Query psy6189
Match_columns 539
No_of_seqs 281 out of 1185
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 19:59:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqe_I 30S ribosomal protein S 100.0 1.9E-48 6.4E-53 351.8 10.7 123 415-539 6-128 (128)
2 3r8n_I 30S ribosomal protein S 100.0 1E-48 3.6E-53 353.1 6.2 123 415-539 5-127 (127)
3 2xzm_I RPS16E; ribosome, trans 100.0 3.8E-46 1.3E-50 342.8 10.1 123 415-539 11-145 (145)
4 2zkq_i 40S ribosomal protein S 100.0 2.5E-46 8.5E-51 344.5 7.1 130 405-539 5-146 (146)
5 3u5c_Q RP61R, 40S ribosomal pr 100.0 1.3E-45 4.4E-50 338.9 11.6 124 414-539 8-143 (143)
6 3bbn_I Ribosomal protein S9; s 100.0 8.9E-46 3E-50 353.2 10.3 123 415-539 74-197 (197)
7 3j20_K 30S ribosomal protein S 100.0 2.2E-45 7.4E-50 334.6 10.8 124 414-539 5-135 (135)
8 3iz6_I 40S ribosomal protein S 100.0 3E-45 1E-49 338.4 -13.1 124 414-539 14-149 (149)
9 4f4c_A Multidrug resistance pr 42.6 16 0.00054 43.6 4.1 65 431-497 1131-1234(1321)
10 4f4c_A Multidrug resistance pr 38.8 24 0.00082 42.1 4.8 66 431-497 470-571 (1321)
11 2jrh_A Mitogen-activated prote 35.8 15 0.0005 31.5 1.7 16 238-253 55-70 (94)
12 2npt_B Mitogen-activated prote 33.8 17 0.00058 31.5 1.8 14 238-251 71-84 (100)
13 2c60_A Human mitogen-activated 33.0 17 0.00059 31.9 1.7 15 239-253 83-97 (111)
14 1c53_A Cytochrome C553; electr 30.8 16 0.00056 28.1 1.1 42 210-251 34-77 (79)
15 3kkj_A Amine oxidase, flavin-c 30.6 20 0.00068 30.7 1.8 20 472-491 4-23 (336)
16 2jrh_A Mitogen-activated prote 29.8 21 0.00072 30.6 1.7 14 100-113 55-68 (94)
17 2bwb_A Ubiquitin-like protein 28.6 15 0.00053 27.1 0.6 12 103-114 34-45 (46)
18 2npt_B Mitogen-activated prote 28.5 23 0.0008 30.7 1.8 13 100-112 71-83 (100)
19 2cu1_A Mitogen-activated prote 28.5 23 0.00078 30.9 1.7 15 239-253 60-74 (103)
20 2c60_A Human mitogen-activated 27.3 25 0.00084 30.9 1.7 13 101-113 83-95 (111)
21 2cu1_A Mitogen-activated prote 25.5 28 0.00094 30.4 1.7 14 101-114 60-73 (103)
22 2dna_A Unnamed protein product 25.5 19 0.00064 29.1 0.6 13 101-113 44-56 (67)
23 3fvb_A Bacterioferritin; niaid 25.1 86 0.0029 28.4 5.1 43 194-236 136-180 (182)
24 3qf4_A ABC transporter, ATP-bi 24.9 71 0.0024 34.5 5.2 29 468-497 468-496 (587)
25 3nh6_A ATP-binding cassette SU 24.1 58 0.002 32.5 4.0 29 468-497 179-207 (306)
26 1wr1_B Ubiquitin-like protein 22.6 23 0.00079 27.6 0.6 12 103-114 44-55 (58)
27 3m6a_A ATP-dependent protease 22.1 98 0.0034 33.0 5.6 48 425-479 373-431 (543)
28 1rre_A ATP-dependent protease 21.8 65 0.0022 30.4 3.7 47 431-480 35-89 (200)
29 3vrd_A FCCA subunit, flavocyto 20.6 34 0.0011 30.9 1.4 43 208-251 32-74 (174)
30 2zzs_A Cytochrome C554; C-type 20.4 39 0.0013 27.0 1.6 41 210-250 57-99 (103)
31 1xwr_A Regulatory protein CII; 20.3 26 0.00087 30.0 0.5 31 208-240 12-42 (97)
32 2dah_A Ubiquilin-3; UBA domain 20.1 28 0.00096 26.6 0.6 11 103-113 36-46 (54)
No 1
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...
Probab=100.00 E-value=1.9e-48 Score=351.80 Aligned_cols=123 Identities=38% Similarity=0.584 Sum_probs=121.1
Q ss_pred ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHHH
Q psy6189 415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWG 494 (539)
Q Consensus 415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIArA 494 (539)
++||||||+|+|+|. +|+|+|+|||+|+.+||++...|++|++||.+++.+++|||+|+|+|||.||||+|||||||||
T Consensus 6 ~~GrRKtavArv~l~-~G~G~i~VNg~~l~~yf~~~~~r~~v~~Pl~~~~~~~~~Di~v~V~GGG~sgQA~AiR~gIarA 84 (128)
T 2vqe_I 6 GTGRRKEAVARVFLR-PGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARA 84 (128)
T ss_dssp ECCEETTEEEEEEEE-ESSCCEEESSSBHHHHSSSCSSGGGGGHHHHHHTCSTTEEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred EeCcCCCEEEEEEEE-cCceEEEECCCcHHHHcCCHHHHHHHHhHHHHHcccCceeEEEEEEcCCeehHHHHHHHHHHHH
Confidence 689999999999995 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCChhhHHHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189 495 LRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 495 Lv~~v~p~~k~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
||.| ||++++.|+++||||+|||+|||||||++||||+||||||
T Consensus 85 L~~~-~~~~r~~Lk~~glLtrD~R~~ErKK~G~~kARk~~Q~SkR 128 (128)
T 2vqe_I 85 LVQY-NPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR 128 (128)
T ss_dssp HHHH-CGGGHHHHTTTTTTSCBCCCCCCCCSSSSBTTBCCCCCCC
T ss_pred HHHH-CHHHHHHHHHCCCccCCccccCcCcCCCcccccccccccC
Confidence 9999 9999999999999999999999999999999999999998
No 2
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 3j18_I* 2wwl_I 3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I 4gd1_I 4gd2_I 2qal_I* 1p6g_I 1p87_I ...
Probab=100.00 E-value=1e-48 Score=353.05 Aligned_cols=123 Identities=42% Similarity=0.669 Sum_probs=121.2
Q ss_pred ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHHH
Q psy6189 415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWG 494 (539)
Q Consensus 415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIArA 494 (539)
++||||+|+|+|+|. +|+|+|+|||+|+.+||++..+|++|++||.+++.+++|||+|+|+|||.||||+|||||||||
T Consensus 5 ~~GrRKtavArv~l~-~G~G~i~VNg~~l~~yf~~~~~r~~v~~Pl~~~~~~~~~Di~v~V~GGG~~gQa~Air~aIarA 83 (127)
T 3r8n_I 5 GTGRRKSSAARVFIK-PGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRA 83 (127)
T ss_dssp ECCCCTTCEEEEEEE-ESCSCEEETTBCSTTTTTTSTTTTTTTGGGSSSCCSSSEEEEEEEESSCHHHHHHHHHHHHHTT
T ss_pred eECCCeeEEEEEEEE-eCcEEEEECCEeHHHHcCCHHHHHHHHHHHHHhCccCccceEEEEECCCeecHHHHHHHHHHHH
Confidence 789999999999995 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCChhhHHHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189 495 LRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 495 Lv~~v~p~~k~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
||.| ||++++.|+++||||+|||+|||||||++||||+||||||
T Consensus 84 L~~~-d~~~r~~Lk~~glLtrD~R~~ErKK~G~~kARk~~Q~SkR 127 (127)
T 3r8n_I 84 LMEY-DESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR 127 (127)
T ss_dssp TTTT-CSSSTTTTTTTTTTSCCCCCCCCCCTTSSBTTBCCCCCCC
T ss_pred HHHH-CHHHHHHHHHCCCcccCCcccccCcCCCccccccccccCC
Confidence 9999 9999999999999999999999999999999999999998
No 3
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I
Probab=100.00 E-value=3.8e-46 Score=342.84 Aligned_cols=123 Identities=27% Similarity=0.321 Sum_probs=119.4
Q ss_pred ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhc--cCCcccEEEEeecCCcccHHHHHHHHHH
Q psy6189 415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTD--MLNKVDIVASVREGGHSGQAGAIRWGIS 492 (539)
Q Consensus 415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~--~~~k~DI~a~V~GGG~sGQA~AIrlAIA 492 (539)
++||||||+|+|+|. +|+|+|+|||+|+. ||++...|++|++||.+++ .+++|||+|+|+|||.||||+|||||||
T Consensus 11 ~~GrRKtAvArv~l~-~G~G~i~VNg~~l~-yf~~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~aIA 88 (145)
T 2xzm_I 11 TFGRKKNAVAVASVR-PGKGLLKVNGSPID-MINPQILQAKIYEPILLLGQQKFANLDIRIRVRGSGYTSQVYAIRQALS 88 (145)
T ss_dssp EEEEETTEEEEEEEE-ESSCEEEESSSBGG-GCSSTTTHHHHHHHHHHHCHHHHHHEEEEEEECCSSHHHHHHHHHHHHH
T ss_pred EEeECCCEEEEEEEE-eCceEEEECCEeHH-HcCcHHHHHHHHHHHHHhChhhhCceeEEEEEEcCCeecHHHHHHHHHH
Confidence 789999999999996 99999999999995 9999999999999999998 8999999999999999999999999999
Q ss_pred HHHHccC----ChhhHHHHHHC------CCcccCCCccccCCCCcccccccccccCC
Q psy6189 493 WGLRNFV----EPEMRERMRLA------GLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 493 rALv~~v----~p~~k~~Lr~a------gLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
||||.|+ ||++++.||++ ||||+|||+|||||||++||||+||||||
T Consensus 89 rAL~~~~~k~~d~~~r~~Lk~~l~~ydrglLtrD~R~~ErKK~G~~kARk~~Q~SkR 145 (145)
T 2xzm_I 89 KGIVAYHAKYVDENSKREIKEQLMQYDRSLLVADPRRMEPKKCGGRGARSKMQKAYR 145 (145)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHCSTTTSCBCCCCCCCCTTSSSSSCCCCCCCC
T ss_pred HHHHHHhhhcCCHHHHHHHHHHHhhcCCCcCcCCCcccccCcCCCcccccccccccC
Confidence 9999984 89999999998 99999999999999999999999999998
No 4
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.5e-46 Score=344.54 Aligned_cols=130 Identities=28% Similarity=0.328 Sum_probs=120.6
Q ss_pred CCCCCeeeecccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhc--cCCcccEEEEeecCCccc
Q psy6189 405 GEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTD--MLNKVDIVASVREGGHSG 482 (539)
Q Consensus 405 De~Gra~vs~~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~--~~~k~DI~a~V~GGG~sG 482 (539)
+..++.+ ++||||||+|+|+|. +|+|+|+|||+|+ +||++...|++|++||.+++ .+++|||+|+|+|||.||
T Consensus 5 ~~~~~~~---~~GrRKtAvArv~l~-~G~G~i~VNg~~l-eyf~~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sg 79 (146)
T 2zkq_i 5 GPLQSVQ---VFGRKKTATAVAHCK-RGNGLIKVNGRPL-EMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVA 79 (146)
T ss_dssp ---CCEE---ECCBCSSCEEEEEEE-ESSSCEEETTEEH-HHHSTTSCCGGGGHHHHHTSSCTTSSEEEEEEEESSCHHH
T ss_pred CCCceEE---EEeeCCCeEEEEEEE-cCCeeEEEcCcCH-HHcCcHHHHHHHHHHHHHhCccccCceEEEEEEEcCCeeh
Confidence 3456666 789999999999995 9999999999999 99999999999999999998 579999999999999999
Q ss_pred HHHHHHHHHHHHHHcc----CChhhHHHHHHC------CCcccCCCccccCCCCcccccccccccCC
Q psy6189 483 QAGAIRWGISWGLRNF----VEPEMRERMRLA------GLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 483 QA~AIrlAIArALv~~----v~p~~k~~Lr~a------gLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
||+|||||||||||.| +||++++.|+++ ||||+|||+|||||||++||||+||||||
T Consensus 80 QA~AiR~aIArAL~~~~~k~~d~~~r~~Lk~~~~~ydrglLtrD~R~~ErKK~G~~kARk~~Q~SkR 146 (146)
T 2zkq_i 80 QIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146 (146)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTTSSSCCCCCSCSSSCCCCCC-CCCCCCCCCCTTSTTSSCCCCCSCC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcCCCcccCCCcccccCcCCCcccccccccccC
Confidence 9999999999999998 489999999998 99999999999999999999999999998
No 5
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=100.00 E-value=1.3e-45 Score=338.90 Aligned_cols=124 Identities=32% Similarity=0.403 Sum_probs=117.6
Q ss_pred cccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhcc--CCcccEEEEeecCCcccHHHHHHHHH
Q psy6189 414 TKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDM--LNKVDIVASVREGGHSGQAGAIRWGI 491 (539)
Q Consensus 414 ~~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~--~~k~DI~a~V~GGG~sGQA~AIrlAI 491 (539)
.++||||||+|+|+|. +|+|+|+|||+|+.+||+. .+|++|++||.+++. +++|||+|+|+|||.||||+||||||
T Consensus 8 ~~~GrRKtAvArv~l~-~G~G~i~VNg~~l~~y~~~-~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~aI 85 (143)
T 3u5c_Q 8 QTFGKKKSATAVAHVK-AGKGLIKVNGSPITLVEPE-ILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAI 85 (143)
T ss_dssp EEEECSTTCEEEEEEE-ECSCCEEETTEETTTCSSC-STHHHHHHHHHHTCSTTSTTEEEEEEEESSCHHHHHHHHHHHH
T ss_pred EEeccCcceEEEEEEE-eCceEEEECCCcHHHHChH-HHHHHHHHHHHHHhhhccCceeEEEEEECCCEecHHhHHHHHH
Confidence 3689999999999996 9999999999999888875 689999999999975 69999999999999999999999999
Q ss_pred HHHHHcc----CChhhHHHHHHC------CCcccCCCccccCCCCcccccccccccCC
Q psy6189 492 SWGLRNF----VEPEMRERMRLA------GLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 492 ArALv~~----v~p~~k~~Lr~a------gLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
|||||.| +||+.++.||++ ||||+|||+|||||||++||||+||||||
T Consensus 86 ArAL~~~~~~~vd~~~r~~LK~~l~~yD~glLtrD~R~~ErKK~G~~kARk~~Q~SkR 143 (143)
T 3u5c_Q 86 AKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR 143 (143)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCSSTTSCCCCCCCCCCSSSSSSSCCCCCCCC
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHhccCCCCcCCCcccccCCCCCcccccccccccC
Confidence 9999996 689999999987 99999999999999999999999999998
No 6
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=8.9e-46 Score=353.21 Aligned_cols=123 Identities=37% Similarity=0.483 Sum_probs=118.3
Q ss_pred ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCCh-HHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHH
Q psy6189 415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDE-NDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISW 493 (539)
Q Consensus 415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~-~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIAr 493 (539)
++||||+|+|+|||+ +|+|+|+|||+|+.+||+.. ..+++|++||.+++.+++|||+|+|+|||.||||+||||||||
T Consensus 74 ~tGRRKtAvArV~l~-~G~G~I~VNg~~l~~YF~~~~~~~~~v~~PL~l~~~~~k~DI~v~V~GGG~sGQA~AIR~gIAR 152 (197)
T 3bbn_I 74 GTGRRKCAIARVVLQ-EGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQAISLGVAR 152 (197)
T ss_dssp CCCEETTEEEEEEEE-ESSCCEEETTEEHHHHSCSCCGGGTTTSHHHHTTTCTTTEEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred EEeeCCceEEEEEEE-cCceeEEECCCcHHHHcCccHHHHHHHHHHHHHhCccCceeEEEEEecCCeehHHHHHHHHHHH
Confidence 789999999999996 99999999999999999754 4457999999999999999999999999999999999999999
Q ss_pred HHHccCChhhHHHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189 494 GLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 494 ALv~~v~p~~k~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
|||.| +|++++.|+++||||+|+|+|||||||++||||+||||||
T Consensus 153 ALv~~-~~~~r~~LK~~GlLTrD~R~~ERKK~G~kkARk~~Q~SKR 197 (197)
T 3bbn_I 153 ALLKV-SASHRAPLKQEGLLTRDSRIVERKKPGLKKARKAPQFSKR 197 (197)
T ss_dssp HTTTS-CGGGSHHHHTTTCSSCCCCCCCCCCTTSSSTTCCCCCCCC
T ss_pred HHHHH-CHHHHHHHHHCCCccCCCcccccCcCCcccccccccccCC
Confidence 99999 9999999999999999999999999999999999999998
No 7
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.2e-45 Score=334.59 Aligned_cols=124 Identities=31% Similarity=0.389 Sum_probs=117.3
Q ss_pred cccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhc--cCCcccEEEEeecCCcccHHHHHHHHH
Q psy6189 414 TKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTD--MLNKVDIVASVREGGHSGQAGAIRWGI 491 (539)
Q Consensus 414 ~~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~--~~~k~DI~a~V~GGG~sGQA~AIrlAI 491 (539)
.++||||||+|+|+|. +|+|+|+|||+|+..|| +..+|++|++||.+++ .+++|||+|+|+|||.||||+||||||
T Consensus 5 ~~~GrRKtAvArv~l~-~G~G~i~VNg~~l~~y~-~~~~r~~i~~Pl~l~~~~~~~~~Di~v~V~GGG~~gQA~AiR~aI 82 (135)
T 3j20_K 5 QTTGKRKTAIARAVIR-EGKGRVRINGKPVEIIE-PEIARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEAARMAI 82 (135)
T ss_dssp EEEEEETTEEEEEEEE-ESSCCEEETTEEGGGCS-CSHHHHHHSHHHHHHCHHHHHHEEEEEEEECSCHHHHHHHHHHHH
T ss_pred EEeCcCccEEEEEEEE-eCceEEEECCeeHHHHC-hHHHHHHhhCChhhcchhhcccccEEEEEECCCEechHhHHHHHH
Confidence 4789999999999996 99999999999995555 5789999999999998 999999999999999999999999999
Q ss_pred HHHHHccC-ChhhHHHHHH--CCCcccCCCccccCCCCc--ccccccccccCC
Q psy6189 492 SWGLRNFV-EPEMRERMRL--AGLLTRDFRRKERKKPGQ--ARARKKFTWKKR 539 (539)
Q Consensus 492 ArALv~~v-~p~~k~~Lr~--agLLtrDpR~vERKK~G~--~kARk~~qwsKR 539 (539)
|||||+|. +|++++.|+. +||||+|||+|||||||+ +||||+||||||
T Consensus 83 arAL~~~~~~~~lr~~l~~~d~glLtrD~R~~ErKK~G~~~~kARk~~Q~SkR 135 (135)
T 3j20_K 83 ARALVEWTGDMSLKEKFMKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135 (135)
T ss_dssp HHHHHHHHCCHHHHHHHHHHCSTTTCCCSCCCCCCCCCSSCSSSSCCCCCCCC
T ss_pred HHHHHHhccCHHHHHHHHhccCCCccCCCccccccccCCCCCCCccccccccC
Confidence 99999995 4899999997 899999999999999999 999999999998
No 8
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3e-45 Score=338.36 Aligned_cols=124 Identities=29% Similarity=0.321 Sum_probs=108.3
Q ss_pred cccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhcc--CCcccEEEEeecCCcccHHHHHHHHH
Q psy6189 414 TKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDM--LNKVDIVASVREGGHSGQAGAIRWGI 491 (539)
Q Consensus 414 ~~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~--~~k~DI~a~V~GGG~sGQA~AIrlAI 491 (539)
.++||||||+|+|+|. +|+|+|+|||+|+.+||+. .+|++|++||.+++. +++|||+|+|+|||.||||+||||||
T Consensus 14 ~~~GrRKtAvArv~l~-~G~G~i~VNg~~l~~y~~~-~~r~~v~~Pl~l~~~~~~~~~DI~v~V~GGG~sgQA~AiR~gI 91 (149)
T 3iz6_I 14 QCFGRKKTAVAVSYCK-PGRGLIKVNGVPIELIRPE-MLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAI 91 (149)
T ss_dssp ----------CCCCCC-CCCCSSSEECCCCCCSSCC-EEESSSBHHHHTCSCHHHHHHHTTTTTTSCSTTCCEEECEESS
T ss_pred EEeccCcceEEEEEEE-eCcEEEEECCCcHHHHChH-HHHHHHHHHHHHHhHhccCceeEEEEEeCCCeecHHHHHHHHH
Confidence 3689999999999996 9999999999999999885 689999999999974 69999999999999999999999999
Q ss_pred HHHHHcc----CChhhHHHHHHC------CCcccCCCccccCCCCcccccccccccCC
Q psy6189 492 SWGLRNF----VEPEMRERMRLA------GLLTRDFRRKERKKPGQARARKKFTWKKR 539 (539)
Q Consensus 492 ArALv~~----v~p~~k~~Lr~a------gLLtrDpR~vERKK~G~~kARk~~qwsKR 539 (539)
|||||.| +||+.++.||++ ||||+|||+|||||||++||||+||||||
T Consensus 92 ArALv~~~~~~vd~~~r~~LK~~l~~yD~glLtrD~R~~ERKK~G~~kARk~~Q~SkR 149 (149)
T 3iz6_I 92 AKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149 (149)
T ss_dssp CTTTHHHHHHHHHHHHHHHHCSSTHHHHTTTCCCCCCCCSCCCCCTTBSSSSSBCSCC
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHhccCCCCcCCCcccccCCCCCcccccccccccC
Confidence 9999997 588899999987 99999999999999999999999999998
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=42.62 E-value=16 Score=43.60 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=41.2
Q ss_pred cCeeEEEEcCcchhhh------------------CC-------------ChHHHHHhhhHHHhhc-------cCCcccEE
Q psy6189 431 PGTGKITINEKHYFDY------------------FP-------------DENDRQQLMFPLIFTD-------MLNKVDIV 472 (539)
Q Consensus 431 ~GsG~I~ING~~l~ey------------------F~-------------~~~~Re~il~PL~~~~-------~~~k~DI~ 472 (539)
+-+|.|.|||+++.++ |. .....++|.+.+..++ +-+.||-.
T Consensus 1131 p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~ 1210 (1321)
T 4f4c_A 1131 TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETR 1210 (1321)
T ss_dssp CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSE
T ss_pred CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCE
Confidence 5679999999987432 11 1122344555555543 23568877
Q ss_pred EEeecCCcc-cHHHHHHHHHHHHHHc
Q psy6189 473 ASVREGGHS-GQAGAIRWGISWGLRN 497 (539)
Q Consensus 473 a~V~GGG~s-GQA~AIrlAIArALv~ 497 (539)
|.-+|...| ||.+ |+||||||+.
T Consensus 1211 vge~G~~LSgGQrQ--riaiARAllr 1234 (1321)
T 4f4c_A 1211 VGDRGTQLSGGQKQ--RIAIARALVR 1234 (1321)
T ss_dssp ETTTSCSSCHHHHH--HHHHHHHHHS
T ss_pred ecCCCcccCHHHHH--HHHHHHHHHh
Confidence 755554454 5665 8999999997
No 10
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=38.77 E-value=24 Score=42.06 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=44.6
Q ss_pred cCeeEEEEcCcchhhh----------------------------CCC-hHHHHHhhhHHHhhc-------cCCcccEEEE
Q psy6189 431 PGTGKITINEKHYFDY----------------------------FPD-ENDRQQLMFPLIFTD-------MLNKVDIVAS 474 (539)
Q Consensus 431 ~GsG~I~ING~~l~ey----------------------------F~~-~~~Re~il~PL~~~~-------~~~k~DI~a~ 474 (539)
+-+|.|.|||+++.++ |.. ....+.+...+..++ +-+.||-.|-
T Consensus 470 ~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vG 549 (1321)
T 4f4c_A 470 VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVG 549 (1321)
T ss_dssp CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEES
T ss_pred cccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEec
Confidence 4578999999887432 322 234566666666653 3367888887
Q ss_pred eecCCcccHHHHHHHHHHHHHHc
Q psy6189 475 VREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 475 V~GGG~sGQA~AIrlAIArALv~ 497 (539)
-+|...||=-.. |.||||||+.
T Consensus 550 e~G~~LSGGQkQ-RiaiARAl~~ 571 (1321)
T 4f4c_A 550 DRGTQLSGGQKQ-RIAIARALVR 571 (1321)
T ss_dssp SSSCCCCHHHHH-HHHHHHHHTT
T ss_pred CCCCCCCHHHHH-HHHHHHHHcc
Confidence 777777653322 9999999987
No 11
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=35.81 E-value=15 Score=31.54 Aligned_cols=16 Identities=44% Similarity=0.449 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHhhcCC
Q psy6189 238 FTQKDIDEAIAYLMPS 253 (539)
Q Consensus 238 fTqedIdrAI~YLfPS 253 (539)
=+|+|+|+||++|==|
T Consensus 55 ~~Q~DLDkAvelLDrs 70 (94)
T 2jrh_A 55 KNQDDLDKAIDILDRS 70 (94)
T ss_dssp CSHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHhccC
Confidence 3899999999997444
No 12
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=33.80 E-value=17 Score=31.53 Aligned_cols=14 Identities=43% Similarity=0.558 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHhhc
Q psy6189 238 FTQKDIDEAIAYLM 251 (539)
Q Consensus 238 fTqedIdrAI~YLf 251 (539)
=+|+|+|+||++|=
T Consensus 71 ~~Q~DLDkAvelLD 84 (100)
T 2npt_B 71 TTQDDLDKAVELLD 84 (100)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhc
Confidence 48999999999973
No 13
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=33.04 E-value=17 Score=31.89 Aligned_cols=15 Identities=47% Similarity=0.552 Sum_probs=12.7
Q ss_pred CHHHHHHHHHhhcCC
Q psy6189 239 TQKDIDEAIAYLMPS 253 (539)
Q Consensus 239 TqedIdrAI~YLfPS 253 (539)
+|+|+|+||+.|==|
T Consensus 83 ~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 83 NQDDLDKAIDILDRS 97 (111)
T ss_dssp SHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHhccC
Confidence 999999999997433
No 14
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=30.82 E-value=16 Score=28.12 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhhhhhHH--HhhhCCCCCCCCHHHHHHHHHhhc
Q psy6189 210 TSFMEGEKHSYEVGRRHL--ANMMGRDVETFTQKDIDEAIAYLM 251 (539)
Q Consensus 210 ~~fm~~q~~ey~iGKRhL--AnMMGeDpe~fTqedIdrAI~YLf 251 (539)
.+++..++..|.-|.|.- ..+|-.=...+|++||..-++||-
T Consensus 34 ~~~~~~~l~~~~~g~~~~~~~~~Mp~~~~~Ls~~ei~~l~~Yl~ 77 (79)
T 1c53_A 34 ADELFKKLKGYADGSYGGEKKAVMTNLVKRYSDEEMKAMADYMS 77 (79)
T ss_pred HHHHHHHHHHHHcCCCCCCcccchHHHHhhCCHHHHHHHHHHHH
Confidence 456667777888887642 234543335799999999999983
No 15
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=30.65 E-value=20 Score=30.72 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=16.3
Q ss_pred EEEeecCCcccHHHHHHHHH
Q psy6189 472 VASVREGGHSGQAGAIRWGI 491 (539)
Q Consensus 472 ~a~V~GGG~sGQA~AIrlAI 491 (539)
.|.|-|||++|-+-|+.+|=
T Consensus 4 dV~IIGaGpaGL~aA~~La~ 23 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTA 23 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 46677999999999988753
No 16
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=29.80 E-value=21 Score=30.59 Aligned_cols=14 Identities=43% Similarity=0.482 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHhhc
Q psy6189 100 FTQKDIDEAIAYLM 113 (539)
Q Consensus 100 f~~~di~~ai~yl~ 113 (539)
-+|+|+|+||+.|=
T Consensus 55 ~~Q~DLDkAvelLD 68 (94)
T 2jrh_A 55 KNQDDLDKAIDILD 68 (94)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhc
Confidence 48999999999974
No 17
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=28.58 E-value=15 Score=27.13 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=10.2
Q ss_pred HHHHHHHHhhcC
Q psy6189 103 KDIDEAIAYLMP 114 (539)
Q Consensus 103 ~di~~ai~yl~p 114 (539)
-||++||+|||-
T Consensus 34 gnv~~Ave~L~~ 45 (46)
T 2bwb_A 34 GSVQGALDSLLN 45 (46)
T ss_dssp TCHHHHHHHHHC
T ss_pred CCHHHHHHHHHc
Confidence 379999999983
No 18
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=28.49 E-value=23 Score=30.66 Aligned_cols=13 Identities=46% Similarity=0.677 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHhh
Q psy6189 100 FTQKDIDEAIAYL 112 (539)
Q Consensus 100 f~~~di~~ai~yl 112 (539)
-+|+|+|+||+.|
T Consensus 71 ~~Q~DLDkAvelL 83 (100)
T 2npt_B 71 TTQDDLDKAVELL 83 (100)
T ss_dssp CCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHh
Confidence 4899999999986
No 19
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=28.46 E-value=23 Score=30.93 Aligned_cols=15 Identities=47% Similarity=0.598 Sum_probs=12.7
Q ss_pred CHHHHHHHHHhhcCC
Q psy6189 239 TQKDIDEAIAYLMPS 253 (539)
Q Consensus 239 TqedIdrAI~YLfPS 253 (539)
+|||+|+||+.|==|
T Consensus 60 sQeDLDkaIellDrs 74 (103)
T 2cu1_A 60 TQDDLDKAVELLDRS 74 (103)
T ss_dssp SHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHccC
Confidence 899999999996444
No 20
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=27.27 E-value=25 Score=30.92 Aligned_cols=13 Identities=46% Similarity=0.603 Sum_probs=11.8
Q ss_pred CHHHHHHHHHhhc
Q psy6189 101 TQKDIDEAIAYLM 113 (539)
Q Consensus 101 ~~~di~~ai~yl~ 113 (539)
+|+|+|+||+.|=
T Consensus 83 ~Q~DLDkAvelLD 95 (111)
T 2c60_A 83 NQDDLDKAIDILD 95 (111)
T ss_dssp SHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhc
Confidence 8999999999973
No 21
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=25.53 E-value=28 Score=30.42 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=12.2
Q ss_pred CHHHHHHHHHhhcC
Q psy6189 101 TQKDIDEAIAYLMP 114 (539)
Q Consensus 101 ~~~di~~ai~yl~p 114 (539)
+|+|+|+||+.|==
T Consensus 60 sQeDLDkaIellDr 73 (103)
T 2cu1_A 60 TQDDLDKAVELLDR 73 (103)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcc
Confidence 89999999998643
No 22
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.49 E-value=19 Score=29.13 Aligned_cols=13 Identities=38% Similarity=0.342 Sum_probs=11.1
Q ss_pred CHHHHHHHHHhhc
Q psy6189 101 TQKDIDEAIAYLM 113 (539)
Q Consensus 101 ~~~di~~ai~yl~ 113 (539)
|.-||++||+|||
T Consensus 44 t~Gnve~Ave~L~ 56 (67)
T 2dna_A 44 TDGDTNAAIYKLK 56 (67)
T ss_dssp TTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 4458999999999
No 23
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}
Probab=25.12 E-value=86 Score=28.42 Aligned_cols=43 Identities=14% Similarity=0.002 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHhhhh--hHHHhhhCCCCC
Q psy6189 194 KVSKAMQAYLKRAEDYTSFMEGEKHSYEVGR--RHLANMMGRDVE 236 (539)
Q Consensus 194 ~~skAm~~yl~~~~~~~~fm~~q~~ey~iGK--RhLAnMMGeDpe 236 (539)
.++.-+..+++.++.|..|+.+++...+.-- .|||..||..|+
T Consensus 136 ~t~~~L~~il~eEe~h~~~l~~~l~~i~~~g~~~yl~~~~~~~~~ 180 (182)
T 3fvb_A 136 VSKQLFDELLADEEGHIDFLETQLDLLAKIGGERYGQLNAAPADE 180 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHcccCCC
Confidence 4567788899999999999999999887444 999999998775
No 24
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=24.94 E-value=71 Score=34.45 Aligned_cols=29 Identities=21% Similarity=0.137 Sum_probs=19.7
Q ss_pred cccEEEEeecCCcccHHHHHHHHHHHHHHc
Q psy6189 468 KVDIVASVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 468 k~DI~a~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
.+|-.+.-+|+..|| =+.=|.||||||+.
T Consensus 468 g~~~~~~~~~~~LSg-GqrQrv~lARal~~ 496 (587)
T 3qf4_A 468 GYDSRVERGGRNFSG-GQKQRLSIARALVK 496 (587)
T ss_dssp GGGCEECSSSCSSCH-HHHHHHHHHHHHHT
T ss_pred chhhHhcCCCCCcCH-HHHHHHHHHHHHHc
Confidence 566666555655554 23448999999987
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=24.11 E-value=58 Score=32.54 Aligned_cols=29 Identities=17% Similarity=0.038 Sum_probs=18.6
Q ss_pred cccEEEEeecCCcccHHHHHHHHHHHHHHc
Q psy6189 468 KVDIVASVREGGHSGQAGAIRWGISWGLRN 497 (539)
Q Consensus 468 k~DI~a~V~GGG~sGQA~AIrlAIArALv~ 497 (539)
.+|-.+.-.|...|| =+.=|+||||||+.
T Consensus 179 gl~t~~~~~g~~LSG-GqrQRvaiARAL~~ 207 (306)
T 3nh6_A 179 GYRTQVGERGLKLSG-GEKQRVAIARTILK 207 (306)
T ss_dssp GGGCEESTTSBCCCH-HHHHHHHHHHHHHH
T ss_pred hhhhHhcCCcCCCCH-HHHHHHHHHHHHHh
Confidence 456555545555553 23358999999987
No 26
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=22.63 E-value=23 Score=27.59 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=10.3
Q ss_pred HHHHHHHHhhcC
Q psy6189 103 KDIDEAIAYLMP 114 (539)
Q Consensus 103 ~di~~ai~yl~p 114 (539)
-||++||+|||-
T Consensus 44 gnve~Ave~L~~ 55 (58)
T 1wr1_B 44 GSVQGALDSLLN 55 (58)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 389999999984
No 27
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=22.07 E-value=98 Score=33.05 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=29.3
Q ss_pred EEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHh-------hc----cCCcccEEEEeecCC
Q psy6189 425 DVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIF-------TD----MLNKVDIVASVREGG 479 (539)
Q Consensus 425 ~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~-------~~----~~~k~DI~a~V~GGG 479 (539)
.|.+. +|.|.+++.|.+= ...++.....+.. ++ .+..+||+++|-||.
T Consensus 373 e~~~~-~g~~~~~~~G~~~------~~~~es~~~a~~~v~~~~~~~g~~~~~~~~~di~v~~~~g~ 431 (543)
T 3m6a_A 373 EVSLS-PGKGKLILTGKLG------DVMRESAQAAFSYVRSKTEELGIEPDFHEKYDIHIHVPEGA 431 (543)
T ss_dssp EEEEE-SSCSCEEEEESCC------HHHHHHHHHHHHHHTSSCGGGSSCSSCTTTCEEEEEECTTB
T ss_pred EEEee-CCCCceEEecCch------HHHHHHHHHHHHHHHHHHHHcCCCccccCCcceEEEeCCCC
Confidence 34443 7999999999753 2233333222221 12 256889999999984
No 28
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB: 1rr9_A*
Probab=21.79 E-value=65 Score=30.39 Aligned_cols=47 Identities=26% Similarity=0.318 Sum_probs=29.5
Q ss_pred cCeeEEEEcCcchhhhCCChHHHHHhhhHHH----hhc----cCCcccEEEEeecCCc
Q psy6189 431 PGTGKITINEKHYFDYFPDENDRQQLMFPLI----FTD----MLNKVDIVASVREGGH 480 (539)
Q Consensus 431 ~GsG~I~ING~~l~eyF~~~~~Re~il~PL~----~~~----~~~k~DI~a~V~GGG~ 480 (539)
+|.|.+.+.|.+= +-. ...++.+..-+. -.+ .+..+||++++-||..
T Consensus 35 ~G~g~~~itG~~~-~~~--kES~~~a~s~~~~~~~~~g~~~~~~~~~di~vnl~~g~~ 89 (200)
T 1rre_A 35 PGKGKLTYTGSLG-EVM--QESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGAT 89 (200)
T ss_dssp ECSSCEEEESSBC-HHH--HHHHHHHHHHHHHTHHHHTCCTTTTTSEEEEEECSSTTS
T ss_pred CCCceEEEecCch-HHH--HHHHHHHHHHHHHhHHhcCCCcccCCcceEEEEeCCccc
Confidence 7999999999653 211 123444444444 222 2678999999988754
No 29
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=20.55 E-value=34 Score=30.88 Aligned_cols=43 Identities=14% Similarity=0.245 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHhhhhhHHHhhhCCCCCCCCHHHHHHHHHhhc
Q psy6189 208 DYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLM 251 (539)
Q Consensus 208 ~~~~fm~~q~~ey~iGKRhLAnMMGeDpe~fTqedIdrAI~YLf 251 (539)
.+.++|.+++..|.-|.|.-+-| ..-...+|.+||+.-..|+-
T Consensus 32 ~~~~~i~~~l~~~~~g~~~~~~M-~~~~~~Ls~~di~~la~Y~~ 74 (174)
T 3vrd_A 32 MDPAVFVEVMEQFKSGEIQSTIM-GRIAKGYSTADFQKMAEYFK 74 (174)
T ss_dssp CCHHHHHHHHHHHHHTSSCCSSH-HHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhcCCcccccc-chhhccCCHHHHHHHHhhhh
Confidence 34567888899999998875544 44456799999999999983
No 30
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=20.37 E-value=39 Score=27.05 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhhhhhHHH--hhhCCCCCCCCHHHHHHHHHhh
Q psy6189 210 TSFMEGEKHSYEVGRRHLA--NMMGRDVETFTQKDIDEAIAYL 250 (539)
Q Consensus 210 ~~fm~~q~~ey~iGKRhLA--nMMGeDpe~fTqedIdrAI~YL 250 (539)
.+|+.+++..|.-|.|.-. ..|-.-...+|++||+.-++||
T Consensus 57 ~~~~~~~l~~~~~g~~~~~~~~~Mp~~~~~ls~~ei~~l~~yl 99 (103)
T 2zzs_A 57 EQYIVSSIKAYKNKERSGGLAAVMQAQASLLSDDDIANLAAYY 99 (103)
T ss_dssp HHHHHHHHHHHHTTCBCSTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCcccchHHHHhhCCHHHHHHHHHHH
Confidence 4556667777777765311 1443223579999999999998
No 31
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=20.27 E-value=26 Score=30.03 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHhhhhhHHHhhhCCCCCCCCH
Q psy6189 208 DYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQ 240 (539)
Q Consensus 208 ~~~~fm~~q~~ey~iGKRhLAnMMGeDpe~fTq 240 (539)
.-+.++-+.+. ..|-+.+|.+||.|+.+++-
T Consensus 12 ~~es~il~~la--~~gq~~vA~~iGV~~StISR 42 (97)
T 1xwr_A 12 RIESALLNKIA--MLGTEKTAEAVGVDKSQISR 42 (97)
T ss_dssp HHHHHHHHHHH--HHCHHHHHHHHTCCTTTHHH
T ss_pred HHHHHHHHHHH--HHhHHHHHHHhCCCHHHHHH
Confidence 33444444443 57999999999999999987
No 32
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.13 E-value=28 Score=26.61 Aligned_cols=11 Identities=36% Similarity=0.519 Sum_probs=9.9
Q ss_pred HHHHHHHHhhc
Q psy6189 103 KDIDEAIAYLM 113 (539)
Q Consensus 103 ~di~~ai~yl~ 113 (539)
-||++||+|||
T Consensus 36 Gdv~~Ave~L~ 46 (54)
T 2dah_A 36 GDVDAAVEKLR 46 (54)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 37999999999
Done!