Query psy6187
Match_columns 667
No_of_seqs 311 out of 490
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 19:56:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1px5_A 2'-5'-oligoadenylate sy 96.5 0.98 3.4E-05 47.7 26.5 118 518-662 185-331 (349)
2 1px5_A 2'-5'-oligoadenylate sy 91.8 0.5 1.7E-05 50.0 9.3 140 7-175 130-277 (349)
3 4at7_A Interleukin enhancer-bi 84.9 3.3 0.00011 44.2 9.7 79 575-660 212-298 (364)
4 4at7_B NF90, interleukin enhan 49.9 1.3E+02 0.0043 32.3 12.0 94 559-659 232-329 (383)
5 4at7_A Interleukin enhancer-bi 16.6 1.7E+02 0.0059 31.1 5.8 61 96-165 193-253 (364)
6 3lui_A Sorting nexin-17, SNX17 10.3 7.7E+02 0.026 21.0 7.4 34 629-663 62-95 (115)
7 3nyb_A Poly(A) RNA polymerase 10.2 3.4E+02 0.012 27.9 5.8 42 575-616 182-226 (323)
8 1vdy_A Hypothetical protein (R 10.0 2.6E+02 0.009 25.6 4.3 63 536-620 67-129 (140)
9 2ex3_B Protein GP3, DNA termin 9.7 1.2E+02 0.004 29.0 1.8 54 206-261 48-104 (230)
10 2csk_A Sorting nexin 12; SNX12 9.0 6.2E+02 0.021 22.5 6.5 57 603-662 48-116 (146)
No 1
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=96.55 E-value=0.98 Score=47.69 Aligned_cols=118 Identities=14% Similarity=0.190 Sum_probs=73.7
Q ss_pred cccchHHHHHHHhhc--cchhhHHHHHHHHHhhcccCCCCcchhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHhcCCC
Q psy6187 518 WVMSFTDVESKLLIG--GCRKKCLSILKTLRDRHLELPGNPKCLSILKTLRDRHLELPGNPVTNYHMKTLLLYECEKHPN 595 (667)
Q Consensus 518 WrlSfs~~E~~ll~~--~c~~~cL~llk~L~~~~~~~~~~~~~~~ilk~~~~~~l~~~g~~lssYhLKT~lL~~~~~~p~ 595 (667)
|..+|+....+++++ .-.|..+||+|+.+.... ..+ .+..++||.|--+..++.+..+.
T Consensus 185 ~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~~~~-----------------~~~--~~~~~ssy~lELL~~~a~e~~~~ 245 (349)
T 1px5_A 185 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCK-----------------KTH--GNKLPPQYALELLTVYAWEQGSR 245 (349)
T ss_dssp TGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH-----------------TTC--SSCCCCHHHHHHHHHHHHHHHTC
T ss_pred chhcCHHHHHHHHHhCcHHHHHHHHHHHHHHHHhh-----------------hcc--cCCCCChHHHHHHHHHHHHhCCC
Confidence 444555555555542 234688999999886620 011 12578999999999999986554
Q ss_pred CCCCCcccHHHHHHHHHHHHHHhHh------------------------cCCCCCccc---CCCCCCCCCCHHHHHHHHH
Q psy6187 596 ELEWDESCLGDRINGILLQLISCLQ------------------------CRRCPHYFL---PHLDLFKGKSPSALENAAK 648 (667)
Q Consensus 596 ~~~W~~~~L~~rl~~lL~~L~~cL~------------------------~~~Lphffi---p~~NLf~~~~~~~l~~~~~ 648 (667)
.. +-++++.|..+|+.+.+... ++.-|.-.. |+.|.-+. +....+.++.
T Consensus 246 ~~---~~~~~~~f~~vle~l~~~~~~~i~w~~~y~~~~~~~~~fl~~~l~~~~p~I~DP~dp~~NVa~~-~~~~~~~~~~ 321 (349)
T 1px5_A 246 KT---DFSTAQGFQTVLELVLKHQKLCIFWEAYYDFTNPVVGRCMLQQLKKPRPVILDPADPTGNVGGG-DTHSWQRLAQ 321 (349)
T ss_dssp CS---SCCHHHHHHHHHHHHHTGGGCEECCCSSCCSSSHHHHHHHHHHHTSSSCEEBCTTCTTCBTTCS-CHHHHHHHHH
T ss_pred cc---CCCHHHHHHHHHHHHHhCCccceeeeccccccchhHHhhhhhhhcCCCCeeeCCCCCCCcccCC-chhhHHHHHH
Confidence 33 44678899999988877531 000111222 46787666 7788887776
Q ss_pred HHHHHHHHHHhChh
Q psy6187 649 QVWRLTRELLTNSR 662 (667)
Q Consensus 649 ~~~~~~r~~~~~~~ 662 (667)
++ |..+.+|-
T Consensus 322 ~A----~~~l~~~~ 331 (349)
T 1px5_A 322 EA----RVWLGYPC 331 (349)
T ss_dssp HH----HHHTTSGG
T ss_pred HH----HHHHhchh
Confidence 65 55555553
No 2
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=91.76 E-value=0.5 Score=49.95 Aligned_cols=140 Identities=13% Similarity=0.238 Sum_probs=87.0
Q ss_pred eEEEEEC-----ceEEEEEEEEEEeCCCCCCCCCCCCCCCCCCCChhhhhhhhhcceEEEeccccccCCCCCccccCccc
Q psy6187 7 EVKLRIL-----GKYVVQITPAFKCAGVWPRSASQWPQPDIAWPHPSIVAEIKAEGFDLLSKETFNITGKQSALEGDAWV 81 (667)
Q Consensus 7 ~v~L~i~-----~~isvDlVPa~~~~~~WP~~a~~W~~~~~~WP~~~~~~~vk~~Gf~LVPk~~~~~~~~~~~~~~~~Wr 81 (667)
.|++.+. ..+.||+|||++.-+.. . ....|+++.-..+.. .... ..++..|.
T Consensus 130 ~v~~~~~~~~~~~~~~vDVvPa~~~l~~~---~------~~~~~~~~~y~~li~-------~~~~-------~~~~g~~~ 186 (349)
T 1px5_A 130 ALSFVLSSPQLQQEVEFDVLPAFDALGQW---T------PGYKPNPEIYVQLIK-------ECKS-------RGKEGEFS 186 (349)
T ss_dssp CCEEEEEETTTTEEEEEEEEEEECSSCSC---C------TTSCCCHHHHHHHHH-------HHHH-------HTCTTTTG
T ss_pred eEEEEEEccCcCCceEEEEEEehhhhccc---c------cccCCChHHHHHHHh-------hccc-------cccCccch
Confidence 3666663 47999999999853311 0 112344543322211 1100 00123799
Q ss_pred cchHHHHHHHhcCC--chhhHHHHHHHHHHhcCC-CCCCCcChHHHHHHHHHHHhcCCCCCCCccchhhhHHHHHHHHHH
Q psy6187 82 MSFLEVEKRLLLGG--CRRKCLSVLKTLRNRHLD-LPGNPITNYCMKSLLLYECEKHPSENDWEDHCVGDRINGIFLQLI 158 (667)
Q Consensus 82 lSF~~aE~~LL~~~--crk~cL~ilK~L~~~~~~-~~g~~LtsYhLKTvLLw~ce~~P~~~dW~~~~l~~~l~~lL~~L~ 158 (667)
.+|+..-...+++. -.+..+|++|..+..... ..+..++||.|-.+..++++..+... +....+.|..+|..+.
T Consensus 187 ~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~~~~~~~~~~~~ssy~lELL~~~a~e~~~~~~---~~~~~~~f~~vle~l~ 263 (349)
T 1px5_A 187 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSRKT---DFSTAQGFQTVLELVL 263 (349)
T ss_dssp GGGHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHHTCCS---SCCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHhCcHHHHHHHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHHHhCCCcc---CCCHHHHHHHHHHHHH
Confidence 99999888888742 237889999999987632 12236899999999999999765333 3345667777776665
Q ss_pred HHhccCCCCCCcCCCCC
Q psy6187 159 SCLQCKRCPNYFVPQLD 175 (667)
Q Consensus 159 ~CL~~r~LphfFip~~N 175 (667)
+. +.+.-||...+|
T Consensus 264 ~~---~~~~i~w~~~y~ 277 (349)
T 1px5_A 264 KH---QKLCIFWEAYYD 277 (349)
T ss_dssp TG---GGCEECCCSSCC
T ss_pred hC---Cccceeeecccc
Confidence 53 245557776665
No 3
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=84.93 E-value=3.3 Score=44.18 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=57.2
Q ss_pred CCCchHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHHHHhHhcCCCC----Cccc----CCCCCCCCCCHHHHHHH
Q psy6187 575 NPVTNYHMKTLLLYECEKHPNELEWDESCLGDRINGILLQLISCLQCRRCP----HYFL----PHLDLFKGKSPSALENA 646 (667)
Q Consensus 575 ~~lssYhLKT~lL~~~~~~p~~~~W~~~~L~~rl~~lL~~L~~cL~~~~Lp----hffi----p~~NLf~~~~~~~l~~~ 646 (667)
..|++|.|--+.-+..+..|.. +.-.+++.|..+|.-| ..|-|. --.. ++.|....++.+.-|.+
T Consensus 212 ~pL~~waLELL~~~Ai~s~~~~---~~l~~~~afRRVLElL----AsGillp~~~Gi~DPCE~~~~~v~~~lt~qq~e~i 284 (364)
T 4at7_A 212 EPLTPWILDLLGHYAVMNNPTR---QPLALNVAYRRCLQIL----AAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMV 284 (364)
T ss_dssp TTCCHHHHHHHHHHHHHSSTTS---SCCCHHHHHHHHHHHH----HTTTTSTTBCCCBCTTSSSCCBGGGGSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCC---CCcCHHHHHHHHHHHH----HhCcccCCCCCCcCCCCCCCcchhccCCHHHHHHH
Confidence 5799999999999999976554 3567888888766554 444322 1111 16778888998888988
Q ss_pred HHHHHHHHHHHHhC
Q psy6187 647 AKQVWRLTRELLTN 660 (667)
Q Consensus 647 ~~~~~~~~r~~~~~ 660 (667)
...+..++|-|.-+
T Consensus 285 t~sAQ~~LRllafg 298 (364)
T 4at7_A 285 CYTAQTLVRILSHG 298 (364)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888887643
No 4
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=49.88 E-value=1.3e+02 Score=32.35 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=63.9
Q ss_pred hhhhhhhhhcccCCCCCCCchHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHHHHhHhcCCCCCcccC----CCCC
Q psy6187 559 LSILKTLRDRHLELPGNPVTNYHMKTLLLYECEKHPNELEWDESCLGDRINGILLQLISCLQCRRCPHYFLP----HLDL 634 (667)
Q Consensus 559 ~~ilk~~~~~~l~~~g~~lssYhLKT~lL~~~~~~p~~~~W~~~~L~~rl~~lL~~L~~cL~~~~Lphffip----~~NL 634 (667)
+||||-++.+...+ ..|+.|.|--+.-++++. +. ++-.+++.|..+|..|...+.=..=|--..| +.+.
T Consensus 232 IRilkdlc~R~~~~--~pL~~waLELL~~~ai~s-~~----~~l~~~~afRRVLEllasG~lLp~~pgI~DPcEk~pt~~ 304 (383)
T 4at7_B 232 IRVLRDLCTRVPTW--GPLRGWPLELLCEKSIGT-AN----RPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEATDA 304 (383)
T ss_dssp HHHHHHHHHHCGGG--GGGTTHHHHHHHHHHHHT-SS----SCCCHHHHHHHHHHHHHTTTTSTTSCCCBCTTCSSCCBT
T ss_pred eehhhHHHHhcCCc--CCCcHhHHHHHHHHHhhC-CC----CCCCHHHHHHHHHHHHhcCcccCCCCCccCCCCCCCccc
Confidence 35566655555322 579999999999998884 22 3567888888877655544321111222222 5678
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Q psy6187 635 FKGKSPSALENAAKQVWRLTRELLT 659 (667)
Q Consensus 635 f~~~~~~~l~~~~~~~~~~~r~~~~ 659 (667)
+++++...-|.++..+..++|.+.-
T Consensus 305 ~~~lt~qq~e~it~sAQ~~LR~~af 329 (383)
T 4at7_B 305 IGHLDRQQREDITQSAQHALRLAAF 329 (383)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999998764
No 5
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=16.64 E-value=1.7e+02 Score=31.12 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=42.8
Q ss_pred chhhHHHHHHHHHHhcCCCCCCCcChHHHHHHHHHHHhcCCCCCCCccchhhhHHHHHHHHHHHHhccCC
Q psy6187 96 CRRKCLSVLKTLRNRHLDLPGNPITNYCMKSLLLYECEKHPSENDWEDHCVGDRINGIFLQLISCLQCKR 165 (667)
Q Consensus 96 crk~cL~ilK~L~~~~~~~~g~~LtsYhLKTvLLw~ce~~P~~~dW~~~~l~~~l~~lL~~L~~CL~~r~ 165 (667)
|-+..+||||.++.+.... .+|+.|.|--+.-++++..|.. +....+++|.++| .||..|-
T Consensus 193 ~v~~lIRIlkDlc~R~~~w--~pL~~waLELL~~~Ai~s~~~~---~~l~~~~afRRVL----ElLAsGi 253 (364)
T 4at7_A 193 TVKVLIRLLKDLRIRFPGF--EPLTPWILDLLGHYAVMNNPTR---QPLALNVAYRRCL----QILAAGL 253 (364)
T ss_dssp HHHHHHHHHHHHHHHCGGG--TTCCHHHHHHHHHHHHHSSTTS---SCCCHHHHHHHHH----HHHHTTT
T ss_pred ccceeehhhHHHHHhcCCc--CCCCHHHHHHHHHHHHhcCCCC---CCcCHHHHHHHHH----HHHHhCc
Confidence 3345678999988886322 3699999999999999976532 3555666776655 6777773
No 6
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=10.28 E-value=7.7e+02 Score=20.97 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=29.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhChhh
Q psy6187 629 LPHLDLFKGKSPSALENAAKQVWRLTRELLTNSRA 663 (667)
Q Consensus 629 ip~~NLf~~~~~~~l~~~~~~~~~~~r~~~~~~~~ 663 (667)
+|+-.+| +++++.+++-...+-..++.|+.+|.-
T Consensus 62 lP~K~~~-~~~~~~ie~Rr~~Le~yL~~l~~~p~l 95 (115)
T 3lui_A 62 FPPKKLF-SLTPAEVEQRREQLEKYMQAVRQDPLL 95 (115)
T ss_dssp CCCCCSS-CCCHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred CCCCccc-CCCHHHHHHHHHHHHHHHHHHHcChhh
Confidence 4777777 589999999999999999999998864
No 7
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=10.17 E-value=3.4e+02 Score=27.88 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=34.2
Q ss_pred CCCchHHHHHHHHHHHhcCCCCC---CCCcccHHHHHHHHHHHHH
Q psy6187 575 NPVTNYHMKTLLLYECEKHPNEL---EWDESCLGDRINGILLQLI 616 (667)
Q Consensus 575 ~~lssYhLKT~lL~~~~~~p~~~---~W~~~~L~~rl~~lL~~L~ 616 (667)
+.|+||.+-.++++.|..+|... .-...++++.|.+++++..
T Consensus 182 G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~ 226 (323)
T 3nyb_A 182 GGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYG 226 (323)
T ss_dssp TCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCCccCcccCCccccHHHHHHHHHHHhc
Confidence 36999999999999999887421 1235789999999999998
No 8
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=9.99 E-value=2.6e+02 Score=25.61 Aligned_cols=63 Identities=14% Similarity=0.229 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHhhcccCCCCcchhhhhhhhhhcccCCCCCCCchHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHH
Q psy6187 536 KKCLSILKTLRDRHLELPGNPKCLSILKTLRDRHLELPGNPVTNYHMKTLLLYECEKHPNELEWDESCLGDRINGILLQL 615 (667)
Q Consensus 536 ~~cL~llk~L~~~~~~~~~~~~~~~ilk~~~~~~l~~~g~~lssYhLKT~lL~~~~~~p~~~~W~~~~L~~rl~~lL~~L 615 (667)
.+||+||+||+.. +...+.+-++. .+|.|||+.=+ +.+.+. =..+.++.....--.+|
T Consensus 67 ~KaL~lL~yL~~~-----Gs~~f~~~~r~-------------~~~~Ik~l~~F---~g~~dp-~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 67 QKALRLIKYAVGK-----SGSEFRREMQR-------------NSVAVRNLFHY---KGHPDP-LKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHTTT-----SCHHHHHHHHH-------------TTHHHHTTTTC---CCCCCT-TTSSCHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHh-----CCHHHHHHHHH-------------hHHHHHHHHhc---CCCCCc-ccccchhHHHHHHHHHH
Confidence 3788888888754 33332222211 24556654422 223221 23456777777777777
Q ss_pred HHhHh
Q psy6187 616 ISCLQ 620 (667)
Q Consensus 616 ~~cL~ 620 (667)
+..|.
T Consensus 125 ~~ll~ 129 (140)
T 1vdy_A 125 ISAIF 129 (140)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77764
No 9
>2ex3_B Protein GP3, DNA terminal protein; DNA polymerase: protein primer complex, transferase-replicat complex; HET: DNA; 3.00A {Bacillus phage PHI29} SCOP: a.263.1.1
Probab=9.69 E-value=1.2e+02 Score=29.04 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=21.9
Q ss_pred cccchHHHH---HHHHHHHHHHHHHHHHhhcCCCCceeeccccCcccCCeeecCCCceE
Q psy6187 206 VQTRKASIA---KTIREVCKVVQDVLREVEVQEPRFISSLTECNGRFEGLDVITPTEFE 261 (667)
Q Consensus 206 V~lr~~~vs---q~v~ev~kIv~~ll~ev~~~d~rF~~~~~~~g~~~e~lkv~~pd~f~ 261 (667)
|..+++.+. +.-.++|+||.++++++.. -.|++-=...|...+++++++|.++.
T Consensus 48 vVaSKaki~EI~~nTKeaQrvvde~~~~~~D--ke~isGGk~qGTvgqr~~~lsp~~vt 104 (230)
T 2ex3_B 48 VVASKAKIAEIERNTKEVQRLVDEKIKAMKD--KEYYAGGKPQGTIEQRIAMTSPAHVT 104 (230)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHC--------------------C
T ss_pred eeeeHHHHHHHHhccHHHHHHHHHHHHHhcC--CcceeCCCCCCcHHhhHhhcChhhcC
Confidence 444554444 4556899999999988753 34544224556778888888887643
No 10
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=9.02 E-value=6.2e+02 Score=22.51 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHHHhHhcCCCCCccc---CCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHhChh
Q psy6187 603 CLGDRINGILLQLISCLQCRRCPHYFL---PHLDLF---------KGKSPSALENAAKQVWRLTRELLTNSR 662 (667)
Q Consensus 603 ~L~~rl~~lL~~L~~cL~~~~Lphffi---p~~NLf---------~~~~~~~l~~~~~~~~~~~r~~~~~~~ 662 (667)
.+..|+-++. .|.+.|++. |...+ |+-.+| ..++++.+++-...+-..++.|+.+|.
T Consensus 48 ~V~RRYsdF~-~L~~~L~~~--~~~~iP~lP~K~~~~~~~~~~~~g~~~~~fie~Rr~~Le~fL~~l~~~p~ 116 (146)
T 2csk_A 48 CVRRRYSDFE-WLKNELERD--SKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPL 116 (146)
T ss_dssp EEEECHHHHH-HHHHHHSSS--SSCCCCCCSCCCCCCSSTTCCCSSCCCHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred EEEecHHHHH-HHHHHHHhc--cCCcCCCCCCCchhhccccccccCCCCHHHHHHHHHHHHHHHHHHHcChh
Confidence 4556666543 477777653 44445 455666 467899999999999999999999885
Done!