RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6189
(539 letters)
>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli
[TaxId: 562]}
Length = 126
Score = 137 bits (347), Expect = 2e-39
Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
RK + A V + +PG GKI IN++ YF E R + PL DM+ K+D+ +V+ G
Sbjct: 8 RKSSAARVFI-KPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGG 66
Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
G SGQAGAIR GI+ L + + +R +R AG +TRD R+ ERKK G +AR++ + K
Sbjct: 67 GISGQAGAIRHGITRALMEY-DESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSK 125
Query: 539 R 539
R
Sbjct: 126 R 126
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus
thermophilus [TaxId: 274]}
Length = 127
Score = 133 bits (336), Expect = 7e-38
Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
RK A A V + +PG GK+T+N + + +YF + PL D L + D +VR G
Sbjct: 9 RKEAVARVFL-RPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGG 67
Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
G SGQ AI+ GI+ L + P+ R +++ G LTRD R ERKK G+ +AR+ + K
Sbjct: 68 GKSGQIDAIKLGIARALVQY-NPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSK 126
Query: 539 R 539
R
Sbjct: 127 R 127
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 27.8 bits (61), Expect = 1.9
Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 1/100 (1%)
Query: 390 KVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPD 449
V+K + + D V ++ ++ T + T NE FD +
Sbjct: 20 VVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKK-THVKKCTPNAVFNELFVFDIPCE 78
Query: 450 ENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRW 489
+ + F ++ ++ ++ +++ + G + +G W
Sbjct: 79 SLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHW 118
>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 876
Score = 28.5 bits (63), Expect = 2.7
Identities = 11/79 (13%), Positives = 18/79 (22%), Gaps = 16/79 (20%)
Query: 33 PSELAKETANIPETPHHDMFDRTKVSKAMQAYLKRAEDYTNFMEGEKHSFEVGRRHLANM 92
P E+ IP + Q E + F H+
Sbjct: 9 PQEIKSIDTMIPLLSR-------ALWNKHQVKKFNKA------EDFQDRF---IDHVETT 52
Query: 93 MGRDVETFTQKDIDEAIAY 111
+ R + EA +
Sbjct: 53 LARSLYNCDDMVAYEAASM 71
Score = 26.9 bits (59), Expect = 7.1
Identities = 10/79 (12%), Positives = 18/79 (22%), Gaps = 16/79 (20%)
Query: 171 PSELAKETANIPETPHHDMFDRTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANM 230
P E+ IP + Q F + + H+
Sbjct: 9 PQEIKSIDTMIPLLSR-------ALWNKHQVKKF--NKAEDF----QDRF---IDHVETT 52
Query: 231 MGRDVETFTQKDIDEAIAY 249
+ R + EA +
Sbjct: 53 LARSLYNCDDMVAYEAASM 71
>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia
coli [TaxId: 562]}
Length = 564
Score = 28.1 bits (61), Expect = 3.2
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 217 KHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKD 276
K +++ +A MG + ++I + + +L P + M + P +D
Sbjct: 476 KTDWQIISE-IATRMGYPMHYNNTQEIWDELRHLCPD--FYGATYEKMGELGFIQWPCRD 532
Query: 277 AEFDNLGRPYHFL--FYT--GKPNLY 298
+ G Y F F T G +
Sbjct: 533 TSDADQGTSYLFKEKFDTPNGLAQFF 558
Score = 26.9 bits (58), Expect = 7.2
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 87 RHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGR 146
+A MG + ++I + + +L P + M + P +D + G
Sbjct: 483 SEIATRMGYPMHYNNTQEIWDELRHLCPD--FYGATYEKMGELGFIQWPCRDTSDADQGT 540
Query: 147 PYHFL--FYT----ARFSS 159
Y F F T A+F +
Sbjct: 541 SYLFKEKFDTPNGLAQFFT 559
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 258
Score = 27.7 bits (61), Expect = 3.3
Identities = 14/135 (10%), Positives = 38/135 (28%), Gaps = 17/135 (12%)
Query: 165 PDKPNEPSELAKETANIPETPHHD----------MFDRTKVSKAMQAYLKRAEDYTSFME 214
P +P + + H +FD + + + M
Sbjct: 7 PKEPTYVPTEVGDINGVKVLRHDLFTNDIIYTEVVFDIGSLKHELLPLVPLFCQSLLEMG 66
Query: 215 GEKHSYEVGRRHLANMMG---RDVETFTQKDIDEAIAYLMPSGLY-SKKARPYMKHPEEV 270
+ ++ + + G T + + DE + ++ G + +A +
Sbjct: 67 TKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCL 126
Query: 271 FPPKKDAEFDNLGRP 285
++ +F + R
Sbjct: 127 L---QEVQFTDQQRF 138
>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 537
Score = 27.5 bits (60), Expect = 4.5
Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 18/117 (15%)
Query: 207 EDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKH 266
+T + +K+S+ R+ G VET + A + +P +
Sbjct: 345 PHFTFMGDTDKYSWNKAPRY----DGHAVETGPLAQMLVAYGHNHK------TIKPTIDA 394
Query: 267 PEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNKMEDEDLRNPK 323
+A F LGR + A + LN+ E+ +++ +
Sbjct: 395 VLGKLNLGPEALFSTLGRTA--------ARGIQTLVIAQQMENWLNEYENNIVKDKQ 443
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,119,280
Number of extensions: 104458
Number of successful extensions: 291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 18
Length of query: 539
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 449
Effective length of database: 1,171,896
Effective search space: 526181304
Effective search space used: 526181304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)