RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6187
(667 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.2 bits (189), Expect = 1e-14
Identities = 101/665 (15%), Positives = 178/665 (26%), Gaps = 225/665 (33%)
Query: 135 HPSENDWE----DHCVGDRINGIFLQ-LISCLQCKRCPNYFVPQL------DLFKGKTPS 183
H D+E + D I +F + CK + L + K
Sbjct: 3 HHHHMDFETGEHQYQYKD-ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 184 S--------LENAAKQSKILYQ-----LNKYYG---ERVQTRKASIAKTIREVCKVVQDV 227
S L + KQ +++ + L Y ++T + + R + +
Sbjct: 62 SGTLRLFWTLLS--KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 228 LREVEVQEPRFISSLTECNGRFEGLDVITPTEFEVVLYLNQMGELNFVDDGSLPGCAVLK 287
+ +V +S L + L + P + V++ + GS G +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLID--GVL-------GS--GKTWVA 167
Query: 288 L----SDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQA----CDKCDYRESVKMIA 339
L S + M + ++ S + Q L+ Q + D+ ++K+
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 340 DTTEVKLRILGKYVVQITPAFKC----AGVWPRSASQWPQPDIAWPHPSIVAEIKAEGFD 395
+ + +LR L ++ P C V + F+
Sbjct: 228 HSIQAELRRL----LKSKPYENCLLVLLNVQ---------------NAKAW-----NAFN 263
Query: 396 LLSKETFNITGKQSALEGDAWVMSFLEVEKR-------LLLGGCRRKCLSVL-KTLRNRH 447
L K T V FL + + S+L K L R
Sbjct: 264 LSCK-ILLTTR-------FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 448 LDLP-----GNPITNYCMKSLLLYECEKHPSENDWEDHCVEFITASGYLSARKMRSRFQT 502
DLP NP L I S R + +
Sbjct: 316 QDLPREVLTTNP--------RRL-----------------SIIAES----IRDGLATWDN 346
Query: 503 LVAQACDKLSKTRDA----------------------------------WV-MSFTDVES 527
CDKL+ ++ W + +DV
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM- 405
Query: 528 KLLIGGCRKKCL------SILKTLRDRHLELPGNPKCLSIL-KTLRDR--------HLEL 572
+++ K L ++ +LEL + L +++ D +L
Sbjct: 406 -VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 573 PGNPVTNY-------HMKTLLLYECEKHPNELEWDESCLGDRIN---------GILLQLI 616
+ Y H+K + E + D L +I G +L +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 617 SCLQ------CRRCPHY---------FL----------PHLDL----FKGKSPSALENAA 647
L+ C P Y FL + DL + + E A
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Query: 648 KQVWR 652
KQV R
Sbjct: 585 KQVQR 589
Score = 48.3 bits (114), Expect = 8e-06
Identities = 56/388 (14%), Positives = 109/388 (28%), Gaps = 86/388 (22%)
Query: 300 VEFITASGYLSARKIRSRFQTLVAQACDKCDYRESVKMIADTTEVKL------RILGKYV 353
++F T + I S F+ D D ++ K I E+ + G
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 354 VQITPAFKCAGVWPRSASQWPQPDIAWPHPSIVAEIKAEGFDLLSKETFNITGKQSALEG 413
+ T K + + + + + + +++ IK E S T ++ L
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKF----LMSPIKTEQRQP-SMMTRMYIEQRDRLYN 121
Query: 414 DAWVMSFLEVEKRLLLGGCRRKCLSVLKT-LRNRHLDLPGNPITNYCM----KSLLLYE- 467
D V + V R + L+ L L P + + K+ + +
Sbjct: 122 DNQVFAKYNV--------SRLQPYLKLRQALLE--LR-PAKNVLIDGVLGSGKTWVALDV 170
Query: 468 CEKHPSENDWEDHCVEFITASGYLSARKMRSRFQTLVAQACDKLSKTRDAWVMSFTDVES 527
C + + + + ++ S + Q L+ Q + D + S
Sbjct: 171 CLSYKVQCKMDFK-IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 528 KLLIGGCRKKCLSILKTLRDRHLELPGNPKCLSIL----------------KTL---RDR 568
++ R L+ CL +L K L R +
Sbjct: 230 --------------IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 569 HLELPGNPVTNYHMKTLLLYECEKHPNELEWDESCLGDRINGILLQLISCLQCRRCPHYF 628
+ + ++ + L + H L DE L L+ C
Sbjct: 276 QVT---DFLSAATTTHISL---DHHSMTLTPDEV----------KSL--LLKYLDCRPQD 317
Query: 629 LPHLDLFKGKSPSALENAAKQVWRLTRE 656
LP +P L + R+
Sbjct: 318 LPREV--LTTNPRRL----SIIAESIRD 339
Score = 42.5 bits (99), Expect = 4e-04
Identities = 71/445 (15%), Positives = 124/445 (27%), Gaps = 134/445 (30%)
Query: 89 KRLLLGGCRRKCLSVLKTLRN-RHLDLPGNPITNYCMKSLLLYECEKHPSENDWEDHCVG 147
+RLL CL VL ++N + + C K LL V
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWN----AFNLSC-KILLTT-----------RFKQVT 278
Query: 148 DRINGIFLQLISCLQCKRCPNYFVPQLDLFKGKTPSSLENAAKQSKILYQLNKYYGERVQ 207
D ++ + TP + K L L KY R Q
Sbjct: 279 DFLSAA-------------TTTHISLDHHSMTLTPD-------EVKSL--LLKYLDCRPQ 316
Query: 208 TRKASIAKTIREVCKVVQDVLREV--------EVQEPRFISSLTECNGRFEGLDVITPTE 259
+ T ++ + +R+ V + + + L+V+ P E
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS------LNVLEPAE 370
Query: 260 FEVVLYLNQMGELN-FVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRF 318
+ ++ L+ F +P +L L +W + I + + K+
Sbjct: 371 YR-KMFD----RLSVFPPSAHIPT-ILLSL---------IWFDVIKSDVMVVVNKLHKY- 414
Query: 319 QTLVAQACDKCDYRESVKMIADTTEVKL--------RILGKYVVQITPAFKCAGVWPRSA 370
+LV + + S+ I +VKL I+ Y I F + P
Sbjct: 415 -SLVEK--QPKESTISIPSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIP--- 466
Query: 371 SQWPQPD------IAWPHPSIVAEIKAEGFDLLSKETFNITGKQSALEGDAWVMSFLE-- 422
P D I H + E L + FLE
Sbjct: 467 ---PYLDQYFYSHIGH-H--LKNIEHPERMTLFRMVFLD--------------FRFLEQK 506
Query: 423 VEKRLLLGGCRRKCLSVLKTLRNRHLDLPGNPITNYCMKSLLLYECEKHPSENDWEDHCV 482
+ L+ L+ L+ Y K Y C+ P + +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLK------------FY--KP---YICDNDPKYERLVNAIL 549
Query: 483 EFITASGYLSARKMRSRFQTLVAQA 507
+F+ + S++ L+ A
Sbjct: 550 DFLPKIE---ENLICSKYTDLLRIA 571
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 2e-06
Identities = 91/615 (14%), Positives = 170/615 (27%), Gaps = 207/615 (33%)
Query: 37 WPQPDIAWPHPSIVAEIKAEGF-DLLSKETFNITGKQ---SALEGDAWVMSFLEVEKRLL 92
P ++ A E F +L + T + E V FL L+
Sbjct: 20 LLVPTASFFI----ASQLQEQFNKILPEPTEGFAADDEPTTPAE---LVGKFLGYVSSLV 72
Query: 93 LGGCRRKCLSVLKTLRNRHLD---LPGNPITNYCMKSLLLYECEKHPSENDWEDHCVGDR 149
+ VL + L GN I H + +
Sbjct: 73 EPSKVGQFDQVLNLCLT-EFENCYLEGNDI------------------------HALAAK 107
Query: 150 INGIFLQLISCLQCKRCPNYFVPQLDL---FKGKTPSSLENAAKQSKI-LY-----Q--L 198
+ + + + NY ++ F K+ S+L A + L Q
Sbjct: 108 LLQENDTTLVKTK-ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 199 NKYYGE---RVQTRKASIAKTIREVCKVVQDVLREVEVQEPRFISSLTECNGRFEGLDVI 255
+ Y+ E QT + I+ + + +++R E F +GL+++
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF----------TQGLNIL 216
Query: 256 ----TPTEFEVVLYLNQMGELNFVDDGSLPG------------CAVLKLSDGRKRSMSLW 299
P+ YL + + S P +L + G RS
Sbjct: 217 EWLENPSNTPDKDYLLSI----PI---SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 300 VEFITASGYLSARKIRSRFQTLVAQACDKCDYRESVKMIADTTEVKLRILGKYVVQITPA 359
+ G ++A +A+ + SV+ + +L
Sbjct: 270 A-TGHSQGLVTA--------VAIAETDSWESFFVSVRKA-------ITVL---------- 303
Query: 360 FKCAGVWPRSASQWPQPDIAWPHPSIVAEIKAEGFDL---------LSKET--------- 401
F GV R +P + PSI+ + + L++E
Sbjct: 304 FFI-GV--RCYEAYPNTSLP---PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 402 -------------------FNITGKQSALEGDAWVMSFLEVEKRLLLGGCR-----RKCL 437
++G +L G ++ + + L R RK
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYG--LNLTLRKAKAPSGLDQSRIPFSERK-- 413
Query: 438 SVLKTLRNRHLDLPGNPIT---NYCMKSLLLYECEKHPSENDWEDHC----------VEF 484
NR L P+ + S LL +++ +++ V +
Sbjct: 414 ---LKFSNRFL-----PVASPFH----SHLLVPASDLINKDLVKNNVSFNAKDIQIPV-Y 460
Query: 485 ITASGYLSARKMRSRFQTLVAQACDKLSKTRDA--WVMSFTDVESKLLI---GGCRKKCL 539
T G +R ++ + D + R W + + +L GG
Sbjct: 461 DTFDG----SDLRVLSGSISERIVDCI--IRLPVKWETTTQFKATHILDFGPGG-----A 509
Query: 540 SILKTLRDRHLELPG 554
S L L R+ + G
Sbjct: 510 SGLGVLTHRNKDGTG 524
Score = 44.3 bits (104), Expect = 1e-04
Identities = 46/274 (16%), Positives = 87/274 (31%), Gaps = 88/274 (32%)
Query: 297 SLWVEFITASGYLSARKIRSRFQTLVAQAC-DKCDYRESVKMIADTTEVKLRILGKYVVQ 355
+L + F G ++IR + ++ + D E + +
Sbjct: 1671 NLTIHFGGEKG----KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS----- 1721
Query: 356 ITPAFKCAGVWPRSASQWPQPDIAWPHPSIVAEIKAEGFDLLSK--------ETFNITGK 407
SA+Q+ QP + + ++K++G E +
Sbjct: 1722 --EKGLL------SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE-Y----- 1767
Query: 408 QSALEGDAWVMSFLEVEKRLLLGGCRRKCLSVLKTLRNR----HLDLPGNPI--TNYCMK 461
+AL A VMS E S+++ + R + +P + + +NY M
Sbjct: 1768 -AALASLADVMSI-E---------------SLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 462 SL-------------LLYECEKHPSENDWEDHCVE---F------ITASGYLSA-RKMRS 498
++ L Y E+ W VE + A+G L A + +
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKRTGWL---VEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 499 RFQTLVAQACD--KLSKTRDAWVMSFTDVESKLL 530
+ Q D +L K+ +S +VE L
Sbjct: 1868 VLNFIKLQKIDIIELQKS-----LSLEEVEGHLF 1896
Score = 38.5 bits (89), Expect = 0.010
Identities = 61/316 (19%), Positives = 102/316 (32%), Gaps = 102/316 (32%)
Query: 3 ADTTEVKLRILGKYVVQITPAFKCAGVWPRSASQWPQPDIAWPHPSIVAEIKAEGFD--- 59
D+ E + K IT F GV R +P + PSI+ +
Sbjct: 286 TDSWESFFVSVRKA---ITVLFFI-GV--RCYEAYPNTSLP---PSILEDSLENNEGVPS 336
Query: 60 -LLSKETFNITGKQSALEGDAWVMSFLEVEKRLL-----LGGCRRKCLSVLKTLRN--RH 111
+LS I+ ++ +V+ + L ++ +S L N ++
Sbjct: 337 PMLS-----ISN-----------LTQEQVQDYVNKTNSHLPAGKQVEIS----LVNGAKN 376
Query: 112 LDLPGNPITNYCMKSLLLYECEKHPSENDWEDHCVGDRI---------NGIFLQLISCLQ 162
L + G P + Y + L K PS D RI + FL ++
Sbjct: 377 LVVSGPPQSLYGLNLTL--RKAKAPSGLD------QSRIPFSERKLKFSNRFLP-VAS-- 425
Query: 163 CKRCP---NYFVPQLDLFKGK-TPSSLENAAKQSKI-LYQLNKYYGERVQTRKASIAKTI 217
P + VP DL +++ AK +I +Y G ++ SI++ I
Sbjct: 426 ----PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD--GSDLRVLSGSISERI 479
Query: 218 REVCKVVQDVLR-----EVEVQEPR-----F-------ISSLTECN--GRFEGLDVITPT 258
V ++R E Q F + LT N G G+ VI
Sbjct: 480 ------VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT--GVRVIVAG 531
Query: 259 EFEVVLYLNQMGELNF 274
++ N + F
Sbjct: 532 TLDI----NPDDDYGF 543
Score = 32.7 bits (74), Expect = 0.51
Identities = 35/199 (17%), Positives = 68/199 (34%), Gaps = 69/199 (34%)
Query: 39 QPDIAWPHPSIVAEIKAEGFDLLSK--------ETFNITGKQSALEGDAWVMSFLEVEKR 90
QP + + ++K++G E + +AL A VMS E
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE-Y------AALASLADVMSI-E---- 1780
Query: 91 LLLGGCRRKCLSVLKTLRNR----HLDLPGNPI--TNYCMKSLLLYECEKHPSENDWEDH 144
S+++ + R + +P + + +NY M ++ S+ +
Sbjct: 1781 -----------SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 145 CVGDRI---NGIFLQLISCLQCKRCPNYFVP--Q---------LDLFKGKTPSSLENAAK 190
+R+ G ++++ NY V Q LD +++ N K
Sbjct: 1830 V--ERVGKRTGWLVEIV---------NYNVENQQYVAAGDLRALDTV-----TNVLNFIK 1873
Query: 191 QSKI-LYQLNKYYG-ERVQ 207
KI + +L K E V+
Sbjct: 1874 LQKIDIIELQKSLSLEEVE 1892
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase,
isomerase; 2.30A {Abies grandis}
Length = 785
Score = 34.4 bits (78), Expect = 0.15
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 540 SILKTLRDRHLELPGNPKCLSILKTLRDRHLELPGNPVTNYHMKTLLLYECEKHPNELEW 599
++LK + L+LP + L + R+ L+ Y + T LLY E ++W
Sbjct: 157 AMLKEAKILGLDLPYDLPFLKQIIEKREAKLKR-IPTDVLYALPTTLLYSLEGLQEIVDW 215
Query: 600 DESCLGDRINGILLQLISCLQC 621
+ +G L +
Sbjct: 216 QKIMKLQSKDGSFLSSPASTAA 237
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 28.8 bits (65), Expect = 4.8
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 89 KRLLLGGCRRKCLSVLKTLRN-RHLDLPGNPITNYCMKSL 127
K L + + + L N L + G +T+ + +L
Sbjct: 69 KDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNL 108
Score = 28.8 bits (65), Expect = 4.8
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 425 KRLLLGGCRRKCLSVLKTLRN-RHLDLPGNPITNYCMKSL 463
K L + + + L N L + G +T+ + +L
Sbjct: 69 KDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNL 108
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 29.1 bits (65), Expect = 4.9
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 101 LSVLKTLRNRHLDLPGNPITNYCMKSLLLYECEKHPSENDWEDHCVGDRINGIFLQLISC 160
LS TL+ +L L N +++L + D HC I QL
Sbjct: 341 LSTHHTLK--NLTLSHNDWDCNSLRALFRNVARPAVDDADQ--HC------KIDYQLEHG 390
Query: 161 LQCKRCPNYFVPQL 174
L CK ++ +L
Sbjct: 391 LCCKESDKPYLDRL 404
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 27.8 bits (62), Expect = 7.3
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 89 KRLLLGGCRRKCLSVLKTLRN----RHLDLPGNPITNY 122
L L G + K +S L+ L+ + LDL +TN
Sbjct: 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135
Score = 27.8 bits (62), Expect = 7.3
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 425 KRLLLGGCRRKCLSVLKTLRN----RHLDLPGNPITNY 458
L L G + K +S L+ L+ + LDL +TN
Sbjct: 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 28.5 bits (64), Expect = 9.0
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 101 LSVLKTLRNRHLDLPGNPITNYCMKSLLLYECEKHPSENDWEDHCVGDRINGIFLQLISC 160
LS TL+ +L L N +++L + D HC D QL
Sbjct: 335 LSTHHTLK--NLTLSHNDWDCNSLRALFRNVARPAVDDADQ--HCKID------YQLEHG 384
Query: 161 LQCK 164
L CK
Sbjct: 385 LCCK 388
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II
terpene cyclase fold, class II diterpene CYCL DXXDD
motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB:
3pyb_A*
Length = 727
Score = 28.3 bits (62), Expect = 9.1
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 540 SILKTLRDRHLELPGNPKCLSILKTLRDRHLELPGNPVTNYHMKTLLLYECEKHPNELEW 599
S+L+ R ++++P + L + ++ L + + T LL+ E +L+W
Sbjct: 133 SLLEIARGINIDVPYDSPVLKDIYAKKELKLT-RIPKEIMHKIPTTLLHSLE-GMRDLDW 190
Query: 600 DESCLGDRINGILLQLISCLQCRRCPHYFLPHLD 633
++ +G L S F+ D
Sbjct: 191 EKLLKLQSQDGSFLFSPS-----STAFAFMQTRD 219
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 27.3 bits (61), Expect = 9.9
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 537 KCLSILKTLRDRHLELPGNPKCLSILKTLRDRHLELPGNPVTN 579
L+ L L ++ + L L+ L+ L+L VTN
Sbjct: 88 PNLTHL-NLSGNKIKDLSTIEPLKKLENLK--SLDLFNCEVTN 127
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.428
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,139,793
Number of extensions: 602880
Number of successful extensions: 1293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1274
Number of HSP's successfully gapped: 37
Length of query: 667
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 567
Effective length of database: 3,909,693
Effective search space: 2216795931
Effective search space used: 2216795931
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)