Query psy6188
Match_columns 74
No_of_seqs 110 out of 1011
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 19:57:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1.3E-30 2.9E-35 194.1 5.7 72 3-74 441-513 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 4.1E-30 8.9E-35 187.0 7.0 73 2-74 474-546 (821)
3 cd01383 MYSc_type_VIII Myosin 100.0 4.7E-30 1E-34 184.1 7.2 72 3-74 378-449 (677)
4 cd01387 MYSc_type_XV Myosin mo 100.0 7E-30 1.5E-34 183.2 7.4 72 3-74 374-445 (677)
5 cd01382 MYSc_type_VI Myosin mo 100.0 8.4E-30 1.8E-34 183.7 6.9 73 2-74 409-481 (717)
6 cd01381 MYSc_type_VII Myosin m 100.0 1.3E-29 2.7E-34 181.8 7.3 73 2-74 374-446 (671)
7 cd01384 MYSc_type_XI Myosin mo 100.0 1.2E-29 2.6E-34 181.9 7.2 73 2-74 379-451 (674)
8 cd01385 MYSc_type_IX Myosin mo 100.0 1.5E-29 3.3E-34 181.8 7.0 72 3-74 389-461 (692)
9 cd01379 MYSc_type_III Myosin m 100.0 1.7E-29 3.6E-34 180.8 6.9 72 3-74 386-457 (653)
10 cd01378 MYSc_type_I Myosin mot 100.0 2.2E-29 4.8E-34 180.6 7.1 72 3-74 379-451 (674)
11 cd01377 MYSc_type_II Myosin mo 100.0 6.6E-29 1.4E-33 178.6 7.3 73 2-74 386-459 (693)
12 cd01380 MYSc_type_V Myosin mot 100.0 1.4E-28 3.1E-33 176.8 6.8 72 2-74 380-451 (691)
13 smart00242 MYSc Myosin. Large 100.0 1.9E-28 4.1E-33 175.9 7.1 72 3-74 382-453 (677)
14 cd00124 MYSc Myosin motor doma 99.9 6.8E-28 1.5E-32 173.0 6.5 72 3-74 375-446 (679)
15 KOG0164|consensus 99.9 1.1E-27 2.4E-32 171.0 4.2 72 3-74 388-459 (1001)
16 PF00063 Myosin_head: Myosin h 99.9 6.6E-27 1.4E-31 167.8 6.8 72 3-74 377-449 (689)
17 cd01386 MYSc_type_XVIII Myosin 99.9 1.6E-26 3.4E-31 167.6 6.6 70 5-74 394-478 (767)
18 KOG0163|consensus 99.9 2.4E-25 5.2E-30 160.1 5.9 72 3-74 464-535 (1259)
19 KOG0161|consensus 99.9 4.1E-25 8.8E-30 169.2 4.2 71 3-74 461-532 (1930)
20 KOG0162|consensus 99.9 4.3E-24 9.2E-29 153.2 3.8 71 3-73 396-467 (1106)
21 KOG0160|consensus 99.9 1.9E-22 4.2E-27 146.8 5.4 72 2-74 380-451 (862)
22 KOG4229|consensus 99.8 5.6E-20 1.2E-24 136.4 4.5 72 3-74 440-511 (1062)
23 COG2153 ElaA Predicted acyltra 50.5 7.1 0.00015 24.2 0.6 29 15-43 117-145 (155)
24 PF12900 Pyridox_ox_2: Pyridox 26.5 35 0.00077 19.9 0.9 23 50-72 1-23 (143)
25 PF10875 DUF2670: Protein of u 26.2 46 0.001 20.0 1.3 15 52-66 3-17 (139)
26 PF09084 NMT1: NMT1/THI5 like; 22.7 74 0.0016 19.4 1.9 34 27-60 7-40 (216)
27 smart00394 RIIa RIIalpha, Regu 20.9 1.1E+02 0.0023 13.9 2.2 16 6-22 20-35 (38)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.96 E-value=1.3e-30 Score=194.10 Aligned_cols=72 Identities=53% Similarity=0.988 Sum_probs=69.6
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~-~p~Gll~iLdee~~ 74 (74)
|+.||||||||||+||+||++|++++|+.||++|..|||.|.+|+|.||++|+|||++ .|.|||++|||||+
T Consensus 441 FEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~ 513 (1463)
T COG5022 441 FEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECV 513 (1463)
T ss_pred hccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhc
Confidence 6899999999999999999999999999999999999999999999999999999996 48899999999996
No 2
>PTZ00014 myosin-A; Provisional
Probab=99.96 E-value=4.1e-30 Score=187.03 Aligned_cols=73 Identities=36% Similarity=0.522 Sum_probs=70.9
Q ss_pred CCCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 2 ASNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 2 ~~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
.|+.|||||||||||||+||++|++++|..|+++|.+|||.|..++|.||++|+|||+++|.|||++|||||+
T Consensus 474 ~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~ 546 (821)
T PTZ00014 474 VFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCL 546 (821)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhC
Confidence 3688999999999999999999999999999999999999999999999999999999999999999999995
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.96 E-value=4.7e-30 Score=184.10 Aligned_cols=72 Identities=54% Similarity=0.996 Sum_probs=70.4
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
|+.|||||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||+
T Consensus 378 f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~ 449 (677)
T cd01383 378 FDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEEST 449 (677)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHc
Confidence 678999999999999999999999999999999999999999999999999999999999999999999995
No 4
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.96 E-value=7e-30 Score=183.22 Aligned_cols=72 Identities=54% Similarity=0.905 Sum_probs=70.4
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
|+.|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||+
T Consensus 374 f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~ 445 (677)
T cd01387 374 LSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCC 445 (677)
T ss_pred CCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhc
Confidence 678999999999999999999999999999999999999999999999999999999999999999999996
No 5
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.96 E-value=8.4e-30 Score=183.68 Aligned_cols=73 Identities=41% Similarity=0.794 Sum_probs=70.9
Q ss_pred CCCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 2 ASNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 2 ~~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
.|+.|+|||||||||||+||++|++++|..++++|.+|||+|.+++|.||++|+|||+++|.|||++|||||+
T Consensus 409 ~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~ 481 (717)
T cd01382 409 YFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENR 481 (717)
T ss_pred cCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhc
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999996
No 6
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.96 E-value=1.3e-29 Score=181.80 Aligned_cols=73 Identities=51% Similarity=0.911 Sum_probs=70.8
Q ss_pred CCCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 2 ASNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 2 ~~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
.|+.|||||||||||||+||++|++++|..++++|..|||.|.+++|.||++|+|||+++|.|||++|||||+
T Consensus 374 ~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~ 446 (671)
T cd01381 374 NFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESK 446 (671)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhc
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999995
No 7
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.96 E-value=1.2e-29 Score=181.92 Aligned_cols=73 Identities=52% Similarity=0.860 Sum_probs=70.8
Q ss_pred CCCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 2 ASNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 2 ~~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
.|+.|+|||||||||||+||++|++++|..++++|..|||+|..++|.||++|+|||+++|.|||++|||||+
T Consensus 379 ~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~ 451 (674)
T cd01384 379 SFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACM 451 (674)
T ss_pred ccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHc
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999995
No 8
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.96 E-value=1.5e-29 Score=181.80 Aligned_cols=72 Identities=60% Similarity=1.094 Sum_probs=69.8
Q ss_pred CCC-CchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 3 SNL-HGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~-n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
|+. |+|||||||||||+||++|++++|..++++|..|||.|.+++|.||++|+|||+++|.|||++|||||+
T Consensus 389 f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~ 461 (692)
T cd01385 389 FGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESN 461 (692)
T ss_pred CCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhc
Confidence 456 999999999999999999999999999999999999999999999999999999999999999999996
No 9
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.96 E-value=1.7e-29 Score=180.76 Aligned_cols=72 Identities=50% Similarity=0.881 Sum_probs=70.4
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
|+.|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||+
T Consensus 386 f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~ 457 (653)
T cd01379 386 FKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESR 457 (653)
T ss_pred CCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhc
Confidence 678999999999999999999999999999999999999999999999999999999999999999999995
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.96 E-value=2.2e-29 Score=180.62 Aligned_cols=72 Identities=44% Similarity=0.836 Sum_probs=70.3
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~-~p~Gll~iLdee~~ 74 (74)
|+.|||||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||++ +|.|||++|||||+
T Consensus 379 f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~ 451 (674)
T cd01378 379 FQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCA 451 (674)
T ss_pred cccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHc
Confidence 6789999999999999999999999999999999999999999999999999999999 89999999999996
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.95 E-value=6.6e-29 Score=178.58 Aligned_cols=73 Identities=48% Similarity=0.916 Sum_probs=70.3
Q ss_pred CCCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCccchhchhhhC
Q psy6188 2 ASNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 2 ~~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
.|+.|+|||||||||||+||++|++++|+.++++|..|||.|..++| .||++|+|||+++|.|||++|||||+
T Consensus 386 ~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~ 459 (693)
T cd01377 386 IFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECV 459 (693)
T ss_pred ccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhc
Confidence 36789999999999999999999999999999999999999999999 59999999999999999999999995
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.95 E-value=1.4e-28 Score=176.81 Aligned_cols=72 Identities=54% Similarity=0.962 Sum_probs=69.2
Q ss_pred CCCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 2 ASNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 2 ~~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
.|+.|+|||||||||||+||++|++++|..++++|.+|||+|.+++|.||++|+|||++ |.|||++|||||+
T Consensus 380 ~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~ 451 (691)
T cd01380 380 TFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECR 451 (691)
T ss_pred ccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhc
Confidence 36789999999999999999999999999999999999999999999999999999996 6999999999995
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.95 E-value=1.9e-28 Score=175.88 Aligned_cols=72 Identities=57% Similarity=1.074 Sum_probs=70.3
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
|+.|+|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||+
T Consensus 382 f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~ 453 (677)
T smart00242 382 FEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECR 453 (677)
T ss_pred cccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhc
Confidence 578999999999999999999999999999999999999999999999999999999999999999999996
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.94 E-value=6.8e-28 Score=173.04 Aligned_cols=72 Identities=57% Similarity=1.012 Sum_probs=70.3
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
|+.|+|||||||||||+||++|++++|..++++|..|||.|..++|.||++|+|||+++|.|||++|||||+
T Consensus 375 f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~ 446 (679)
T cd00124 375 FEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECL 446 (679)
T ss_pred CCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999995
No 15
>KOG0164|consensus
Probab=99.94 E-value=1.1e-27 Score=171.05 Aligned_cols=72 Identities=44% Similarity=0.796 Sum_probs=70.2
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
|+.|||||||||||||+||+.|++.+++.||+||.+|||.|.+++|.+|..++||++.+..|||+||||||-
T Consensus 388 f~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl 459 (1001)
T KOG0164|consen 388 FQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACL 459 (1001)
T ss_pred ecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhc
Confidence 688999999999999999999999999999999999999999999999999999999999999999999993
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.94 E-value=6.6e-27 Score=167.80 Aligned_cols=72 Identities=57% Similarity=1.067 Sum_probs=67.6
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
+..|+|||||||||||+||++|++++|..++++|.+|||.|..++| .||++|+|||+++|.|||++|||||+
T Consensus 377 ~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~ 449 (689)
T PF00063_consen 377 FSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECL 449 (689)
T ss_dssp -SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCT
T ss_pred ccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhh
Confidence 5789999999999999999999999999999999999999999999 99999999999999999999999995
No 17
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.93 E-value=1.6e-26 Score=167.65 Aligned_cols=70 Identities=34% Similarity=0.551 Sum_probs=65.5
Q ss_pred CCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCC--------------Cccchhc
Q psy6188 5 LHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP--------------NGLLCVL 69 (74)
Q Consensus 5 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~~~li~~~p--------------~Gll~iL 69 (74)
.|+|||||||||||+||++|++++|..++++|..|||+|..+.+ .||++|++||+++| .|||++|
T Consensus 394 ~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lL 473 (767)
T cd01386 394 AATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLL 473 (767)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhh
Confidence 59999999999999999999999999999999999999987666 79999999999865 5999999
Q ss_pred hhhhC
Q psy6188 70 DDQAK 74 (74)
Q Consensus 70 dee~~ 74 (74)
||||+
T Consensus 474 DEec~ 478 (767)
T cd01386 474 DEEAL 478 (767)
T ss_pred hHhhc
Confidence 99996
No 18
>KOG0163|consensus
Probab=99.92 E-value=2.4e-25 Score=160.11 Aligned_cols=72 Identities=49% Similarity=0.884 Sum_probs=70.2
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
|.+|||||||||||||+||++|++++++.+|+.|..||+.++.|.|.||++|++||+.|..|||.+||||.|
T Consensus 464 f~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEak 535 (1259)
T KOG0163|consen 464 FAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAK 535 (1259)
T ss_pred eecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999999999999999999976
No 19
>KOG0161|consensus
Probab=99.91 E-value=4.1e-25 Score=169.22 Aligned_cols=71 Identities=49% Similarity=0.935 Sum_probs=68.4
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
|+.||||||||||+||+||++|++++|..++++|..|||.|.+|+| .|-++|++||++ |+||+++|||||.
T Consensus 461 fe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~ 532 (1930)
T KOG0161|consen 461 FEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECV 532 (1930)
T ss_pred cCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999 899999999995 8899999999994
No 20
>KOG0162|consensus
Probab=99.89 E-value=4.3e-24 Score=153.23 Aligned_cols=71 Identities=42% Similarity=0.807 Sum_probs=68.8
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCccchhchhhh
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQA 73 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~-~p~Gll~iLdee~ 73 (74)
|+.||||||||||.||+||+.|++.+++.||++|.+|||.|.+|.|+||.-++|||+. .|.||+++|||.|
T Consensus 396 Fe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~ 467 (1106)
T KOG0162|consen 396 FENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVC 467 (1106)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999997 5899999999987
No 21
>KOG0160|consensus
Probab=99.86 E-value=1.9e-22 Score=146.85 Aligned_cols=72 Identities=57% Similarity=0.984 Sum_probs=70.0
Q ss_pred CCCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 2 ASNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 2 ~~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
+|+.|+||||||||+||+||+.|.+|+|+.++++|..|+|.|..++|.||++|+++|+. |.|++++|||+|+
T Consensus 380 sF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~ 451 (862)
T KOG0160|consen 380 SFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECM 451 (862)
T ss_pred ccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhcc
Confidence 58899999999999999999999999999999999999999999999999999999997 9999999999995
No 22
>KOG4229|consensus
Probab=99.79 E-value=5.6e-20 Score=136.38 Aligned_cols=72 Identities=56% Similarity=1.012 Sum_probs=69.4
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
++.|+|||+|||+|||++|.+|.+++|..++++|..|+|.|..+.|.||..|+|+|..+|+||+.+||||++
T Consensus 440 f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~ 511 (1062)
T KOG4229|consen 440 FERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESR 511 (1062)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCc
Confidence 467999999999999999999999999999999999999999999999999999999999999999999874
No 23
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=50.53 E-value=7.1 Score=24.19 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHhHHHHHHhhhcCCcc
Q psy6188 15 YANEHLQYYFNQHVFQYEQEEYNKEGIRW 43 (74)
Q Consensus 15 ~~nE~l~~~~~~~~f~~~~~~y~~Egi~~ 43 (74)
-|.+.||.+|.+.-|....++|.+.||+-
T Consensus 117 ~AQahLq~fYa~~GFv~~~e~yledGIpH 145 (155)
T COG2153 117 GAQAHLQDFYASFGFVRVGEEYLEDGIPH 145 (155)
T ss_pred ehHHHHHHHHHHhCcEEcCchhhcCCCCc
Confidence 37788999999999999999999999963
No 24
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=26.54 E-value=35 Score=19.92 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=17.3
Q ss_pred ChHHHHHHHhcCCCccchhchhh
Q psy6188 50 DNTLCLQLVEGKPNGLLCVLDDQ 72 (74)
Q Consensus 50 ~n~~~~~li~~~p~Gll~iLdee 72 (74)
|...+.++|...+.|.|++.|+.
T Consensus 1 d~~e~~~iL~~~~~g~la~~~~~ 23 (143)
T PF12900_consen 1 DREEIWEILDRAPVGRLAFVDDG 23 (143)
T ss_dssp -HHHHHHHHHH-SEEEEEEEETT
T ss_pred CHHHHHHHHhhCCEEEEEEEeCC
Confidence 34678899999899999988864
No 25
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=26.20 E-value=46 Score=20.01 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=11.6
Q ss_pred HHHHHHHhcCCCccc
Q psy6188 52 TLCLQLVEGKPNGLL 66 (74)
Q Consensus 52 ~~~~~li~~~p~Gll 66 (74)
+..-+||..+|||++
T Consensus 3 qalrrlIaaNPMg~f 17 (139)
T PF10875_consen 3 QALRRLIAANPMGFF 17 (139)
T ss_pred HHHHHHHhhCCchhh
Confidence 345678999999976
No 26
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=22.73 E-value=74 Score=19.36 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=26.3
Q ss_pred HHhHHHHHHhhhcCCcccccccCChHHHHHHHhc
Q psy6188 27 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 60 (74)
Q Consensus 27 ~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~ 60 (74)
.....++..|+++|++...+.+.+...+++.+..
T Consensus 7 ~~vA~~~G~f~~~gl~ve~~~~~~~~~~~~~l~~ 40 (216)
T PF09084_consen 7 LYVAQEKGYFKEEGLDVEIVFFGGGGDVLEALAS 40 (216)
T ss_dssp HHHHHHTTHHHHTTEEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHcCCCccCeEEEEEEEecChhHHHHHHhc
Confidence 3455667788999999877777777888888875
No 27
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=20.94 E-value=1.1e+02 Score=13.92 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=10.0
Q ss_pred CchhHHHHHhhhHHHHH
Q psy6188 6 HGFEQLCINYANEHLQY 22 (74)
Q Consensus 6 n~~eql~in~~nE~l~~ 22 (74)
...-++|.+|- ++|..
T Consensus 20 ~d~~~f~~~yF-~kL~~ 35 (38)
T smart00394 20 SDLVQFAADYF-EKLEE 35 (38)
T ss_pred CcHHHHHHHHH-HHHHH
Confidence 34557788877 55543
Done!