+.|.-+...-..++||-. ..-+.++|||..+++.+..
T Consensus 87 ~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sg--s~d~~i~iwd~~~~~~~~~ 164 (344)
T 4gqb_B 87 DLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSG--SKDICIKVWDLAQQVVLSS 164 (344)
T ss_dssp EEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEE--ETTSCEEEEETTTTEEEEE
T ss_pred EEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEE--eCCCeEEEEECCCCcEEEE
Confidence 6789999765544444458999875422211 1122345677777766666777654 3447899999999887653
No 79
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.50 E-value=0.15 Score=35.51 Aligned_cols=74 Identities=11% Similarity=0.034 Sum_probs=47.8
Q ss_pred eeeccC-CCCEEEEEcCC-ceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLK-GLLSLSVGTKS-GYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQ-D~sc~~vgt~~-GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
+++|+. |...|+.|..+ -.++|++....+....+....+.|.-+..--..+++|-. ..-+.++|||.++++.+.
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~--s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTG--SDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEE--CSSSCEEEEETTTTEEEE
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEE--cCCCeEEEEECCCCcEEE
Confidence 567776 77788877766 579998653222223344455666666655555666543 445789999998877653
No 80
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=95.50 E-value=0.18 Score=34.23 Aligned_cols=69 Identities=14% Similarity=0.031 Sum_probs=46.8
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~ 73 (79)
++.|++|+..++.|..+| .|||+++.-++ ...+....+++.-+..--..++++-. ..-+.++|||.+.+
T Consensus 70 ~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~--s~D~~i~vwd~~~~ 139 (319)
T 3frx_A 70 DCTLTADGAYALSASWDKTLRLWDVATGET-YQRFVGHKSDVMSVDIDKKASMIISG--SRDKTIKVWTIKGQ 139 (319)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSCEEEEE--ETTSCEEEEETTSC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCCe-eEEEccCCCcEEEEEEcCCCCEEEEE--eCCCeEEEEECCCC
Confidence 578999999988887765 89998654222 22344456777777666566666543 34578999998644
No 81
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.48 E-value=0.12 Score=35.53 Aligned_cols=70 Identities=17% Similarity=0.004 Sum_probs=47.1
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcc-hhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSID-TLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d-~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~ 73 (79)
+++|++|+..+++|..+| .+||+.+.-+ .....+....+.|.-+..--..+++|..+ .-+.++|||...+
T Consensus 66 ~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s--~D~~v~iwd~~~~ 137 (345)
T 3fm0_A 66 KVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS--RDKSVWVWEVDEE 137 (345)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEEECTT
T ss_pred EEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE--CCCeEEEEECCCC
Confidence 689999999999988774 7899864321 11123344556776666655677777654 3478999997654
No 82
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.47 E-value=0.13 Score=35.16 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=44.4
Q ss_pred eeeccCCC-CEEEEEcCCc-eEEEecCCcchhheeee--ccCCCeEEEEEec-ccceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKGL-LSLSVGTKSG-YRLFSLNSIDTLEQIYE--NSQEDVCIVERLF-SSSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD~-sc~~vgt~~G-frIyn~~~~d~~~~~~~--~~~g~v~ivEmLf-~snLlalVg~~~prkL~I~d~~~~ 73 (79)
|+.|++|+ ..+++|..+| .+||+.+.-+. ...+. ...+.+.-+..-- ..+++|.. ...+.++|||...+
T Consensus 78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~ 151 (383)
T 3ei3_B 78 SLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-TSFIQGMGPGDAITGMKFNQFNTNQLFVS--SIRGATTLRDFSGS 151 (383)
T ss_dssp EEEECSSCTTEEEEEEBTSCEEEEETTSTTC-EEEECCCSTTCBEEEEEEETTEEEEEEEE--ETTTEEEEEETTSC
T ss_pred EEEECCCCCCEEEEEcCCCeEEEEeCCCccc-ceeeecCCcCCceeEEEeCCCCCCEEEEE--eCCCEEEEEECCCC
Confidence 78999998 8888888774 89998654222 22222 2445555554433 34666654 34579999998753
No 83
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.13 Score=35.75 Aligned_cols=75 Identities=12% Similarity=0.160 Sum_probs=44.5
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCC--cchhheeee----------c--cCCCeEEEEEecc--cceEEEeccCCCcE
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNS--IDTLEQIYE----------N--SQEDVCIVERLFS--SSLVAVVSLSSPRK 64 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~--~d~~~~~~~----------~--~~g~v~ivEmLf~--snLlalVg~~~prk 64 (79)
++.|++|+..+++|..+| .+||+++. ......... . ..+.+.-+..++. .+++|.. ...+.
T Consensus 116 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~d~~ 193 (437)
T 3gre_A 116 QITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL--TNLSR 193 (437)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE--ETTSE
T ss_pred EEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE--eCCCe
Confidence 789999999999999886 78997631 111111110 1 1233333333332 4455443 34579
Q ss_pred EEEEeCCCCeEEee
Q psy6185 65 LTKEEGKNEEEEKK 78 (79)
Q Consensus 65 L~I~d~~~~~~I~~ 78 (79)
+++||.++++.+..
T Consensus 194 i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 194 VIIFDIRTLERLQI 207 (437)
T ss_dssp EEEEETTTCCEEEE
T ss_pred EEEEeCCCCeeeEE
Confidence 99999988877653
No 84
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=95.37 E-value=0.046 Score=36.31 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=45.2
Q ss_pred eeeccCCCC-EEEEEcCCc-eEEEec-CCcchhheeeec--cCCCeEEEEEecccceEEEeccCCCcEEEEEeCCC
Q psy6185 2 CSVPLKGLL-SLSVGTKSG-YRLFSL-NSIDTLEQIYEN--SQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKN 72 (79)
Q Consensus 2 ~~~fNQD~s-c~~vgt~~G-frIyn~-~~~d~~~~~~~~--~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~ 72 (79)
++.|++|+. .+++|..+| .++|++ +.-.. ..+.. ..+.+.-+...- .++++..+ ..+.+++||.++
T Consensus 61 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~--~d~~i~iwd~~~ 131 (342)
T 1yfq_A 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF--QALTNNEANLGICRICKYG-DDKLIAAS--WDGLIEVIDPRN 131 (342)
T ss_dssp EEEEEESSSEEEEEEETTSCEEEECSSSSSSE--EECBSCCCCSCEEEEEEET-TTEEEEEE--TTSEEEEECHHH
T ss_pred EEEECCCCCcEEEEEcCCCeEEEEEeccCCce--EeccccCCCCceEEEEeCC-CCEEEEEc--CCCeEEEEcccc
Confidence 688999999 888888775 889986 43221 23343 456666665555 67776543 457999999765
No 85
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=95.33 E-value=0.093 Score=37.18 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=43.8
Q ss_pred eeeccCCCC-EEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEeccc-ceEEEeccCCCcEEEEEeCCC
Q psy6185 2 CSVPLKGLL-SLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTKEEGKN 72 (79)
Q Consensus 2 ~~~fNQD~s-c~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~s-nLlalVg~~~prkL~I~d~~~ 72 (79)
+++||+++. .+++|..+| .+||++.........+....+.+.-++.--.. .++|..+ ..+.|+|||..+
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~--~d~~i~iwd~~~ 353 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSK 353 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE--TTSCCEEEEGGG
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe--CCCcEEEEeCCC
Confidence 789999987 677777664 89998754222122344445666665554444 3454443 347899999776
No 86
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.11 Score=34.70 Aligned_cols=70 Identities=16% Similarity=-0.033 Sum_probs=45.3
Q ss_pred eeeccCC--CCEEEEEcCCc-eEEEecCCcch-hheeeeccCCCeEEEEEecc--cceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKG--LLSLSVGTKSG-YRLFSLNSIDT-LEQIYENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD--~sc~~vgt~~G-frIyn~~~~d~-~~~~~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~d~~~~ 73 (79)
++.|+++ +..|++|..+| .+||+++.-.. ....+....+.+.-+...-. .++++..+ .-+.++|||...+
T Consensus 60 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~ 135 (379)
T 3jrp_A 60 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS--SDGKVSVVEFKEN 135 (379)
T ss_dssp EEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTSEEEEEECCTT
T ss_pred EEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEec--CCCcEEEEecCCC
Confidence 6788876 88888888876 89998643210 11222334566666655554 56776654 4478999998766
No 87
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=95.33 E-value=0.16 Score=35.61 Aligned_cols=70 Identities=6% Similarity=0.065 Sum_probs=45.4
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEE
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEE 76 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I 76 (79)
++.|++|+.-+++|..+| .++|+.+.-.+ ...+....+.+..+. ++-++++..+ ..+.+++||..+....
T Consensus 315 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~--~~~~~l~s~s--~dg~v~vwd~~~~~~~ 385 (464)
T 3v7d_B 315 STIYDHERKRCISASMDTTIRIWDLENGEL-MYTLQGHTALVGLLR--LSDKFLVSAA--ADGSIRGWDANDYSRK 385 (464)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE--ECSSEEEEEE--TTSEEEEEETTTCCEE
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEEeCCCCcEEEEE--EcCCEEEEEe--CCCcEEEEECCCCcee
Confidence 678999999999999886 89998654222 223333445554444 4556665443 4468888988776544
No 88
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.31 E-value=0.043 Score=37.60 Aligned_cols=72 Identities=7% Similarity=-0.028 Sum_probs=45.0
Q ss_pred eeeccCCCC-EEEEEcCCc-eEEEecCCcchhheeee--ccCCCeEEEEEec-ccceEEEeccCCCcEEEEEeCCCCeE
Q psy6185 2 CSVPLKGLL-SLSVGTKSG-YRLFSLNSIDTLEQIYE--NSQEDVCIVERLF-SSSLVAVVSLSSPRKLTKEEGKNEEE 75 (79)
Q Consensus 2 ~~~fNQD~s-c~~vgt~~G-frIyn~~~~d~~~~~~~--~~~g~v~ivEmLf-~snLlalVg~~~prkL~I~d~~~~~~ 75 (79)
++.|++|+. .+++|..+| .+||++...++-..... ...+.+.-+..-- ..+++|..+ ..+.++|||.++++.
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~--~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD--QRNEIRVYSSYDWSK 285 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEE--SSSEEEEEETTBTTS
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEc--CCCcEEEEECCCCcc
Confidence 688999998 788877775 89998654211111111 2345555554443 456776543 347999999876554
No 89
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=95.31 E-value=0.26 Score=33.63 Aligned_cols=69 Identities=13% Similarity=-0.010 Sum_probs=46.5
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~ 73 (79)
++.|++|+..++.|..+| .+||+++.-.. ...+....+.+.-+..--..+++|..| ..+.++|||...+
T Consensus 81 ~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~~l~s~~--~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 81 DLALSQENCFAISSSWDKTLRLWDLRTGTT-YKRFVGHQSEVYSVAFSPDNRQILSAG--AEREIKLWNILGE 150 (343)
T ss_dssp EEEECSSTTEEEEEETTSEEEEEETTSSCE-EEEEECCCSCEEEEEECSSTTEEEEEE--TTSCEEEEESSSC
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcE-EEEEcCCCCcEEEEEECCCCCEEEEEc--CCCEEEEEeccCC
Confidence 688999999888877664 89998654222 223444556676666655566776544 4478999997643
No 90
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.24 E-value=0.18 Score=34.61 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=46.5
Q ss_pred eeeccCCCCEEEEEcCC-ceEEEecCCcchhh--eeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeE
Q psy6185 2 CSVPLKGLLSLSVGTKS-GYRLFSLNSIDTLE--QIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEE 75 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-GfrIyn~~~~d~~~--~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~ 75 (79)
++.|++|+..|+.|..+ -.+||+++.-++.. ..+....+.+.-+..--..+++|..+ ..+.++|||...+..
T Consensus 110 ~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s--~d~~i~~w~~~~~~~ 184 (345)
T 3fm0_A 110 SVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS--YDDTVKLYREEEDDW 184 (345)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEE--TTSCEEEEEEETTEE
T ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEe--CCCcEEEEEecCCCE
Confidence 68999999999988877 47999865422211 12233445565555544556666543 446899999877653
No 91
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.21 E-value=0.16 Score=35.68 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=43.9
Q ss_pred eeeccCCCCEEEEEcCC-ceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKS-GYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
|++| |+..+++|..+ -.+||+.+.-+. ...+....+++.- +-|..+++|..+ ..+.++|||..+++.+.
T Consensus 138 ~~~~--d~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~--l~~~~~~l~sg~--~dg~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 138 CLQY--DDQKIVSGLRDNTIKIWDKNTLEC-KRILTGHTGSVLC--LQYDERVIITGS--SDSTVRVWDVNTGEMLN 207 (435)
T ss_dssp EEEC--CSSEEEEEESSSCEEEEESSSCCE-EEEECCCSSCEEE--EECCSSEEEEEE--TTSCEEEEESSSCCEEE
T ss_pred EEEE--CCCEEEEEeCCCeEEEEeCCCCeE-EEEEcCCCCcEEE--EEECCCEEEEEc--CCCeEEEEECCCCcEEE
Confidence 4555 77888888877 489998654222 2233434455543 445777775543 44789999988877664
No 92
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.09 E-value=0.19 Score=34.98 Aligned_cols=74 Identities=19% Similarity=0.112 Sum_probs=45.2
Q ss_pred CeeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeecc-------CCCeEEEEEecccceEEEeccCCCcEEEEEeCCC
Q psy6185 1 MCSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENS-------QEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKN 72 (79)
Q Consensus 1 ~~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~-------~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~ 72 (79)
.++.|++|+..|+.|..+| .+||++..-.+. ..+... .+.+.-+..--...++|. | .....++|||..+
T Consensus 253 ~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g-~~dg~i~vwd~~~ 329 (380)
T 3iz6_a 253 NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL-QVYNREPDRNDNELPIVTSVAFSISGRLLFA-G-YSNGDCYVWDTLL 329 (380)
T ss_dssp CEEEECTTSSEEEEECSSSCEEEEETTTTEEE-EEECCCCSSSCCSSCSCSEEEECSSSSEEEE-E-CTTSCEEEEETTT
T ss_pred EEEEEecCCCeEEEEcCCCeEEEEECCCCcEE-EEecccccccccccCceEEEEECCCCCEEEE-E-ECCCCEEEEECCC
Confidence 3789999999999998885 799986542221 122211 122333333334445543 3 5568999999887
Q ss_pred CeEEe
Q psy6185 73 EEEEK 77 (79)
Q Consensus 73 ~~~I~ 77 (79)
++.+.
T Consensus 330 ~~~~~ 334 (380)
T 3iz6_a 330 AEMVL 334 (380)
T ss_dssp CCEEE
T ss_pred CceEE
Confidence 76543
No 93
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.01 E-value=0.092 Score=37.18 Aligned_cols=69 Identities=10% Similarity=0.014 Sum_probs=43.2
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccc-eEEEeccCCCcEEEEEeCCCCe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSS-LVAVVSLSSPRKLTKEEGKNEE 74 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~sn-LlalVg~~~prkL~I~d~~~~~ 74 (79)
++.|++|+..+++|..+| .++|+++. .+ -..+....+.|.-+..--..+ ++|. | ..-+.++|||.++.+
T Consensus 214 ~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~-~~~~~~h~~~v~~v~~~p~~~~~~~s-~-s~d~~v~iwd~~~~~ 284 (435)
T 4e54_B 214 SLDVSASSRMVVTGDNVGNVILLNMDG-KE-LWNLRMHKKKVTHVALNPCCDWFLAT-A-SVDQTVKIWDLRQVR 284 (435)
T ss_dssp CEEEETTTTEEEEECSSSBEEEEESSS-CB-CCCSBCCSSCEEEEEECTTCSSEEEE-E-ETTSBCCEEETTTCC
T ss_pred EEEECCCCCEEEEEeCCCcEeeeccCc-ce-eEEEecccceEEeeeecCCCceEEEE-e-cCcceeeEEeccccc
Confidence 678999999999999986 68888543 11 112233345665554432333 4443 3 334789999987654
No 94
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=94.98 E-value=0.1 Score=34.60 Aligned_cols=71 Identities=8% Similarity=-0.117 Sum_probs=42.3
Q ss_pred eeeccCCCCEEE-EEc----CCceEEEecCCcchhheeeeccCCCeEEEEEecc---cceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKGLLSLS-VGT----KSGYRLFSLNSIDTLEQIYENSQEDVCIVERLFS---SSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD~sc~~-vgt----~~GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~---snLlalVg~~~prkL~I~d~~~~ 73 (79)
++.|++|+..++ +|. +.-.+||+++.-+..........+++.-+..--. -+++|..+ ..+.+++||..++
T Consensus 23 ~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~ 100 (357)
T 3i2n_A 23 DCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD--FGGNLHIWNLEAP 100 (357)
T ss_dssp EEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE--TTSCEEEECTTSC
T ss_pred EEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec--CCCeEEEEeCCCC
Confidence 689999997664 554 4469999875422111111123455555544333 26666543 3478999998876
Q ss_pred e
Q psy6185 74 E 74 (79)
Q Consensus 74 ~ 74 (79)
+
T Consensus 101 ~ 101 (357)
T 3i2n_A 101 E 101 (357)
T ss_dssp S
T ss_pred C
Confidence 5
No 95
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=94.98 E-value=0.19 Score=33.28 Aligned_cols=72 Identities=14% Similarity=0.048 Sum_probs=41.8
Q ss_pred eccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCC----CeEEEEE----ecccceEEEeccCCCcEEEEEeCCCCe
Q psy6185 4 VPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQE----DVCIVER----LFSSSLVAVVSLSSPRKLTKEEGKNEE 74 (79)
Q Consensus 4 ~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g----~v~ivEm----Lf~snLlalVg~~~prkL~I~d~~~~~ 74 (79)
+|++|+..+++|..+| .++|+++.-+.....+....+ .+.-+.. --..++++.. ...+.+++||.++++
T Consensus 124 ~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~ 201 (357)
T 3i2n_A 124 GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG--YDNGDIKLFDLRNMA 201 (357)
T ss_dssp GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE--ETTSEEEEEETTTTE
T ss_pred ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEE--ccCCeEEEEECccCc
Confidence 6899999999998885 899986543211222322222 3322221 1244555443 345799999998877
Q ss_pred EEe
Q psy6185 75 EEK 77 (79)
Q Consensus 75 ~I~ 77 (79)
.+.
T Consensus 202 ~~~ 204 (357)
T 3i2n_A 202 LRW 204 (357)
T ss_dssp EEE
T ss_pred eee
Confidence 643
No 96
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=94.78 E-value=0.057 Score=36.77 Aligned_cols=69 Identities=12% Similarity=0.037 Sum_probs=41.7
Q ss_pred eeeccCCCCEEEEEcCCceEEEecCCcchhheeeecc------CCCeEEEEEecc--cceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLNSIDTLEQIYENS------QEDVCIVERLFS--SSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~~~d~~~~~~~~~------~g~v~ivEmLf~--snLlalVg~~~prkL~I~d~~~~ 73 (79)
++.|++|+.-++++..+|.+||+.++-.... .+... ...-.+..+-|+ ..+||. +..-+.++|||..++
T Consensus 242 ~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s--g~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 242 SLAFSPNRYWLAAATATGIKVFSLDPQYLVD-DLRPEFAGYSKAAEPHAVSLAWSADGQTLFA--GYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEECSSSSEEEEEETTEEEEEEETTEEEEE-EECCCCTTCCGGGCCCEEEEEECTTSSEEEE--EETTSCEEEEEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCcCeeee-ccCccccccccCcCcceeEEEECCCCCEEEE--eecCceEEEEEEeec
Confidence 6789999999999999999999865421111 11111 011122334443 345543 245578999997654
No 97
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=94.72 E-value=0.28 Score=36.89 Aligned_cols=69 Identities=17% Similarity=0.096 Sum_probs=47.7
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~ 73 (79)
++.|++|+..++.|..+| .|||++..- .....+....++|.-+..--..++++-. ..-+.++|||...+
T Consensus 435 ~v~~s~~g~~l~sgs~Dg~v~vwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~--s~D~~i~iwd~~~~ 504 (694)
T 3dm0_A 435 DVVLSSDGQFALSGSWDGELRLWDLAAG-VSTRRFVGHTKDVLSVAFSLDNRQIVSA--SRDRTIKLWNTLGE 504 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECTTSSCEEEE--ETTSCEEEECTTSC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCC-cceeEEeCCCCCEEEEEEeCCCCEEEEE--eCCCEEEEEECCCC
Confidence 688999999999888775 899986432 2223344456777666665566676544 34578999997544
No 98
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=94.67 E-value=0.18 Score=33.29 Aligned_cols=76 Identities=14% Similarity=-0.011 Sum_probs=45.5
Q ss_pred eeccCCCCEEEEEcCC-ceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 3 SVPLKGLLSLSVGTKS-GYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 3 ~~fNQD~sc~~vgt~~-GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
..+.++...++.|..+ -.++|+.....+.........+.+..+..-....-..++.+...+.+++||.++++.+..
T Consensus 134 ~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~ 210 (340)
T 4aow_A 134 VAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 210 (340)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE
Confidence 4566777777777766 578887543222112222345667776665554433334444557899999998877643
No 99
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=94.34 E-value=0.44 Score=33.08 Aligned_cols=73 Identities=11% Similarity=0.028 Sum_probs=48.2
Q ss_pred eeeccCCCCEEEEEcCCceEEEecCCcchhheeeec-cCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLNSIDTLEQIYEN-SQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~~~d~~~~~~~~-~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
+++|+. ...++++.+.-.+||+.+.-+. ...... ..+.+.-+..--..+++|..+ ....++|||..+++.+..
T Consensus 98 ~~~~s~-~~l~~~~~d~~v~lw~~~~~~~-~~~~~~~~~~~v~~v~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~ 171 (401)
T 4aez_A 98 LLDWSN-LNVVAVALERNVYVWNADSGSV-SALAETDESTYVASVKWSHDGSFLSVGL--GNGLVDIYDVESQTKLRT 171 (401)
T ss_dssp CEEECT-TSEEEEEETTEEEEEETTTCCE-EEEEECCTTCCEEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEEE
T ss_pred EEeecC-CCEEEEECCCeEEEeeCCCCcE-eEeeecCCCCCEEEEEECCCCCEEEEEC--CCCeEEEEECcCCeEEEE
Confidence 356665 4578888888899999654222 222332 456677766666667776654 346899999888776653
No 100
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=94.16 E-value=0.49 Score=35.22 Aligned_cols=68 Identities=7% Similarity=-0.034 Sum_probs=48.3
Q ss_pred eeeccCCCCEEEEEcCCceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCC
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKN 72 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~ 72 (79)
+++|++|+.-++.|..+-.++++.+.-. ....+....+.|..+..--.-.+||--+ .-+.++|||..+
T Consensus 23 ~~~~spdg~~l~~~~~~~v~l~~~~~~~-~~~~~~~h~~~v~~~~~spdg~~lasg~--~d~~v~lWd~~~ 90 (611)
T 1nr0_A 23 VLGNTPAGDKIQYCNGTSVYTVPVGSLT-DTEIYTEHSHQTTVAKTSPSGYYCASGD--VHGNVRIWDTTQ 90 (611)
T ss_dssp CCEECTTSSEEEEEETTEEEEEETTCSS-CCEEECCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEESSS
T ss_pred EEeeCCCCCEEEeCCCCEEEEecCCCcc-cCeEecCCCCceEEEEECCCCcEEEEEe--CCCCEEEeECCC
Confidence 5789999999999998889999864311 2234555567777766655566776543 357899999764
No 101
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=94.15 E-value=0.22 Score=33.99 Aligned_cols=70 Identities=13% Similarity=0.072 Sum_probs=43.8
Q ss_pred eeeccCCCCEEEEEcCC-ceEEEecCCc-chhh--eeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKGLLSLSVGTKS-GYRLFSLNSI-DTLE--QIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-GfrIyn~~~~-d~~~--~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~ 73 (79)
++.|++|+..++.|..+ -.+||+++.. .+.+ ..+....+.+.-+.---..++||-. ..-+.++|||..++
T Consensus 112 ~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~--s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 112 GVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS--SYDDTVRIWKDYDD 185 (330)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEE--ETTSCEEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEE--cCCCeEEEEECCCC
Confidence 68999999999988877 4899986321 1111 1233344555554443345566543 34478999997654
No 102
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=94.13 E-value=0.5 Score=35.51 Aligned_cols=74 Identities=11% Similarity=0.031 Sum_probs=48.0
Q ss_pred eeeccCCC--CEEEEEc-CCceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGL--LSLSVGT-KSGYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~--sc~~vgt-~~GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
|+.|+++. ..++.|. +.-.+||++... .+...+....+.+.-+..--..+++|..| .-+.++|||..+++.+..
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~sg~--~Dg~i~iwd~~~~~~~~~ 598 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGG--KDGVVLLWDLAEGKKLYS 598 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSBCEEEETTTTEEEEC
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCceEEE
Confidence 67888876 3555555 557999986542 22333444567777777666667776543 347888999888776643
No 103
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=94.08 E-value=0.72 Score=31.28 Aligned_cols=74 Identities=7% Similarity=-0.071 Sum_probs=45.1
Q ss_pred eeeccCCCCEE-EEE-cCCceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSL-SVG-TKSGYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~-~vg-t~~GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++.|++|+.-+ +.+ .+.-.++|+.+.-+. ...+.. .+.+.-+..--..+.+++.+ ...+.|.+||.++++.+..
T Consensus 36 ~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~-~~~v~~~~~spdg~~l~~~~-~~~~~v~v~d~~~~~~~~~ 111 (391)
T 1l0q_A 36 GAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPA-GSSPQGVAVSPDGKQVYVTN-MASSTLSVIDTTSNTVAGT 111 (391)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSSEEEEEE-TTTTEEEEEETTTTEEEEE
T ss_pred eEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEEC-CCCccceEECCCCCEEEEEE-CCCCEEEEEECCCCeEEEE
Confidence 68899999976 455 455688998543221 112221 22444444433456666655 4557899999998877643
No 104
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=94.04 E-value=0.68 Score=31.28 Aligned_cols=68 Identities=10% Similarity=0.102 Sum_probs=41.8
Q ss_pred eeeccCCC----CEEEEEcCC-ceEEEecCCc--ch-hheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCC
Q psy6185 2 CSVPLKGL----LSLSVGTKS-GYRLFSLNSI--DT-LEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGK 71 (79)
Q Consensus 2 ~~~fNQD~----sc~~vgt~~-GfrIyn~~~~--d~-~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~ 71 (79)
++.|++|+ ..++.|..+ -.+||+++.. .+ ....+....+.+.-+..--..++||..| .-+.++|||..
T Consensus 217 ~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~--~D~~v~lw~~~ 292 (316)
T 3bg1_A 217 DVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSG--GDNKVTLWKES 292 (316)
T ss_dssp EEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEE--SSSCEEEEEEC
T ss_pred EEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEc--CCCeEEEEEEC
Confidence 67899986 677777766 4899986541 11 1112233345565555444456776554 44789999965
No 105
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.23 Score=33.86 Aligned_cols=71 Identities=8% Similarity=-0.053 Sum_probs=40.9
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcc-hhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCC
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSID-TLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKN 72 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d-~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~ 72 (79)
++.|++|+..++.|..+| .|||+...-+ .+...+....+.|.-+..--..+-..++.+..-+.++|||...
T Consensus 158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 688999999999888775 7899743211 1112233344555444432221122233334557899999654
No 106
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=93.86 E-value=0.32 Score=34.12 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=40.0
Q ss_pred CCCEEEEEcCCc-eEEEecCCcchhheeeec---cCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 8 GLLSLSVGTKSG-YRLFSLNSIDTLEQIYEN---SQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 8 D~sc~~vgt~~G-frIyn~~~~d~~~~~~~~---~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++..+++|..+| .++|+...-++.. .+.. ..+.+ .-+-|..+++|..+ ..+.++|||.++++.+.+
T Consensus 328 ~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v--~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~ 397 (445)
T 2ovr_B 328 KDNILVSGNADSTVKIWDIKTGQCLQ-TLQGPNKHQSAV--TCLQFNKNFVITSS--DDGTVKLWDLKTGEFIRN 397 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEE-EECSTTSCSSCE--EEEEECSSEEEEEE--TTSEEEEEETTTCCEEEE
T ss_pred eCCEEEEEeCCCeEEEEECCCCcEEE-EEccCCCCCCCE--EEEEECCCEEEEEe--CCCeEEEEECCCCceeee
Confidence 455677777665 8899864422222 2221 22333 34445677766543 457999999998887754
No 107
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=93.84 E-value=0.39 Score=33.61 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=44.5
Q ss_pred eeeccCCCCEEEEEcCCceEEEecCCcchhheeeeccCCCeEEEEEeccc--ceEEEeccCCCcEEEEEeCCCCeE
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLNSIDTLEQIYENSQEDVCIVERLFSS--SLVAVVSLSSPRKLTKEEGKNEEE 75 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~s--nLlalVg~~~prkL~I~d~~~~~~ 75 (79)
++.|++|+..++.+.+.-.+||+++.-++ ...+....+.+.-+...... ++++.. ...+.+++||..++..
T Consensus 167 ~l~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~~l~s~--s~d~~i~vwd~~~~~~ 239 (464)
T 3v7d_B 167 ALKYAHGGILVSGSTDRTVRVWDIKKGCC-THVFEGHNSTVRCLDIVEYKNIKYIVTG--SRDNTLHVWKLPKESS 239 (464)
T ss_dssp EEEECSTTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEEEESSSCEEEEEE--ETTSCEEEEECCCCCC
T ss_pred EEEEcCCCEEEEEeCCCCEEEEECCCCcE-EEEECCCCCccEEEEEecCCCCCEEEEE--cCCCcEEEeeCCCCcc
Confidence 67898888444444444689998654222 23344456777777776533 455443 3457899999887653
No 108
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=93.82 E-value=0.59 Score=32.97 Aligned_cols=70 Identities=4% Similarity=-0.077 Sum_probs=41.9
Q ss_pred eeeccC-CCCEEEEEcCC-ceEEEecCCcc--hhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCC
Q psy6185 2 CSVPLK-GLLSLSVGTKS-GYRLFSLNSID--TLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKN 72 (79)
Q Consensus 2 ~~~fNQ-D~sc~~vgt~~-GfrIyn~~~~d--~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~ 72 (79)
++.|++ +..-|++|..+ -.+||++..-. .....+....+++..+..--....+.++|+ ..+.++|||.++
T Consensus 236 ~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~ 309 (430)
T 2xyi_A 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS-ADKTVALWDLRN 309 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTC
T ss_pred eeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEe-CCCeEEEEeCCC
Confidence 678888 67778777666 58999875421 112233334556655554443443333443 347899999876
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=93.74 E-value=1 Score=30.49 Aligned_cols=72 Identities=7% Similarity=-0.116 Sum_probs=44.2
Q ss_pred eeeccCCCCEEEEEc----CCceEEEecCCcchhheeeeccCCCeEEEEEecc--cceEEEeccCCCcEEEEEeCCCCeE
Q psy6185 2 CSVPLKGLLSLSVGT----KSGYRLFSLNSIDTLEQIYENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKEEGKNEEE 75 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt----~~GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~d~~~~~~ 75 (79)
++.|++|+.-+.++. +...++|+.+.-++. ..+... ..+ ..+-++ .+.+++.+ ...+++++||..+++.
T Consensus 204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~-~~~--~~~~~s~dg~~l~~s~-~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-ARIPVG-PDP--AGIAVTPDGKKVYVAL-SFXNTVSVIDTATNTI 278 (391)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-EEEECC-SSE--EEEEECTTSSEEEEEE-TTTTEEEEEETTTTEE
T ss_pred ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-EEEecC-CCc--cEEEEccCCCEEEEEc-CCCCEEEEEECCCCcE
Confidence 578999999888886 457888886432221 122222 222 223333 44554444 4458999999998887
Q ss_pred Eee
Q psy6185 76 EKK 78 (79)
Q Consensus 76 I~~ 78 (79)
+..
T Consensus 279 ~~~ 281 (391)
T 1l0q_A 279 TAT 281 (391)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=93.59 E-value=0.46 Score=33.60 Aligned_cols=27 Identities=11% Similarity=-0.118 Sum_probs=22.8
Q ss_pred CeeeccCCCCEEEEEcCCceEEEecCC
Q psy6185 1 MCSVPLKGLLSLSVGTKSGYRLFSLNS 27 (79)
Q Consensus 1 ~~~~fNQD~sc~~vgt~~GfrIyn~~~ 27 (79)
.|+.|+.|+.-++++.....++|++..
T Consensus 8 ~~v~~s~dg~~l~~~~~~~i~v~d~~~ 34 (450)
T 2vdu_B 8 QNLLTSRDGSLVFAIIKNCILSFKYQS 34 (450)
T ss_dssp CEEEECSSSSEEEEEETTEEEEEEEET
T ss_pred EEEEecCCCCEEEEEeCCeEEEEECCC
Confidence 378999999988888888999998543
No 111
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=92.99 E-value=0.89 Score=29.70 Aligned_cols=72 Identities=10% Similarity=-0.051 Sum_probs=43.1
Q ss_pred eeeccCCCCEEEEEcCCceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++.|++|+.-+.++ +...++|+.+.-+. ...+.... .+.-+..--..+.+++. ...+.|.+||.++++.+.+
T Consensus 245 ~~~~s~dg~~l~~~-~~~v~~~d~~~~~~-~~~~~~~~-~~~~~~~s~dg~~l~~~--~~~~~i~v~d~~~~~~~~~ 316 (337)
T 1pby_B 245 STAVNPAKTRAFGA-YNVLESFDLEKNAS-IKRVPLPH-SYYSVNVSTDGSTVWLG--GALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp EEEECTTSSEEEEE-ESEEEEEETTTTEE-EEEEECSS-CCCEEEECTTSCEEEEE--SBSSEEEEEETTTCCEEEE
T ss_pred eEEECCCCCEEEEe-CCeEEEEECCCCcC-cceecCCC-ceeeEEECCCCCEEEEE--cCCCcEEEEECcCCcEEEE
Confidence 47899999998888 67788888543211 11222111 22222222234555543 2358999999999887765
No 112
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=92.74 E-value=0.55 Score=29.75 Aligned_cols=73 Identities=8% Similarity=-0.059 Sum_probs=41.5
Q ss_pred eeeccCCCCEEEEEc--CCceEEEecCCc-chhheeeeccCCCeEEEEEecccceEEEeccC---------CCcEEEEEe
Q psy6185 2 CSVPLKGLLSLSVGT--KSGYRLFSLNSI-DTLEQIYENSQEDVCIVERLFSSSLVAVVSLS---------SPRKLTKEE 69 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt--~~GfrIyn~~~~-d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~---------~prkL~I~d 69 (79)
++.|++|+.-++++. +...+||..+.- .... .+....+.+.-+..--..++||+.+.. .+..|.+||
T Consensus 177 ~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 177 GPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE-RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE-ECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred cceECCCCCEEEEEecCCCCccEEEECCCCCCcE-EEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence 578999999877665 446889976431 1111 122112222222222244677777642 236799999
Q ss_pred CCCCeE
Q psy6185 70 GKNEEE 75 (79)
Q Consensus 70 ~~~~~~ 75 (79)
.+.++.
T Consensus 256 ~~~~~~ 261 (297)
T 2ojh_A 256 MDGGNV 261 (297)
T ss_dssp TTSCSC
T ss_pred cCCCCc
Confidence 876543
No 113
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=92.57 E-value=0.69 Score=32.18 Aligned_cols=73 Identities=12% Similarity=-0.052 Sum_probs=42.6
Q ss_pred CeeeccCCCCEEEEEcCCceEEEecCCcchhhe-eeeccCCCeEEEEEecccceEEEecc--CCCcEEEEEeCCCC
Q psy6185 1 MCSVPLKGLLSLSVGTKSGYRLFSLNSIDTLEQ-IYENSQEDVCIVERLFSSSLVAVVSL--SSPRKLTKEEGKNE 73 (79)
Q Consensus 1 ~~~~fNQD~sc~~vgt~~GfrIyn~~~~d~~~~-~~~~~~g~v~ivEmLf~snLlalVg~--~~prkL~I~d~~~~ 73 (79)
.++.|++|+..++.|.+++.++++...-..... ......+.+.-+.-.-..++++..+. ...-.+.+||.+..
T Consensus 180 ~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~ 255 (365)
T 4h5i_A 180 KDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSG 255 (365)
T ss_dssp CEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETT
T ss_pred EEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccc
Confidence 368999999999999999999997432111111 11112233443433334456665553 22336788886654
No 114
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=92.56 E-value=0.93 Score=31.71 Aligned_cols=70 Identities=6% Similarity=-0.015 Sum_probs=37.2
Q ss_pred eeeccCCCCEEEEEcCC-ceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKS-GYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++.| |+..+++|..+ -.++|+...-.+ ...+....+.+.. +-+..++++.. ...+.+++||.++++.+..
T Consensus 284 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~--~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~ 354 (445)
T 2ovr_B 284 SLQF--DGIHVVSGSLDTSIRVWDVETGNC-IHTLTGHQSLTSG--MELKDNILVSG--NADSTVKIWDIKTGQCLQT 354 (445)
T ss_dssp EEEE--CSSEEEEEETTSCEEEEETTTCCE-EEEECCCCSCEEE--EEEETTEEEEE--ETTSCEEEEETTTCCEEEE
T ss_pred EEEE--CCCEEEEEeCCCeEEEEECCCCCE-EEEEcCCcccEEE--EEEeCCEEEEE--eCCCeEEEEECCCCcEEEE
Confidence 4455 55666666655 477887543222 1122223333333 33456665543 3446888888877766543
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=92.49 E-value=0.6 Score=35.92 Aligned_cols=70 Identities=16% Similarity=-0.033 Sum_probs=45.8
Q ss_pred eeeccCC--CCEEEEEcCCc-eEEEecCCcch-hheeeeccCCCeEEEEEecc--cceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKG--LLSLSVGTKSG-YRLFSLNSIDT-LEQIYENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD--~sc~~vgt~~G-frIyn~~~~d~-~~~~~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~d~~~~ 73 (79)
++.|++| +..+++|..+| .+||+++.-.. ....+....+++.-+...-. .++++..+ ..+.++|||..++
T Consensus 58 ~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs--~dg~I~vwdl~~~ 133 (753)
T 3jro_A 58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS--SDGKVSVVEFKEN 133 (753)
T ss_dssp EEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTSEEEEEECCSS
T ss_pred EEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEe--CCCcEEEEEeecC
Confidence 6789877 88888888887 89998643210 11223334566666655544 56776654 4479999998776
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=92.46 E-value=1.8 Score=29.72 Aligned_cols=75 Identities=11% Similarity=-0.026 Sum_probs=45.9
Q ss_pred eeeccCCCCEEEEEcCC-ceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKS-GYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++.|++|+.-++.+..+ ..++|+.+.-.. ...+......+.-+..--..+.+++.+ ...+.+.+||.++++.+..
T Consensus 174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~d~~~~~~~~~ 249 (433)
T 3bws_A 174 TISIPEHNELWVSQMQANAVHVFDLKTLAY-KATVDLTGKWSKILLYDPIRDLVYCSN-WISEDISVIDRKTKLEIRK 249 (433)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTTCCE-EEEEECSSSSEEEEEEETTTTEEEEEE-TTTTEEEEEETTTTEEEEE
T ss_pred EEEEcCCCEEEEEECCCCEEEEEECCCceE-EEEEcCCCCCeeEEEEcCCCCEEEEEe-cCCCcEEEEECCCCcEEEE
Confidence 57788888888888765 678998643222 122332333444443333345554444 4457999999988877654
No 117
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=92.45 E-value=0.98 Score=32.66 Aligned_cols=67 Identities=10% Similarity=-0.141 Sum_probs=40.9
Q ss_pred eeeccCC-CCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCC
Q psy6185 2 CSVPLKG-LLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGK 71 (79)
Q Consensus 2 ~~~fNQD-~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~ 71 (79)
++.||++ ...|++|..+| .+||++..-.. ........+.+.-+..--.-++||..+ .-++++|||.+
T Consensus 154 ~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-~~~~~~~~~~v~~v~wspdg~~lasgs--~dg~v~iwd~~ 222 (434)
T 2oit_A 154 DMKWNPTVPSMVAVCLADGSIAVLQVTETVK-VCATLPSTVAVTSVCWSPKGKQLAVGK--QNGTVVQYLPT 222 (434)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEEESSSEE-EEEEECGGGCEEEEEECTTSSCEEEEE--TTSCEEEECTT
T ss_pred EEEECCCCCCEEEEEECCCeEEEEEcCCCcc-eeeccCCCCceeEEEEcCCCCEEEEEc--CCCcEEEEccC
Confidence 6889998 77888777775 89998643211 111111234555554444455666443 44789999987
No 118
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=92.42 E-value=1.2 Score=33.35 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=50.3
Q ss_pred eeeccCCCCEEEEEc--------CCceEEEecCCcchhheeee--c----cCCCeEEEEEecc--cceEEEe--cc-CCC
Q psy6185 2 CSVPLKGLLSLSVGT--------KSGYRLFSLNSIDTLEQIYE--N----SQEDVCIVERLFS--SSLVAVV--SL-SSP 62 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt--------~~GfrIyn~~~~d~~~~~~~--~----~~g~v~ivEmLf~--snLlalV--g~-~~p 62 (79)
.+.|.+|+.-+.|++ ..-.+||++++.+...+.+. . ..++-..+.+-|+ -..+.+- ++ ...
T Consensus 425 ~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~ 504 (543)
T 1nir_A 425 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDS 504 (543)
T ss_dssp CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSC
T ss_pred EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCC
Confidence 578999999999987 45899999765443212211 0 1234455566554 3444432 23 346
Q ss_pred cEEEEEeCCCCeEEeeC
Q psy6185 63 RKLTKEEGKNEEEEKKI 79 (79)
Q Consensus 63 rkL~I~d~~~~~~I~~~ 79 (79)
+.+.|||+++++++..|
T Consensus 505 ~~i~v~D~~t~~~~~~i 521 (543)
T 1nir_A 505 SALVVVDDKTLKLKAVV 521 (543)
T ss_dssp CEEEEEETTTTEEEEEE
T ss_pred CeEEEEECCCceEEEee
Confidence 89999999999887654
No 119
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=92.35 E-value=1.1 Score=29.49 Aligned_cols=72 Identities=8% Similarity=-0.097 Sum_probs=42.1
Q ss_pred eeccC-CCCEEEEEcCCceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEeeC
Q psy6185 3 SVPLK-GLLSLSVGTKSGYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKKI 79 (79)
Q Consensus 3 ~~fNQ-D~sc~~vgt~~GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~~ 79 (79)
+.|++ |+..+.++ ..-..+|+.+.-+. ...+... +...-+..--..+.|++ ++.+ +.|.+||.++++.+.+|
T Consensus 260 ~~~sp~dg~~l~~~-~~~v~~~d~~~~~~-~~~~~~~-~~~~~~~~s~dg~~l~~-~~~~-~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 260 GLRSPKDPNQIYGV-LNRLAKYDLKQRKL-IKAANLD-HTYYCVAFDKKGDKLYL-GGTF-NDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp EEECSSCTTEEEEE-ESEEEEEETTTTEE-EEEEECS-SCCCEEEECSSSSCEEE-ESBS-SEEEEEETTTTEEEEEE
T ss_pred eEecCCCCCEEEEE-cCeEEEEECccCeE-EEEEcCC-CCccceEECCCCCEEEE-ecCC-CeEEEEeccccceeeee
Confidence 56778 99999988 66788887543211 1122211 12222222222345655 4333 89999999998887653
No 120
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=92.31 E-value=1.5 Score=30.67 Aligned_cols=71 Identities=10% Similarity=0.070 Sum_probs=42.4
Q ss_pred eeeccCCCCEEEEEcCC-ceEEEecCCcchhh--eeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 2 CSVPLKGLLSLSVGTKS-GYRLFSLNSIDTLE--QIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-GfrIyn~~~~d~~~--~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++.|+. ..+++|..+ -.++|+.+.-.... ..+....+.+.-+.. ..++++..+ ..+.+++||..+++.+..
T Consensus 218 ~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~--~dg~i~vwd~~~~~~~~~ 291 (435)
T 1p22_A 218 HLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS--GDRTIKVWNTSTCEFVRT 291 (435)
T ss_dssp EEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE--TTSEEEEEETTTCCEEEE
T ss_pred EEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe--CCCeEEEEECCcCcEEEE
Confidence 567763 355555554 68999865422221 223334455555554 677776554 347899999888776643
No 121
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=92.27 E-value=0.7 Score=36.80 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.0
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecC
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLN 26 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~ 26 (79)
+++|++|+.-+|+|..+| .+||+.+
T Consensus 493 svafspdg~~LAsgs~DgtV~lwd~~ 518 (902)
T 2oaj_A 493 KISFAAETLELAVSIETGDVVLFKYE 518 (902)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred EEEecCCCCeEEEEecCcEEEEEEec
Confidence 689999999999999986 7889854
No 122
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=92.21 E-value=0.39 Score=37.83 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=42.5
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchh-------heee----eccCCCeEEEEEecccceEEEeccCCCcEEEEEe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTL-------EQIY----ENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEE 69 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~-------~~~~----~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d 69 (79)
+++|++|+.-+++|+++| .+||+.+. ..+ -..+ ..+.+.|.-+. |+-+=+|.. ..-|.+++||
T Consensus 134 svafSPDG~~LAsgs~DGtVkIWd~~~-~~l~~~~~i~l~ti~~~~~gh~~~V~sVa--wSPdgLaas--s~D~tVrlWd 208 (588)
T 2j04_A 134 CFEWNPIESSIVVGNEDGELQFFSIRK-NSENTPEFYFESSIRLSDAGSKDWVTHIV--WYEDVLVAA--LSNNSVFSMT 208 (588)
T ss_dssp EEEECSSSSCEEEEETTSEEEEEECCC-CTTTCCCCEEEEEEECSCTTCCCCEEEEE--EETTEEEEE--ETTCCEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCC-CccccccceeeeeeecccccccccEEEEE--EcCCcEEEE--eCCCeEEEEE
Confidence 689999999999999886 89999654 221 1122 11233444442 222223332 3459999999
Q ss_pred CCCCe
Q psy6185 70 GKNEE 74 (79)
Q Consensus 70 ~~~~~ 74 (79)
...+.
T Consensus 209 ~~~~~ 213 (588)
T 2j04_A 209 VSASS 213 (588)
T ss_dssp CCSSS
T ss_pred CCCCc
Confidence 87765
No 123
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=91.23 E-value=1.1 Score=28.23 Aligned_cols=71 Identities=8% Similarity=-0.150 Sum_probs=42.0
Q ss_pred eeeccCCCCEEEEEcCCceEEEecCC-cchhheeeecc-CCCeEEEEEecccceEEEeccC--CCcEEEEEeCCCC
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLNS-IDTLEQIYENS-QEDVCIVERLFSSSLVAVVSLS--SPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~~-~d~~~~~~~~~-~g~v~ivEmLf~snLlalVg~~--~prkL~I~d~~~~ 73 (79)
++.|++|+..++++.+...++|+.+. -++ ....... .+.+.-+..--...++|.++.. ...+|.+||...+
T Consensus 46 ~~~~spdg~~l~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 120 (297)
T 2ojh_A 46 APNWSPDGKYLLLNSEGLLYRLSLAGDPSP-EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG 120 (297)
T ss_dssp EEEECTTSSEEEEEETTEEEEEESSSCCSC-EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC
T ss_pred eeEECCCCCEEEEEcCCeEEEEeCCCCCCc-eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC
Confidence 67899999999999988899998654 222 2222211 2333333444455677777632 2356666665443
No 124
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=91.03 E-value=1.1 Score=33.62 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=45.1
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEeccc---ceEEEeccCCCcEEEEEeCCCCe
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSS---SLVAVVSLSSPRKLTKEEGKNEE 74 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~s---nLlalVg~~~prkL~I~d~~~~~ 74 (79)
|++|+.+. .+++|..+| .++|+++.-......+....+.|.-|...|+. +++|-. ..-+.++|||.++++
T Consensus 271 sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~--S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 271 TFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV--AVDGYFYIFNPKDIA 344 (524)
T ss_dssp EEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE--ETTSEEEEECGGGHH
T ss_pred EEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe--ccCCeEEEEECCCCC
Confidence 68898775 688888774 78998653111122344456777766556665 466554 345899999987643
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=90.85 E-value=0.91 Score=31.21 Aligned_cols=75 Identities=9% Similarity=-0.080 Sum_probs=42.7
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhhe----eeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEE
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQ----IYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEE 76 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~----~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I 76 (79)
++.|++++.-++++..+| .++|+.+.-+.... .+....+.+.-+..--..++++. +...+.+.+||.++++.+
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s--~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVS--QMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEE--EGGGTEEEEEETTTCCEE
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEE--ECCCCEEEEEECCCceEE
Confidence 578888777777776665 99998653222111 01112334444443223344433 345579999998887765
Q ss_pred ee
Q psy6185 77 KK 78 (79)
Q Consensus 77 ~~ 78 (79)
..
T Consensus 205 ~~ 206 (433)
T 3bws_A 205 AT 206 (433)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 126
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=90.72 E-value=0.79 Score=33.17 Aligned_cols=73 Identities=12% Similarity=0.048 Sum_probs=43.1
Q ss_pred eeeccCCCCEEEE----EcCC-ceEEEecCCc--------chhhe--eeeccCCCeEEEEEecc-cceEEEeccCCCcEE
Q psy6185 2 CSVPLKGLLSLSV----GTKS-GYRLFSLNSI--------DTLEQ--IYENSQEDVCIVERLFS-SSLVAVVSLSSPRKL 65 (79)
Q Consensus 2 ~~~fNQD~sc~~v----gt~~-GfrIyn~~~~--------d~~~~--~~~~~~g~v~ivEmLf~-snLlalVg~~~prkL 65 (79)
+++|++|+..+++ |..+ -.+||+++.. .++.. .+....+.+.-+..--. .+++|..+ .-+.|
T Consensus 97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s--~Dg~v 174 (434)
T 2oit_A 97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL--ADGSI 174 (434)
T ss_dssp EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE--TTSCE
T ss_pred EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE--CCCeE
Confidence 6899999999995 3333 5789975321 11111 11112344544443322 56777664 34789
Q ss_pred EEEeCCCCeEE
Q psy6185 66 TKEEGKNEEEE 76 (79)
Q Consensus 66 ~I~d~~~~~~I 76 (79)
+|||.+++..+
T Consensus 175 ~iwD~~~~~~~ 185 (434)
T 2oit_A 175 AVLQVTETVKV 185 (434)
T ss_dssp EEEEESSSEEE
T ss_pred EEEEcCCCcce
Confidence 99999877544
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=90.53 E-value=0.59 Score=32.73 Aligned_cols=72 Identities=6% Similarity=-0.164 Sum_probs=39.4
Q ss_pred eeeccC--------CCCEEEEEcCC-ceEEEecCCcchhheeeeccCCCeEEEEEecc-cceEEEeccCCCcEEEEEeCC
Q psy6185 2 CSVPLK--------GLLSLSVGTKS-GYRLFSLNSIDTLEQIYENSQEDVCIVERLFS-SSLVAVVSLSSPRKLTKEEGK 71 (79)
Q Consensus 2 ~~~fNQ--------D~sc~~vgt~~-GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~-snLlalVg~~~prkL~I~d~~ 71 (79)
++.|++ |+.-++.|..+ -.|||++..-.+.... ....+.+.-|..-=. .+++| +| ...+.++|||.+
T Consensus 141 ~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~-~~-~~d~~v~~wd~~ 217 (393)
T 4gq1_A 141 DIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG-YPLSSPGISVQFRPSNPNQLI-VG-ERNGNIRIFDWT 217 (393)
T ss_dssp EEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE-EECSSCEEEEEEETTEEEEEE-EE-ETTSEEEEEETT
T ss_pred EEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee-cCCCCCcEEEEECCCCCceEE-ec-CCCCEEEEEECC
Confidence 466764 77777777665 6999986432222222 223344433332211 23443 33 455899999988
Q ss_pred CCeEE
Q psy6185 72 NEEEE 76 (79)
Q Consensus 72 ~~~~I 76 (79)
+++..
T Consensus 218 t~~~~ 222 (393)
T 4gq1_A 218 LNLSA 222 (393)
T ss_dssp CCC--
T ss_pred CCccc
Confidence 77654
No 128
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=89.87 E-value=1.9 Score=29.09 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=40.7
Q ss_pred eeeccCCCCEEEEEcCC-----ceEEEecCCc-chhheeeecc--CCCeEEEEEecccceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKGLLSLSVGTKS-----GYRLFSLNSI-DTLEQIYENS--QEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-----GfrIyn~~~~-d~~~~~~~~~--~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~ 73 (79)
++.|++|+..+.++... ..++|.+++- ..++...... ......+.. .-+++++. ......+.+||...+
T Consensus 54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~-~~~~~~v~~~~~~~~ 130 (361)
T 3scy_A 54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTA-NYSGGSITVFPIGQD 130 (361)
T ss_dssp SEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEE-ETTTTEEEEEEBCTT
T ss_pred eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEE-ECCCCEEEEEEeCCC
Confidence 57899999988888873 7888986542 2222222211 122222222 55555444 356688999997644
No 129
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=89.80 E-value=3.1 Score=27.60 Aligned_cols=70 Identities=13% Similarity=-0.050 Sum_probs=40.1
Q ss_pred eeeccCC--CCEEEEEcCC-ceEEEecCCcc-hhheeeeccCCCeEEEEEecc--cceEEEeccCCCcEEEEEeCCCC
Q psy6185 2 CSVPLKG--LLSLSVGTKS-GYRLFSLNSID-TLEQIYENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKEEGKNE 73 (79)
Q Consensus 2 ~~~fNQD--~sc~~vgt~~-GfrIyn~~~~d-~~~~~~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~d~~~~ 73 (79)
++.|+++ +..|+.|..+ -.+||+.+.-. .....+....+++.-+..--. .+++|.. ..-+.++|||.+.+
T Consensus 58 ~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~--s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 58 RVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVA--SSDGKVSVVEFKEN 133 (297)
T ss_dssp EEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE--ETTSEEEEEEBCSS
T ss_pred EEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEE--ECCCcEEEEEecCC
Confidence 6788753 7778777766 48999865311 011122223455555444332 3456543 34478999997754
No 130
>2nwa_A Hypothetical protein YTMB; mostly beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Bacillus subtilis} SCOP: b.122.1.13
Probab=89.60 E-value=0.23 Score=30.57 Aligned_cols=34 Identities=18% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEcCCceEEEecCCcc-hhheeeec--cCCCeEEEEEe
Q psy6185 12 LSVGTKSGYRLFSLNSID-TLEQIYEN--SQEDVCIVERL 48 (79)
Q Consensus 12 ~~vgt~~GfrIyn~~~~d-~~~~~~~~--~~g~v~ivEmL 48 (79)
+-...+.||||| |+| |+...... +..+.++++-|
T Consensus 24 ~f~l~KeGYRiy---Pld~Pi~l~kt~~~e~~g~aiI~KL 60 (88)
T 2nwa_A 24 IFTLEKDGYRVY---PMEIPMDVRKTKFGEKSGTAEVQKL 60 (88)
T ss_dssp EEEEEEESCEEC---CSSSEEEEESSCC-CCCEEEEEEEE
T ss_pred EEEEEeCceEEe---eccCcEeeEeccCCeeeEEEEEEEE
Confidence 345678899999 775 65554422 34555555544
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=89.21 E-value=4.5 Score=28.64 Aligned_cols=72 Identities=8% Similarity=-0.168 Sum_probs=44.3
Q ss_pred eeeccCCCCEEEEEcCC----ceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccC-CCcEEEEEeCCCCeE
Q psy6185 2 CSVPLKGLLSLSVGTKS----GYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLS-SPRKLTKEEGKNEEE 75 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~----GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~-~prkL~I~d~~~~~~ 75 (79)
+++|++|+..++.+..+ -.++|+++.-.. . ......+.+.-+..--..+.||+++.. ....|.+||..+++.
T Consensus 183 ~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~ 259 (415)
T 2hqs_A 183 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-R-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI 259 (415)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-E-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-E-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE
Confidence 57899999999988776 467777543211 1 222233444443333345678877643 235799999877654
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=89.17 E-value=3.4 Score=27.18 Aligned_cols=75 Identities=4% Similarity=-0.102 Sum_probs=40.0
Q ss_pred eeeccCCCCEEEEEcCC--ceEEEecCCcchh-heeeeccCCCeEEEEEecccceEEEeccCCCc--EEEEEeCCCCeEE
Q psy6185 2 CSVPLKGLLSLSVGTKS--GYRLFSLNSIDTL-EQIYENSQEDVCIVERLFSSSLVAVVSLSSPR--KLTKEEGKNEEEE 76 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~--GfrIyn~~~~d~~-~~~~~~~~g~v~ivEmLf~snLlalVg~~~pr--kL~I~d~~~~~~I 76 (79)
++.|++|+.-+.++... ...+|+.+. ... ........++..-+..--..++++ ++....+ .|.+||.++++.+
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~ 121 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQL-EPPKVVAIQEGQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFI 121 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSS-SSCEEEEEEECSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEE
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCC-CceeEEecccCCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeE
Confidence 46899999866555543 455665432 222 222222222222022222345666 5533223 9999999888776
Q ss_pred ee
Q psy6185 77 KK 78 (79)
Q Consensus 77 ~~ 78 (79)
..
T Consensus 122 ~~ 123 (331)
T 3u4y_A 122 ST 123 (331)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 133
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=88.68 E-value=1.2 Score=33.43 Aligned_cols=66 Identities=11% Similarity=0.015 Sum_probs=40.5
Q ss_pred eeeccCCCCEEEEEcCC-ceEEEecCCcchhheeeeccCCCeEEEEEeccc--ceEEEeccCCCcEEEEEeCCC
Q psy6185 2 CSVPLKGLLSLSVGTKS-GYRLFSLNSIDTLEQIYENSQEDVCIVERLFSS--SLVAVVSLSSPRKLTKEEGKN 72 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~s--nLlalVg~~~prkL~I~d~~~ 72 (79)
+++|++|+..|++|..+ ..++|+..... +...+....+.|.-+. |+- ++|| ++..-+.++|||..+
T Consensus 360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-~~~~l~gH~~~V~sva--~Sp~g~~l~--Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 360 PVVYCPQIYSYIYSDGASSLRAVPSRAAF-AVHPLVSRETTITAIG--VSRLHPMVL--AGSADGSLIITNAAR 428 (524)
T ss_dssp CEEEETTTTEEEEECSSSEEEEEETTCTT-CCEEEEECSSCEEEEE--CCSSCCBCE--EEETTTEEECCBSCS
T ss_pred ceEeCCCcCeEEEeCCCCcEEEEECcccc-cceeeecCCCceEEEE--eCCCCCeEE--EEECCCEEEEEechH
Confidence 68999999999988777 49999864321 1122333445554443 332 3333 334557889998654
No 134
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=88.40 E-value=1.9 Score=33.97 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=42.5
Q ss_pred CeeeccCCCCEEEEEcCCceEEEecCCcchhh--eeee----ccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCe
Q psy6185 1 MCSVPLKGLLSLSVGTKSGYRLFSLNSIDTLE--QIYE----NSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEE 74 (79)
Q Consensus 1 ~~~~fNQD~sc~~vgt~~GfrIyn~~~~d~~~--~~~~----~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~ 74 (79)
++++|++|+ -++.+.+...++|+.+.-...+ ..+. ..+-++... -+.+|..+ .+.+++||.+.++
T Consensus 186 ~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-----g~~LASa~---~~tIkLWd~~~~~ 256 (588)
T 2j04_A 186 THIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-----DYKVVLTC---PGYVHKIDLKNYS 256 (588)
T ss_dssp EEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-----TTEEEEEC---SSEEEEEETTTTE
T ss_pred EEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-----CCEEEEEe---CCeEEEEECCCCe
Confidence 368999999 6677777799999864411100 1121 133444443 47777665 3899999988776
Q ss_pred E
Q psy6185 75 E 75 (79)
Q Consensus 75 ~ 75 (79)
.
T Consensus 257 ~ 257 (588)
T 2j04_A 257 I 257 (588)
T ss_dssp E
T ss_pred E
Confidence 5
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=86.99 E-value=4.6 Score=26.24 Aligned_cols=68 Identities=13% Similarity=0.005 Sum_probs=38.5
Q ss_pred eeeccCCCCEEEEEcC--CceEEEecCCc-chhheeeec-cCCCeEEEEEecccceEEEeccCCCcEEEEEeC
Q psy6185 2 CSVPLKGLLSLSVGTK--SGYRLFSLNSI-DTLEQIYEN-SQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEG 70 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~--~GfrIyn~~~~-d~~~~~~~~-~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~ 70 (79)
++.|++|+..++++.. ...++|++++- ..++..... ..+.+.-+..--..+.+++.+ ...+.+.+||.
T Consensus 42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~i~~~d~ 113 (343)
T 1ri6_A 42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGS-YNAGNVSVTRL 113 (343)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEE-TTTTEEEEEEE
T ss_pred eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEe-cCCCeEEEEEC
Confidence 5789999997777766 57889987531 122221111 112232233323344554444 45578999998
No 136
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=86.32 E-value=0.62 Score=32.62 Aligned_cols=24 Identities=17% Similarity=-0.032 Sum_probs=22.2
Q ss_pred eeeccCCCCEEEEEcCCceEEEec
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSL 25 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~ 25 (79)
+++|++|+..+|+|++.|..++.+
T Consensus 364 svafspdG~~LA~as~~Gv~lvrL 387 (393)
T 4gq1_A 364 DFCWHQDGSHLAIATEGSVLLTRL 387 (393)
T ss_dssp EEEECTTSSEEEEEESSEEEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEE
Confidence 689999999999999999999974
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=83.19 E-value=6.4 Score=29.33 Aligned_cols=75 Identities=12% Similarity=-0.006 Sum_probs=44.2
Q ss_pred eeeccCCCCEEEEEcCC-ceEEEecCCcchhheeeeccCCCeEEEEEeccc-----ceEEEeccCCCcEEEEEeCCCCeE
Q psy6185 2 CSVPLKGLLSLSVGTKS-GYRLFSLNSIDTLEQIYENSQEDVCIVERLFSS-----SLVAVVSLSSPRKLTKEEGKNEEE 75 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~s-----nLlalVg~~~prkL~I~d~~~~~~ 75 (79)
++.|++|+.-+.++..+ -.++|++++ +..+....-.. +-..-.+-|+- .=.++|+...++.+.|||..+.+.
T Consensus 183 ~v~~spdg~~l~v~~~d~~V~v~D~~~-~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 183 ISRMSASGRYLLVIGRDARIDMIDLWA-KEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 260 (543)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTS-SSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred eEEECCCCCEEEEECCCCeEEEEECcC-CCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence 46799999988877665 688888621 11222111111 22233334542 323455656678999999988877
Q ss_pred Eee
Q psy6185 76 EKK 78 (79)
Q Consensus 76 I~~ 78 (79)
+..
T Consensus 261 ~~~ 263 (543)
T 1nir_A 261 KQI 263 (543)
T ss_dssp EEE
T ss_pred cee
Confidence 654
No 138
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=82.97 E-value=6.6 Score=28.82 Aligned_cols=66 Identities=9% Similarity=0.116 Sum_probs=41.3
Q ss_pred eeeccCCCCEEEEEcCCceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCe
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEE 74 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~ 74 (79)
.++| |++-++++...+.++|++........ ......++.-+--+.. | +|++ .+-+.|.+||.+.+.
T Consensus 92 ~l~f--d~~~L~v~~~~~l~v~dv~sl~~~~~-~~~~~~~v~~i~~~~p-~-~av~--~~dG~L~v~dl~~~~ 157 (388)
T 1xip_A 92 FVCF--HGDQVLVSTRNALYSLDLEELSEFRT-VTSFEKPVFQLKNVNN-T-LVIL--NSVNDLSALDLRTKS 157 (388)
T ss_dssp EEEE--ETTEEEEEESSEEEEEESSSTTCEEE-EEECSSCEEEEEECSS-E-EEEE--ETTSEEEEEETTTCC
T ss_pred EEEE--CCCEEEEEcCCcEEEEEchhhhccCc-cceeecceeeEEecCC-C-EEEE--ECCCCEEEEEccCCc
Confidence 4788 99999999888999998654321111 1111233443333332 3 6666 345899999988654
No 139
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=80.97 E-value=12 Score=26.33 Aligned_cols=72 Identities=8% Similarity=0.066 Sum_probs=40.4
Q ss_pred eeeccCCCCEEEEEcCC-c-eEEE--ecCCcchhheeeeccCCCeEEEEEecccceEEEeccC-CCcEEEEEeCCCCeE
Q psy6185 2 CSVPLKGLLSLSVGTKS-G-YRLF--SLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLS-SPRKLTKEEGKNEEE 75 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-G-frIy--n~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~-~prkL~I~d~~~~~~ 75 (79)
+++|++|+.-++.+... | .+|| +.+.- .... .....+.+.-+..--.-.+||+.+.. ....|.+||..+++.
T Consensus 271 ~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~-~~~~-l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 271 EPTWFPDSQNLAFTSDQAGRPQVYKVNINGG-APQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 347 (415)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTSS-CCEE-CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred ceEECCCCCEEEEEECCCCCcEEEEEECCCC-CEEE-EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence 57899999988887764 3 3555 43321 1111 11122222222222345577777642 346899999887654
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=80.15 E-value=16 Score=27.12 Aligned_cols=71 Identities=10% Similarity=-0.050 Sum_probs=46.6
Q ss_pred eeeccCCCCEEEEEcCCceEEEecCCcc--hhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEE
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLNSID--TLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEE 76 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~~~d--~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I 76 (79)
.++|++|+.-++++...-.++|+++.-. .... +....+.+.-+..--....||+++. +.|.+||...++..
T Consensus 113 ~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~-l~~~~~~~~~~~~SPDG~~la~~~~---~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQ-LTHGEGFATDAKLSPKGGFVSFIRG---RNLWVIDLASGRQM 185 (741)
T ss_dssp CCEECTTSSEEEEEETTEEEEEESSSCSTTSCCB-CCCSSSCEEEEEECTTSSEEEEEET---TEEEEEETTTTEEE
T ss_pred eeEECCCCCEEEEEeCCcEEEEECCCCCcceEEE-cccCCcccccccCCCCCCEEEEEeC---CcEEEEecCCCCEE
Confidence 4689999999999998888888864320 1111 2222344544444445667888763 58999998876654
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=80.02 E-value=12 Score=29.73 Aligned_cols=72 Identities=7% Similarity=-0.121 Sum_probs=43.8
Q ss_pred eeeccCCCCEEEEEcCC-ceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEecc--------CCCcEEEEEeCCC
Q psy6185 2 CSVPLKGLLSLSVGTKS-GYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSL--------SSPRKLTKEEGKN 72 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~--------~~prkL~I~d~~~ 72 (79)
.+.|++|+.-++.+..+ -.++|+++. ...........+.+.-+..--....+|..+. ..++.|.+||..+
T Consensus 383 ~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 383 AMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred eeEECCCCCEEEEECCCCeEEEEECCC-CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 47899999999888776 577787543 1222233233333332322223456777654 2357999999887
Q ss_pred Ce
Q psy6185 73 EE 74 (79)
Q Consensus 73 ~~ 74 (79)
++
T Consensus 462 g~ 463 (1045)
T 1k32_A 462 RK 463 (1045)
T ss_dssp TE
T ss_pred Cc
Confidence 66
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=78.55 E-value=11 Score=24.54 Aligned_cols=73 Identities=14% Similarity=0.017 Sum_probs=38.1
Q ss_pred eeeccCCCCEEEEE-cC-Cc-eEEEecCCcchhhee-eeccCCCeEEEEEecc--cceEEEeccCCCcEEEEEeCCCCeE
Q psy6185 2 CSVPLKGLLSLSVG-TK-SG-YRLFSLNSIDTLEQI-YENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKEEGKNEEE 75 (79)
Q Consensus 2 ~~~fNQD~sc~~vg-t~-~G-frIyn~~~~d~~~~~-~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~d~~~~~~ 75 (79)
++.|++|+..+.++ .. .. .++|++++-..+... ......+-..-.+-|+ .+.+.+.+ ...+++.+||.++++.
T Consensus 132 ~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 132 GIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN-LIGNSIGILETQNPEN 210 (331)
T ss_dssp EEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE-TTTTEEEEEECSSTTS
T ss_pred ceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe-CCCCeEEEEECCCCcc
Confidence 57899999755544 43 45 789986541111100 0100111112233333 23444433 5567999999887776
No 143
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=76.09 E-value=14 Score=24.43 Aligned_cols=73 Identities=15% Similarity=0.027 Sum_probs=38.2
Q ss_pred eeeccCCCCEEEEEc--CCceEEEecCCcchhheeeeccCCCeEEEEEecc--cceEEEeccCCCcEEEEE--eCCCCeE
Q psy6185 2 CSVPLKGLLSLSVGT--KSGYRLFSLNSIDTLEQIYENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKE--EGKNEEE 75 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt--~~GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~--d~~~~~~ 75 (79)
.+.|.+|+.-+.++. +...++|++++-..++....-..++-..-.+-|+ .++|++.+ ...+.+.+| |.++++.
T Consensus 244 ~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 244 AIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVN-QNTDNATLYARDLTSGKL 322 (347)
T ss_dssp EEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEE-TTTTEEEEEEECTTTCCE
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEE-cCCCcEEEEEEeCCCCeE
Confidence 377999999775543 4568999865311222221111111111122233 34555444 455789999 6666553
No 144
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=74.72 E-value=6.3 Score=28.94 Aligned_cols=66 Identities=15% Similarity=0.004 Sum_probs=41.2
Q ss_pred eeeccCCCCEEEEEcCCceEEEecCCcch--------hheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCC
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLNSIDT--------LEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKN 72 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~~~d~--------~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~ 72 (79)
.+++.++...+++|..+|++|++++.+.. ++.....+..++. .+-|.-+++++. ....|.+||..+
T Consensus 42 lLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~V~--~l~fd~~~L~v~---~~~~l~v~dv~s 115 (388)
T 1xip_A 42 NLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVI--FVCFHGDQVLVS---TRNALYSLDLEE 115 (388)
T ss_dssp CEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEE--EEEEETTEEEEE---ESSEEEEEESSS
T ss_pred EEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCCee--EEEECCCEEEEE---cCCcEEEEEchh
Confidence 46778889999999999999997543221 1111111234444 444466666654 336899999654
No 145
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=74.47 E-value=15 Score=27.18 Aligned_cols=26 Identities=4% Similarity=-0.105 Sum_probs=20.5
Q ss_pred eeeccCCCCEEEEEcC-Cc------eEEEecCC
Q psy6185 2 CSVPLKGLLSLSVGTK-SG------YRLFSLNS 27 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~-~G------frIyn~~~ 27 (79)
.++|++|+.-++.+.. +| .++++.+.
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~ 73 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS 73 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTT
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCC
Confidence 5789999999998887 66 77777543
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=74.10 E-value=10 Score=27.96 Aligned_cols=69 Identities=4% Similarity=-0.138 Sum_probs=39.4
Q ss_pred eeeccCCCCEEEEEcC----------CceEEEecCCcchhheeeeccCC---CeEEEEEecccceEEEeccCCCcEEEEE
Q psy6185 2 CSVPLKGLLSLSVGTK----------SGYRLFSLNSIDTLEQIYENSQE---DVCIVERLFSSSLVAVVSLSSPRKLTKE 68 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~----------~GfrIyn~~~~d~~~~~~~~~~g---~v~ivEmLf~snLlalVg~~~prkL~I~ 68 (79)
.++|++|+.-++.+.. ..+.+|+++.-+. +. +....+ .+.-+..==.-..||+++. +.|.+|
T Consensus 65 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~-l~~~~~~~~~~~~~~~SPdG~~la~~~~---~~i~~~ 139 (723)
T 1xfd_A 65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QS-LDPPEVSNAKLQYAGWGPKGQQLIFIFE---NNIYYC 139 (723)
T ss_dssp EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EE-CCCTTCCSCCCSBCCBCSSTTCEEEEET---TEEEEE
T ss_pred eEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-Ee-ccCCccccccccccEECCCCCEEEEEEC---CeEEEE
Confidence 5789999999998876 3466887543211 11 111111 1111111112457888764 689999
Q ss_pred eCCCCeE
Q psy6185 69 EGKNEEE 75 (79)
Q Consensus 69 d~~~~~~ 75 (79)
|...++.
T Consensus 140 ~~~~g~~ 146 (723)
T 1xfd_A 140 AHVGKQA 146 (723)
T ss_dssp SSSSSCC
T ss_pred ECCCCce
Confidence 9877654
No 147
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=73.59 E-value=19 Score=27.36 Aligned_cols=75 Identities=16% Similarity=-0.008 Sum_probs=45.1
Q ss_pred eeeccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecc-----cceEEEeccCCCcEEEEEeCCCCeE
Q psy6185 2 CSVPLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFS-----SSLVAVVSLSSPRKLTKEEGKNEEE 75 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~-----snLlalVg~~~prkL~I~d~~~~~~ 75 (79)
++.|++|+.-+.++..+| ..+|++.+ +..+...+-..| ..-..+-|+ ..=.++|+...|+.+.|+|..+.+.
T Consensus 201 ~v~~SpDGr~lyv~~~dg~V~viD~~~-~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~ 278 (567)
T 1qks_A 201 ISRLSASGRYLFVIGRDGKVNMIDLWM-KEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP 278 (567)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTS-SSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred ceEECCCCCEEEEEcCCCeEEEEECCC-CCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE
Confidence 467999999888887764 66665420 122222111222 223344455 3334456667889999999988887
Q ss_pred Eee
Q psy6185 76 EKK 78 (79)
Q Consensus 76 I~~ 78 (79)
+..
T Consensus 279 ~~~ 281 (567)
T 1qks_A 279 KKI 281 (567)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 148
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=72.40 E-value=9.1 Score=28.22 Aligned_cols=23 Identities=13% Similarity=-0.006 Sum_probs=18.0
Q ss_pred EeccCCCcEEEEEeCCCCeEEee
Q psy6185 56 VVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 56 lVg~~~prkL~I~d~~~~~~I~~ 78 (79)
++++..-+.++|||.++++.+..
T Consensus 196 LaSgS~D~TIkIWDl~TGk~l~t 218 (356)
T 2w18_A 196 LLGTTIMNNIVIWNLKTGQLLKK 218 (356)
T ss_dssp EEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEecCCCcEEEEECCCCcEEEE
Confidence 35556679999999999987754
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=72.03 E-value=18 Score=23.62 Aligned_cols=75 Identities=5% Similarity=-0.116 Sum_probs=42.0
Q ss_pred eeeccCCCCEEEEEcCC-ceEEEecCCcchhheeeec-cCC-CeEEEEEecc--cceEEEeccCCCcEEEEEeCCCCeEE
Q psy6185 2 CSVPLKGLLSLSVGTKS-GYRLFSLNSIDTLEQIYEN-SQE-DVCIVERLFS--SSLVAVVSLSSPRKLTKEEGKNEEEE 76 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-GfrIyn~~~~d~~~~~~~~-~~g-~v~ivEmLf~--snLlalVg~~~prkL~I~d~~~~~~I 76 (79)
++.|++|+.-+.++..+ ...+|+...-.. ...+.. ..+ .-....+-++ .+.+. |+....+.+.+||.++++.+
T Consensus 189 ~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 189 GLALDSEGKRLYTTNADGELITIDTADNKI-LSRKKLLDDGKEHFFINISLDTARQRAF-ITDSKAAEVLVVDTRNGNIL 266 (353)
T ss_dssp CCEEETTTTEEEEECTTSEEEEEETTTTEE-EEEEECCCSSSCCCEEEEEEETTTTEEE-EEESSSSEEEEEETTTCCEE
T ss_pred eEEECCCCCEEEEEcCCCeEEEEECCCCeE-EEEEEcCCCCCCcccceEEECCCCCEEE-EEeCCCCEEEEEECCCCcEE
Confidence 56889999988888776 466666432111 111111 111 1122223333 45553 34455689999999888776
Q ss_pred ee
Q psy6185 77 KK 78 (79)
Q Consensus 77 ~~ 78 (79)
..
T Consensus 267 ~~ 268 (353)
T 3vgz_A 267 AK 268 (353)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 150
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=71.02 E-value=20 Score=24.80 Aligned_cols=68 Identities=4% Similarity=-0.060 Sum_probs=38.1
Q ss_pred eeccCCCCEEEEEcC-C-----------ceEEEecCCcchhheeeeccCCCeEEEEEecc--cceEEEeccCCCcEEEEE
Q psy6185 3 SVPLKGLLSLSVGTK-S-----------GYRLFSLNSIDTLEQIYENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKE 68 (79)
Q Consensus 3 ~~fNQD~sc~~vgt~-~-----------GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~ 68 (79)
+.|++|+.-+.|+.. + -..+|+.+. .+....-..+. .-.+-|+ -.+++ |+.. +.|.||
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t---~~~v~~i~~~~--p~~ia~spdg~~l~-v~n~--~~v~v~ 330 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT---KQRVARIPGRD--ALSMTIDQQRNLML-TLDG--GNVNVY 330 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT---TEEEEEEECTT--CCEEEEETTTTEEE-EECS--SCEEEE
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC---CcEEEEEecCC--eeEEEECCCCCEEE-EeCC--CeEEEE
Confidence 578888887777653 2 256666432 22221112233 3333332 23443 3333 999999
Q ss_pred eCCCC--eEEee
Q psy6185 69 EGKNE--EEEKK 78 (79)
Q Consensus 69 d~~~~--~~I~~ 78 (79)
|.+++ +.+.+
T Consensus 331 D~~t~~l~~~~~ 342 (361)
T 2oiz_A 331 DISQPEPKLLRT 342 (361)
T ss_dssp ECSSSSCEEEEE
T ss_pred ECCCCcceeeEE
Confidence 99999 88765
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=68.38 E-value=22 Score=23.18 Aligned_cols=76 Identities=9% Similarity=0.010 Sum_probs=42.0
Q ss_pred eeeccCCCCEEEEEcC--CceEEEecCCcchhheeeeccC-------CCeEEEEEec--ccceEEEeccCCCcEEEEEeC
Q psy6185 2 CSVPLKGLLSLSVGTK--SGYRLFSLNSIDTLEQIYENSQ-------EDVCIVERLF--SSSLVAVVSLSSPRKLTKEEG 70 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~--~GfrIyn~~~~d~~~~~~~~~~-------g~v~ivEmLf--~snLlalVg~~~prkL~I~d~ 70 (79)
.+.|+.|+.-+.++.. .-..+|+.+.-+. ...+.... .+...-.+-+ ..+.+++.+....+++.+||.
T Consensus 93 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 93 GATINNTTQTLWFGNTVNSAVTAIDAKTGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp SEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET
T ss_pred eEEECCCCCEEEEEecCCCEEEEEeCCCCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC
Confidence 4678899986666555 3566666432221 11122111 1122334444 335555554355788999999
Q ss_pred CCCeEEee
Q psy6185 71 KNEEEEKK 78 (79)
Q Consensus 71 ~~~~~I~~ 78 (79)
++++.+..
T Consensus 172 ~~~~~~~~ 179 (353)
T 3vgz_A 172 GNIKLKTA 179 (353)
T ss_dssp TTTEEEEE
T ss_pred CCCceEEE
Confidence 98887654
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=66.96 E-value=22 Score=22.80 Aligned_cols=70 Identities=9% Similarity=0.064 Sum_probs=39.5
Q ss_pred eeeccCCCCEEEEEc-------------CCceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEE
Q psy6185 2 CSVPLKGLLSLSVGT-------------KSGYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKE 68 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt-------------~~GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~ 68 (79)
++.|++|+.-++++. +...++|+.+.-.. ...+........+ ..--..+.+++.+ +.+.+|
T Consensus 86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~-~~s~dg~~l~~~~----~~i~~~ 159 (337)
T 1pby_B 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEAPRQITML-AWARDGSKLYGLG----RDLHVM 159 (337)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEECCSSCCCE-EECTTSSCEEEES----SSEEEE
T ss_pred ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeCCCCccee-EECCCCCEEEEeC----CeEEEE
Confidence 478999999888884 56788887543111 1122211111112 1222334454442 679999
Q ss_pred eCCCCeEEe
Q psy6185 69 EGKNEEEEK 77 (79)
Q Consensus 69 d~~~~~~I~ 77 (79)
|..+++.+.
T Consensus 160 d~~~~~~~~ 168 (337)
T 1pby_B 160 DPEAGTLVE 168 (337)
T ss_dssp ETTTTEEEE
T ss_pred ECCCCcEee
Confidence 998887664
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=66.24 E-value=25 Score=23.18 Aligned_cols=25 Identities=0% Similarity=-0.100 Sum_probs=19.5
Q ss_pred eeeccCCCCEEEEEc-CC-ceEEEecC
Q psy6185 2 CSVPLKGLLSLSVGT-KS-GYRLFSLN 26 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt-~~-GfrIyn~~ 26 (79)
.+.|++|+..+.++. .+ ..++|+++
T Consensus 90 ~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 90 YVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 578999999887776 44 48899865
No 154
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=63.91 E-value=29 Score=28.97 Aligned_cols=64 Identities=25% Similarity=0.288 Sum_probs=39.4
Q ss_pred eccCC-CCEEEEEc----------CCc-eEEEecCCcchhheeeecc-CCCe-EEEEEecccceEEEeccCCCcEEEEEe
Q psy6185 4 VPLKG-LLSLSVGT----------KSG-YRLFSLNSIDTLEQIYENS-QEDV-CIVERLFSSSLVAVVSLSSPRKLTKEE 69 (79)
Q Consensus 4 ~fNQD-~sc~~vgt----------~~G-frIyn~~~~d~~~~~~~~~-~g~v-~ivEmLf~snLlalVg~~~prkL~I~d 69 (79)
.|..+ ...++||| ..| +.||.+.. .+++..++.+ .|++ ++.++ .--|+|=+| ++|+|||
T Consensus 838 ~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~-~kL~lv~~~~v~g~v~al~~~--~g~Lla~ig----~~l~vy~ 910 (1158)
T 3ei3_A 838 KLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD-GKLQTVAEKEVKGAVYSMVEF--NGKLLASIN----STVRLYE 910 (1158)
T ss_dssp CCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET-TEEEEEEEEEESSCEEEEEEE--TTEEEEEET----TEEEEEE
T ss_pred EEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC-CEEEEEEEEEcCCcCEEEeee--CCEEEEEcC----CEEEEEE
Confidence 45443 68999999 234 55665431 2445554443 4555 44444 346888888 7999999
Q ss_pred CCCCe
Q psy6185 70 GKNEE 74 (79)
Q Consensus 70 ~~~~~ 74 (79)
-.+++
T Consensus 911 l~~~~ 915 (1158)
T 3ei3_A 911 WTTEK 915 (1158)
T ss_dssp ECTTS
T ss_pred CCCCc
Confidence 77654
No 155
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=62.30 E-value=44 Score=24.57 Aligned_cols=25 Identities=4% Similarity=-0.367 Sum_probs=20.2
Q ss_pred eeeccCCCCEEEEEcCCceEEEecC
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLN 26 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~ 26 (79)
.++|++|+.-++.+.....++++.+
T Consensus 118 ~~~~SPdG~~la~~~~~~i~~~~~~ 142 (723)
T 1xfd_A 118 YAGWGPKGQQLIFIFENNIYYCAHV 142 (723)
T ss_dssp BCCBCSSTTCEEEEETTEEEEESSS
T ss_pred ccEECCCCCEEEEEECCeEEEEECC
Confidence 4689999999999988777777643
No 156
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=61.83 E-value=45 Score=24.54 Aligned_cols=70 Identities=10% Similarity=0.004 Sum_probs=40.6
Q ss_pred eeccCCCCEEEEE-cCCc---eEEEecCCc-chhheeeeccCCCeEEEEEecccceEEEecc--CCCcEEEEEeCCCCe
Q psy6185 3 SVPLKGLLSLSVG-TKSG---YRLFSLNSI-DTLEQIYENSQEDVCIVERLFSSSLVAVVSL--SSPRKLTKEEGKNEE 74 (79)
Q Consensus 3 ~~fNQD~sc~~vg-t~~G---frIyn~~~~-d~~~~~~~~~~g~v~ivEmLf~snLlalVg~--~~prkL~I~d~~~~~ 74 (79)
+.|++|+.-++++ ..+| .+||..+.- ...+ ... ..+++.-+..=-..+.+|+... ..|..+.+||.++++
T Consensus 361 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 361 AGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-DLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred eEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-ecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 5799999877554 4444 688865431 1111 111 2344444433333556776643 567899999987765
No 157
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=61.75 E-value=34 Score=25.17 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=38.7
Q ss_pred eeeccCCCCEEEEEcCCceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCC
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKN 72 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~ 72 (79)
+++|++| .-++++.+..+++|+++.- ....... ..+.+.-+..--..+.||.+. .+.|.+||...
T Consensus 86 ~~~~spd-~~~~~~~~~~i~~~d~~~~-~~~~l~~-~~~~~~~~~~SpdG~~la~~~---~~~i~v~~~~~ 150 (706)
T 2z3z_A 86 RTLDAGR-GLVVLFTQGGLVGFDMLAR-KVTYLFD-TNEETASLDFSPVGDRVAYVR---NHNLYIARGGK 150 (706)
T ss_dssp EEEETTT-TEEEEEETTEEEEEETTTT-EEEEEEC-CTTCCTTCEECTTSSEEEEEE---TTEEEEEECBC
T ss_pred eEEECCC-CeEEEEECCEEEEEECCCC-ceEEccC-CcccccCCcCCCCCCEEEEEE---CCeEEEEecCc
Confidence 5789999 8888888888999986431 1111111 122222222222345677753 37899999876
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=61.02 E-value=23 Score=26.29 Aligned_cols=67 Identities=7% Similarity=0.017 Sum_probs=39.1
Q ss_pred eeeccCCCCEEEEEcC----------CceEEEecCCcchh--heeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEe
Q psy6185 2 CSVPLKGLLSLSVGTK----------SGYRLFSLNSIDTL--EQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEE 69 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~----------~GfrIyn~~~~d~~--~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d 69 (79)
+++|++|+.-++.+.. ..+++++++.-+.. .. . .+++.-+..==....||.+. .+.|.+||
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l---~~~~~~~~~SPDG~~la~~~---~~~i~~~~ 136 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-L---PRPIQYLCWSPVGSKLAYVY---QNNIYLKQ 136 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-C---CSSBCCEEECSSTTCEEEEE---TTEEEEES
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-c---CcccccceECCCCCEEEEEE---CCeEEEEe
Confidence 5789999999988876 46778875431110 11 1 12222222222234677764 36899999
Q ss_pred CCCCeE
Q psy6185 70 GKNEEE 75 (79)
Q Consensus 70 ~~~~~~ 75 (79)
..+++.
T Consensus 137 ~~~g~~ 142 (719)
T 1z68_A 137 RPGDPP 142 (719)
T ss_dssp STTSCC
T ss_pred CCCCCc
Confidence 877654
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=59.39 E-value=36 Score=22.62 Aligned_cols=70 Identities=20% Similarity=0.111 Sum_probs=36.5
Q ss_pred eeccCCCCEEEEEcC-Cc---eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeE
Q psy6185 3 SVPLKGLLSLSVGTK-SG---YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEE 75 (79)
Q Consensus 3 ~~fNQD~sc~~vgt~-~G---frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~ 75 (79)
.+|++|+.-++.+.. +| ..+++.+.-++ ........+.+.-+..--....||+++. .+.|.+||..++++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~spdg~~l~~~~~--~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-TQLTEGRGDNTFGGFLSPDDDALFYVKD--GRNLMRVDLATLEE 114 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-EECCCSSCBCSSSCEECTTSSEEEEEET--TTEEEEEETTTCCE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-EEeeeCCCCCccceEEcCCCCEEEEEeC--CCeEEEEECCCCcc
Confidence 579999999888887 56 55555432111 1121111111100111112346766653 25788899777654
No 160
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=55.80 E-value=50 Score=23.19 Aligned_cols=72 Identities=8% Similarity=-0.116 Sum_probs=39.8
Q ss_pred eeccCCCCEEEEEcCC-----------ceEEEecCCcchhheeeeccCCCeEEEEEecc--cceEEEeccCCCcEEEEEe
Q psy6185 3 SVPLKGLLSLSVGTKS-----------GYRLFSLNSIDTLEQIYENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKEE 69 (79)
Q Consensus 3 ~~fNQD~sc~~vgt~~-----------GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~d 69 (79)
+.|++|+.-+-|+... -..|++.+.-+..+ .. ..++ .-.-|.++ -..+++|+....+.|.|||
T Consensus 272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~-~i--~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS-QI--SLGH-DVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE-EE--ECCC-CcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 5677787777776542 25555533211111 11 1221 12222333 2434456655568999999
Q ss_pred CCCCeEEee
Q psy6185 70 GKNEEEEKK 78 (79)
Q Consensus 70 ~~~~~~I~~ 78 (79)
.++++++..
T Consensus 348 ~~t~~vv~~ 356 (373)
T 2mad_H 348 AGAGDQDQS 356 (373)
T ss_pred CCCCCEEee
Confidence 999998876
No 161
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=54.73 E-value=60 Score=23.78 Aligned_cols=73 Identities=15% Similarity=-0.066 Sum_probs=35.9
Q ss_pred eeccC---CCCEEEEEcCC-ceEEEecCCcchhheeeecc---CCCeEEEEEecccceEE----------EeccCCCcEE
Q psy6185 3 SVPLK---GLLSLSVGTKS-GYRLFSLNSIDTLEQIYENS---QEDVCIVERLFSSSLVA----------VVSLSSPRKL 65 (79)
Q Consensus 3 ~~fNQ---D~sc~~vgt~~-GfrIyn~~~~d~~~~~~~~~---~g~v~ivEmLf~snLla----------lVg~~~prkL 65 (79)
++|+. |+..++.|..+ =.|||+.+.- .+...+... ...+..+----...+++ ++++..-+.+
T Consensus 184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI 262 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL 262 (356)
T ss_dssp EEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred EEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence 45555 67778876655 6899986531 212223211 11221111111222222 2344556899
Q ss_pred EEEeCCCCeEE
Q psy6185 66 TKEEGKNEEEE 76 (79)
Q Consensus 66 ~I~d~~~~~~I 76 (79)
++||.++++.+
T Consensus 263 klWd~~tgk~l 273 (356)
T 2w18_A 263 IVINPKTTLSV 273 (356)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCEEE
Confidence 99999988765
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=53.81 E-value=42 Score=21.65 Aligned_cols=74 Identities=7% Similarity=-0.117 Sum_probs=39.1
Q ss_pred eeeccCCCCEEEEEcCC-ceEEEecCCcchhheeeeccC-CCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEe
Q psy6185 2 CSVPLKGLLSLSVGTKS-GYRLFSLNSIDTLEQIYENSQ-EDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-GfrIyn~~~~d~~~~~~~~~~-g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~ 77 (79)
.+.|..+..-++++..+ ..++++.+.- .....+.... .+..-+..--..+.+.+.+ .....|.+||.++++.+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~-~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD-TVYKSCVMPDKFGPGTAMMAPDNRTAYVLN-NHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT-EEEEEEECSSCCSSCEEEECTTSSEEEEEE-TTTTEEEEEETTTTEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC-cEEEEEecCCCCCCceeEECCCCCEEEEEe-CCCCcEEEEeCCCCcEEE
Confidence 45677777777776554 6778875331 1112222111 1222222222233444443 445789999998877654
No 163
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=52.49 E-value=14 Score=17.52 Aligned_cols=16 Identities=6% Similarity=-0.234 Sum_probs=12.7
Q ss_pred CCCcEEEEEeCCCCeE
Q psy6185 60 SSPRKLTKEEGKNEEE 75 (79)
Q Consensus 60 ~~prkL~I~d~~~~~~ 75 (79)
+.|+++.||.+..+..
T Consensus 2 f~~~RVrvfvd~~g~V 17 (26)
T 1hym_B 2 FRCNRVRIWVNKRGLV 17 (26)
T ss_dssp CCTTEEEEEEETTTEE
T ss_pred CCCCEEEEEECCCCcE
Confidence 5689999999877653
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=49.41 E-value=68 Score=23.67 Aligned_cols=25 Identities=8% Similarity=-0.305 Sum_probs=20.9
Q ss_pred eeeccCCCCEEEEEcCCceEEEecC
Q psy6185 2 CSVPLKGLLSLSVGTKSGYRLFSLN 26 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~GfrIyn~~ 26 (79)
.++|++|+.-++.+.+.-.++++..
T Consensus 114 ~~~~SPDG~~la~~~~~~i~~~~~~ 138 (719)
T 1z68_A 114 YLCWSPVGSKLAYVYQNNIYLKQRP 138 (719)
T ss_dssp CEEECSSTTCEEEEETTEEEEESST
T ss_pred cceECCCCCEEEEEECCeEEEEeCC
Confidence 4789999999999988878888653
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=47.26 E-value=66 Score=22.07 Aligned_cols=77 Identities=6% Similarity=-0.137 Sum_probs=40.7
Q ss_pred eeeccCCCCEEEEEcC-----------CceEEEecCCcchhheeeec---cCCCeEEEEEecc-cceEEEeccCC-CcEE
Q psy6185 2 CSVPLKGLLSLSVGTK-----------SGYRLFSLNSIDTLEQIYEN---SQEDVCIVERLFS-SSLVAVVSLSS-PRKL 65 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~-----------~GfrIyn~~~~d~~~~~~~~---~~g~v~ivEmLf~-snLlalVg~~~-prkL 65 (79)
.+.|++|+.-+.++.+ .-..+|+....++....--. ..++-.-..+-++ ..=.++|+... .+.+
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 3679999999988863 23788875432221111000 0001111112222 12123344443 5899
Q ss_pred EEEeCCCCeEEee
Q psy6185 66 TKEEGKNEEEEKK 78 (79)
Q Consensus 66 ~I~d~~~~~~I~~ 78 (79)
.+||.++++.+.+
T Consensus 134 ~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 134 GIVDVAKGDYVED 146 (361)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEECCCCcEEEE
Confidence 9999999988765
No 166
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=44.64 E-value=63 Score=21.06 Aligned_cols=17 Identities=0% Similarity=-0.257 Sum_probs=13.2
Q ss_pred eeeccCCCCEEEEEcCC
Q psy6185 2 CSVPLKGLLSLSVGTKS 18 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~ 18 (79)
...|++|+.-++.+...
T Consensus 63 ~~~~SpDg~~la~~~~~ 79 (347)
T 2gop_A 63 MPRISPDGKKIAFMRAN 79 (347)
T ss_dssp EEEECTTSSEEEEEEEE
T ss_pred CeEECCCCCEEEEEEec
Confidence 46899999988877654
No 167
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=43.58 E-value=62 Score=20.67 Aligned_cols=69 Identities=12% Similarity=-0.071 Sum_probs=37.5
Q ss_pred eeeccCCCCEEEEEc--CCceEEEecCCcchhheee----eccC-CCeEEEEEecccceEEEeccCCCcEEEEEeCC
Q psy6185 2 CSVPLKGLLSLSVGT--KSGYRLFSLNSIDTLEQIY----ENSQ-EDVCIVERLFSSSLVAVVSLSSPRKLTKEEGK 71 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt--~~GfrIyn~~~~d~~~~~~----~~~~-g~v~ivEmLf~snLlalVg~~~prkL~I~d~~ 71 (79)
++.|++|+.-+.++. +...++|+++.-..+.... .... ....-+..--..+.+++++ ...+.+.+||..
T Consensus 133 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~-~~~~~i~~~~~~ 208 (343)
T 1ri6_A 133 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN-ELNSSVDVWELK 208 (343)
T ss_dssp CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE-TTTTEEEEEESS
T ss_pred EEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEe-CCCCEEEEEEec
Confidence 578999998776664 5678888865312222111 1111 2222222222334555554 445789999974
No 168
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=41.62 E-value=74 Score=21.03 Aligned_cols=72 Identities=8% Similarity=-0.020 Sum_probs=38.6
Q ss_pred eeeccCCCCEEEEEc--CCceEEEecCCcch------hhee----eeccCCCeEEEEEeccc--ceEEEeccCCCcEEEE
Q psy6185 2 CSVPLKGLLSLSVGT--KSGYRLFSLNSIDT------LEQI----YENSQEDVCIVERLFSS--SLVAVVSLSSPRKLTK 67 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt--~~GfrIyn~~~~d~------~~~~----~~~~~g~v~ivEmLf~s--nLlalVg~~~prkL~I 67 (79)
++.|++|+..+.++. ....++|++++-.. +... ......+-+.-.+-|+- .++++++ ...+.+.+
T Consensus 159 ~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-~~~~~v~v 237 (361)
T 3scy_A 159 CVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLIN-EIGGTVIA 237 (361)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-TTTCEEEE
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEc-CCCCeEEE
Confidence 478999999665554 34678897654211 2111 11111122223344543 3555544 44578999
Q ss_pred EeCCCCe
Q psy6185 68 EEGKNEE 74 (79)
Q Consensus 68 ~d~~~~~ 74 (79)
||...++
T Consensus 238 ~~~~~g~ 244 (361)
T 3scy_A 238 FRYADGM 244 (361)
T ss_dssp EEEETTE
T ss_pred EEecCCc
Confidence 9976553
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=34.76 E-value=1e+02 Score=20.52 Aligned_cols=18 Identities=11% Similarity=-0.149 Sum_probs=13.2
Q ss_pred CCCcEEEEEeCCCCeEEe
Q psy6185 60 SSPRKLTKEEGKNEEEEK 77 (79)
Q Consensus 60 ~~prkL~I~d~~~~~~I~ 77 (79)
..+.++.+||..+++.+.
T Consensus 265 ~~~~~v~~~~~~~g~~~~ 282 (329)
T 3fvz_A 265 QEPVQGFVMNFSSGEIID 282 (329)
T ss_dssp SCCCCEEEEETTTCCEEE
T ss_pred CCCcEEEEEEcCCCeEEE
Confidence 556788999987776654
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=34.61 E-value=1.5e+02 Score=22.37 Aligned_cols=68 Identities=13% Similarity=-0.027 Sum_probs=39.3
Q ss_pred eeccCCCCEEEEEcCC----------ceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCC
Q psy6185 3 SVPLKGLLSLSVGTKS----------GYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKN 72 (79)
Q Consensus 3 ~~fNQD~sc~~vgt~~----------GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~ 72 (79)
.+|++|+.-++.++.. -+.+|+++.- .... .....+.+..+.-==..+.||++.. +.|.+||...
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~-~~~~-l~~~~~~~~~~~~SPdG~~la~~~~---~~i~~~~~~~ 141 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-QLIT-EERIPNNTQWVTWSPVGHKLAYVWN---NDIYVKIEPN 141 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-EECC-SSCCCTTEEEEEECSSTTCEEEEET---TEEEEESSTT
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC-cEEE-cccCCCcceeeEECCCCCEEEEEEC---CeEEEEECCC
Confidence 5679999998888873 3458875431 1111 1112233333332223467788742 6789999876
Q ss_pred CeE
Q psy6185 73 EEE 75 (79)
Q Consensus 73 ~~~ 75 (79)
+.+
T Consensus 142 ~~~ 144 (740)
T 4a5s_A 142 LPS 144 (740)
T ss_dssp SCC
T ss_pred Cce
Confidence 654
No 171
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=34.18 E-value=78 Score=20.81 Aligned_cols=46 Identities=15% Similarity=0.006 Sum_probs=29.2
Q ss_pred eeccCCCCEEEEEcCCceEEEecCCcch-hheeeeccCCCeEEEEEec
Q psy6185 3 SVPLKGLLSLSVGTKSGYRLFSLNSIDT-LEQIYENSQEDVCIVERLF 49 (79)
Q Consensus 3 ~~fNQD~sc~~vgt~~GfrIyn~~~~d~-~~~~~~~~~g~v~ivEmLf 49 (79)
+.|.+++.-.++|.++| +..+++=.|. .....+....+|+|-|+=+
T Consensus 115 ~eF~p~~~w~a~~~esG-~f~dvDLse~eW~DYDEk~~~~VsI~e~~~ 161 (164)
T 1zso_A 115 IDFFPSNNFIVEDTKGK-LYYDVNLSDQNWCDYNEEHEMCVGIYNLEY 161 (164)
T ss_dssp EEECCCSCEEEEETTSC-EEEEECCTTSCEEEEETTTTEEEEEEEEEE
T ss_pred EEEecCCcEEEEECCCC-cEEeeecCCCceeccccCCCCeEEEEEEEE
Confidence 46899999999999999 5546542221 1112223456788888743
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=33.87 E-value=1e+02 Score=20.25 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=36.6
Q ss_pred eeccC-CCCEEEEEcCCc-----eEEEecCCc-chhheeeeccCCCeEEEEEecc--cceEEEecc---CCCcEEEEEeC
Q psy6185 3 SVPLK-GLLSLSVGTKSG-----YRLFSLNSI-DTLEQIYENSQEDVCIVERLFS--SSLVAVVSL---SSPRKLTKEEG 70 (79)
Q Consensus 3 ~~fNQ-D~sc~~vgt~~G-----frIyn~~~~-d~~~~~~~~~~g~v~ivEmLf~--snLlalVg~---~~prkL~I~d~ 70 (79)
+.|++ |+.-++...+.+ .+||-.+.- ........ ..++..+-..-|+ ...||+++. ...+.|.+||.
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 193 PIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP 271 (396)
T ss_dssp EEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred ceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence 56778 777676665543 345533211 11111111 1123344444554 456777753 22245999998
Q ss_pred CCCeE
Q psy6185 71 KNEEE 75 (79)
Q Consensus 71 ~~~~~ 75 (79)
.+++.
T Consensus 272 ~~g~~ 276 (396)
T 3c5m_A 272 ETLEN 276 (396)
T ss_dssp TTCCE
T ss_pred CCCCe
Confidence 76643
No 173
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=33.73 E-value=58 Score=18.47 Aligned_cols=29 Identities=7% Similarity=0.296 Sum_probs=19.3
Q ss_pred ceEEEecCCcchhheeeeccCCCeEEEEE
Q psy6185 19 GYRLFSLNSIDTLEQIYENSQEDVCIVER 47 (79)
Q Consensus 19 GfrIyn~~~~d~~~~~~~~~~g~v~ivEm 47 (79)
-|-+|.=...+...-.|.+.+|++|++|-
T Consensus 29 ~F~vF~n~etg~~nVVYRR~dG~yGlI~p 57 (66)
T 3lyv_A 29 DFFIYTDSEDGATNILYRREDGNLGLIEA 57 (66)
T ss_dssp SEEEEEETTTCSEEEEEECTTSSEEEEEE
T ss_pred cEEEEEeCCCCCEEEEEEECCCCEEEEEe
Confidence 45566421234445688899999999884
No 174
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=33.05 E-value=25 Score=21.49 Aligned_cols=17 Identities=24% Similarity=0.130 Sum_probs=14.1
Q ss_pred cEEEEEeCCCCeEEeeC
Q psy6185 63 RKLTKEEGKNEEEEKKI 79 (79)
Q Consensus 63 rkL~I~d~~~~~~I~~~ 79 (79)
.||.+||-|+-..|..|
T Consensus 84 ~klcvwnnktpnsiaai 100 (104)
T 3chb_D 84 EKLCVWNNKTPRAIAAI 100 (104)
T ss_dssp EEEEEETTSSSEEEEEE
T ss_pred hheeeecCCCCcceeee
Confidence 58999999998888654
No 175
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=32.11 E-value=30 Score=21.61 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=14.4
Q ss_pred EEEEEeCCCCeEEeeC
Q psy6185 64 KLTKEEGKNEEEEKKI 79 (79)
Q Consensus 64 kL~I~d~~~~~~I~~~ 79 (79)
.++|.|.+++..|.||
T Consensus 70 vVkVvD~~TgEVIRqI 85 (117)
T 2hc5_A 70 YVKVIEDSTNEVIREI 85 (117)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCcEEEeC
Confidence 6789999999999986
No 176
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=31.59 E-value=62 Score=18.32 Aligned_cols=29 Identities=10% Similarity=0.358 Sum_probs=19.0
Q ss_pred ceEEEecCCcchhheeeeccCCCeEEEEE
Q psy6185 19 GYRLFSLNSIDTLEQIYENSQEDVCIVER 47 (79)
Q Consensus 19 GfrIyn~~~~d~~~~~~~~~~g~v~ivEm 47 (79)
-|-+|.=...+...-.|.+.+|++|++|-
T Consensus 28 ~F~vF~n~etg~~nVVYRR~dG~yGlI~p 56 (65)
T 3ka5_A 28 NFFVFQNGDSNEVNVVYKRKDGNYGLIEP 56 (65)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCEEEEEC
T ss_pred cEEEEEeCCCCCEEEEEEeCCCCEEEEEe
Confidence 45666421234445678889999999873
No 177
>3pp4_P B-lymphocyte antigen CD20; antibody FAB fragment IG-domain, cyclic peptide, antib antigen, immune system; 1.60A {Homo sapiens} PDB: 3bky_P 2osl_P
Probab=30.37 E-value=12 Score=17.79 Aligned_cols=11 Identities=9% Similarity=0.353 Sum_probs=7.9
Q ss_pred EEecCCcchhh
Q psy6185 22 LFSLNSIDTLE 32 (79)
Q Consensus 22 Iyn~~~~d~~~ 32 (79)
||||+|..|-+
T Consensus 2 IynCE~a~pse 12 (25)
T 3pp4_P 2 IYNCEPANPSE 12 (26)
T ss_dssp CCCCSCSSGGG
T ss_pred ccccccCCccc
Confidence 78888876643
No 178
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=29.81 E-value=91 Score=25.23 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=25.9
Q ss_pred CeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 41 DVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 41 ~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
+..+.-|.+..+++..|.. -++|+|||-++++.+..
T Consensus 221 ~~~Is~~~~~~~fLftL~~--Dh~LRiWsL~t~~lv~t 256 (729)
T 3f7f_A 221 DSVISCKLFHERYLIVLTQ--NCHLKIWDLTSFTLIQD 256 (729)
T ss_dssp CCEEEEEEETTTEEEEEET--TCEEEEEETTTTEEEEE
T ss_pred CceEEEeccCCcEEEEEEc--CCeEEEEEcCCCceEEe
Confidence 3345555666777777753 37999999999987654
No 179
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=28.86 E-value=61 Score=17.75 Aligned_cols=28 Identities=7% Similarity=0.296 Sum_probs=18.2
Q ss_pred ceEEEecCCcchhheeeeccCCCeEEEE
Q psy6185 19 GYRLFSLNSIDTLEQIYENSQEDVCIVE 46 (79)
Q Consensus 19 GfrIyn~~~~d~~~~~~~~~~g~v~ivE 46 (79)
-|-+|.=...+...-.|.+.+|+++++|
T Consensus 28 ~F~vF~n~~t~~~nVvYrR~dG~yGlI~ 55 (57)
T 3k2t_A 28 SFYVYTDAETNGTNIVYSRKDGKYGLIE 55 (57)
T ss_dssp SEEEEEBSSSCCEEEEEECTTSCEEEEC
T ss_pred cEEEEEcCCCCCEEEEEEeCCCCEEEEe
Confidence 4556641123444567888899999886
No 180
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=27.96 E-value=2.2e+02 Score=22.42 Aligned_cols=70 Identities=9% Similarity=0.104 Sum_probs=38.3
Q ss_pred eeeccCCCCEEEEEcCC-ceE-EEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEE
Q psy6185 2 CSVPLKGLLSLSVGTKS-GYR-LFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEE 76 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-Gfr-Iyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I 76 (79)
.+.|. |+.-++.+.++ ... +|+.+. ...... ....+.+..+..--....||..+ ..+.|.+||.++++..
T Consensus 342 ~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~~~~l-~~~~~~~~~~~~SpDG~~la~~~--~~~~v~~~d~~tg~~~ 413 (1045)
T 1k32_A 342 RRGGD-TKVAFIHGTREGDFLGIYDYRT-GKAEKF-EENLGNVFAMGVDRNGKFAVVAN--DRFEIMTVDLETGKPT 413 (1045)
T ss_dssp EECSS-SEEEEEEEETTEEEEEEEETTT-CCEEEC-CCCCCSEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEE
T ss_pred eeeEc-CCCeEEEEECCCceEEEEECCC-CCceEe-cCCccceeeeEECCCCCEEEEEC--CCCeEEEEECCCCceE
Confidence 46788 88888777664 344 455432 111111 12223444433333456677654 3468999998877653
No 181
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=27.82 E-value=35 Score=21.14 Aligned_cols=17 Identities=24% Similarity=0.130 Sum_probs=13.8
Q ss_pred cEEEEEeCCCCeEEeeC
Q psy6185 63 RKLTKEEGKNEEEEKKI 79 (79)
Q Consensus 63 rkL~I~d~~~~~~I~~~ 79 (79)
.||.+||-|+-..|..|
T Consensus 83 ~klcvwnnktpnsiaai 99 (113)
T 1ltr_D 83 DKLCVWNNKTPNSIAAI 99 (113)
T ss_dssp EEEEEETTSSSEEEEEE
T ss_pred hheeeecCCCCchhhHh
Confidence 48999999998877654
No 182
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=27.17 E-value=1.7e+02 Score=20.90 Aligned_cols=70 Identities=13% Similarity=0.030 Sum_probs=36.1
Q ss_pred eeeccCCCCEEEEEcCC--c-eEEEecCC-cchhheeeeccCCCeEEEEEecc--cceEEEecc-CCCcEEEEEeCCCCe
Q psy6185 2 CSVPLKGLLSLSVGTKS--G-YRLFSLNS-IDTLEQIYENSQEDVCIVERLFS--SSLVAVVSL-SSPRKLTKEEGKNEE 74 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~--G-frIyn~~~-~d~~~~~~~~~~g~v~ivEmLf~--snLlalVg~-~~prkL~I~d~~~~~ 74 (79)
.+.|++|+.-++.+..+ + ..||-.+. ....+ .+....+.+ -..-|+ -..|| .+. .....|.+||..+++
T Consensus 154 ~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~--~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 154 GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSF--SSASISPGMKVTA-GLETAREARLVTVDPRDGS 229 (582)
T ss_dssp EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEE--EEEEECTTSCEEE-EEECSSCEEEEEECTTTCC
T ss_pred eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCcc--ccceECCCCCEEE-EccCCCeeEEEEEcCCCCc
Confidence 46789999998865543 1 34553321 11212 122222222 333333 34566 332 223589999987765
Q ss_pred E
Q psy6185 75 E 75 (79)
Q Consensus 75 ~ 75 (79)
.
T Consensus 230 ~ 230 (582)
T 3o4h_A 230 V 230 (582)
T ss_dssp E
T ss_pred E
Confidence 4
No 183
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=27.05 E-value=1.7e+02 Score=21.40 Aligned_cols=73 Identities=7% Similarity=-0.026 Sum_probs=39.7
Q ss_pred eeccCCCCEEEEEcCC-----------ceEEEecCCcchhheeeeccCCCeEEEEEecc--cceEEEeccCCCcEEEEEe
Q psy6185 3 SVPLKGLLSLSVGTKS-----------GYRLFSLNSIDTLEQIYENSQEDVCIVERLFS--SSLVAVVSLSSPRKLTKEE 69 (79)
Q Consensus 3 ~~fNQD~sc~~vgt~~-----------GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~--snLlalVg~~~prkL~I~d 69 (79)
+.|++|+.-+-|+..+ -..|++.......+. . ..|. .--.+.|+ -...++|.....+.|.|+|
T Consensus 324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~-I--~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINK-I--ELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE-E--EEEE-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEE-E--ECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence 4677787777776531 266666433211111 1 1111 12222333 2324445555679999999
Q ss_pred CCCCeEEeeC
Q psy6185 70 GKNEEEEKKI 79 (79)
Q Consensus 70 ~~~~~~I~~~ 79 (79)
.++.+++..|
T Consensus 400 ~~t~kvv~tI 409 (426)
T 3c75_H 400 AATGEELRSV 409 (426)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCCEEEEe
Confidence 9999998764
No 184
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=26.60 E-value=37 Score=21.45 Aligned_cols=17 Identities=24% Similarity=0.130 Sum_probs=13.8
Q ss_pred cEEEEEeCCCCeEEeeC
Q psy6185 63 RKLTKEEGKNEEEEKKI 79 (79)
Q Consensus 63 rkL~I~d~~~~~~I~~~ 79 (79)
.||.+||-|+-..|.-|
T Consensus 83 ~klcvwnnktpnsiaai 99 (129)
T 1b44_D 83 DKLCVWNNKTPNSIAAI 99 (129)
T ss_dssp EEEEEETTSSSEEEEEE
T ss_pred hheeeecCCCCchhhhh
Confidence 48999999998877654
No 185
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=26.56 E-value=1.8e+02 Score=20.83 Aligned_cols=61 Identities=18% Similarity=0.102 Sum_probs=35.1
Q ss_pred ccCCCCEEEEEcCCc-eEEEecCCcchhheeeeccCCCeEEEEEecccceEEEecc-CCCcEEEEEeCCC
Q psy6185 5 PLKGLLSLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSL-SSPRKLTKEEGKN 72 (79)
Q Consensus 5 fNQD~sc~~vgt~~G-frIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~-~~prkL~I~d~~~ 72 (79)
|.+|+.-++.+..+| .+||.. ........+.+.-+..- ...+++..+. ..|..+.+||...
T Consensus 253 ~spdg~~~~~~~~~g~~~l~~~------g~~~~~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 253 YLPDGRLAVVARREGRSAVFID------GERVEAPQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp ECTTSCEEEEEEETTEEEEEET------TEEECCCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EcCCCcEEEEEEcCCcEEEEEE------CCeeccCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 899997777776665 678874 12111222444333333 4445544443 5667888888654
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=25.08 E-value=1.5e+02 Score=19.53 Aligned_cols=72 Identities=7% Similarity=-0.105 Sum_probs=40.4
Q ss_pred eeccCCCCEEEEEcCCceEEEecCCcchhheeeeccCCCeEEEEEecccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 3 SVPLKGLLSLSVGTKSGYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 3 ~~fNQD~sc~~vgt~~GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
+++..|+.-+++...+| +|+-.++-......+.....+.+ +..+-.-++++. + ....+|..+|.++++.+-+
T Consensus 130 v~~~~~G~~lv~~~~~~-~v~~~d~~G~~~w~~~~~~~~~~-~~~~~~g~~~v~-~-~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 130 INKNKKGNYLVPLFATS-EVREIAPNGQLLNSVKLSGTPFS-SAFLDNGDCLVA-C-GDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp CEECTTSCEEEEETTTT-EEEEECTTSCEEEEEECSSCCCE-EEECTTSCEEEE-C-BTTSEEEEECTTTCCEEEE
T ss_pred ceECCCCCEEEEecCCC-EEEEECCCCCEEEEEECCCCccc-eeEcCCCCEEEE-e-CCCCeEEEEeCcCCcEEEE
Confidence 45667788777776655 44433332222223333333333 455655666633 3 4446899999888887654
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=21.74 E-value=2.5e+02 Score=20.88 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=17.6
Q ss_pred eeeccCCCCEEEEEcCC-c-----eEEEecC
Q psy6185 2 CSVPLKGLLSLSVGTKS-G-----YRLFSLN 26 (79)
Q Consensus 2 ~~~fNQD~sc~~vgt~~-G-----frIyn~~ 26 (79)
..+|++|+.-++.+... | .+|++++
T Consensus 129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 36799999999887764 3 4555543
No 188
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=21.10 E-value=60 Score=26.61 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=19.0
Q ss_pred cccceEEEeccCCCcEEEEEeCCCCeEEee
Q psy6185 49 FSSSLVAVVSLSSPRKLTKEEGKNEEEEKK 78 (79)
Q Consensus 49 f~snLlalVg~~~prkL~I~d~~~~~~I~~ 78 (79)
....++..|. --++|+|||.++++.+..
T Consensus 247 ~~~~~lftL~--~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 247 STYNVLVMLS--LDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp TTTTEEEEEB--TTCEEEEEETTTTEEEEE
T ss_pred CCccEEEEEe--CCCEEEEEECCCCCeEEe
Confidence 3344444443 337999999999988753
No 189
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=20.33 E-value=2.4e+02 Score=20.03 Aligned_cols=73 Identities=7% Similarity=-0.044 Sum_probs=41.5
Q ss_pred eeccCCCCEEEEEcC----------CceEEEecCCcchhheeeeccCCCeEEEEEeccc--ceEEEeccCCCcEEEEEeC
Q psy6185 3 SVPLKGLLSLSVGTK----------SGYRLFSLNSIDTLEQIYENSQEDVCIVERLFSS--SLVAVVSLSSPRKLTKEEG 70 (79)
Q Consensus 3 ~~fNQD~sc~~vgt~----------~GfrIyn~~~~d~~~~~~~~~~g~v~ivEmLf~s--nLlalVg~~~prkL~I~d~ 70 (79)
+.|..|+.-+-|++. ++-.|++...- +....=..|. .-..|-|+- ..+.++..+..+.|.|+|.
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC---eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 567888888887654 35668874332 2211101111 222233332 2333344335699999999
Q ss_pred CCCeEEeeC
Q psy6185 71 KNEEEEKKI 79 (79)
Q Consensus 71 ~~~~~I~~~ 79 (79)
++.+.+..|
T Consensus 345 ~t~kvv~~I 353 (368)
T 1mda_H 345 ASDQDQSSV 353 (368)
T ss_dssp SSCEEEEEC
T ss_pred CCCcEEEEE
Confidence 999998765
Done!