RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6185
         (79 letters)



>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 202

 Score = 24.9 bits (53), Expect = 1.3
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 10  LSLSVGTKSGYRLFSLNSIDTLEQIYENSQEDVC 43
           + L        + F L+S+D LEQ  +     +C
Sbjct: 163 IRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLC 196


>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 193

 Score = 24.1 bits (51), Expect = 2.0
 Identities = 3/31 (9%), Positives = 10/31 (32%)

Query: 15  GTKSGYRLFSLNSIDTLEQIYENSQEDVCIV 45
              +    F+++    L +      E +  +
Sbjct: 163 SIPTERYFFNVSDEAALLEKAGTLGEQIFSI 193


>d1jw2a_ a.23.5.1 (A:) Hemolysin expression modulating protein HHA
          {Escherichia coli [TaxId: 562]}
          Length = 72

 Score = 23.2 bits (50), Expect = 2.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 20 YRLFSLNSIDTLEQIYENSQEDVC 43
           RL    +IDTLE++ E ++ ++ 
Sbjct: 13 MRLRRCQTIDTLERVIEKNKYELS 36


>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 316

 Score = 23.9 bits (51), Expect = 3.0
 Identities = 8/57 (14%), Positives = 22/57 (38%)

Query: 23 FSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKKI 79
          +SL     L  +   S   V ++    +    A+  L     +  ++ ++  +E+ +
Sbjct: 1  YSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLM 57


>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 337

 Score = 23.6 bits (50), Expect = 3.1
 Identities = 10/56 (17%), Positives = 24/56 (42%)

Query: 24 SLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTKEEGKNEEEEKKI 79
          ++N  D L+ + + +   V +V    +    A+  L     + K+E  +   E ++
Sbjct: 3  TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRV 58


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.128    0.334 

Gapped
Lambda     K      H
   0.267   0.0463    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 243,939
Number of extensions: 8093
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 5
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.5 bits)