Query psy6189
Match_columns 539
No_of_seqs 281 out of 1185
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 19:58:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1697|consensus 100.0 1.3E-70 2.8E-75 539.1 20.4 255 185-539 21-275 (275)
2 PRK00132 rpsI 30S ribosomal pr 100.0 8.2E-47 1.8E-51 343.5 12.6 123 415-539 8-130 (130)
3 CHL00079 rps9 ribosomal protei 100.0 1.1E-46 2.3E-51 342.7 12.9 123 415-539 7-130 (130)
4 COG0103 RpsI Ribosomal protein 100.0 1.9E-46 4.2E-51 338.7 12.6 124 414-539 7-130 (130)
5 PF00380 Ribosomal_S9: Ribosom 100.0 4.7E-46 1E-50 335.0 8.2 121 417-539 1-121 (121)
6 TIGR03627 arch_S9P archaeal ri 100.0 5.7E-45 1.2E-49 331.5 12.5 123 415-539 4-130 (130)
7 PRK00474 rps9p 30S ribosomal p 100.0 9.5E-45 2E-49 331.6 12.8 124 414-539 6-134 (134)
8 PTZ00086 40S ribosomal protein 100.0 4.4E-44 9.6E-49 331.4 11.9 123 415-539 13-147 (147)
9 PLN00210 40S ribosomal protein 100.0 5.6E-44 1.2E-48 328.9 12.2 124 414-539 6-141 (141)
10 KOG1753|consensus 99.9 1E-27 2.2E-32 216.7 9.1 123 415-539 11-145 (145)
11 KOG1697|consensus 99.6 8.3E-16 1.8E-20 152.8 5.7 82 39-144 13-94 (275)
12 TIGR02653 Lon_rel_chp conserve 65.8 19 0.0004 42.0 7.6 87 404-497 492-591 (675)
13 PRK10787 DNA-binding ATP-depen 64.9 10 0.00023 44.7 5.6 66 425-497 614-690 (784)
14 COG4988 CydD ABC-type transpor 56.7 9.5 0.00021 43.4 3.3 29 468-497 445-473 (559)
15 COG1750 Archaeal serine protea 49.5 30 0.00064 39.7 5.6 73 423-498 53-132 (579)
16 PF02601 Exonuc_VII_L: Exonucl 47.8 23 0.00049 36.7 4.2 48 451-498 55-106 (319)
17 TIGR01193 bacteriocin_ABC ABC- 47.3 22 0.00048 40.7 4.4 29 467-497 599-628 (708)
18 TIGR03796 NHPM_micro_ABC1 NHPM 44.6 28 0.00061 39.9 4.6 30 467-497 603-632 (710)
19 TIGR02868 CydC thiol reductant 43.6 31 0.00067 37.9 4.6 79 417-497 371-487 (529)
20 COG1132 MdlB ABC-type multidru 43.4 32 0.0007 38.3 4.8 80 417-497 365-482 (567)
21 TIGR00957 MRP_assoc_pro multi 42.6 25 0.00055 44.4 4.2 66 430-497 1337-1438(1522)
22 PTZ00265 multidrug resistance 42.6 28 0.00061 43.9 4.5 67 430-497 1273-1375(1466)
23 TIGR02903 spore_lon_C ATP-depe 42.3 76 0.0017 36.5 7.6 85 406-498 445-539 (615)
24 TIGR03375 type_I_sec_LssB type 41.4 28 0.0006 39.8 4.0 30 467-497 589-618 (694)
25 TIGR00958 3a01208 Conjugate Tr 39.9 37 0.00079 39.3 4.6 29 468-497 606-634 (711)
26 cd06405 PB1_Mekk2_3 The PB1 do 39.2 19 0.00041 31.2 1.6 16 238-253 51-66 (79)
27 COG4608 AppF ABC-type oligopep 39.0 17 0.00037 37.9 1.7 73 416-497 48-126 (268)
28 PRK11174 cysteine/glutathione 38.5 34 0.00074 38.2 4.0 79 417-497 386-502 (588)
29 PLN03232 ABC transporter C fam 36.7 41 0.00089 42.5 4.7 66 430-497 1287-1388(1495)
30 PF02120 Flg_hook: Flagellar h 36.7 12 0.00026 31.0 0.1 55 464-519 22-76 (85)
31 cd06405 PB1_Mekk2_3 The PB1 do 36.1 22 0.00048 30.8 1.6 14 100-113 51-64 (79)
32 KOG3288|consensus 35.5 24 0.00052 36.9 2.0 33 466-498 272-304 (307)
33 KOG0058|consensus 35.5 38 0.00083 39.8 3.8 78 417-497 504-621 (716)
34 PRK10790 putative multidrug tr 33.6 54 0.0012 36.7 4.6 80 417-497 377-493 (592)
35 COG1135 AbcC ABC-type metal io 33.4 18 0.0004 38.8 0.9 29 416-444 41-71 (339)
36 cd08643 DNA_pol_A_pol_I_B Poly 32.7 34 0.00075 37.8 2.8 34 141-175 136-174 (429)
37 COG3842 PotA ABC-type spermidi 32.4 16 0.00035 39.4 0.2 48 416-463 40-105 (352)
38 COG1126 GlnQ ABC-type polar am 32.3 38 0.00082 34.9 2.8 87 406-497 26-153 (240)
39 PF13690 CheX: Chemotaxis phos 31.6 36 0.00078 29.1 2.2 23 224-247 24-46 (94)
40 TIGR03797 NHPM_micro_ABC2 NHPM 30.9 49 0.0011 37.9 3.7 28 468-497 577-605 (686)
41 COG1136 SalX ABC-type antimicr 30.2 33 0.00071 34.9 2.0 37 430-466 56-114 (226)
42 COG2274 SunT ABC-type bacterio 27.9 80 0.0017 37.2 4.9 79 416-497 508-626 (709)
43 cd03527 RuBisCO_small Ribulose 27.5 1E+02 0.0022 27.8 4.4 57 238-314 12-69 (99)
44 TIGR00763 lon ATP-dependent pr 26.4 1E+02 0.0022 36.3 5.4 61 431-497 623-694 (775)
45 TIGR00416 sms DNA repair prote 26.3 1.4E+02 0.003 33.1 6.2 56 434-498 326-384 (454)
46 PF13690 CheX: Chemotaxis phos 26.2 52 0.0011 28.1 2.3 23 87-110 25-47 (94)
47 PF13541 ChlI: Subunit ChlI of 25.4 1.4E+02 0.0031 27.4 5.1 65 431-498 7-72 (121)
48 TIGR01842 type_I_sec_PrtD type 24.7 77 0.0017 35.2 3.8 28 417-444 354-383 (544)
49 PRK00286 xseA exodeoxyribonucl 23.5 68 0.0015 34.9 3.1 46 452-498 177-223 (438)
50 TIGR03140 AhpF alkyl hydropero 23.2 76 0.0017 35.2 3.4 24 468-491 210-233 (515)
51 COG1124 DppF ABC-type dipeptid 22.8 16 0.00034 37.9 -1.8 76 416-497 42-158 (252)
52 cd03247 ABCC_cytochrome_bd The 22.1 1E+02 0.0022 28.9 3.5 41 406-446 26-69 (178)
53 PLN03130 ABC transporter C fam 21.6 99 0.0022 39.7 4.3 66 430-497 1290-1391(1622)
54 PRK05589 peptide chain release 21.3 79 0.0017 34.0 2.9 28 416-443 169-198 (325)
55 TIGR01846 type_I_sec_HlyB type 20.9 1.4E+02 0.0031 34.2 5.2 29 468-497 582-610 (694)
56 PF03755 YicC_N: YicC-like fam 20.9 1.3E+02 0.0029 28.4 4.1 49 466-514 58-117 (159)
57 TIGR02857 CydD thiol reductant 20.7 1.1E+02 0.0024 33.7 4.0 29 468-497 447-475 (529)
58 COG3839 MalK ABC-type sugar tr 20.3 88 0.0019 33.7 3.0 58 406-463 27-103 (338)
No 1
>KOG1697|consensus
Probab=100.00 E-value=1.3e-70 Score=539.07 Aligned_cols=255 Identities=45% Similarity=0.744 Sum_probs=236.9
Q ss_pred CcccccchhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHhhhCCCCCCCCHHHHHHHHHhhcCCCCCCccCCCCC
Q psy6189 185 PHHDMFDRTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYM 264 (539)
Q Consensus 185 ~~~~~~~~~~~skAm~~yl~~~~~~~~fm~~q~~ey~iGKRhLAnMMGeDpe~fTqedIdrAI~YLfPSgL~~k~ARP~M 264 (539)
+-.+-++..++.|||..|+++..+||+||++|++|||+|| |||||||+||.|||||||||+.|||.|
T Consensus 21 ~~~~~~~~~~i~k~~~~y~k~~~~~d~~~~~~~~efe~gK-------------~~qedid~ai~~l~psg~~d~~arp~m 87 (275)
T KOG1697|consen 21 ASDSDTSVRKIPKALETYLKRSTQHDAFMKKQRLEFEIGK-------------LTQEDIDRAISYLFPSGLFDPNARPVM 87 (275)
T ss_pred cccccchhhhhhhhhhhhccCcchHHHHHHHHHHHHhhcc-------------CcchhhHHHHHHhccccccCccccccc
Confidence 3334567789999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCCccCCCCcccccCCCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhhhhhhcccCCCCccH
Q psy6189 265 KHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNKMEDEDLRNPKQTQASEASRELYLTNTEWMSQ 344 (539)
Q Consensus 265 K~PeeifP~~k~~q~de~GRP~h~lFYTGkP~YydlLhdi~~kL~~L~k~ed~l~~k~l~p~~~~~~~~~~l~~s~Wlsk 344 (539)
+.||||+ +||.+||+++.+.+.+.++++
T Consensus 88 -----------~~~~~et-------------~~~~ll~di~~~~~~~~~~~~---------------------------- 115 (275)
T KOG1697|consen 88 -----------AFQFDET-------------KYYQLLHDIGVLTNKLAKLYS---------------------------- 115 (275)
T ss_pred -----------cccCCcc-------------hHHHHHHHHHhhhhhhhhhhh----------------------------
Confidence 8999997 999999999998887777742
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCeeeecccccCcceEE
Q psy6189 345 EALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARA 424 (539)
Q Consensus 345 eele~~l~E~L~~~~Y~~~i~lL~RL~~ip~~~~~~e~l~~frk~~~~~s~~~~~~p~qlDe~Gra~vs~~~GkRKtA~A 424 (539)
..+++|.+.|++.++++|+++|++++...++ +++.+ + ++|+||+|+|
T Consensus 116 --------------------~s~~~l~s~p~~~~e~~f~~~~~k~~~~~g~----~~~~~------~---~~g~rK~a~A 162 (275)
T KOG1697|consen 116 --------------------ISIEHLLSSPYSAIEEKFLKRFRKPLDESGK----PEVRI------I---AVGRRKCARA 162 (275)
T ss_pred --------------------hHHHHHhhCchhHHHHHHHHHHHhcccccCC----Cceee------e---eccceeccee
Confidence 6788999999999999999999999866553 22223 2 6789999999
Q ss_pred EEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHHHHHccCChhhH
Q psy6189 425 DVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMR 504 (539)
Q Consensus 425 ~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIArALv~~v~p~~k 504 (539)
+|+| .+|+|+|.|||+++.+||+..++|+++|+||.+++.+|+|||+|+|+|||.||||+||+||||+||+.| +|+++
T Consensus 163 ~V~v-~~GtGk~~vNg~~~~~yF~~~~~Re~ll~Pl~~~~~lg~~dv~atv~GGG~sgqagAI~~gia~aL~~~-~p~~~ 240 (275)
T KOG1697|consen 163 TVKV-QPGTGKFDVNGRDLDVYFQHLQHREQLLYPLAVSESLGKYDVTATVSGGGPSGQAGAIRLGIAKALASF-EPDLI 240 (275)
T ss_pred EEEE-ecCceeEEecchhHHhHhccchhHHHHhhhHHHhccccceeEEEEecCCCccchhHHHHHHHHHHHHhc-CHHHh
Confidence 9999 599999999999998899999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189 505 ERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 505 ~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
+.||++||||+|+|+|||||+|++||||+|||+||
T Consensus 241 ~~lr~aGlLTrD~R~vERKK~gq~kARkk~tW~KR 275 (275)
T KOG1697|consen 241 EPLRLAGLLTRDPRVVERKKPGQPKARKKPTWKKR 275 (275)
T ss_pred hHHHhcCccccchHhhhhccCCccccccccccccC
Confidence 99999999999999999999999999999999998
No 2
>PRK00132 rpsI 30S ribosomal protein S9; Reviewed
Probab=100.00 E-value=8.2e-47 Score=343.55 Aligned_cols=123 Identities=44% Similarity=0.666 Sum_probs=121.2
Q ss_pred ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHHH
Q psy6189 415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWG 494 (539)
Q Consensus 415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIArA 494 (539)
++||||+|+|+||+. +|+|+|+|||+|+.+||++..+|++|++||.+++.+++|||+|+|+|||.||||+|||||||||
T Consensus 8 ~~GrRK~a~A~v~l~-~G~G~i~INg~~~~~yf~~~~~r~~i~~Pl~~~~~~~~~Di~i~V~GGG~sgQa~Air~aiara 86 (130)
T PRK00132 8 GTGRRKTAVARVRLK-PGSGKITVNGRDLEEYFPRETLRMVVRQPLELTETEGKFDVYVTVKGGGISGQAGAIRHGIARA 86 (130)
T ss_pred EEeeCCCeEEEEEEE-cCccEEEECCEeHHHHcCCHHHHHHHHHHHHHhCccCceeEEEEEEcCCHHHHHHHHHHHHHHH
Confidence 689999999999996 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCChhhHHHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189 495 LRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 495 Lv~~v~p~~k~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
||.| +|++++.|+.+||||+|+|+|||||||++||||++|||||
T Consensus 87 Lv~~-~~~~r~~Lk~~glLtrD~R~~ErKK~G~~kARk~~q~skR 130 (130)
T PRK00132 87 LLEY-DPDLRPALKKAGFLTRDARMVERKKYGLKKARRAPQFSKR 130 (130)
T ss_pred HHHH-CHHHHHHHHHCCCcccCchhhccCcCCCcccccccccccC
Confidence 9999 9999999999999999999999999999999999999998
No 3
>CHL00079 rps9 ribosomal protein S9
Probab=100.00 E-value=1.1e-46 Score=342.74 Aligned_cols=123 Identities=41% Similarity=0.576 Sum_probs=119.7
Q ss_pred ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCC-hHHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHH
Q psy6189 415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPD-ENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISW 493 (539)
Q Consensus 415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~-~~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIAr 493 (539)
++|+||+|+|+||+. +|+|+|+|||+++.+||+. ...+++|++||.+++.+++|||+|+|+|||.||||+||||||||
T Consensus 7 ~~GrRKta~Arv~l~-~G~G~i~INg~~~~~yf~~~~~~~~~v~~Pl~~~~~~~~~Di~i~V~GGG~sgQa~Air~aIar 85 (130)
T CHL00079 7 GTGRRKTAVAQVRLV-PGSGEIIINGKPAEEYLQYNPNYLNAIKAPLKLLGLENKYDIIVKVKGGGLTGQAEAIRLGLAR 85 (130)
T ss_pred EEeeCCCeEEEEEEE-cCCcEEEECCCcHHHHCCcCHHHHHHHHHHHHHhCcCCceeEEEEEEcCChhHHHHHHHHHHHH
Confidence 689999999999996 9999999999999999985 66789999999999999999999999999999999999999999
Q ss_pred HHHccCChhhHHHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189 494 GLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 494 ALv~~v~p~~k~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
||++| +|++++.|+++||||+|+|+|||||||++||||+||||||
T Consensus 86 aLv~~-~~~~k~~Lk~~glLtrD~R~~ERKK~G~~kARk~~Q~SkR 130 (130)
T CHL00079 86 ALCKI-NPENRKSLKKEGFLTRDARIKERKKYGLKKARKAPQFSKR 130 (130)
T ss_pred HHHHH-CHHHHHHHHHcCCcccCCcccccCcCCCcccccccccCCC
Confidence 99999 9999999999999999999999999999999999999998
No 4
>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-46 Score=338.68 Aligned_cols=124 Identities=48% Similarity=0.713 Sum_probs=121.7
Q ss_pred cccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHH
Q psy6189 414 TKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISW 493 (539)
Q Consensus 414 ~~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIAr 493 (539)
.++||||+|+|+|+|+ +|+|+|+|||+|+.+||++...|.+|++||.+++..++|||+|+|+|||.||||+||||||||
T Consensus 7 ~~tGkRK~AvArv~l~-~g~G~i~vNg~~~e~yf~~e~~r~~i~~Pl~l~~~~~~~Di~v~V~GGG~~GQA~AiR~gIaR 85 (130)
T COG0103 7 YTTGKRKSAVARVRLV-PGKGKITVNGRPLELYFPRETLRMKIMQPLLLTGTVGKFDIDVTVKGGGISGQAGAIRHGIAR 85 (130)
T ss_pred eeeccccceEEEEEEE-cCCcEEEECCcCHHHhcchHHHHHHHhhhHHHhCccccccEEEEEecCCchHHHHHHHHHHHH
Confidence 4789999999999997 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCChhhHHHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189 494 GLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 494 ALv~~v~p~~k~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
||+.| +|++++.|+++||||+|+|+|||||+|++|||+++|||||
T Consensus 86 AL~~~-~~~lr~~lk~~g~LtrD~R~~ErKK~G~~kARr~~Q~SkR 130 (130)
T COG0103 86 ALVEY-DPELRPALKKAGLLTRDPRRVERKKYGLKKARRRPQFSKR 130 (130)
T ss_pred HHHHH-CHHHHHHHHHCCCcccCccccccccccccccccccccccC
Confidence 99999 9999999999999999999999999999999999999998
No 5
>PF00380 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: IPR000754 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S9 is one of the proteins from the small ribosomal subunit. It belongs to the S9P family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial; algal chloroplast; cyanelle and archaeal S9 proteins; and mammalian; plant; and yeast mitochondrial ribosomal S9 proteins. These proteins adopt a beta-alpha-beta fold similar to that found in numerous RNA/DNA-binding proteins, as well as in kinases from the GHMP kinase family [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V46_I 3T1H_I 3MR8_I 3F1G_I 3D5C_I 3D5A_I 2WDG_I 3MS0_I 2WDM_I 2J02_I ....
Probab=100.00 E-value=4.7e-46 Score=335.02 Aligned_cols=121 Identities=51% Similarity=0.774 Sum_probs=114.3
Q ss_pred ccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHHHHH
Q psy6189 417 CPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLR 496 (539)
Q Consensus 417 GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIArALv 496 (539)
|+||||+|+|||. +|+|+|.|||+|+.+||++..+|++|++||.+++.+++|||+|+|+|||.||||+||||||||||+
T Consensus 1 GkRK~a~A~v~l~-~G~G~i~INg~~l~~yf~~~~~r~~il~Pl~~~~~~~~~di~~~V~GGG~~gQa~Air~aiaraL~ 79 (121)
T PF00380_consen 1 GKRKTAIARVWLK-PGSGKIRINGKPLEEYFPNPYLREKILEPLELTGTLGKFDIFANVKGGGISGQAGAIRLAIARALV 79 (121)
T ss_dssp EEETTEEEEEEEE-ESSSEEEETTSEHHHHSSSTTTGCCTTHHHHCTTTSTSEEEEEEEESSSHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEE-eCceEEEECCEEHHHhcCcHhHHHHHHHHHHHhCcCCeeeEEEEEecCcEeeehHHHHHHHHHHHH
Confidence 8999999999996 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189 497 NFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 497 ~~v~p~~k~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
.| +|+.++.|++.||||+|+|+|||||||++||||+||||||
T Consensus 80 ~~-~~~~~~~Lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR 121 (121)
T PF00380_consen 80 KF-NPSLKPELKKAGLLTRDPRRVERKKPGRKKARKKPQWSKR 121 (121)
T ss_dssp HH-HTTCHHHHCTTTTTS-BS-S-SS-CTTSSSSSBSSCTST-
T ss_pred HH-hHHHHHHHhhCCceeecchhccccCCCCCCcccccccccC
Confidence 99 8999999999999999999999999999999999999998
No 6
>TIGR03627 arch_S9P archaeal ribosomal protein S9P. This model describes exclusively the archaeal ribosomal protein S9P. Homologous eukaryotic and bacterial ribosomal proteins are excluded from this model.
Probab=100.00 E-value=5.7e-45 Score=331.49 Aligned_cols=123 Identities=40% Similarity=0.493 Sum_probs=117.4
Q ss_pred ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhc-cCCcccEEEEeecCCcccHHHHHHHHHHH
Q psy6189 415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTD-MLNKVDIVASVREGGHSGQAGAIRWGISW 493 (539)
Q Consensus 415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~-~~~k~DI~a~V~GGG~sGQA~AIrlAIAr 493 (539)
++|+||+|+|+|+|. +|+|+|+|||+++.+|| +...|+.|++||.+++ .+++|||+|+|+|||.||||+||||||||
T Consensus 4 ~~GrRKta~A~v~l~-~G~G~i~VNg~~~~~y~-~~~~r~~i~~Pl~~~~~~~~~~Dv~i~V~GGG~sgQa~Air~aIar 81 (130)
T TIGR03627 4 TSGKRKTAIARATIR-EGKGRVRINGVPVELYP-PELARLKIMEPLILAGDIAKEVDIDVKVSGGGIMGQADAARTAIAR 81 (130)
T ss_pred EEeeCCCeEEEEEEE-cCceEEEECCEeHHHhC-CHHHHHHHHHHHHHHhccccCccEEEEEEcCChhHHHHHHHHHHHH
Confidence 689999999999996 99999999999996665 7889999999999997 89999999999999999999999999999
Q ss_pred HHHccC-ChhhHHHHHH--CCCcccCCCccccCCCCcccccccccccCC
Q psy6189 494 GLRNFV-EPEMRERMRL--AGLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 494 ALv~~v-~p~~k~~Lr~--agLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
||+.|. +|++++.|+. +||||+|+|+|||||||++||||+||||||
T Consensus 82 aL~~~~~~~~~r~~lk~~d~glLtrD~R~~ERKK~G~~kARk~~Q~SkR 130 (130)
T TIGR03627 82 GLVEFTGDKELRDAFRAYDRTLLVNDPRRKEPKKPGGRGARAKRQKSYR 130 (130)
T ss_pred HHHHhccCHHHHHHHHHhcCCCccCCchhhccCcCCCccccccccccCC
Confidence 999985 6899999998 899999999999999999999999999998
No 7
>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed
Probab=100.00 E-value=9.5e-45 Score=331.56 Aligned_cols=124 Identities=35% Similarity=0.392 Sum_probs=117.9
Q ss_pred cccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhc--cCCcccEEEEeecCCcccHHHHHHHHH
Q psy6189 414 TKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTD--MLNKVDIVASVREGGHSGQAGAIRWGI 491 (539)
Q Consensus 414 ~~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~--~~~k~DI~a~V~GGG~sGQA~AIrlAI 491 (539)
.++|+||+|+|+|++. +|+|+|+|||+|+.+|| +...|++|++||.+++ .+++|||+|+|+|||.||||+||||||
T Consensus 6 ~~~GrRKta~A~v~l~-~G~G~i~VNg~~~~~y~-~~~~r~~i~~Pl~~~~~~~~~~~di~i~V~GGG~sgQa~Air~aI 83 (134)
T PRK00474 6 ITSGKRKTAIARATIR-EGKGRVRINGVPLELIE-PELARLKIMEPLILAGEDLRSKVDIDVNVEGGGIMGQADAARTAI 83 (134)
T ss_pred EEEeeCCCeEEEEEEE-cCceEEEECCEeHHHHC-CHHHHHHHHHHHHHhCccccCCccEEEEEEcCChhHHHHHHHHHH
Confidence 3689999999999996 99999999999996665 7899999999999999 999999999999999999999999999
Q ss_pred HHHHHccC-ChhhHHHHHH--CCCcccCCCccccCCCCcccccccccccCC
Q psy6189 492 SWGLRNFV-EPEMRERMRL--AGLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 492 ArALv~~v-~p~~k~~Lr~--agLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
|||||+|+ +|++++.|+. +||||+|||+|||||||++||||+||||||
T Consensus 84 araL~~~~~~~~~r~~lk~~d~glLtrD~R~~ERKK~G~~kARk~~Q~SkR 134 (134)
T PRK00474 84 ARGLVEWTGDMELKDAFLAYDRTLLVGDPRRTEPKKWGGKGARAKRQKSYR 134 (134)
T ss_pred HHHHHHhccCHHHHHHHHHhcCCCcccCchhhccCcCCCccccccccccCC
Confidence 99999986 6899999998 899999999999999999999999999998
No 8
>PTZ00086 40S ribosomal protein S16; Provisional
Probab=100.00 E-value=4.4e-44 Score=331.45 Aligned_cols=123 Identities=33% Similarity=0.376 Sum_probs=117.3
Q ss_pred ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhcc--CCcccEEEEeecCCcccHHHHHHHHHH
Q psy6189 415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDM--LNKVDIVASVREGGHSGQAGAIRWGIS 492 (539)
Q Consensus 415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~--~~k~DI~a~V~GGG~sGQA~AIrlAIA 492 (539)
++||||+|+|+|+|. +|+|+|+|||+|+.+||+ ...|++|++||.+++. +++|||+|+|+|||.||||+|||||||
T Consensus 13 ~~GrRKtAiArv~l~-~G~G~i~INg~~l~~y~~-~~~r~~i~~Pl~~~~~~~~~~~Di~i~V~GGG~sgQA~Air~aIa 90 (147)
T PTZ00086 13 TFGKKKTAVAVALVT-KGKGLIRVNGVPLDLINP-ETLRAKVFEPLLLVGKERFSRLDIRVRVRGGGQVAQAYAIRQAIA 90 (147)
T ss_pred EeeecCCceEEEEEE-cCCceEEECCcCHHHhCc-HHHHHHHHHHHHHhCcCccCceeEEEEEEcCCHHHHHHHHHHHHH
Confidence 689999999999996 999999999999999998 7889999999999975 899999999999999999999999999
Q ss_pred HHHHccC----ChhhHHHHHHC------CCcccCCCccccCCCCcccccccccccCC
Q psy6189 493 WGLRNFV----EPEMRERMRLA------GLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 493 rALv~~v----~p~~k~~Lr~a------gLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
||||.|. +++.++.|+.+ ||||+|||+|||||||++||||+||||||
T Consensus 91 RAL~~~~~~~~~~~~r~~Lk~~~~~ydrglLtrD~R~~ERKK~G~~kARk~~Q~SkR 147 (147)
T PTZ00086 91 KGLVAYYQKYVDEATKAELKDKLLAYDRSLLVADPRRCEPKKFGGPGARARFQKSYR 147 (147)
T ss_pred HHHHHHhcccCChHHHHHHHHHHhhccCCcccCCccccccCcCCCcccccccccccC
Confidence 9999983 67888999987 99999999999999999999999999998
No 9
>PLN00210 40S ribosomal protein S16; Provisional
Probab=100.00 E-value=5.6e-44 Score=328.87 Aligned_cols=124 Identities=30% Similarity=0.292 Sum_probs=115.0
Q ss_pred cccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhc--cCCcccEEEEeecCCcccHHHHHHHHH
Q psy6189 414 TKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTD--MLNKVDIVASVREGGHSGQAGAIRWGI 491 (539)
Q Consensus 414 ~~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~--~~~k~DI~a~V~GGG~sGQA~AIrlAI 491 (539)
.++||||+|+|+|++. +|+|+|+|||+|+.+||+ ...|++|++||.+++ .+++|||+|+|+|||.||||+||||||
T Consensus 6 ~~~GrRKta~Arv~~~-~G~G~i~INg~~~~~y~~-~~~r~~i~~Pl~~~~~~~~~~~Di~~~V~GGG~sgQa~Air~ai 83 (141)
T PLN00210 6 QCFGRKKTAVAVTYCK-RGRGLIKINGCPIELVQP-EILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSI 83 (141)
T ss_pred eeeccCCCceEEEEEE-CCCceEEECCCcHHHHCC-HHHHHHHHHHHHHhCccccCceeEEEEEEcCCHhHHHHHHHHHH
Confidence 3689999999999995 999999999999977766 788999999999998 469999999999999999999999999
Q ss_pred HHHHHccC----ChhhHHHHHH------CCCcccCCCccccCCCCcccccccccccCC
Q psy6189 492 SWGLRNFV----EPEMRERMRL------AGLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 492 ArALv~~v----~p~~k~~Lr~------agLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
||||+.|. +++.++.|++ +||||+|||+|||||||++||||+||||||
T Consensus 84 araL~~~~~~~~~~~~r~~Lk~~l~~yd~glLtrD~R~~ERKK~G~~kARk~~Q~Skr 141 (141)
T PLN00210 84 AKALVAYYQKYVDEQSKKEIKDILLRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 141 (141)
T ss_pred HHHHHHhcccccChhHHHHHHHHHHhccCCCccCCchhhccCcCCccccccccccccC
Confidence 99999983 4477777777 999999999999999999999999999998
No 10
>KOG1753|consensus
Probab=99.94 E-value=1e-27 Score=216.69 Aligned_cols=123 Identities=30% Similarity=0.381 Sum_probs=115.3
Q ss_pred ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhc--cCCcccEEEEeecCCcccHHHHHHHHHH
Q psy6189 415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTD--MLNKVDIVASVREGGHSGQAGAIRWGIS 492 (539)
Q Consensus 415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~--~~~k~DI~a~V~GGG~sGQA~AIrlAIA 492 (539)
.+|++|+|+|.+.+ +.|+|.|.|||+|+ +.+++...|.++++|+.+++ .+..+||.|+|+|||.++|..|||++||
T Consensus 11 ~fG~KK~AtAva~c-k~G~glikvNg~pl-e~ie~~~L~~Kl~Epvlllgk~rfa~vdi~v~~~ggghvsqiyairqa~~ 88 (145)
T KOG1753|consen 11 VFGRKKTATAVAHC-KHGSGLIKVNGRPL-ELIEPEILRYKLLEPVLLLGKERFAGVDIRVRVKGGGHVSQIYAIRQAIA 88 (145)
T ss_pred eeccccceEEEEEe-ecCceEEEECCcch-HhccHHHHHHHHhhhHhhhhhhhhCCCceEEEEecCchHHHHHHHHHHhh
Confidence 47999999999998 69999999999999 99999999999999999995 7789999999999999999999999999
Q ss_pred HHHHcc----CChhhHHHHHH------CCCcccCCCccccCCCCcccccccccccCC
Q psy6189 493 WGLRNF----VEPEMRERMRL------AGLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 493 rALv~~----v~p~~k~~Lr~------agLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
+||++| +|+..++.+++ +.||+.|||++|+||+|++|||+++|.|+|
T Consensus 89 kalvayyqkyvDE~skkeiKd~li~yDrtlLVADprr~esKKFGGpGAraryQksyr 145 (145)
T KOG1753|consen 89 KALVAYYQKYVDEQSKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 145 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCceEEEcCcccccccccCCcchHHHhhhhcC
Confidence 999996 57777777775 899999999999999999999999999987
No 11
>KOG1697|consensus
Probab=99.59 E-value=8.3e-16 Score=152.76 Aligned_cols=82 Identities=39% Similarity=0.715 Sum_probs=78.5
Q ss_pred cccCCCCCCCccccchhhHHHHHHHHHHHHHHhhHHHHhhhHHHhhhhhHHHhhhCCCCCCCCHHHHHHHHHhhcCCCCC
Q psy6189 39 ETANIPETPHHDMFDRTKVSKAMQAYLKRAEDYTNFMEGEKHSFEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLY 118 (539)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~gkr~la~mmg~d~~~f~~~di~~ai~yl~ps~l~ 118 (539)
.++....++..+.+++.+|+||+..|+++...|+.||++|+.|||+|| |||||||+||.||||||||
T Consensus 13 ~s~~~~~q~~~~~~~~~~i~k~~~~y~k~~~~~d~~~~~~~~efe~gK-------------~~qedid~ai~~l~psg~~ 79 (275)
T KOG1697|consen 13 MSTAVPAQASDSDTSVRKIPKALETYLKRSTQHDAFMKKQRLEFEIGK-------------LTQEDIDRAISYLFPSGLF 79 (275)
T ss_pred CccCCccccccccchhhhhhhhhhhhccCcchHHHHHHHHHHHHhhcc-------------CcchhhHHHHHHhcccccc
Confidence 366788889999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCCCCCCCCCCccCCCCcccccCCC
Q psy6189 119 SKKARPYMKHPEEVFPPKKDAEFDNL 144 (539)
Q Consensus 119 ~~~arp~m~~p~~~~p~~~~~~~d~~ 144 (539)
|+.|||.| +.+||++
T Consensus 80 d~~arp~m-----------~~~~~et 94 (275)
T KOG1697|consen 80 DPNARPVM-----------AFQFDET 94 (275)
T ss_pred Cccccccc-----------cccCCcc
Confidence 99999999 8899998
No 12
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=65.82 E-value=19 Score=42.02 Aligned_cols=87 Identities=15% Similarity=0.196 Sum_probs=51.6
Q ss_pred CCCCCCeeeecccccC-cce--EEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhh----------ccCCccc
Q psy6189 404 AGEDGVKFVTTKDCPR-KCA--RADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFT----------DMLNKVD 470 (539)
Q Consensus 404 lDe~Gra~vs~~~GkR-KtA--~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~----------~~~~k~D 470 (539)
...-|.++ +.+.+-- ... .-.|.+. +|+|++.++|..+. ...+|.+-..+..+ ..+.++|
T Consensus 492 p~~pGvv~-GLA~t~~Gg~~Ly~IE~~~~-~G~Gkl~lTG~~lg-----~vmKESa~~A~sy~ks~a~~l~~~~~~~~~D 564 (675)
T TIGR02653 492 PPKPGVVY-AVTQNESGKVGLYRFEVQVS-AGSGKHSVSGLGSN-----TTAKESIRVAFDYFKGNLVRISASAKFSEHD 564 (675)
T ss_pred CCCCeEEE-EEEEcCCCCeEEEEEEEEEe-CCCCceeeccCCch-----HHHHHHHHHHHHHHHHhHHhcCCCcccCcce
Confidence 34456666 3332211 333 2456665 89999999996652 23445554444443 2467899
Q ss_pred EEEEeecCCcccHHHHHHHHHHHHHHc
Q psy6189 471 IVASVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 471 I~a~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
|++.|--|...|=.-.+-+|++-|||+
T Consensus 565 iHIHvpega~pkdGpSAGia~~~AL~S 591 (675)
T TIGR02653 565 YHLHVVDLHNTGPSTEASLAALIALCS 591 (675)
T ss_pred EEEECCCCCCCCCCchhHHHHHHHHHH
Confidence 999997766665554455555556655
No 13
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=64.86 E-value=10 Score=44.67 Aligned_cols=66 Identities=21% Similarity=0.289 Sum_probs=42.5
Q ss_pred EEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhh-----------ccCCcccEEEEeecCCcccHHHHHHHHHHH
Q psy6189 425 DVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFT-----------DMLNKVDIVASVREGGHSGQAGAIRWGISW 493 (539)
Q Consensus 425 ~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~-----------~~~~k~DI~a~V~GGG~sGQA~AIrlAIAr 493 (539)
.|.++ +|+|++.++| .+.+ ..++.+...+..+ +..+.+||++.|-||....---++-+|++-
T Consensus 614 E~~~~-~g~g~~~~tG-~lg~-----vmkes~~~A~~~~~~~~~~~~~~~~~~~~~Di~i~v~~g~~~~dgpsagla~~~ 686 (784)
T PRK10787 614 ETACV-PGKGKLTYTG-SLGE-----VMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGIAMCT 686 (784)
T ss_pred EEEEe-cCCceEEEec-CcHH-----HHHHHHHHHHHHHHHHHHHcCCCcccccCceEEEEecCCCCCCCCCchHHHHHH
Confidence 34444 8999999999 4533 4566666666554 134678999999998765332334455555
Q ss_pred HHHc
Q psy6189 494 GLRN 497 (539)
Q Consensus 494 ALv~ 497 (539)
||++
T Consensus 687 Al~S 690 (784)
T PRK10787 687 ALVS 690 (784)
T ss_pred HHHH
Confidence 5555
No 14
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=56.69 E-value=9.5 Score=43.44 Aligned_cols=29 Identities=28% Similarity=0.325 Sum_probs=18.9
Q ss_pred cccEEEEeecCCcccHHHHHHHHHHHHHHc
Q psy6189 468 KVDIVASVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 468 k~DI~a~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
..|-.+--.|-|.|| =+|-|+|+||||+.
T Consensus 445 GLdt~ige~G~~LSg-GQ~QRlaLARAll~ 473 (559)
T COG4988 445 GLDTVIGEGGAGLSG-GQAQRLALARALLS 473 (559)
T ss_pred cccchhccCCCCCCH-HHHHHHHHHHHhcC
Confidence 344445455656654 24569999999987
No 15
>COG1750 Archaeal serine proteases [General function prediction only]
Probab=49.49 E-value=30 Score=39.69 Aligned_cols=73 Identities=23% Similarity=0.378 Sum_probs=53.4
Q ss_pred EEEEEEeecCeeEEEEcCcchhhh-CCChHHHHHhhhHHHhhcc-CCcccEEEEeec-----CCcccHHHHHHHHHHHHH
Q psy6189 423 RADVTVYQPGTGKITINEKHYFDY-FPDENDRQQLMFPLIFTDM-LNKVDIVASVRE-----GGHSGQAGAIRWGISWGL 495 (539)
Q Consensus 423 ~A~V~l~~~GsG~I~ING~~l~ey-F~~~~~Re~il~PL~~~~~-~~k~DI~a~V~G-----GG~sGQA~AIrlAIArAL 495 (539)
.-.|++ .||+|.+.|-+.|+.+. ++ ...|-.....+.++|. +.+||+.+.|+- ||+|+ -+++..|+=-+|
T Consensus 53 ~~~vtv-~pG~G~v~v~t~P~t~~d~~-~SArvAa~~A~~~~Gvd~ssyd~~i~v~a~~pVVGgPSa-gg~mtva~~~~~ 129 (579)
T COG1750 53 NISVTV-TPGDGRVYVATFPYTQIDMQ-GSARVAAGVALRLAGVDMSSYDVYIAVEADSPVVGGPSA-GGYMTVAIYAAL 129 (579)
T ss_pred eeeeee-cCCCceEEeecCCCchhccc-hhhHHHHHHHHHhhCCCccceeEEEEEecCCCeecCccc-chHhHHHHHHHH
Confidence 334666 49999999999999665 33 3567777888888874 679999999976 55554 355666766666
Q ss_pred Hcc
Q psy6189 496 RNF 498 (539)
Q Consensus 496 v~~ 498 (539)
.-+
T Consensus 130 ~~~ 132 (579)
T COG1750 130 MGW 132 (579)
T ss_pred hCC
Confidence 665
No 16
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=47.76 E-value=23 Score=36.68 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=35.6
Q ss_pred HHHHHhhhHHHhhccCC---cccEEEEeecCCcccHHHHH-HHHHHHHHHcc
Q psy6189 451 NDRQQLMFPLIFTDMLN---KVDIVASVREGGHSGQAGAI-RWGISWGLRNF 498 (539)
Q Consensus 451 ~~Re~il~PL~~~~~~~---k~DI~a~V~GGG~sGQA~AI-rlAIArALv~~ 498 (539)
..-..|...|..++..+ .|||.|.++|||-..-=.+- -..|||||+.+
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~ 106 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAAS 106 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhC
Confidence 45677888888887665 89999999999976544443 55677777764
No 17
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=47.35 E-value=22 Score=40.71 Aligned_cols=29 Identities=21% Similarity=0.107 Sum_probs=19.5
Q ss_pred CcccEEEEeecCCcc-cHHHHHHHHHHHHHHc
Q psy6189 467 NKVDIVASVREGGHS-GQAGAIRWGISWGLRN 497 (539)
Q Consensus 467 ~k~DI~a~V~GGG~s-GQA~AIrlAIArALv~ 497 (539)
..||..+.-.|...| ||.+ |+||||||+.
T Consensus 599 ~gldt~i~e~G~~LSgGQrQ--RialARall~ 628 (708)
T TIGR01193 599 LGYQTELSEEGSSISGGQKQ--RIALARALLT 628 (708)
T ss_pred cccCcEecCCCCCCCHHHHH--HHHHHHHHhh
Confidence 356766655555555 4444 8889999997
No 18
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=44.58 E-value=28 Score=39.86 Aligned_cols=30 Identities=20% Similarity=0.105 Sum_probs=20.0
Q ss_pred CcccEEEEeecCCcccHHHHHHHHHHHHHHc
Q psy6189 467 NKVDIVASVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 467 ~k~DI~a~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
+.||-.+.-.|...||= +-=|+||||||+.
T Consensus 603 ~gl~t~i~e~G~~LSGG-QrQRiaLARall~ 632 (710)
T TIGR03796 603 GGYDAELAEGGANLSGG-QRQRLEIARALVR 632 (710)
T ss_pred CcccceeccCCCCCCHH-HHHHHHHHHHHhh
Confidence 35676666556556542 3448889999997
No 19
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=43.61 E-value=31 Score=37.94 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=45.1
Q ss_pred ccCcceEEEEEE--eecCeeEEEEcCcchhhh-----------------CC-----------ChHHHHHhhhHHHhhcc-
Q psy6189 417 CPRKCARADVTV--YQPGTGKITINEKHYFDY-----------------FP-----------DENDRQQLMFPLIFTDM- 465 (539)
Q Consensus 417 GkRKtA~A~V~l--~~~GsG~I~ING~~l~ey-----------------F~-----------~~~~Re~il~PL~~~~~- 465 (539)
|.-||..++.-+ +++.+|.|.|||.++.++ |. +....+++.+.+..++.
T Consensus 371 GsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~ 450 (529)
T TIGR02868 371 GSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLA 450 (529)
T ss_pred CCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCH
Confidence 455666554421 246789999999887533 11 11122333444444431
Q ss_pred ------CCcccEEEEeecCCcc-cHHHHHHHHHHHHHHc
Q psy6189 466 ------LNKVDIVASVREGGHS-GQAGAIRWGISWGLRN 497 (539)
Q Consensus 466 ------~~k~DI~a~V~GGG~s-GQA~AIrlAIArALv~ 497 (539)
-+.||-.+--+|...| ||.+ |+||||||+.
T Consensus 451 ~~i~~lp~GldT~ige~G~~LSGGQrQ--RiaiARall~ 487 (529)
T TIGR02868 451 DWLRSLPDGLDTVLGEGGARLSGGERQ--RLALARALLA 487 (529)
T ss_pred HHHHhCcccccchhccccCcCCHHHHH--HHHHHHHHhc
Confidence 2456766655554455 3444 9999999998
No 20
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=43.39 E-value=32 Score=38.25 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=45.1
Q ss_pred ccCcceEEEE--EEeecCeeEEEEcCcchhhh------------------CC-----------ChHHHHHhhhHHHhhc-
Q psy6189 417 CPRKCARADV--TVYQPGTGKITINEKHYFDY------------------FP-----------DENDRQQLMFPLIFTD- 464 (539)
Q Consensus 417 GkRKtA~A~V--~l~~~GsG~I~ING~~l~ey------------------F~-----------~~~~Re~il~PL~~~~- 464 (539)
|--|+..++. .++.+-+|+|.|||.++.++ |. +....++|.+.+..++
T Consensus 365 GsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~ 444 (567)
T COG1132 365 GSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANA 444 (567)
T ss_pred CCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhCh
Confidence 4446555443 22345689999999987432 11 1112234555555442
Q ss_pred ------cCCcccEEEEeecCCcccHHHHHHHHHHHHHHc
Q psy6189 465 ------MLNKVDIVASVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 465 ------~~~k~DI~a~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
.-+.||-.+- .||..-+.=+--|+||||||+.
T Consensus 445 ~d~I~~lp~g~dt~vg-e~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 445 HEFIANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred HHHHHhCcccccceec-CCCccCCHHHHHHHHHHHHHhc
Confidence 1225777776 3344433345558999999998
No 21
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=42.64 E-value=25 Score=44.35 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=40.1
Q ss_pred ecCeeEEEEcCcchhhh------------------CCC----------hHHHHHhhhHHHhhcc------C-CcccEEEE
Q psy6189 430 QPGTGKITINEKHYFDY------------------FPD----------ENDRQQLMFPLIFTDM------L-NKVDIVAS 474 (539)
Q Consensus 430 ~~GsG~I~ING~~l~ey------------------F~~----------~~~Re~il~PL~~~~~------~-~k~DI~a~ 474 (539)
.+-+|+|.|||+++.++ |.. ....+.|...+..++. + +.+|-.+.
T Consensus 1337 ~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~ 1416 (1522)
T TIGR00957 1337 ESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECA 1416 (1522)
T ss_pred cCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceec
Confidence 35679999999987422 111 1223445555554432 1 56777766
Q ss_pred eecCCccc-HHHHHHHHHHHHHHc
Q psy6189 475 VREGGHSG-QAGAIRWGISWGLRN 497 (539)
Q Consensus 475 V~GGG~sG-QA~AIrlAIArALv~ 497 (539)
-.|...|| |.+ |+||||||+.
T Consensus 1417 e~G~~LSgGQrQ--rl~LARALLr 1438 (1522)
T TIGR00957 1417 EGGENLSVGQRQ--LVCLARALLR 1438 (1522)
T ss_pred CCCCcCCHHHHH--HHHHHHHHHc
Confidence 55555553 554 8889999997
No 22
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=42.55 E-value=28 Score=43.95 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=41.5
Q ss_pred ecCeeEEEEcCcchhhhC-----------------------------CChHHHHHhhhHHHhhc-------cCCcccEEE
Q psy6189 430 QPGTGKITINEKHYFDYF-----------------------------PDENDRQQLMFPLIFTD-------MLNKVDIVA 473 (539)
Q Consensus 430 ~~GsG~I~ING~~l~eyF-----------------------------~~~~~Re~il~PL~~~~-------~~~k~DI~a 473 (539)
.+-+|.|+|||+++.+|= .+....++|...+..++ +-..||-.|
T Consensus 1273 ~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~V 1352 (1466)
T PTZ00265 1273 FKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNV 1352 (1466)
T ss_pred CCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCcc
Confidence 367899999999984421 11112233444444432 225678777
Q ss_pred EeecCCcccHHHHHHHHHHHHHHc
Q psy6189 474 SVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 474 ~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
--+|...|| =+.=|+||||||+.
T Consensus 1353 Ge~G~~LSG-GQkQRIaIARALlr 1375 (1466)
T PTZ00265 1353 GPYGKSLSG-GQKQRIAIARALLR 1375 (1466)
T ss_pred CCCCCcCCH-HHHHHHHHHHHHhc
Confidence 666666664 34459999999998
No 23
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=42.31 E-value=76 Score=36.50 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=53.9
Q ss_pred CCCCeeeecccccCcceEEEEEEee-----cCeeEEEEcCcchhhhCCChHHHHHhhhHHHhh----c-cCCcccEEEEe
Q psy6189 406 EDGVKFVTTKDCPRKCARADVTVYQ-----PGTGKITINEKHYFDYFPDENDRQQLMFPLIFT----D-MLNKVDIVASV 475 (539)
Q Consensus 406 e~Gra~vs~~~GkRKtA~A~V~l~~-----~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~----~-~~~k~DI~a~V 475 (539)
+.|+.+ +.++.-=.-..-.|.+.. +|.|.|..+|... ...++.|...+.++ + .+..+||+|++
T Consensus 445 ~~g~v~-~~~~~g~~g~~v~vE~~~~~~g~pg~~~vgl~~~~~------~e~kerv~~A~~~l~~~~g~~~~~~di~vnl 517 (615)
T TIGR02903 445 EVGHVF-GLGVSGFVGSVLEIEAVAFEAKEPGKGTVRFNDTAG------SMAKDSVFNAASVIRKITGKDLSNYDIHVNV 517 (615)
T ss_pred CcEEEE-EEEEeCCCcEEEEEEEEEecCCCCCCceEeeCCcch------HHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Confidence 456666 322221233344444443 6888888888655 34688888888744 3 46789999999
Q ss_pred ecCCcccHHHHHHHHHHHHHHcc
Q psy6189 476 REGGHSGQAGAIRWGISWGLRNF 498 (539)
Q Consensus 476 ~GGG~sGQA~AIrlAIArALv~~ 498 (539)
.||+. ..--++-+|||-||++-
T Consensus 518 ~~~~~-k~gpsadLaia~ailSa 539 (615)
T TIGR02903 518 IGGGR-IDGPSAGAAITLCMISA 539 (615)
T ss_pred CCCCC-CCCchHHHHHHHHHHHh
Confidence 98873 45555566777777664
No 24
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=41.41 E-value=28 Score=39.85 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=19.9
Q ss_pred CcccEEEEeecCCcccHHHHHHHHHHHHHHc
Q psy6189 467 NKVDIVASVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 467 ~k~DI~a~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
..||-.+.-.|...||= +-=|+||||||+.
T Consensus 589 ~gl~T~i~e~G~~LSgG-QrQRlalARall~ 618 (694)
T TIGR03375 589 DGLDMQIGERGRSLSGG-QRQAVALARALLR 618 (694)
T ss_pred ccccceecCCCCCCCHH-HHHHHHHHHHHhc
Confidence 35676665555555542 3448899999997
No 25
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=39.90 E-value=37 Score=39.28 Aligned_cols=29 Identities=21% Similarity=0.160 Sum_probs=18.4
Q ss_pred cccEEEEeecCCcccHHHHHHHHHHHHHHc
Q psy6189 468 KVDIVASVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 468 k~DI~a~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
.+|-.+.-.|...|| =+.=|+||||||+.
T Consensus 606 GldT~ige~G~~LSG-GQkQRlalARALl~ 634 (711)
T TIGR00958 606 GYDTEVGEKGSQLSG-GQKQRIAIARALVR 634 (711)
T ss_pred ccCCcccCCCCcCCH-HHHHHHHHHHHHhc
Confidence 466665444444442 23458899999998
No 26
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=39.15 E-value=19 Score=31.20 Aligned_cols=16 Identities=44% Similarity=0.468 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHhhcCC
Q psy6189 238 FTQKDIDEAIAYLMPS 253 (539)
Q Consensus 238 fTqedIdrAI~YLfPS 253 (539)
-+|+|.|+||++|==|
T Consensus 51 ~~Q~DLDkAie~ld~s 66 (79)
T cd06405 51 KNQEDLDRAIELLDRS 66 (79)
T ss_pred cCHHHHHHHHHHHccC
Confidence 4899999999998443
No 27
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=38.96 E-value=17 Score=37.90 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=50.0
Q ss_pred cccCcceEEEE--EEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhc----cCCcccEEEEeecCCcccHHHHHHH
Q psy6189 416 DCPRKCARADV--TVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTD----MLNKVDIVASVREGGHSGQAGAIRW 489 (539)
Q Consensus 416 ~GkRKtA~A~V--~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~----~~~k~DI~a~V~GGG~sGQA~AIrl 489 (539)
.|.-||..|++ .+.++-+|+|..+|+++ .-+.....++.|.+=|..++ .+.+|+-.. +| ||-+ |.
T Consensus 48 SG~GKSTlgr~i~~L~~pt~G~i~f~g~~i-~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhel--SG----GQrQ--Ri 118 (268)
T COG4608 48 SGCGKSTLGRLILGLEEPTSGEILFEGKDI-TKLSKEERRERVLELLEKVGLPEEFLYRYPHEL--SG----GQRQ--RI 118 (268)
T ss_pred CCCCHHHHHHHHHcCcCCCCceEEEcCcch-hhcchhHHHHHHHHHHHHhCCCHHHhhcCCccc--Cc----hhhh--hH
Confidence 36677777775 34456789999999998 43444445667877777765 456677665 33 3444 78
Q ss_pred HHHHHHHc
Q psy6189 490 GISWGLRN 497 (539)
Q Consensus 490 AIArALv~ 497 (539)
+|||||..
T Consensus 119 ~IARALal 126 (268)
T COG4608 119 GIARALAL 126 (268)
T ss_pred HHHHHHhh
Confidence 89999875
No 28
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=38.48 E-value=34 Score=38.17 Aligned_cols=79 Identities=18% Similarity=0.117 Sum_probs=45.3
Q ss_pred ccCcceEEEEE--EeecCeeEEEEcCcchhhh------------------CC-----------ChHHHHHhhhHHHhhc-
Q psy6189 417 CPRKCARADVT--VYQPGTGKITINEKHYFDY------------------FP-----------DENDRQQLMFPLIFTD- 464 (539)
Q Consensus 417 GkRKtA~A~V~--l~~~GsG~I~ING~~l~ey------------------F~-----------~~~~Re~il~PL~~~~- 464 (539)
|--|++.++.- ++ +-+|+|.|||+++.++ |. +....+.+.+.+..++
T Consensus 386 GsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l 464 (588)
T PRK11174 386 GAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWV 464 (588)
T ss_pred CCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCH
Confidence 44566554431 12 4479999999886431 11 1122344444455443
Q ss_pred ------cCCcccEEEEeecCCcccHHHHHHHHHHHHHHc
Q psy6189 465 ------MLNKVDIVASVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 465 ------~~~k~DI~a~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
.-+.||-.+--+|...||= +-=|+||||||+.
T Consensus 465 ~~~i~~lp~G~dT~vge~G~~LSGG-QrQRialARAll~ 502 (588)
T PRK11174 465 SEFLPLLPQGLDTPIGDQAAGLSVG-QAQRLALARALLQ 502 (588)
T ss_pred HHHHHhcccccccccccCCCCCCHH-HHHHHHHHHHHhc
Confidence 2246777776666666642 2448999999998
No 29
>PLN03232 ABC transporter C family member; Provisional
Probab=36.74 E-value=41 Score=42.49 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=39.8
Q ss_pred ecCeeEEEEcCcchhhh------------------CCC----------hHHHHHhhhHHHhhcc-------CCcccEEEE
Q psy6189 430 QPGTGKITINEKHYFDY------------------FPD----------ENDRQQLMFPLIFTDM-------LNKVDIVAS 474 (539)
Q Consensus 430 ~~GsG~I~ING~~l~ey------------------F~~----------~~~Re~il~PL~~~~~-------~~k~DI~a~ 474 (539)
.+-+|+|.|||+++.++ |.. ...-++|.+.+..++. -+.+|-.+.
T Consensus 1287 ~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~ 1366 (1495)
T PLN03232 1287 ELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVS 1366 (1495)
T ss_pred cCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceec
Confidence 36679999999997431 110 1122445555554432 246776665
Q ss_pred eecCCccc-HHHHHHHHHHHHHHc
Q psy6189 475 VREGGHSG-QAGAIRWGISWGLRN 497 (539)
Q Consensus 475 V~GGG~sG-QA~AIrlAIArALv~ 497 (539)
-.|...|| |-+ |+||||||+.
T Consensus 1367 e~G~~LSgGQrQ--rlaLARALLr 1388 (1495)
T PLN03232 1367 EGGENFSVGQRQ--LLSLARALLR 1388 (1495)
T ss_pred CCCCCCCHHHHH--HHHHHHHHHh
Confidence 55555553 544 8889999997
No 30
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=36.70 E-value=12 Score=30.98 Aligned_cols=55 Identities=25% Similarity=0.232 Sum_probs=41.3
Q ss_pred ccCCcccEEEEeecCCcccHHHHHHHHHHHHHHccCChhhHHHHHHCCCcccCCCc
Q psy6189 464 DMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRR 519 (539)
Q Consensus 464 ~~~~k~DI~a~V~GGG~sGQA~AIrlAIArALv~~v~p~~k~~Lr~agLLtrDpR~ 519 (539)
.-+|.++|.+.+.||+.+.+..|=....+..|-.. -++++..|...|+-..+..+
T Consensus 22 ~~LG~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~-~~~L~~~L~~~G~~~~~~~v 76 (85)
T PF02120_consen 22 PELGSVEVKLRLQGGNLSVQFTAENPETKELLRQN-LPELKERLQAQGLEVVNLSV 76 (85)
T ss_dssp GGG--EEEEEEEETTEEEEEEE--SSHHHHHHHHT-HHHHHHHHHTTT-EEEEEEE
T ss_pred cccCcEEEEEEEeCCEEEEEEEECCHHHHHHHHHH-HHHHHHHHHHCCCCeEEEEE
Confidence 46799999999999999999888887778888777 68899999999987655443
No 31
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=36.14 E-value=22 Score=30.76 Aligned_cols=14 Identities=43% Similarity=0.503 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHhhc
Q psy6189 100 FTQKDIDEAIAYLM 113 (539)
Q Consensus 100 f~~~di~~ai~yl~ 113 (539)
-+|+|.|+||++|=
T Consensus 51 ~~Q~DLDkAie~ld 64 (79)
T cd06405 51 KNQEDLDRAIELLD 64 (79)
T ss_pred cCHHHHHHHHHHHc
Confidence 48999999999984
No 32
>KOG3288|consensus
Probab=35.54 E-value=24 Score=36.92 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=29.0
Q ss_pred CCcccEEEEeecCCcccHHHHHHHHHHHHHHcc
Q psy6189 466 LNKVDIVASVREGGHSGQAGAIRWGISWGLRNF 498 (539)
Q Consensus 466 ~~k~DI~a~V~GGG~sGQA~AIrlAIArALv~~ 498 (539)
..+|-+.|.|.+=|.+||.+|.+||-|-+=+.|
T Consensus 272 t~~ftlRC~~Cq~glvGq~ea~eHA~~TGH~nF 304 (307)
T KOG3288|consen 272 TAKFTLRCMVCQMGLVGQKEAAEHAKATGHVNF 304 (307)
T ss_pred ccceEEEeeecccceeeHHHHHHHHHhcCCCcc
Confidence 468999999999999999999999988765555
No 33
>KOG0058|consensus
Probab=35.48 E-value=38 Score=39.80 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=47.9
Q ss_pred ccCcceEEEE--EEeecCeeEEEEcCcchhhhCCChHHHHHhh----hHHH-----------------------------
Q psy6189 417 CPRKCARADV--TVYQPGTGKITINEKHYFDYFPDENDRQQLM----FPLI----------------------------- 461 (539)
Q Consensus 417 GkRKtA~A~V--~l~~~GsG~I~ING~~l~eyF~~~~~Re~il----~PL~----------------------------- 461 (539)
|.-|+++|.- .++.|-+|+|+++|+||.+| .....|.+|- +|+.
T Consensus 504 GsGKSTiasLL~rfY~PtsG~IllDG~~i~~~-~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~AN 582 (716)
T KOG0058|consen 504 GSGKSTIASLLLRFYDPTSGRILLDGVPISDI-NHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMAN 582 (716)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEECCeehhhc-CHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence 4445555432 22347789999999999665 3444554432 2221
Q ss_pred ----hhccCCcccEEEEeecCCcc-cHHHHHHHHHHHHHHc
Q psy6189 462 ----FTDMLNKVDIVASVREGGHS-GQAGAIRWGISWGLRN 497 (539)
Q Consensus 462 ----~~~~~~k~DI~a~V~GGG~s-GQA~AIrlAIArALv~ 497 (539)
+++.-.+||-.|--+|-=.| ||-+ |.||||||+.
T Consensus 583 ah~FI~~~p~gY~T~VGEkG~qLSGGQKQ--RIAIARALlr 621 (716)
T KOG0058|consen 583 AHEFITNFPDGYNTVVGEKGSQLSGGQKQ--RIAIARALLR 621 (716)
T ss_pred hHHHHHhCccccccccCCccccccchHHH--HHHHHHHHhc
Confidence 12345678888877773333 4665 7789999997
No 34
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=33.59 E-value=54 Score=36.67 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=45.6
Q ss_pred ccCcceEEEEE--EeecCeeEEEEcCcchhhh------------------CCC----------hHHHHHhhhHHHhhc--
Q psy6189 417 CPRKCARADVT--VYQPGTGKITINEKHYFDY------------------FPD----------ENDRQQLMFPLIFTD-- 464 (539)
Q Consensus 417 GkRKtA~A~V~--l~~~GsG~I~ING~~l~ey------------------F~~----------~~~Re~il~PL~~~~-- 464 (539)
|.-|++..++- ++.+.+|.|.|||.++.++ |+. ....+.+..-+..++
T Consensus 377 GsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~ 456 (592)
T PRK10790 377 GSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLA 456 (592)
T ss_pred CCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcH
Confidence 55566554431 2236789999999987532 211 111233334444332
Q ss_pred -----cCCcccEEEEeecCCcccHHHHHHHHHHHHHHc
Q psy6189 465 -----MLNKVDIVASVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 465 -----~~~k~DI~a~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
.-+.+|-.+.-.|...|| -+.=|+||||||+.
T Consensus 457 ~~i~~lp~Gldt~i~e~g~~LSG-GqrQRialARaLl~ 493 (592)
T PRK10790 457 ELARSLPDGLYTPLGEQGNNLSV-GQKQLLALARVLVQ 493 (592)
T ss_pred HHHHhccccccccccCCCCCCCH-HHHHHHHHHHHHHh
Confidence 224567776555555554 34458999999997
No 35
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=33.37 E-value=18 Score=38.76 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=18.3
Q ss_pred cccCcceEEEE--EEeecCeeEEEEcCcchh
Q psy6189 416 DCPRKCARADV--TVYQPGTGKITINEKHYF 444 (539)
Q Consensus 416 ~GkRKtA~A~V--~l~~~GsG~I~ING~~l~ 444 (539)
.|--|++--|+ -+-+|-+|+|.|||+++.
T Consensus 41 SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~ 71 (339)
T COG1135 41 SGAGKSTLLRLINLLERPTSGSVFVDGQDLT 71 (339)
T ss_pred CCCcHHHHHHHHhccCCCCCceEEEcCEecc
Confidence 35556655443 122467899999997763
No 36
>cd08643 DNA_pol_A_pol_I_B Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuclease. Pol I uses its 5
Probab=32.65 E-value=34 Score=37.78 Aligned_cols=34 Identities=26% Similarity=0.254 Sum_probs=27.2
Q ss_pred cCCCCCCceeeee-----eeccCCCCCCCCCCCCCCchhh
Q psy6189 141 FDNLGRPYHFLFY-----TARFSSKTPNPPDKPNEPSELA 175 (539)
Q Consensus 141 ~d~~grp~~~~fy-----t~~~~~~~~~~~~~~~~~s~~~ 175 (539)
+|++|| .|.-|. ||+.|++.||+--+|+..++.+
T Consensus 136 v~~dgR-IH~~~nq~gt~TGRlSss~PNLQnIP~~~~~~G 174 (429)
T cd08643 136 VHEDGR-IHGAVNTNGAVTGRATHFSPNMAQVPAVGSPYG 174 (429)
T ss_pred cCCCCc-eeeeEEeCCccccccccCCCcccCCCCCCcccc
Confidence 688899 666665 6999999999999997766544
No 37
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=32.41 E-value=16 Score=39.41 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=32.5
Q ss_pred cccCcceEEEE--EEeecCeeEEEEcCcchh----------------hhCCChHHHHHhhhHHHhh
Q psy6189 416 DCPRKCARADV--TVYQPGTGKITINEKHYF----------------DYFPDENDRQQLMFPLIFT 463 (539)
Q Consensus 416 ~GkRKtA~A~V--~l~~~GsG~I~ING~~l~----------------eyF~~~~~Re~il~PL~~~ 463 (539)
.|+-||..=|+ =+..+.+|+|.|||+++. -.||...-.+.|-+||.+-
T Consensus 40 SGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~ 105 (352)
T COG3842 40 SGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR 105 (352)
T ss_pred CCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc
Confidence 46667754332 122477899999999863 3577777778888888733
No 38
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=32.35 E-value=38 Score=34.91 Aligned_cols=87 Identities=22% Similarity=0.314 Sum_probs=45.9
Q ss_pred CCCCeeeecc-cccCcceEEEE--EEeecCeeEEEEcCcchh-------------------hhCCChHHHHHhhh-HHHh
Q psy6189 406 EDGVKFVTTK-DCPRKCARADV--TVYQPGTGKITINEKHYF-------------------DYFPDENDRQQLMF-PLIF 462 (539)
Q Consensus 406 e~Gra~vs~~-~GkRKtA~A~V--~l~~~GsG~I~ING~~l~-------------------eyF~~~~~Re~il~-PL~~ 462 (539)
+.|...+.+| .|--|+..=|| .|-.+.+|.|.|+|..+. +.||...-.+.|+. |..+
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v 105 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV 105 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence 3444443322 34445554433 222356899999996442 45776655444443 3333
Q ss_pred h------------------ccCCcccEEEEeecCCcccHHHHHHHHHHHHHHc
Q psy6189 463 T------------------DMLNKVDIVASVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 463 ~------------------~~~~k~DI~a~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
. ++..+.|.+-.--.|| |-+ |-||||||+-
T Consensus 106 ~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGG---QqQ--RVAIARALaM 153 (240)
T COG1126 106 KKLSKAEAREKALELLEKVGLADKADAYPAQLSGG---QQQ--RVAIARALAM 153 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcH---HHH--HHHHHHHHcC
Confidence 2 3344445443333333 333 8899999985
No 39
>PF13690 CheX: Chemotaxis phosphatase CheX; PDB: 3HM4_B 3H4Y_A 3H2D_A 3IIC_B.
Probab=31.57 E-value=36 Score=29.09 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=17.4
Q ss_pred hhHHHhhhCCCCCCCCHHHHHHHH
Q psy6189 224 RRHLANMMGRDVETFTQKDIDEAI 247 (539)
Q Consensus 224 KRhLAnMMGeDpe~fTqedIdrAI 247 (539)
.++||.+||+|.+. ++|++..|+
T Consensus 24 a~~la~~mg~~~~~-~~e~~~da~ 46 (94)
T PF13690_consen 24 AKKLASAMGEEEEE-DDEMVQDAL 46 (94)
T ss_dssp HHHHHHHHSSS-SS-HHHHHHHHH
T ss_pred HHHHHHHhCCCCcc-hhHHHHHHH
Confidence 35677788999888 888888887
No 40
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=30.86 E-value=49 Score=37.88 Aligned_cols=28 Identities=32% Similarity=0.249 Sum_probs=18.2
Q ss_pred cccEEEEeecCCcc-cHHHHHHHHHHHHHHc
Q psy6189 468 KVDIVASVREGGHS-GQAGAIRWGISWGLRN 497 (539)
Q Consensus 468 k~DI~a~V~GGG~s-GQA~AIrlAIArALv~ 497 (539)
.||-.+.-.|...| ||.+ |+||||||+.
T Consensus 577 G~dt~ige~G~~LSGGQrQ--RialARAll~ 605 (686)
T TIGR03797 577 GMHTVISEGGGTLSGGQRQ--RLLIARALVR 605 (686)
T ss_pred cccccccCCCCCCCHHHHH--HHHHHHHHhc
Confidence 45655544444444 4544 7889999998
No 41
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=30.23 E-value=33 Score=34.91 Aligned_cols=37 Identities=24% Similarity=0.482 Sum_probs=25.0
Q ss_pred ecCeeEEEEcCcchh----------------------hhCCChHHHHHhhhHHHhhccC
Q psy6189 430 QPGTGKITINEKHYF----------------------DYFPDENDRQQLMFPLIFTDML 466 (539)
Q Consensus 430 ~~GsG~I~ING~~l~----------------------eyF~~~~~Re~il~PL~~~~~~ 466 (539)
.+.+|.|.|||.++. ..++....+|.|+-|+.+.+..
T Consensus 56 ~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~ 114 (226)
T COG1136 56 KPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS 114 (226)
T ss_pred CCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC
Confidence 367799999997652 1224456778888888777543
No 42
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=27.91 E-value=80 Score=37.15 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=50.9
Q ss_pred cccCcceEEEE--EEeecCeeEEEEcCcchhhhCCChHHH------------------------------HHhhhHHHhh
Q psy6189 416 DCPRKCARADV--TVYQPGTGKITINEKHYFDYFPDENDR------------------------------QQLMFPLIFT 463 (539)
Q Consensus 416 ~GkRKtA~A~V--~l~~~GsG~I~ING~~l~eyF~~~~~R------------------------------e~il~PL~~~ 463 (539)
.|.-|+..++. -+..+-.|.|.+||.++ ..+.....| ++|+....++
T Consensus 508 SGsGKSTL~KLL~gly~p~~G~I~~dg~dl-~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~a 586 (709)
T COG2274 508 SGSGKSTLLKLLLGLYKPQQGRILLDGVDL-NDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLA 586 (709)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEEECCEeH-HhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 35556666553 12246679999999998 333333333 4455555555
Q ss_pred c-------cCCcccEEEEeecCCcc-cHHHHHHHHHHHHHHc
Q psy6189 464 D-------MLNKVDIVASVREGGHS-GQAGAIRWGISWGLRN 497 (539)
Q Consensus 464 ~-------~~~k~DI~a~V~GGG~s-GQA~AIrlAIArALv~ 497 (539)
+ +=..||-.+.=.|++.| ||-+ |+||||||+.
T Consensus 587 g~~~fI~~lP~gy~t~v~E~G~~LSGGQrQ--rlalARaLl~ 626 (709)
T COG2274 587 GAHEFIENLPMGYDTPVGEGGANLSGGQRQ--RLALARALLS 626 (709)
T ss_pred CcHHHHHhcccccccccccCCCCCCHHHHH--HHHHHHHhcc
Confidence 3 23567777777888886 5666 6788999987
No 43
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=27.52 E-value=1e+02 Score=27.79 Aligned_cols=57 Identities=16% Similarity=0.256 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHhhcCCCCCCccCCCCCCCCCccCCCCcccccCCCCCCCcccccc-CCcchHHHHHHHHHHHHHHHHH
Q psy6189 238 FTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYT-GKPNLYELFHNANVLIRKLNKM 314 (539)
Q Consensus 238 fTqedIdrAI~YLfPSgL~~k~ARP~MK~PeeifP~~k~~q~de~GRP~h~lFYT-GkP~YydlLhdi~~kL~~L~k~ 314 (539)
+|++||.+-|+||.-.|. .-++||.+++||...++.. +-|-|-. .+..+-|.+|+..
T Consensus 12 lt~~~i~~QI~yll~qG~------------------~~~lE~ad~~~~~~~yW~mwklP~f~~--~d~~~Vl~ei~~C 69 (99)
T cd03527 12 LTDEQIAKQIDYIISNGW------------------APCLEFTEPEHYDNRYWTMWKLPMFGC--TDPAQVLREIEAC 69 (99)
T ss_pred CCHHHHHHHHHHHHhCCC------------------EEEEEcccCCCCCCCEEeeccCCCCCC--CCHHHHHHHHHHH
Confidence 789999999999998886 3478999999998888887 5666553 2333345555554
No 44
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=26.36 E-value=1e+02 Score=36.34 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=37.4
Q ss_pred cCeeEEEEcCcchhhhCCChHHHHHhhhHHHhh-----------ccCCcccEEEEeecCCcccHHHHHHHHHHHHHHc
Q psy6189 431 PGTGKITINEKHYFDYFPDENDRQQLMFPLIFT-----------DMLNKVDIVASVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 431 ~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~-----------~~~~k~DI~a~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
+|.|++.|.|.+= ...++.+-..+.++ +.+..+||++.|.+|.....--+.-+|||-||++
T Consensus 623 ~G~~~~~~tG~~~------~~~kES~~~a~~~v~~~~~~~~~~~~~~~~~di~v~~~~g~~~k~Gpsa~laia~al~s 694 (775)
T TIGR00763 623 AGKGSLELTGQLG------DVMKESAQIALTYVRSIAADLGISPNFFEKADIHLHVPEGATPKDGPSAGITMATALLS 694 (775)
T ss_pred CCCceEEEeCCch------HHHHHHHHHHHHHHHHHHHHcCCCccccCCeEEEEEcCCcccCCCCCcchHHHHHHHHH
Confidence 7999999999643 23344443333322 1246789999999887764433444555555555
No 45
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=26.27 E-value=1.4e+02 Score=33.14 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=40.9
Q ss_pred eEEEEcCcchhhhCCChHHHHHhhhHH--Hhhc-cCCcccEEEEeecCCcccHHHHHHHHHHHHHHcc
Q psy6189 434 GKITINEKHYFDYFPDENDRQQLMFPL--IFTD-MLNKVDIVASVREGGHSGQAGAIRWGISWGLRNF 498 (539)
Q Consensus 434 G~I~ING~~l~eyF~~~~~Re~il~PL--~~~~-~~~k~DI~a~V~GGG~sGQA~AIrlAIArALv~~ 498 (539)
....+.|.+. .|..++..+ .-++ .+...||+|++. ||.--.--|.-+|||-||++-
T Consensus 326 p~~~~~G~~~--------~r~~~~~Avl~k~~g~~~~~~di~vNl~-ggl~~~~~~~DLaia~ailss 384 (454)
T TIGR00416 326 PRRVATGLDQ--------NRLALLLAVLEKRLGLPLADQDVFLNVA-GGVKVSEPAADLALLIAIVSS 384 (454)
T ss_pred CCEEEEcCcc--------HHHHHHHHHHHHhcCCCCCCceEEEEcc-CCcccCCccccHHHHHHHHHh
Confidence 4566666664 388888887 5555 467899999999 777666666777888887773
No 46
>PF13690 CheX: Chemotaxis phosphatase CheX; PDB: 3HM4_B 3H4Y_A 3H2D_A 3IIC_B.
Probab=26.24 E-value=52 Score=28.12 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=17.0
Q ss_pred hHHHhhhCCCCCCCCHHHHHHHHH
Q psy6189 87 RHLANMMGRDVETFTQKDIDEAIA 110 (539)
Q Consensus 87 r~la~mmg~d~~~f~~~di~~ai~ 110 (539)
+.||.+||+|.+. ++++++.|+.
T Consensus 25 ~~la~~mg~~~~~-~~e~~~da~~ 47 (94)
T PF13690_consen 25 KKLASAMGEEEEE-DDEMVQDALG 47 (94)
T ss_dssp HHHHHHHSSS-SS-HHHHHHHHHH
T ss_pred HHHHHHhCCCCcc-hhHHHHHHHH
Confidence 4567778999888 8888888774
No 47
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=25.40 E-value=1.4e+02 Score=27.42 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=49.5
Q ss_pred cCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhc-cCCcccEEEEeecCCcccHHHHHHHHHHHHHHcc
Q psy6189 431 PGTGKITINEKHYFDYFPDENDRQQLMFPLIFTD-MLNKVDIVASVREGGHSGQAGAIRWGISWGLRNF 498 (539)
Q Consensus 431 ~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~-~~~k~DI~a~V~GGG~sGQA~AIrlAIArALv~~ 498 (539)
+|--.+.|-|.+=.. ....|+.|...|.-++ .+...||.+++.+||.--+-.+.-+|||-||++-
T Consensus 7 ~Glp~~~ivGl~~~a---v~esr~Rv~~al~~~g~~~p~~~i~VNlap~~l~k~g~~~DLaIA~ailsa 72 (121)
T PF13541_consen 7 RGLPSFNIVGLPDTA---VKESRERVRSALKNSGFPFPNQDITVNLAPADLKKEGPAFDLAIAIAILSA 72 (121)
T ss_pred CCCCceEEecCchHH---HHHHHHHHHHHHHhcCCCCCcceeeeEEEeCCEEEeeeeehHHHHHHHHHh
Confidence 454456777766411 1347788888888876 4678899999999999888889999999999874
No 48
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=24.71 E-value=77 Score=35.21 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=17.9
Q ss_pred ccCcceEEEEE--EeecCeeEEEEcCcchh
Q psy6189 417 CPRKCARADVT--VYQPGTGKITINEKHYF 444 (539)
Q Consensus 417 GkRKtA~A~V~--l~~~GsG~I~ING~~l~ 444 (539)
|.-|++.+++- +..+.+|.|.+||.++.
T Consensus 354 GsGKSTL~~ll~g~~~~~~G~i~~~g~~i~ 383 (544)
T TIGR01842 354 GSGKSTLARLIVGIWPPTSGSVRLDGADLK 383 (544)
T ss_pred CCCHHHHHHHHhCCCCCCCceEEECCEehh
Confidence 44565554432 22467899999998864
No 49
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=23.55 E-value=68 Score=34.90 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=29.5
Q ss_pred HHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHH-HHHHHHHHHcc
Q psy6189 452 DRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAI-RWGISWGLRNF 498 (539)
Q Consensus 452 ~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AI-rlAIArALv~~ 498 (539)
.-..|...|..++..+ |||.|.++|||-..==-|- -..+|+||..+
T Consensus 177 A~~~i~~al~~~~~~~-~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~ 223 (438)
T PRK00286 177 AAASIVAAIERANARG-EDVLIVARGGGSLEDLWAFNDEAVARAIAAS 223 (438)
T ss_pred HHHHHHHHHHHhcCCC-CCEEEEecCCCCHHHhhccCcHHHHHHHHcC
Confidence 4456777887777666 9999999999953322111 23455555553
No 50
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=23.15 E-value=76 Score=35.19 Aligned_cols=24 Identities=29% Similarity=0.153 Sum_probs=19.2
Q ss_pred cccEEEEeecCCcccHHHHHHHHH
Q psy6189 468 KVDIVASVREGGHSGQAGAIRWGI 491 (539)
Q Consensus 468 k~DI~a~V~GGG~sGQA~AIrlAI 491 (539)
..+.++.|-|||..|-+-|+.+|-
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH
Confidence 445667788999999999988754
No 51
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=22.77 E-value=16 Score=37.87 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=47.3
Q ss_pred cccCcceEEEEE--EeecCeeEEEEcCcchhh-------------hCC--------ChHHHHHhhhHHHh----------
Q psy6189 416 DCPRKCARADVT--VYQPGTGKITINEKHYFD-------------YFP--------DENDRQQLMFPLIF---------- 462 (539)
Q Consensus 416 ~GkRKtA~A~V~--l~~~GsG~I~ING~~l~e-------------yF~--------~~~~Re~il~PL~~---------- 462 (539)
.|.-|++.|++- +.++-+|.|+++|+++.. .|+ ...-+..|.+|+.+
T Consensus 42 SGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i 121 (252)
T COG1124 42 SGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRI 121 (252)
T ss_pred CCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHH
Confidence 367788888763 224678999999975533 122 23456778888886
Q ss_pred hccCCcccEEE--------EeecCCcccHHHHHHHHHHHHHHc
Q psy6189 463 TDMLNKVDIVA--------SVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 463 ~~~~~k~DI~a--------~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
.+.+..+.+.. ..+|| | -=|.||||||+.
T Consensus 122 ~~~L~~VgL~~~~l~R~P~eLSGG----Q--~QRiaIARAL~~ 158 (252)
T COG1124 122 AELLDQVGLPPSFLDRRPHELSGG----Q--RQRIAIARALIP 158 (252)
T ss_pred HHHHHHcCCCHHHHhcCchhcChh----H--HHHHHHHHHhcc
Confidence 33343333322 23444 3 348899999986
No 52
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=22.06 E-value=1e+02 Score=28.88 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=24.3
Q ss_pred CCCCeeeecc-cccCcceEEEEE--EeecCeeEEEEcCcchhhh
Q psy6189 406 EDGVKFVTTK-DCPRKCARADVT--VYQPGTGKITINEKHYFDY 446 (539)
Q Consensus 406 e~Gra~vs~~-~GkRKtA~A~V~--l~~~GsG~I~ING~~l~ey 446 (539)
+.|..+.-+| .|--||+..++- +..+.+|+|.+||.++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~ 69 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL 69 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH
Confidence 3455442322 355577665541 1236689999999988543
No 53
>PLN03130 ABC transporter C family member; Provisional
Probab=21.56 E-value=99 Score=39.67 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=38.8
Q ss_pred ecCeeEEEEcCcchhhh-----------------------------CCChHHHHHhhhHHHhhcc-------CCcccEEE
Q psy6189 430 QPGTGKITINEKHYFDY-----------------------------FPDENDRQQLMFPLIFTDM-------LNKVDIVA 473 (539)
Q Consensus 430 ~~GsG~I~ING~~l~ey-----------------------------F~~~~~Re~il~PL~~~~~-------~~k~DI~a 473 (539)
.+.+|.|.|||+++.++ |. ....++|...+..++. -..+|-.+
T Consensus 1290 ~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~V 1368 (1622)
T PLN03130 1290 ELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEV 1368 (1622)
T ss_pred CCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCccc
Confidence 46779999999987432 11 1223445555554432 24667665
Q ss_pred EeecCCcccHHHHHHHHHHHHHHc
Q psy6189 474 SVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 474 ~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
.-.|...| .=+-=|+||||||+.
T Consensus 1369 ge~G~nLS-gGQrQrlaLARALLr 1391 (1622)
T PLN03130 1369 SEAGENFS-VGQRQLLSLARALLR 1391 (1622)
T ss_pred cCCCCCCC-HHHHHHHHHHHHHHc
Confidence 44343343 333448899999998
No 54
>PRK05589 peptide chain release factor 2; Provisional
Probab=21.26 E-value=79 Score=33.95 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=18.7
Q ss_pred cccCcceEEEEEEeecCe--eEEEEcCcch
Q psy6189 416 DCPRKCARADVTVYQPGT--GKITINEKHY 443 (539)
Q Consensus 416 ~GkRKtA~A~V~l~~~Gs--G~I~ING~~l 443 (539)
.|||+|+.|.|.|.+.-. -.|.||-.++
T Consensus 169 ~~rr~ts~a~V~VlP~~~~~~~~~i~~~dl 198 (325)
T PRK05589 169 NGKRQTSFASVEVLPELTDDQDIEIRSEDL 198 (325)
T ss_pred CCCeEeeeEEEEEecCcCccccccCCchhe
Confidence 489999999999984321 1355555554
No 55
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=20.92 E-value=1.4e+02 Score=34.22 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=19.5
Q ss_pred cccEEEEeecCCcccHHHHHHHHHHHHHHc
Q psy6189 468 KVDIVASVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 468 k~DI~a~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
.+|-.+.-.|...|| -+-=|+||||||+.
T Consensus 582 gl~t~i~~~g~~LSg-Gq~qri~lARall~ 610 (694)
T TIGR01846 582 GYNTEVGEKGANLSG-GQRQRIAIARALVG 610 (694)
T ss_pred ccCcEecCCCCCCCH-HHHHHHHHHHHHHh
Confidence 567766655555553 23348889999998
No 56
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=20.90 E-value=1.3e+02 Score=28.39 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=31.6
Q ss_pred CCcccEEEEeecCCcccHHHHHHHHHHHHHHccC-----------ChhhHHHHHHCCCcc
Q psy6189 466 LNKVDIVASVREGGHSGQAGAIRWGISWGLRNFV-----------EPEMRERMRLAGLLT 514 (539)
Q Consensus 466 ~~k~DI~a~V~GGG~sGQA~AIrlAIArALv~~v-----------~p~~k~~Lr~agLLt 514 (539)
-|++||.++++..+.+...-.|-.++++++...+ ++.....|+-.|.+.
T Consensus 58 RGkV~v~i~~~~~~~~~~~~~in~~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~ 117 (159)
T PF03755_consen 58 RGKVEVSIRVERSSESAVELRINEELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLK 117 (159)
T ss_pred cceEEEEEEEEECcccCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCccc
Confidence 4899999999998866665556566665555431 233444555566665
No 57
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=20.74 E-value=1.1e+02 Score=33.71 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=17.8
Q ss_pred cccEEEEeecCCcccHHHHHHHHHHHHHHc
Q psy6189 468 KVDIVASVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 468 k~DI~a~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
.+|-.+.-. |..-+.-+.=|+||||||+.
T Consensus 447 Gldt~v~e~-g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 447 GLDTLIGEG-GAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred cccchhccc-cccCCHHHHHHHHHHHHHhc
Confidence 356554333 33333344569999999997
No 58
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=20.27 E-value=88 Score=33.73 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=38.9
Q ss_pred CCCCeeeecc-cccCcceEEEE--EEeecCeeEEEEcCcchhh----------------hCCChHHHHHhhhHHHhh
Q psy6189 406 EDGVKFVTTK-DCPRKCARADV--TVYQPGTGKITINEKHYFD----------------YFPDENDRQQLMFPLIFT 463 (539)
Q Consensus 406 e~Gra~vs~~-~GkRKtA~A~V--~l~~~GsG~I~ING~~l~e----------------yF~~~~~Re~il~PL~~~ 463 (539)
++|.-++-.| .|+-||..=++ -+..+-+|.|.|+|+++.+ .||...-++.|.+||...
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~ 103 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR 103 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC
Confidence 5666554443 47777764332 2234678999999998744 466667788889999875
Done!