Query psy6187
Match_columns 667
No_of_seqs 311 out of 490
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 19:56:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6187.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6187hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1px5a2 d.218.1.6 (A:1-200) 2' 74.2 9.9 0.00072 35.0 10.8 134 198-364 11-156 (200)
2 d1r89a2 d.218.1.7 (A:1-142) tR 40.0 46 0.0033 28.5 8.2 22 343-364 97-119 (142)
3 d2b4va1 a.160.1.4 (A:289-471) 22.2 1.7E+02 0.012 24.6 9.1 43 575-617 26-91 (183)
4 d1xtea_ d.189.1.1 (A:) Serine/ 13.7 1.9E+02 0.014 22.6 6.7 36 628-663 63-98 (116)
5 d1dq3a2 d.50.3.1 (A:336-414) P 13.3 60 0.0044 24.3 2.8 41 281-325 26-66 (79)
6 d1wsta1 c.67.1.1 (A:13-415) Mu 12.1 49 0.0035 31.8 2.7 58 43-110 340-398 (403)
7 d1r89a2 d.218.1.7 (A:1-142) tR 10.8 64 0.0047 27.5 2.7 21 8-28 98-119 (142)
8 d1id0a_ d.122.1.3 (A:) Histidi 10.1 1.4E+02 0.01 24.7 4.7 23 309-331 40-62 (146)
9 d2g7sa1 a.4.1.9 (A:3-76) Putat 10.0 90 0.0065 22.7 3.0 50 179-228 21-71 (74)
10 d1v7ba1 a.4.1.9 (A:1-74) Trans 9.7 1.3E+02 0.0094 21.7 3.9 32 179-210 21-53 (74)
No 1
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=74.17 E-value=9.9 Score=35.00 Aligned_cols=134 Identities=13% Similarity=0.226 Sum_probs=68.3
Q ss_pred HHhhhccccccchHHHHHHHHHHHHHHHHHHHHhhcC--CCCceee-ccccCcccCCeeecCCCceEEEEEeeecCcccc
Q psy6187 198 LNKYYGERVQTRKASIAKTIREVCKVVQDVLREVEVQ--EPRFISS-LTECNGRFEGLDVITPTEFEVVLYLNQMGELNF 274 (667)
Q Consensus 198 L~~~~~~~V~lr~~~vsq~v~ev~kIv~~ll~ev~~~--d~rF~~~-~~~~g~~~e~lkv~~pd~f~v~vpL~~~g~~~~ 274 (667)
|+.|..++++..+.-. ..+.++.+.+..-++|=-.+ ++.|.+. +.-+|||..|--.-.-++.|++|.|+ +.-.|
T Consensus 11 Ld~fI~~~Lqp~~~f~-~~~~~avd~i~~fLke~cf~~~~~~v~V~kVvKGGS~gkGTaLr~~SDvDlVvFls--~l~sf 87 (200)
T d1px5a2 11 LDKFIEDHLLPNTCFR-TQVKEAIDIVCRFLKERCFQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVVFLT--KLTSF 87 (200)
T ss_dssp HHHHHHHHTSCCHHHH-HHHHHHHHHHHHHHHHHTTCC---CCEEEEEEEEEEC--------CEEEEEEEEEE--SCSCT
T ss_pred HHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHhcccCCCCceEEEEEeccccCCCcccCCCCcceEEEEec--CCCch
Confidence 5566656666655222 34555555555555553333 3456664 56689877775555558999999999 32111
Q ss_pred ccCCCCCceeEEeecCCCcccchhhHHhhccCCccCHHHHHHHHHHHHHHHhhccCcCCceeeec----CCceEEEEEe-
Q psy6187 275 VDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQACDKCDYRESVKMIA----DTTEVKLRIL- 349 (667)
Q Consensus 275 ~~~~~~pg~~~l~l~~~~~~~~~~W~~~v~~~g~Lsp~KV~~~f~~lv~~ai~~~~~~~~v~~~~----~~~~v~l~v~- 349 (667)
.| .. -.=.-++...++.+.+.-....++-+..... ...++...+.
T Consensus 88 --------------~d-----q~-----------~~~~e~i~ei~~~L~~~~~~~~~~~~~e~~~~~~~~pral~F~l~~ 137 (200)
T d1px5a2 88 --------------ED-----QL-----------RRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSS 137 (200)
T ss_dssp --------------TH-----HH-----------HTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEE
T ss_pred --------------HH-----HH-----------HHHHHHHHHHHHHHHHHHhccccCceEEEeecCccCCcEEEEEEEE
Confidence 00 00 0122345556666666554444444444432 1235555554
Q ss_pred ----cEEEEEEEeeeeeCC
Q psy6187 350 ----GKYVVQITPAFKCAG 364 (667)
Q Consensus 350 ----~~~~vdlvP~v~~~~ 364 (667)
..+.||++||+..=|
T Consensus 138 ~~~~~~v~vDvLPA~daLg 156 (200)
T d1px5a2 138 PQLQQEVEFDVLPAFDALG 156 (200)
T ss_dssp TTTTEEEEEEEEEEECSSC
T ss_pred cCCCCcEEEEeeEhhhhhc
Confidence 689999999984443
No 2
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=39.99 E-value=46 Score=28.48 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=15.5
Q ss_pred eEEEEEe-cEEEEEEEeeeeeCC
Q psy6187 343 EVKLRIL-GKYVVQITPAFKCAG 364 (667)
Q Consensus 343 ~v~l~v~-~~~~vdlvP~v~~~~ 364 (667)
...+.+. ..+.||+||++....
T Consensus 97 hpyv~~~~~g~~vDvVP~~~v~~ 119 (142)
T d1r89a2 97 HPYVHGVVKGVEVDVVPCYKLKE 119 (142)
T ss_dssp SEEEEEEETTEEEEEEEEECCSS
T ss_pred CCEEEEEECCeEEEEEEEEEcCC
Confidence 3444444 569999999987664
No 3
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}
Probab=22.19 E-value=1.7e+02 Score=24.56 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=32.9
Q ss_pred CCCchHHHHHHHHHHHhcCC-----------------------CCCCCCcccHHHHHHHHHHHHHH
Q psy6187 575 NPVTNYHMKTLLLYECEKHP-----------------------NELEWDESCLGDRINGILLQLIS 617 (667)
Q Consensus 575 ~~lssYhLKT~lL~~~~~~p-----------------------~~~~W~~~~L~~rl~~lL~~L~~ 617 (667)
+.|+||.|-.+++|-|...+ ........+|++.|.+++.+...
T Consensus 26 G~lsSYal~lmvi~fLQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~Ll~~FF~~Y~~ 91 (183)
T d2b4va1 26 AMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAH 91 (183)
T ss_dssp CSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCCCCCCCHHHhccccccccccccccccCCCCCCHHHHHHHHHHHhcc
Confidence 36999999999999887531 01124456899999999999976
No 4
>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.74 E-value=1.9e+02 Score=22.59 Aligned_cols=36 Identities=6% Similarity=0.027 Sum_probs=30.8
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhChhh
Q psy6187 628 FLPHLDLFKGKSPSALENAAKQVWRLTRELLTNSRA 663 (667)
Q Consensus 628 fip~~NLf~~~~~~~l~~~~~~~~~~~r~~~~~~~~ 663 (667)
+.|+.-++...+++.+++-...+...++.|+.+|..
T Consensus 63 ~~~~~~~~~~~~~~~l~~Rr~~L~~yL~~l~~~~~l 98 (116)
T d1xtea_ 63 IPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPEL 98 (116)
T ss_dssp CCCSCCSSCTTCHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCcccccCccCHHHHHHHHHHHHHHHHHHHhCHhh
Confidence 556667778889999999999999999999998853
No 5
>d1dq3a2 d.50.3.1 (A:336-414) PI-Pfui intein middle domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=13.25 E-value=60 Score=24.35 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=31.3
Q ss_pred CceeEEeecCCCcccchhhHHhhccCCccCHHHHHHHHHHHHHHH
Q psy6187 281 PGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQA 325 (667)
Q Consensus 281 pg~~~l~l~~~~~~~~~~W~~~v~~~g~Lsp~KV~~~f~~lv~~a 325 (667)
-|...+..-..++-++.||++ .|..|-+.+..+++++-...
T Consensus 26 ngsqtlaii~~ekislgqwh~----rgrvskavlvkmlrkly~~t 66 (79)
T d1dq3a2 26 NGSQTIAIINDERISLGQWHT----RNRVSKAVLVKMLRKLYEAT 66 (79)
T ss_dssp ETTEEEEEETTEEEECTTHHH----HSCEEHHHHHHHHHHHHHHH
T ss_pred CCceEEEeecCceeehhhhhh----cCcchHHHHHHHHHHHHHhh
Confidence 345555555556788999997 58899999999999987653
No 6
>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}
Probab=12.12 E-value=49 Score=31.79 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=38.9
Q ss_pred CCCChhhhhhhhhcceEEEeccccccCCCCCccccCccccchH-HHHHHHhcCCchhhHHHHHHHHHHh
Q psy6187 43 AWPHPSIVAEIKAEGFDLLSKETFNITGKQSALEGDAWVMSFL-EVEKRLLLGGCRRKCLSVLKTLRNR 110 (667)
Q Consensus 43 ~WP~~~~~~~vk~~Gf~LVPk~~~~~~~~~~~~~~~~WrlSF~-~aE~~LL~~~crk~cL~ilK~L~~~ 110 (667)
++.+..+.+..+.+|+.++|.+.+...+ ......|+||+ ..|..+ .+.+..|+...++
T Consensus 340 ~~~~~~~~~~l~~~gV~v~pg~~f~~~~----~~~~~iRi~~~~~~~~~l------~~al~rl~~~l~~ 398 (403)
T d1wsta1 340 GIDTKLMMERAVAKGVAYVPGEAFFVHR----DKKNTMRLNFTYVPEETI------REGVRRLAETIKE 398 (403)
T ss_dssp TCCTTTTHHHHHHTTEECEEGGGGSTTC----CCCSEEEEECSSSCHHHH------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCEEEEechhhcCCC----CCCCEEEEEecCCCHHHH------HHHHHHHHHHHHH
Confidence 4556778889999999999998762211 12357899997 356666 5566555555444
No 7
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.84 E-value=64 Score=27.49 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=14.8
Q ss_pred EEEEEC-ceEEEEEEEEEEeCC
Q psy6187 8 VKLRIL-GKYVVQITPAFKCAG 28 (667)
Q Consensus 8 v~L~i~-~~isvDlVPa~~~~~ 28 (667)
..+.+. +.+.||+|||+.+..
T Consensus 98 pyv~~~~~g~~vDvVP~~~v~~ 119 (142)
T d1r89a2 98 PYVHGVVKGVEVDVVPCYKLKE 119 (142)
T ss_dssp EEEEEEETTEEEEEEEEECCSS
T ss_pred CEEEEEECCeEEEEEEEEEcCC
Confidence 334443 359999999998864
No 8
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}
Probab=10.06 E-value=1.4e+02 Score=24.70 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=20.0
Q ss_pred cCHHHHHHHHHHHHHHHhhccCc
Q psy6187 309 LSARKIRSRFQTLVAQACDKCDY 331 (667)
Q Consensus 309 Lsp~KV~~~f~~lv~~ai~~~~~ 331 (667)
..+..+.+.|..|+.+|+..++-
T Consensus 40 ~d~~~l~~vl~NLl~NAik~~~~ 62 (146)
T d1id0a_ 40 GEQNDFVEVMGNVLDNACKYCLE 62 (146)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCSS
T ss_pred ECHHHHHHHHHHHHHHHHHhhcC
Confidence 46899999999999999988753
No 9
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=9.99 E-value=90 Score=22.73 Aligned_cols=50 Identities=8% Similarity=0.066 Sum_probs=31.0
Q ss_pred CCChhhhHHHHHHHHHH-HHHHhhhccccccchHHHHHHHHHHHHHHHHHH
Q psy6187 179 GKTPSSLENAAKQSKIL-YQLNKYYGERVQTRKASIAKTIREVCKVVQDVL 228 (667)
Q Consensus 179 ~~~~~~Ld~lA~q~~i~-~~L~~~~~~~V~lr~~~vsq~v~ev~kIv~~ll 228 (667)
|+...+++.+|+.+|+. --+.+||-++=++-.+-+....+++...+.++-
T Consensus 21 G~~~~s~~~Ia~~agvs~~~iY~~F~sK~~L~~~~~~~~~~~~~~~~~~i~ 71 (74)
T d2g7sa1 21 GYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELE 71 (74)
T ss_dssp CGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCHHHHHHHHCcCcchHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888887665 456777777666655444444555555444443
No 10
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=9.69 E-value=1.3e+02 Score=21.72 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=22.8
Q ss_pred CCChhhhHHHHHHHHHH-HHHHhhhccccccch
Q psy6187 179 GKTPSSLENAAKQSKIL-YQLNKYYGERVQTRK 210 (667)
Q Consensus 179 ~~~~~~Ld~lA~q~~i~-~~L~~~~~~~V~lr~ 210 (667)
|+...++..+|+.+|+. --+.+||-++-.+=.
T Consensus 21 G~~~~s~~~Ia~~agvs~~t~Y~~F~~K~~L~~ 53 (74)
T d1v7ba1 21 SLETLSYDSLAEATGLSKSGLIYHFPSRHALLL 53 (74)
T ss_dssp CSTTCCHHHHHHHHCSCHHHHHHHCSSHHHHHH
T ss_pred CccccCHHHHHHHhCcCcchHhhhCCCHHHHHH
Confidence 56777888888886665 557788877765544
Done!