Query psy6187
Match_columns 667
No_of_seqs 311 out of 490
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 19:56:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3963|consensus 100.0 6.8E-82 1.5E-86 652.7 16.9 356 190-667 4-382 (382)
2 PF03281 Mab-21: Mab-21 protei 100.0 1.5E-56 3.3E-61 469.9 28.8 278 247-655 1-292 (292)
3 KOG3963|consensus 100.0 8.1E-48 1.7E-52 399.3 7.3 190 1-191 171-364 (382)
4 PF03281 Mab-21: Mab-21 protei 100.0 1.7E-40 3.7E-45 348.6 20.7 183 3-191 99-286 (292)
5 cd05400 NT_2-5OAS_ClassI-CCAas 74.8 41 0.00089 31.4 11.1 84 242-364 30-114 (143)
6 PF07528 DZF: DZF domain; Int 73.7 23 0.0005 37.3 9.9 79 575-660 148-234 (248)
7 smart00572 DZF domain in DSRM 61.8 43 0.00093 35.3 8.8 90 560-660 135-232 (246)
8 cd03572 ENTH_epsin_related ENT 52.6 76 0.0016 30.0 8.0 62 536-619 56-117 (122)
9 PRK13300 tRNA CCA-pyrophosphor 27.8 9.8E+02 0.021 27.5 13.5 25 339-364 101-125 (447)
10 cd05400 NT_2-5OAS_ClassI-CCAas 27.6 79 0.0017 29.5 4.0 26 3-28 88-114 (143)
11 smart00572 DZF domain in DSRM 27.4 4.3E+02 0.0093 28.0 9.7 69 99-181 132-200 (246)
12 cd06879 PX_UP1_plant The phosp 23.6 2.5E+02 0.0053 27.2 6.5 54 606-662 67-124 (138)
No 1
>KOG3963|consensus
Probab=100.00 E-value=6.8e-82 Score=652.69 Aligned_cols=356 Identities=68% Similarity=1.154 Sum_probs=332.7
Q ss_pred HHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHHhhcCCCCceeecc-ccCcccCCeeecCCCceEEEEEee-
Q psy6187 190 KQSKILYQLNKYYGERVQTRKASIAKTIREVCKVVQDVLREVEVQEPRFISSLT-ECNGRFEGLDVITPTEFEVVLYLN- 267 (667)
Q Consensus 190 ~q~~i~~~L~~~~~~~V~lr~~~vsq~v~ev~kIv~~ll~ev~~~d~rF~~~~~-~~g~~~e~lkv~~pd~f~v~vpL~- 267 (667)
.+..++|++++||.++|++|+++++++++|++++|+++++||+++|+||+++.. .+|+++||++|++|.+|.+.+||+
T Consensus 4 l~~~~v~~~~~~~~~rvqlr~~q~~~~i~ev~kvVq~l~~ev~~qe~rf~as~~~~~g~~~e~ldvl~p~~~~~~~~l~~ 83 (382)
T KOG3963|consen 4 LQQKTVYQLNRYLDERVQLRKAQIAKTIREVLKVVQDLLKEVEVQEPRFIASLSERTGGRFEGLDVLSPSEFETVLYLNF 83 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHhhccccCcceeccCCCccCcccCCeeEechhHhCCeeechh
Confidence 345799999999999999999999999999999999999999999999999754 466799999999999999999999
Q ss_pred ---------ecCccccccCCCCCceeEEeec--------CCCcccchhhHH-hhccCCccCHHHHHHHHHHHHHHHhhcc
Q psy6187 268 ---------QMGELNFVDDGSLPGCAVLKLS--------DGRKRSMSLWVE-FITASGYLSARKIRSRFQTLVAQACDKC 329 (667)
Q Consensus 268 ---------~~g~~~~~~~~~~pg~~~l~l~--------~~~~~~~~~W~~-~v~~~g~Lsp~KV~~~f~~lv~~ai~~~ 329 (667)
+||+++|++||+.|||++++++ +.+++|++.|++ +++++||++|+||++||+++|++|+.+|
T Consensus 84 l~~~r~~~~Q~~v~~~~~dgtl~~C~~~~Ls~~~~~e~t~~~~rS~~~wve~~~sas~~~~~~kv~~~F~~lv~~al~~c 163 (382)
T KOG3963|consen 84 LLLVRALKLQMGVFNFVDDGTLPGCAVLKLSLRLFDEGTDGRKRSMSLWVEHFNSASGYLSPAKVLSRFRTLVAQALDKC 163 (382)
T ss_pred hhcchhHHHhhcccccccccccCCCCccchhhhhhhhhhhhhhhhHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 778999999999 8999999999999999999999999999
Q ss_pred CcCCceeeecCCceEEEEEe---cEEEEEEEeeeeeCCCCCcccCCCCCCCCCCCChhhhHHHhhhcceecccccccccC
Q psy6187 330 DYRESVKMIADTTEVKLRIL---GKYVVQITPAFKCAGVWPRSASQWPQPDIAWPHPSIVAEIKAEGFDLLSKETFNITG 406 (667)
Q Consensus 330 ~~~~~v~~~~~~~~v~l~v~---~~~~vdlvP~v~~~~~wp~~a~~w~~~~~~wP~~~~~~~vk~~Gf~L~~~~~~~~~~ 406 (667)
.+++.+.|+.++.++++.+. .++.++|||||+++|.||++|++||.+..+||++.+++|||++||||+|+...++.+
T Consensus 164 ~~~~qv~Ml~~~~vvk~~~~~~~~~~~~eivPav~~~g~Wp~~A~~wpl~~~~WP~~~~~~evks~GF~ll~~~cs~~~~ 243 (382)
T KOG3963|consen 164 QLSDQVKMLGDTSVVKLRIRESIYRMLVEIVPAVHCPGIWPRSAAHWPLEHIPWPGPNRVEEVKSEGFNLLSKECSIKQG 243 (382)
T ss_pred hhccccccccchHHHHHHHHHHHHHHHHhhcceeecCCCCchhhhhCccccCCCCcHHHHHHHHhccccccchhhhhhhc
Confidence 99999999999999999998 477799999999999999999999999999999999999999999999965554555
Q ss_pred cccccccCchhcchHHHHHHHhcCCcccchhhhhhhhhccccCCCCCCcccccccceeeeeecCCCCCCccccccccccc
Q psy6187 407 KQSALEGDAWVMSFLEVEKRLLLGGCRRKCLSVLKTLRNRHLDLPGNPITNYCMKSLLLYECEKHPSENDWEDHCVEFIT 486 (667)
Q Consensus 407 ~~~~~~~~~WrlSf~~aE~~Ll~~G~R~~cl~~l~~l~~~~~~~~g~~~t~~hl~~~l~~~c~~~p~~~dW~~~~~~~~~ 486 (667)
|++ +++++||+||.+||..|.+||||++||++||.+++++.|+||+|
T Consensus 244 kn~-~~~~~Wrl~f~~aE~~L~~gg~rrk~~qi~k~Lr~~~id~pg~p-------------------------------- 290 (382)
T KOG3963|consen 244 KNS-MEEDAWRLSFAEAENRLEKGGCRRKCLQILKTLRDRHIDLPGNP-------------------------------- 290 (382)
T ss_pred cCC-cchhhHHHhhHHHHHHHHhcchHHHHHHHHHHHHHHHccCCCCC--------------------------------
Confidence 555 99999999999999999999999999998877776655555442
Q ss_pred cccccccccccccceeeeecccccCcccccccccchHHHHHHHhhccchhhHHHHHHHHHhhcccCCCCcchhhhhhhhh
Q psy6187 487 ASGYLSARKMRSRFQTLVAQACDKLSKTRDAWVMSFTDVESKLLIGGCRKKCLSILKTLRDRHLELPGNPKCLSILKTLR 566 (667)
Q Consensus 487 ~~~w~g~~~v~~~~~ylv~~~~~~~~~~~~~WrlSfs~~E~~ll~~~c~~~cL~llk~L~~~~~~~~~~~~~~~ilk~~~ 566 (667)
T Consensus 291 -------------------------------------------------------------------------------- 290 (382)
T KOG3963|consen 291 -------------------------------------------------------------------------------- 290 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccCCCCCCCchHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHHHHhHhcCCCCCcccCCCCCCCCCCHHHHHHH
Q psy6187 567 DRHLELPGNPVTNYHMKTLLLYECEKHPNELEWDESCLGDRINGILLQLISCLQCRRCPHYFLPHLDLFKGKSPSALENA 646 (667)
Q Consensus 567 ~~~l~~~g~~lssYhLKT~lL~~~~~~p~~~~W~~~~L~~rl~~lL~~L~~cL~~~~Lphffip~~NLf~~~~~~~l~~~ 646 (667)
++++|||||++||+|+++|.+++|+|+.+++||++++++|++||++++|||||||+.|||+|.++++++.+
T Consensus 291 ---------~it~yhLkt~mlw~CEkhp~~~dW~E~~~~~rl~gii~~L~~CL~~r~c~hYFip~~nLfe~~~~~tl~~~ 361 (382)
T KOG3963|consen 291 ---------KITNYHLKTLLLWECEKHPREYDWQEDCLGDRLLGIILQLISCLQCRRCPHYFLPNLNLFEHKPESTLELA 361 (382)
T ss_pred ---------cccHHHHHHHHHHHHhhCccccccchhHHHHHHHHHHHHHHHHHHhccCchhccccchhhcCCChHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhChhhhccC
Q psy6187 647 AKQVWRLTRELLTNSRALDKL 667 (667)
Q Consensus 647 ~~~~~~~~r~~~~~~~~~~~~ 667 (667)
|+.+|+++|+.+++|++++++
T Consensus 362 A~~l~~l~~~pl~~~~~~~~~ 382 (382)
T KOG3963|consen 362 AQKLWRLAREPLIHPRAAEEL 382 (382)
T ss_pred HHHHHHHHhhhhcChhhhhhC
Confidence 999999999999999999875
No 2
>PF03281 Mab-21: Mab-21 protein
Probab=100.00 E-value=1.5e-56 Score=469.95 Aligned_cols=278 Identities=40% Similarity=0.760 Sum_probs=242.7
Q ss_pred cccCCeeecCCCceEEEEEeeecCccc--cccCCCCCceeEEeecCCCcccchhhHHhhc-cCCccCHHHHHHHHHHHHH
Q psy6187 247 GRFEGLDVITPTEFEVVLYLNQMGELN--FVDDGSLPGCAVLKLSDGRKRSMSLWVEFIT-ASGYLSARKIRSRFQTLVA 323 (667)
Q Consensus 247 ~~~e~lkv~~pd~f~v~vpL~~~g~~~--~~~~~~~pg~~~l~l~~~~~~~~~~W~~~v~-~~g~Lsp~KV~~~f~~lv~ 323 (667)
|||||+||.+||||||+|||++++... +.+++..||++.+++ .+++.+.|+++++ .+|||||+||++||+++|+
T Consensus 1 S~ye~lkv~~pdefd~~v~L~~~~~~~~~~~~~~~~pg~~~l~l---~~~~~~~~~~~l~~~~~yLs~~kv~~~f~~lv~ 77 (292)
T PF03281_consen 1 SYYEGLKVGSPDEFDVMVPLKFPRNFKIFLEEDWSPPGYVFLRL---RPRDSSFWDQWLDCEDGYLSPSKVLSWFRKLVQ 77 (292)
T ss_pred CCccceEECCCCeEEEEEEecCCCCcceEeeecCCCCceEEEEe---ccCChhhHHHHHHhcCCeeCHHHHHHHHHHHHH
Confidence 699999999999999999999875443 455788999999999 3566788999988 8999999999999999999
Q ss_pred HHhhccCcCC------ceeeecCCceEEEEEe---cEEEEEEEeeeeeCCCCCcccCCCCCCCCCCCChhhhHHHhhhcc
Q psy6187 324 QACDKCDYRE------SVKMIADTTEVKLRIL---GKYVVQITPAFKCAGVWPRSASQWPQPDIAWPHPSIVAEIKAEGF 394 (667)
Q Consensus 324 ~ai~~~~~~~------~v~~~~~~~~v~l~v~---~~~~vdlvP~v~~~~~wp~~a~~w~~~~~~wP~~~~~~~vk~~Gf 394 (667)
+||+++.... .++..++|++++|.|+ ++|+|||||||++++.||+.|++|+....+||++..+++++++||
T Consensus 78 ~ai~~~~~~~~~~~~~~~~~~~~g~a~tl~v~~~~~~i~vdlVPa~~~~~~WP~~a~~~~~~~~~Wp~~~~~~~~~~~~~ 157 (292)
T PF03281_consen 78 KAINKCSHSSKRGYVSVISLKPGGPAVTLIVESGGRRISVDLVPAFEFPGGWPRSAQEWLRRFNGWPSPKLIQEIKSFGF 157 (292)
T ss_pred HHHHHhhccccCCccceeeccCCCceEEEEEecCCceEEEEEEEEEEEcCCCCcccccccccccCCCchhhhhhcccCce
Confidence 9999998766 3345567999999999 579999999999999999999999999999999999999999999
Q ss_pred eecccccccccCcccccccCchhcchHHHHHHHhcCCcccchhhhhhhhhccccCCCCCCcccccccceeeeeecCCCCC
Q psy6187 395 DLLSKETFNITGKQSALEGDAWVMSFLEVEKRLLLGGCRRKCLSVLKTLRNRHLDLPGNPITNYCMKSLLLYECEKHPSE 474 (667)
Q Consensus 395 ~L~~~~~~~~~~~~~~~~~~~WrlSf~~aE~~Ll~~G~R~~cl~~l~~l~~~~~~~~g~~~t~~hl~~~l~~~c~~~p~~ 474 (667)
+++|+. .++
T Consensus 158 ~lvpk~-----~~~------------------------------------------------------------------ 166 (292)
T PF03281_consen 158 HLVPKP-----CSP------------------------------------------------------------------ 166 (292)
T ss_pred EEeeec-----cCC------------------------------------------------------------------
Confidence 999971 111
Q ss_pred CccccccccccccccccccccccccceeeeecccccCcccccccccchHHHHHHHhh--ccchhhHHHHHHHHHhhcccC
Q psy6187 475 NDWEDHCVEFITASGYLSARKMRSRFQTLVAQACDKLSKTRDAWVMSFTDVESKLLI--GGCRKKCLSILKTLRDRHLEL 552 (667)
Q Consensus 475 ~dW~~~~~~~~~~~~w~g~~~v~~~~~ylv~~~~~~~~~~~~~WrlSfs~~E~~ll~--~~c~~~cL~llk~L~~~~~~~ 552 (667)
+..++++||+||+++|+++++ ++|+++||||||+|++.+
T Consensus 167 ------------------------------------~~~~~~~Wrlsf~~~E~~ll~~~~~~~~~~l~llk~l~~~~--- 207 (292)
T PF03281_consen 167 ------------------------------------NSDSENSWRLSFSVAERQLLKNLNGCRKKCLRLLKALRDRH--- 207 (292)
T ss_pred ------------------------------------CCCCCceEEEehHHHHHHHHHhccccHHHHHHHHHHHHHhc---
Confidence 123455666666666666666 589999999999999873
Q ss_pred CCCcchhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHHHHhHhcCCCCCcccCCC
Q psy6187 553 PGNPKCLSILKTLRDRHLELPGNPVTNYHMKTLLLYECEKHPNELEWDESCLGDRINGILLQLISCLQCRRCPHYFLPHL 632 (667)
Q Consensus 553 ~~~~~~~~ilk~~~~~~l~~~g~~lssYhLKT~lL~~~~~~p~~~~W~~~~L~~rl~~lL~~L~~cL~~~~Lphffip~~ 632 (667)
. ..++.|+||||||+|||+|++.|.+.+|+++++++||++||++|++||++|+|||||+|++
T Consensus 208 -----------------~-~~~~~l~syhLkt~ll~~~~~~p~~~~W~~~~l~~~l~~~l~~L~~~L~~~~Lphff~~~~ 269 (292)
T PF03281_consen 208 -----------------L-TNLSGLSSYHLKTVLLWLCEKHPSSSDWSEENLGERLLDLLDFLIKCLQEGRLPHFFIPNL 269 (292)
T ss_pred -----------------c-ccCCCccHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCccCCCCc
Confidence 1 0126899999999999999999998779999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q psy6187 633 DLFKGKSPSALENAAKQVWRLTR 655 (667)
Q Consensus 633 NLf~~~~~~~l~~~~~~~~~~~r 655 (667)
|||+++++.+++++++++++++|
T Consensus 270 NLf~~~~~~~~~~~~~~~~~i~~ 292 (292)
T PF03281_consen 270 NLFQHLSPEELDELARKLERILR 292 (292)
T ss_pred ccCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999875
No 3
>KOG3963|consensus
Probab=100.00 E-value=8.1e-48 Score=399.30 Aligned_cols=190 Identities=61% Similarity=1.151 Sum_probs=181.2
Q ss_pred CCCCCCeEEEEECceEE---EEEEEEEEeCCCCCCCCCCCCCCCCCCCChhhhhhhhhcceEEEeccccccCCCCCcccc
Q psy6187 1 MIADTTEVKLRILGKYV---VQITPAFKCAGVWPRSASQWPQPDIAWPHPSIVAEIKAEGFDLLSKETFNITGKQSALEG 77 (667)
Q Consensus 1 ~~~~~~~v~L~i~~~is---vDlVPa~~~~~~WP~~a~~W~~~~~~WP~~~~~~~vk~~Gf~LVPk~~~~~~~~~~~~~~ 77 (667)
|+.|++.|++.|..+|. +||||||+|+|+||++|++||.+..+||++.++++||++||||||+.+. .++..+++++
T Consensus 171 Ml~~~~vvk~~~~~~~~~~~~eivPav~~~g~Wp~~A~~wpl~~~~WP~~~~~~evks~GF~ll~~~cs-~~~~kn~~~~ 249 (382)
T KOG3963|consen 171 MLGDTSVVKLRIRESIYRMLVEIVPAVHCPGIWPRSAAHWPLEHIPWPGPNRVEEVKSEGFNLLSKECS-IKQGKNSMEE 249 (382)
T ss_pred cccchHHHHHHHHHHHHHHHHhhcceeecCCCCchhhhhCccccCCCCcHHHHHHHHhccccccchhhh-hhhccCCcch
Confidence 78899999999988555 9999999999999999999999999999999999999999999997764 4455567999
Q ss_pred CccccchHHHHHHHhcCCchhhHHHHHHHHHHhcCCCCCCC-cChHHHHHHHHHHHhcCCCCCCCccchhhhHHHHHHHH
Q psy6187 78 DAWVMSFLEVEKRLLLGGCRRKCLSVLKTLRNRHLDLPGNP-ITNYCMKSLLLYECEKHPSENDWEDHCVGDRINGIFLQ 156 (667)
Q Consensus 78 ~~WrlSF~~aE~~LL~~~crk~cL~ilK~L~~~~~~~~g~~-LtsYhLKTvLLw~ce~~P~~~dW~~~~l~~~l~~lL~~ 156 (667)
+.||++|+.+|..|.++|||++|++|||.|++.+.++||++ +|+|||||++||+||+||+.+||+|+++|++|++++++
T Consensus 250 ~~Wrl~f~~aE~~L~~gg~rrk~~qi~k~Lr~~~id~pg~p~it~yhLkt~mlw~CEkhp~~~dW~E~~~~~rl~gii~~ 329 (382)
T KOG3963|consen 250 DAWRLSFAEAENRLEKGGCRRKCLQILKTLRDRHIDLPGNPKITNYHLKTLLLWECEKHPREYDWQEDCLGDRLLGIILQ 329 (382)
T ss_pred hhHHHhhHHHHHHHHhcchHHHHHHHHHHHHHHHccCCCCCcccHHHHHHHHHHHHhhCccccccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCcCCCCCccCCCChhhhHHHHHH
Q psy6187 157 LISCLQCKRCPNYFVPQLDLFKGKTPSSLENAAKQ 191 (667)
Q Consensus 157 L~~CL~~r~LphfFip~~NLf~~~~~~~Ld~lA~q 191 (667)
|+.||++++|||||+|+.|||++.++.+|+.+|++
T Consensus 330 L~~CL~~r~c~hYFip~~nLfe~~~~~tl~~~A~~ 364 (382)
T KOG3963|consen 330 LISCLQCRRCPHYFLPNLNLFEHKPESTLELAAQK 364 (382)
T ss_pred HHHHHHhccCchhccccchhhcCCChHHHHHHHHH
Confidence 99999999999999999999999999999999987
No 4
>PF03281 Mab-21: Mab-21 protein
Probab=100.00 E-value=1.7e-40 Score=348.55 Aligned_cols=183 Identities=39% Similarity=0.798 Sum_probs=170.2
Q ss_pred CCCCeEEEEECce---EEEEEEEEEEeCCCCCCCCCCCCCCCCCCCChhhhhhhhhcceEEEeccccccCCCCCccccCc
Q psy6187 3 ADTTEVKLRILGK---YVVQITPAFKCAGVWPRSASQWPQPDIAWPHPSIVAEIKAEGFDLLSKETFNITGKQSALEGDA 79 (667)
Q Consensus 3 ~~~~~v~L~i~~~---isvDlVPa~~~~~~WP~~a~~W~~~~~~WP~~~~~~~vk~~Gf~LVPk~~~~~~~~~~~~~~~~ 79 (667)
..++.++|.|++. |+|||||||++++.||+.|++|+....+||++.++++++++||||||+.. .+...++++
T Consensus 99 ~~g~a~tl~v~~~~~~i~vdlVPa~~~~~~WP~~a~~~~~~~~~Wp~~~~~~~~~~~~~~lvpk~~-----~~~~~~~~~ 173 (292)
T PF03281_consen 99 PGGPAVTLIVESGGRRISVDLVPAFEFPGGWPRSAQEWLRRFNGWPSPKLIQEIKSFGFHLVPKPC-----SPNSDSENS 173 (292)
T ss_pred CCCceEEEEEecCCceEEEEEEEEEEEcCCCCcccccccccccCCCchhhhhhcccCceEEeeecc-----CCCCCCCce
Confidence 5788999999874 99999999999999999999999999999999999999999999999932 345667899
Q ss_pred cccchHHHHHHHhc--CCchhhHHHHHHHHHHhcCCCCCCCcChHHHHHHHHHHHhcCCCCCCCccchhhhHHHHHHHHH
Q psy6187 80 WVMSFLEVEKRLLL--GGCRRKCLSVLKTLRNRHLDLPGNPITNYCMKSLLLYECEKHPSENDWEDHCVGDRINGIFLQL 157 (667)
Q Consensus 80 WrlSF~~aE~~LL~--~~crk~cL~ilK~L~~~~~~~~g~~LtsYhLKTvLLw~ce~~P~~~dW~~~~l~~~l~~lL~~L 157 (667)
||+||+.+|+.+++ ++|+++||+|||+|++.+.. .+.+|+||||||+|||+|+++|.+.+|++..+++||++||++|
T Consensus 174 Wrlsf~~~E~~ll~~~~~~~~~~l~llk~l~~~~~~-~~~~l~syhLkt~ll~~~~~~p~~~~W~~~~l~~~l~~~l~~L 252 (292)
T PF03281_consen 174 WRLSFSVAERQLLKNLNGCRKKCLRLLKALRDRHLT-NLSGLSSYHLKTVLLWLCEKHPSSSDWSEENLGERLLDLLDFL 252 (292)
T ss_pred EEEehHHHHHHHHHhccccHHHHHHHHHHHHHhccc-cCCCccHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH
Confidence 99999999999999 69999999999999999862 2336999999999999999999778999999999999999999
Q ss_pred HHHhccCCCCCCcCCCCCccCCCChhhhHHHHHH
Q psy6187 158 ISCLQCKRCPNYFVPQLDLFKGKTPSSLENAAKQ 191 (667)
Q Consensus 158 ~~CL~~r~LphfFip~~NLf~~~~~~~Ld~lA~q 191 (667)
++||++|+|||||+|++|||+++++.+++.++++
T Consensus 253 ~~~L~~~~Lphff~~~~NLf~~~~~~~~~~~~~~ 286 (292)
T PF03281_consen 253 IKCLQEGRLPHFFIPNLNLFQHLSPEELDELARK 286 (292)
T ss_pred HHHHhcCCCCccCCCCcccCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999987
No 5
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more dis
Probab=74.78 E-value=41 Score=31.41 Aligned_cols=84 Identities=13% Similarity=0.239 Sum_probs=54.6
Q ss_pred ccccCcccCCeeecCCCceEEEEEeeecCccccccCCCCCceeEEeecCCCcccchhhHHhhccCCccCHHHHHHHHHHH
Q psy6187 242 LTECNGRFEGLDVITPTEFEVVLYLNQMGELNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTL 321 (667)
Q Consensus 242 ~~~~g~~~e~lkv~~pd~f~v~vpL~~~g~~~~~~~~~~pg~~~l~l~~~~~~~~~~W~~~v~~~g~Lsp~KV~~~f~~l 321 (667)
+...|||.-|--+-....+|++|.+..... . ....+.++++.+++.
T Consensus 30 ~~~~GS~a~~T~i~~~sDiD~~v~~~~~~~--~--------------------------------~~~~~~~~~~~l~~~ 75 (143)
T cd05400 30 VFLQGSYARGTALRGDSDIDLVVVLPDDTS--F--------------------------------AEYGPAELLDELGEA 75 (143)
T ss_pred EEEEcceeCCCCCCCCCceeEEEEEcCccc--c--------------------------------cccCHHHHHHHHHHH
Confidence 456788666644444578888887772200 0 124788888888888
Q ss_pred HHHHhhccCcCCceeeecCCceEEEEEec-EEEEEEEeeeeeCC
Q psy6187 322 VAQACDKCDYRESVKMIADTTEVKLRILG-KYVVQITPAFKCAG 364 (667)
Q Consensus 322 v~~ai~~~~~~~~v~~~~~~~~v~l~v~~-~~~vdlvP~v~~~~ 364 (667)
+.+.-.. .-.+...+..|++.... .+.||+||++....
T Consensus 76 L~~~~~~-----~~~~~~~~~~v~v~~~~~~~~vDvvP~~~~~~ 114 (143)
T cd05400 76 LKEYYGA-----NEEVKAQHRSVTVKFKGQGFHVDVVPAFEADS 114 (143)
T ss_pred HHHhcCc-----ccccccCceEEEEEEcCCCeEEEEEEEeecCC
Confidence 7774321 11122346788888874 89999999997765
No 6
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO). This domain is found exclusively in the metazoa.
Probab=73.69 E-value=23 Score=37.27 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=56.7
Q ss_pred CCCchHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHHHHhHhcCCCC----Cccc----CCCCCCCCCCHHHHHHH
Q psy6187 575 NPVTNYHMKTLLLYECEKHPNELEWDESCLGDRINGILLQLISCLQCRRCP----HYFL----PHLDLFKGKSPSALENA 646 (667)
Q Consensus 575 ~~lssYhLKT~lL~~~~~~p~~~~W~~~~L~~rl~~lL~~L~~cL~~~~Lp----hffi----p~~NLf~~~~~~~l~~~ 646 (667)
.+|+++.|-=+.-+.+...|.. +.-.+++.|..++ +||-.|-|. -... ++.|.++.++....|.+
T Consensus 148 ~~L~~W~leLL~~~~i~~~~~~---~~l~~g~a~RRvl----e~lasGillp~~~gl~DPcE~~~~~~~~~lt~qq~e~i 220 (248)
T PF07528_consen 148 QPLSSWALELLVEKAISNNSSR---QPLSPGDAFRRVL----ECLASGILLPGSPGLRDPCEKDPVDVLDTLTLQQREDI 220 (248)
T ss_pred CCCChhHHHHHHHHHeeeCCCC---CCCChHHHHHHHH----HHHhCceecCCCCCCcCCCCCCCceeeccCCHHHHHHH
Confidence 6899998887777776644443 2455677776654 566666542 2222 38899999999999999
Q ss_pred HHHHHHHHHHHHhC
Q psy6187 647 AKQVWRLTRELLTN 660 (667)
Q Consensus 647 ~~~~~~~~r~~~~~ 660 (667)
-..+..++|-|..+
T Consensus 221 t~sAQ~~LRllafg 234 (248)
T PF07528_consen 221 TSSAQTALRLLAFG 234 (248)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 7
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins.
Probab=61.81 E-value=43 Score=35.30 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=62.9
Q ss_pred hhhhhhhhcccCCCC-CCCchHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHHHHhHhcCCCCCc---cc----CC
Q psy6187 560 SILKTLRDRHLELPG-NPVTNYHMKTLLLYECEKHPNELEWDESCLGDRINGILLQLISCLQCRRCPHY---FL----PH 631 (667)
Q Consensus 560 ~ilk~~~~~~l~~~g-~~lssYhLKT~lL~~~~~~p~~~~W~~~~L~~rl~~lL~~L~~cL~~~~Lphf---fi----p~ 631 (667)
||||-++.+. ++ .+|+++.+--+.=+.+.. . =+....+++|..+++.+...+- +|.+ .. ++
T Consensus 135 RilKd~~~R~---~~~~pL~~w~iELl~~~~i~~--~---~~~l~~~~a~RR~fe~lAsG~l---~p~~~gI~DPce~~~ 203 (246)
T smart00572 135 RVLRDLCNRV---PTWQPLSGWPLELLVEKAIGS--A---RQPLGLGDAFRRVFECLASGIL---LPGSPGLTDPCEKDN 203 (246)
T ss_pred HHHHHHHHhc---ccccccccccHHHHHHHHhcc--C---CCCCCHHHHHHHHHHHHHhccC---cCCCCCCcCCCCCCc
Confidence 4445444433 22 479999999888777762 2 2467889999988777665543 2222 11 37
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy6187 632 LDLFKGKSPSALENAAKQVWRLTRELLTN 660 (667)
Q Consensus 632 ~NLf~~~~~~~l~~~~~~~~~~~r~~~~~ 660 (667)
.|....++.+.-|.+...+..++|-+.-+
T Consensus 204 ~nv~~~lT~qqrd~It~sAQ~alRl~Afg 232 (246)
T smart00572 204 TDALTALTLQQREDVTASAQTALRLLAFG 232 (246)
T ss_pred ccHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999887654
No 8
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=52.56 E-value=76 Score=29.96 Aligned_cols=62 Identities=23% Similarity=0.363 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHhhcccCCCCcchhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHH
Q psy6187 536 KKCLSILKTLRDRHLELPGNPKCLSILKTLRDRHLELPGNPVTNYHMKTLLLYECEKHPNELEWDESCLGDRINGILLQL 615 (667)
Q Consensus 536 ~~cL~llk~L~~~~~~~~~~~~~~~ilk~~~~~~l~~~g~~lssYhLKT~lL~~~~~~p~~~~W~~~~L~~rl~~lL~~L 615 (667)
.+||+|||+|++. +...+.+.++ -.+|.+||+.=+ +.|.+. =.++.+.+....--.++
T Consensus 56 ~K~Lrilk~l~~~-----G~~~f~~~~~-------------~~~~~Ik~~~~f---~g~~Dp-~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 56 LKVLKIIKHLCEK-----GNSDFKRELQ-------------RNSAQIRECANY---KGPPDP-LKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHhh-----CCHHHHHHHH-------------HhHHHHHHHHHc---CCCCCc-ccCcchhHHHHHHHHHH
Confidence 4777777777765 2333322222 246888884443 343321 23566777777766666
Q ss_pred HHhH
Q psy6187 616 ISCL 619 (667)
Q Consensus 616 ~~cL 619 (667)
.+.|
T Consensus 114 ~~~i 117 (122)
T cd03572 114 IKAI 117 (122)
T ss_pred HHHH
Confidence 6655
No 9
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional
Probab=27.82 E-value=9.8e+02 Score=27.55 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=20.0
Q ss_pred cCCceEEEEEecEEEEEEEeeeeeCC
Q psy6187 339 ADTTEVKLRILGKYVVQITPAFKCAG 364 (667)
Q Consensus 339 ~~~~~v~l~v~~~~~vdlvP~v~~~~ 364 (667)
...+-|++.+. -+.||+||+++...
T Consensus 101 aeHpyv~~~~~-G~~VDiVPcy~v~~ 125 (447)
T PRK13300 101 AEHPYVTGEID-GFEVDIVPCYKVES 125 (447)
T ss_pred ccCceEEEEEC-CEEEEEEeeEEccC
Confidence 34577777776 99999999997775
No 10
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more dis
Probab=27.55 E-value=79 Score=29.48 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=22.4
Q ss_pred CCCCeEEEEECc-eEEEEEEEEEEeCC
Q psy6187 3 ADTTEVKLRILG-KYVVQITPAFKCAG 28 (667)
Q Consensus 3 ~~~~~v~L~i~~-~isvDlVPa~~~~~ 28 (667)
.++..|++...+ .+.||+||++...+
T Consensus 88 ~~~~~v~v~~~~~~~~vDvvP~~~~~~ 114 (143)
T cd05400 88 AQHRSVTVKFKGQGFHVDVVPAFEADS 114 (143)
T ss_pred cCceEEEEEEcCCCeEEEEEEEeecCC
Confidence 467788888887 89999999999876
No 11
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins.
Probab=27.45 E-value=4.3e+02 Score=27.99 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhcCCCCCCCcChHHHHHHHHHHHhcCCCCCCCccchhhhHHHHHHHHHHHHhccCCCCCCcCCCCCccC
Q psy6187 99 KCLSVLKTLRNRHLDLPGNPITNYCMKSLLLYECEKHPSENDWEDHCVGDRINGIFLQLISCLQCKRCPNYFVPQLDLFK 178 (667)
Q Consensus 99 ~cL~ilK~L~~~~~~~~g~~LtsYhLKTvLLw~ce~~P~~~dW~~~~l~~~l~~lL~~L~~CL~~r~LphfFip~~NLf~ 178 (667)
-.+||||-++.+..... +|+++.+--+.-+.+.... +....+++|.++| .||.+|.| |-.+..+..
T Consensus 132 iviRilKd~~~R~~~~~--pL~~w~iELl~~~~i~~~~-----~~l~~~~a~RR~f----e~lAsG~l---~p~~~gI~D 197 (246)
T smart00572 132 IVIRVLRDLCNRVPTWQ--PLSGWPLELLVEKAIGSAR-----QPLGLGDAFRRVF----ECLASGIL---LPGSPGLTD 197 (246)
T ss_pred hHHHHHHHHHHhccccc--ccccccHHHHHHHHhccCC-----CCCCHHHHHHHHH----HHHHhccC---cCCCCCCcC
Confidence 34577777777753221 5888888887777776332 3445566666655 67777766 323344544
Q ss_pred CCC
Q psy6187 179 GKT 181 (667)
Q Consensus 179 ~~~ 181 (667)
-..
T Consensus 198 Pce 200 (246)
T smart00572 198 PCE 200 (246)
T ss_pred CCC
Confidence 443
No 12
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=23.59 E-value=2.5e+02 Score=27.19 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhHh----cCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhChh
Q psy6187 606 DRINGILLQLISCLQ----CRRCPHYFLPHLDLFKGKSPSALENAAKQVWRLTRELLTNSR 662 (667)
Q Consensus 606 ~rl~~lL~~L~~cL~----~~~Lphffip~~NLf~~~~~~~l~~~~~~~~~~~r~~~~~~~ 662 (667)
.|+-|++. |.+.|+ ...+|.+ |+-.++...+++.+++=...+-+-+..|+.||+
T Consensus 67 RRYSDF~~-L~~~L~~~~p~~~lPpl--PpK~~l~~~~~~fiEeRR~gLE~fLq~Ll~~p~ 124 (138)
T cd06879 67 RRFNDFLK-LHTDLKKLFPKKKLPAA--PPKGLLRMKNRALLEERRHSLEEWMGKLLSDID 124 (138)
T ss_pred cCchHHHH-HHHHHHHHCCCCcCCCC--CCcccccCCCHHHHHHHHHHHHHHHHHHHcCcc
Confidence 45544433 334443 3446665 888899999999999999999999999999986
Done!