RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6188
         (74 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 71.3 bits (174), Expect = 5e-17
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 6   HGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 65
           + FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL
Sbjct: 388 NSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGL 447

Query: 66  LCVLDDQ 72
           + +LD+ 
Sbjct: 448 ISLLDEA 454


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 67.8 bits (165), Expect = 8e-16
 Identities = 31/67 (46%), Positives = 43/67 (64%)

Query: 6   HGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 65
           + FEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+
Sbjct: 424 NSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGI 483

Query: 66  LCVLDDQ 72
             +L+++
Sbjct: 484 FSILEEE 490


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 65.9 bits (160), Expect = 3e-15
 Identities = 33/67 (49%), Positives = 44/67 (65%)

Query: 6   HGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 65
           + FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+
Sbjct: 422 NSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGI 481

Query: 66  LCVLDDQ 72
           L +L+++
Sbjct: 482 LSILEEE 488


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 65.5 bits (159), Expect = 5e-15
 Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 6   HGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KP 62
           + FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E    P
Sbjct: 396 NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNP 455

Query: 63  NGLLCVLDDQ 72
            G+L +LD++
Sbjct: 456 PGVLALLDEE 465


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 63.6 bits (154), Expect = 2e-14
 Identities = 38/68 (55%), Positives = 48/68 (70%), Gaps = 1/68 (1%)

Query: 5   LHGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG 64
           ++ FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  G
Sbjct: 384 INSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MG 442

Query: 65  LLCVLDDQ 72
           +L +LD++
Sbjct: 443 VLDLLDEE 450


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 60.9 bits (147), Expect = 2e-13
 Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 2/69 (2%)

Query: 6   HGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPN 63
           + FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G +P 
Sbjct: 417 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 476

Query: 64  GLLCVLDDQ 72
           G+L +LD+Q
Sbjct: 477 GILALLDEQ 485


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 24.9 bits (54), Expect = 1.00
 Identities = 8/39 (20%), Positives = 10/39 (25%)

Query: 13  INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 51
           I Y       +  Q  F+            W H E  D 
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415


>d1e6yc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
          {Archaeon Methanosarcina barkeri [TaxId: 2208]}
          Length = 247

 Score = 22.8 bits (49), Expect = 6.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 38 KEGIRWRHIEFSD 50
            G R R+I+F+D
Sbjct: 77 AAGDRVRYIQFAD 89


>d1e6vc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
          {Archaeon Methanopyrus kandleri [TaxId: 2320]}
          Length = 248

 Score = 22.4 bits (48), Expect = 6.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 38 KEGIRWRHIEFSD 50
          K G R R+I+F+D
Sbjct: 75 KAGDRIRYIQFTD 87


>d1hbnc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
          {Archaeon Methanobacterium thermoautotrophicum [TaxId:
          145262]}
          Length = 247

 Score = 22.4 bits (48), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 38 KEGIRWRHIEFSD 50
          K G R R+I+F+D
Sbjct: 76 KAGDRVRYIQFTD 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 282,648
Number of extensions: 10821
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 15
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)