Query psy6188
Match_columns 74
No_of_seqs 110 out of 1011
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 19:57:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v26_A Myosin VI; calmodulin-b 100.0 3.2E-31 1.1E-35 191.3 6.6 72 3-74 459-530 (784)
2 1lkx_A Myosin IE heavy chain; 100.0 2.7E-31 9.2E-36 189.9 5.8 73 2-74 392-464 (697)
3 4anj_A Unconventional myosin-V 100.0 1.1E-30 3.8E-35 192.5 6.6 73 2-74 462-534 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 3.5E-30 1.2E-34 186.1 7.5 72 2-74 443-514 (795)
5 1w9i_A Myosin II heavy chain; 100.0 6.1E-30 2.1E-34 184.3 7.5 73 2-74 460-534 (770)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 6.1E-30 2.1E-34 184.6 7.2 71 3-74 468-539 (783)
7 1kk8_A Myosin heavy chain, str 100.0 9.9E-30 3.4E-34 184.5 6.7 71 3-74 467-538 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 2.7E-29 9.3E-34 185.6 7.5 72 2-74 443-514 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 3E-29 1E-33 184.3 7.5 72 3-74 440-514 (995)
10 1g8x_A Myosin II heavy chain f 100.0 5.7E-29 1.9E-33 183.0 7.8 73 2-74 460-534 (1010)
11 1i84_S Smooth muscle myosin he 99.9 1.3E-28 4.3E-33 182.9 6.7 72 3-74 471-545 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 56.2 5.1 0.00017 19.8 1.2 25 50-74 25-49 (53)
13 1mof_A Moloney murine leukemia 49.9 6.9 0.00024 19.4 1.1 25 50-74 27-51 (55)
No 1
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.97 E-value=3.2e-31 Score=191.31 Aligned_cols=72 Identities=40% Similarity=0.788 Sum_probs=70.4
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
|+.|||||||||||||+||++|++++|+.|+++|.+|||+|.+++|.||++|+|||+++|+|||+||||||+
T Consensus 459 f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~ 530 (784)
T 2v26_A 459 FEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENR 530 (784)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhc
Confidence 679999999999999999999999999999999999999999999999999999999999999999999994
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.97 E-value=2.7e-31 Score=189.92 Aligned_cols=73 Identities=42% Similarity=0.703 Sum_probs=70.7
Q ss_pred CCCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 2 ASNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 2 ~~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
.|+.|||||||||||||+||++|++++|+.|+++|.+|||+|.+++|.||++|+|||+++|+|||+||||||+
T Consensus 392 ~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~ 464 (697)
T 1lkx_A 392 VFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACL 464 (697)
T ss_dssp CCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhC
Confidence 3688999999999999999999999999999999999999999999999999999999999999999999994
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.96 E-value=1.1e-30 Score=192.45 Aligned_cols=73 Identities=40% Similarity=0.767 Sum_probs=70.9
Q ss_pred CCCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 2 ASNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 2 ~~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
.|+.|||||||||||||+||++|++++|+.|+++|..|||+|.+++|.||++|+|||+++|+|||++|||||+
T Consensus 462 ~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~ 534 (1052)
T 4anj_A 462 YFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENR 534 (1052)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhc
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999994
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.96 E-value=3.5e-30 Score=186.10 Aligned_cols=72 Identities=54% Similarity=0.925 Sum_probs=69.4
Q ss_pred CCCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 2 ASNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 2 ~~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
.|+.|||||||||||||+||++|++++|+.|+++|.+|||+|.+++|.||++|+|||+++ .|||+||||||+
T Consensus 443 ~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~ 514 (795)
T 1w7j_A 443 TFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECK 514 (795)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHT
T ss_pred ccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhcc
Confidence 368899999999999999999999999999999999999999999999999999999986 999999999995
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.96 E-value=6.1e-30 Score=184.32 Aligned_cols=73 Identities=49% Similarity=0.950 Sum_probs=69.6
Q ss_pred CCCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcC-CCccchhchhhhC
Q psy6188 2 ASNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVLDDQAK 74 (74)
Q Consensus 2 ~~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~~~li~~~-p~Gll~iLdee~~ 74 (74)
.|+.|||||||||||||+||++|++++|+.|+++|..|||.|..++| .||++|+|||+++ |+|||+||||||+
T Consensus 460 ~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~ 534 (770)
T 1w9i_A 460 IFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSV 534 (770)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHS
T ss_pred ccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhC
Confidence 36899999999999999999999999999999999999999999999 5999999999984 9999999999995
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.96 E-value=6.1e-30 Score=184.58 Aligned_cols=71 Identities=48% Similarity=0.989 Sum_probs=67.6
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
|+.|||||||||||||+||++|++++|+.|+++|.+|||+|..++| .||++|+|||++ |+|||+||||||+
T Consensus 468 f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~ 539 (783)
T 4db1_A 468 FDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECM 539 (783)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhc
Confidence 6789999999999999999999999999999999999999999999 599999999996 8999999999995
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.96 E-value=9.9e-30 Score=184.47 Aligned_cols=71 Identities=51% Similarity=1.022 Sum_probs=68.7
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
|+.|||||||||||||+||++|++++|+.|+++|..|||+|.+++| .||++|+|||++ |.|||+||||||+
T Consensus 467 f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~ 538 (837)
T 1kk8_A 467 FDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECM 538 (837)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTT
T ss_pred cccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999 599999999996 9999999999995
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.96 E-value=2.7e-29 Score=185.60 Aligned_cols=72 Identities=54% Similarity=0.925 Sum_probs=69.3
Q ss_pred CCCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCccchhchhhhC
Q psy6188 2 ASNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 2 ~~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
.|+.|||||||||||||+||++|++++|..++++|..|||+|.+++|.||++|+|||+++ +|||+||||||+
T Consensus 443 ~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~ 514 (1080)
T 2dfs_A 443 TFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECK 514 (1080)
T ss_dssp CCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTT
T ss_pred ccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-Cceeeecccccc
Confidence 368999999999999999999999999999999999999999999999999999999985 999999999995
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.96 E-value=3e-29 Score=184.32 Aligned_cols=72 Identities=50% Similarity=0.932 Sum_probs=69.3
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhc--CCCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~~~li~~--~p~Gll~iLdee~~ 74 (74)
|+.|||||||||||||+||++|++++|+.|+++|..|||+|.+++| .||++|+|||++ +|+|||+||||||+
T Consensus 440 f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~ 514 (995)
T 2ycu_A 440 FQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECW 514 (995)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSS
T ss_pred cccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhc
Confidence 6889999999999999999999999999999999999999999999 699999999997 49999999999995
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.95 E-value=5.7e-29 Score=183.04 Aligned_cols=73 Identities=49% Similarity=0.939 Sum_probs=69.7
Q ss_pred CCCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhc-CCCccchhchhhhC
Q psy6188 2 ASNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQAK 74 (74)
Q Consensus 2 ~~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~~~li~~-~p~Gll~iLdee~~ 74 (74)
.|+.|||||||||||||+||++|++++|+.|+++|..|||+|.+++| .||++|+|||++ +|+|||+||||||+
T Consensus 460 ~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~ 534 (1010)
T 1g8x_A 460 IFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSV 534 (1010)
T ss_dssp CCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTT
T ss_pred cCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhC
Confidence 36899999999999999999999999999999999999999999999 599999999998 49999999999995
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.95 E-value=1.3e-28 Score=182.87 Aligned_cols=72 Identities=49% Similarity=0.926 Sum_probs=67.9
Q ss_pred CCCCchhHHHHHhhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcC--CCccchhchhhhC
Q psy6188 3 SNLHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCVLDDQAK 74 (74)
Q Consensus 3 ~~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~~~li~~~--p~Gll~iLdee~~ 74 (74)
|+.|||||||||||||+||++|++++|..++++|..|||.|.+++| .||++|+|||+++ |+|||+||||||+
T Consensus 471 f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~ 545 (1184)
T 1i84_S 471 FEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECW 545 (1184)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTS
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhC
Confidence 6789999999999999999999999999999999999999999999 6999999999962 3499999999995
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=56.20 E-value=5.1 Score=19.77 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.2
Q ss_pred ChHHHHHHHhcCCCccchhchhhhC
Q psy6188 50 DNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 50 ~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
.|.-.+|++..+..|+=..|.|+|.
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC 49 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCC 49 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchh
Confidence 4677899999888999999999884
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=49.88 E-value=6.9 Score=19.42 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.1
Q ss_pred ChHHHHHHHhcCCCccchhchhhhC
Q psy6188 50 DNTLCLQLVEGKPNGLLCVLDDQAK 74 (74)
Q Consensus 50 ~n~~~~~li~~~p~Gll~iLdee~~ 74 (74)
.|.-.+|++..+..|+=..|.|+|.
T Consensus 27 QNRraLD~L~a~~GG~C~~l~e~CC 51 (55)
T 1mof_A 27 QNRRGLDLLFLKEGGLCAALKEECA 51 (55)
T ss_dssp HHHHHHHHHTGGGTCHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhCCccHHHcCchh
Confidence 4677899999888999999999883
Done!