Query psy6190
Match_columns 87
No_of_seqs 101 out of 337
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 20:01:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1966|consensus 100.0 1.1E-29 2.3E-34 206.9 1.7 83 1-83 304-400 (670)
2 KOG1965|consensus 99.9 7.3E-24 1.6E-28 171.9 -1.9 82 1-82 302-404 (575)
3 TIGR00840 b_cpa1 sodium/hydrog 99.6 6.5E-17 1.4E-21 131.0 -0.3 83 1-83 272-368 (559)
4 TIGR00831 a_cpa1 Na+/H+ antipo 97.8 3.5E-06 7.6E-11 68.0 -0.5 83 1-83 243-355 (525)
5 COG0025 NhaP NhaP-type Na+/H+ 96.7 0.00011 2.5E-09 58.2 -3.3 80 4-83 262-357 (429)
6 PRK05326 potassium/proton anti 93.2 0.019 4E-07 46.6 -0.8 76 7-83 258-343 (562)
7 COG3263 NhaP-type Na+/H+ and K 78.2 0.47 1E-05 39.4 -0.9 74 6-83 255-341 (574)
8 TIGR00844 c_cpa1 na(+)/h(+) an 64.7 1.2 2.6E-05 38.7 -1.5 67 17-83 289-371 (810)
9 cd05312 NAD_bind_1_malic_enz N 23.3 65 0.0014 24.7 2.0 25 56-80 9-33 (279)
10 PF03694 Erg28: Erg28 like pro 21.7 72 0.0016 21.2 1.8 30 4-33 61-93 (111)
No 1
>KOG1966|consensus
Probab=99.95 E-value=1.1e-29 Score=206.88 Aligned_cols=83 Identities=48% Similarity=0.594 Sum_probs=81.4
Q ss_pred CCccccccCCcchHHHHHHHHHHHHhhccchhheeeehhhccccceEE---------EEEehhH-----HHHHHhhhccc
Q psy6190 1 MKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVCW---------TCDVDRP-----YKYVIEEVWTV 66 (87)
Q Consensus 1 m~hY~~~NlS~~S~~t~k~~~k~ls~~sEt~IFlyLG~s~~~~~~~W~---------~cl~~R~-----Lt~llN~fR~~ 66 (87)
|++|+++|+|++|.+++||++||+|++||++||+|||+++++..|+|| ||+++|+ |||++|+||.+
T Consensus 304 m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~ 383 (670)
T KOG1966|consen 304 MKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMV 383 (670)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhhee
Confidence 789999999999999999999999999999999999999999999999 8999999 99999999999
Q ss_pred CCCCCceEEEEeccccC
Q psy6190 67 RLTSMNGRSTTHLYSRS 83 (87)
Q Consensus 67 kI~~~dQ~im~y~~~~~ 83 (87)
|++++||+||+|||.|.
T Consensus 384 k~~~~DQfimsyGGLRG 400 (670)
T KOG1966|consen 384 KLEFVDQFIMSYGGLRG 400 (670)
T ss_pred eccccceeeeecCCcch
Confidence 99999999999999995
No 2
>KOG1965|consensus
Probab=99.86 E-value=7.3e-24 Score=171.85 Aligned_cols=82 Identities=24% Similarity=0.284 Sum_probs=78.3
Q ss_pred CCccccccCCcchHHHHHHHHHHHHhhccchhheeeehhhcccc-ceEE----------EEEehhH-----HHHHHhhhc
Q psy6190 1 MKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDA-HVCW----------TCDVDRP-----YKYVIEEVW 64 (87)
Q Consensus 1 m~hY~~~NlS~~S~~t~k~~~k~ls~~sEt~IFlyLG~s~~~~~-~~W~----------~cl~~R~-----Lt~llN~fR 64 (87)
|+||+++|+|++||.++||+|+++|++|||+||+|+|+++++.+ |.|. +|+++|+ |++++|.+|
T Consensus 302 msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~r 381 (575)
T KOG1965|consen 302 MSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFR 381 (575)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 79999999999999999999999999999999999999999998 8888 6889999 999999999
Q ss_pred ccC----CCCCceEEEEecc-cc
Q psy6190 65 TVR----LTSMNGRSTTHLY-SR 82 (87)
Q Consensus 65 ~~k----I~~~dQ~im~y~~-~~ 82 (87)
+.| |+.++|.+||+.| .|
T Consensus 382 r~k~~~~i~~~~q~~~~w~g~lR 404 (575)
T KOG1965|consen 382 RHKECDLIDDKYQVIMWWAGGLR 404 (575)
T ss_pred ccccccccChHHhhHhHhhhhhh
Confidence 888 9999999999998 65
No 3
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.61 E-value=6.5e-17 Score=131.00 Aligned_cols=83 Identities=41% Similarity=0.570 Sum_probs=77.1
Q ss_pred CCccccccCCcchHHHHHHHHHHHHhhccchhheeeehhhccccceEE---------EEEehhH-----HHHHHhhhccc
Q psy6190 1 MKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVCW---------TCDVDRP-----YKYVIEEVWTV 66 (87)
Q Consensus 1 m~hY~~~NlS~~S~~t~k~~~k~ls~~sEt~IFlyLG~s~~~~~~~W~---------~cl~~R~-----Lt~llN~fR~~ 66 (87)
|+||+++|+|++++.+++++++++++++|++||+++|++++...+.|+ +|+++|+ ++++.|++|..
T Consensus 272 ~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~ 351 (559)
T TIGR00840 272 MKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPV 351 (559)
T ss_pred HHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 578999999999999999999999999999999999999988766677 6789999 78999999999
Q ss_pred CCCCCceEEEEeccccC
Q psy6190 67 RLTSMNGRSTTHLYSRS 83 (87)
Q Consensus 67 kI~~~dQ~im~y~~~~~ 83 (87)
|++++||++|+|+|.|-
T Consensus 352 ~~~~~e~~il~w~GlRG 368 (559)
T TIGR00840 352 EIPYKDQLVIFYAGLRG 368 (559)
T ss_pred CCChhhhhheeeecccc
Confidence 99999999999999984
No 4
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=97.81 E-value=3.5e-06 Score=67.97 Aligned_cols=83 Identities=13% Similarity=0.103 Sum_probs=60.3
Q ss_pred CCccccc-cCCcchHHHHHHHHHHHHhhccchhheeeehhhcccc-ceEE-------EE---------------EehhH-
Q psy6190 1 MKNYVEA-NISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDA-HVCW-------TC---------------DVDRP- 55 (87)
Q Consensus 1 m~hY~~~-NlS~~S~~t~k~~~k~ls~~sEt~IFlyLG~s~~~~~-~~W~-------~c---------------l~~R~- 55 (87)
|++|... +.+++++...+.+.++++++.|+++|+++|+.+-..- +.|+ .+ .+.|+
T Consensus 243 l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~ 322 (525)
T TIGR00831 243 LTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMTYVRFL 322 (525)
T ss_pred HccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666 8899999999999999999999999999999875421 2232 11 12333
Q ss_pred --HHHHHhhhcc---cCCCCCceEEEEeccccC
Q psy6190 56 --YKYVIEEVWT---VRLTSMNGRSTTHLYSRS 83 (87)
Q Consensus 56 --Lt~llN~fR~---~kI~~~dQ~im~y~~~~~ 83 (87)
+..++|+++. .++++++|.+|+++|.|-
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~r~~~v~~w~G~RG 355 (525)
T TIGR00831 323 WTMKPFSNRFLKKKPMEFGTRWKHVVSWAGLRG 355 (525)
T ss_pred HHHHHHHHHHhhcccCCCChhhHHHheeccchH
Confidence 2345676632 467899999999999984
No 5
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=96.67 E-value=0.00011 Score=58.16 Aligned_cols=80 Identities=15% Similarity=0.046 Sum_probs=60.9
Q ss_pred cccccCCcch-HHHHHHHHHHHHhhccchhheeeehhhcccc-ce--EE-------EEEehhH----HH-HHHhhhcccC
Q psy6190 4 YVEANISHKS-HTTVKYAMKMLSSSSETIIFMFLGISTISDA-HV--CW-------TCDVDRP----YK-YVIEEVWTVR 67 (87)
Q Consensus 4 Y~~~NlS~~S-~~t~k~~~k~ls~~sEt~IFlyLG~s~~~~~-~~--W~-------~cl~~R~----Lt-~llN~fR~~k 67 (87)
+...|.+..+ +...+.+.+.++++.+.++|+++|.++-... +. |- .+++.|. ++ +..|+.-..+
T Consensus 262 ~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~ 341 (429)
T COG0025 262 AVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDP 341 (429)
T ss_pred hhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Confidence 5567888755 9999999999999999999999999885554 32 22 5678998 33 3333122357
Q ss_pred CCCCceEEEEeccccC
Q psy6190 68 LTSMNGRSTTHLYSRS 83 (87)
Q Consensus 68 I~~~dQ~im~y~~~~~ 83 (87)
.++++|+.++++|.|-
T Consensus 342 ~~~~~~~~l~w~G~RG 357 (429)
T COG0025 342 LPWRERLFLSWAGPRG 357 (429)
T ss_pred CCHHHHHHHhhccccc
Confidence 8999999999999984
No 6
>PRK05326 potassium/proton antiporter; Reviewed
Probab=93.19 E-value=0.019 Score=46.62 Aligned_cols=76 Identities=13% Similarity=0.085 Sum_probs=54.6
Q ss_pred ccCCcchHHHHHHHHHHHHhhccchhheeeehhhcccc-c--eEE-------EEEehhHHHHHHhhhcccCCCCCceEEE
Q psy6190 7 ANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDA-H--VCW-------TCDVDRPYKYVIEEVWTVRLTSMNGRST 76 (87)
Q Consensus 7 ~NlS~~S~~t~k~~~k~ls~~sEt~IFlyLG~s~~~~~-~--~W~-------~cl~~R~Lt~llN~fR~~kI~~~dQ~im 76 (87)
+|-+.+.+..++.+.+.++.+++.+.|+++|+.+-... . .|. +++++|.++..+-. +.-+++++++..+
T Consensus 258 ~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~-~~~~~~~~e~~~i 336 (562)
T PRK05326 258 GNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSL-LPFRFNLREKLFI 336 (562)
T ss_pred hCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCCHhhhhee
Confidence 45555566788999999999999999999999874433 1 122 34678874433322 2237899999999
Q ss_pred EeccccC
Q psy6190 77 THLYSRS 83 (87)
Q Consensus 77 ~y~~~~~ 83 (87)
+++|.|-
T Consensus 337 ~~~g~RG 343 (562)
T PRK05326 337 SWVGLRG 343 (562)
T ss_pred eeecchh
Confidence 9999874
No 7
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=78.25 E-value=0.47 Score=39.36 Aligned_cols=74 Identities=12% Similarity=0.075 Sum_probs=57.0
Q ss_pred cccCCcchHHHHHHHHHHHHhhccchhheeeehhhccccceEE-----------EEEehhH--HHHHHhhhcccCCCCCc
Q psy6190 6 EANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVCW-----------TCDVDRP--YKYVIEEVWTVRLTSMN 72 (87)
Q Consensus 6 ~~NlS~~S~~t~k~~~k~ls~~sEt~IFlyLG~s~~~~~~~W~-----------~cl~~R~--Lt~llN~fR~~kI~~~d 72 (87)
..|..-+++..+..+++-++.+++..+|+.||+=+...+ -|. .++++|. .--.+|+|| .+.++
T Consensus 255 ~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsq-l~~iavPailL~l~mifvaRP~aV~l~l~Pfr---f~~~E 330 (574)
T COG3263 255 LGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQ-LLPIAIPAILLSLWMIFVARPLAVFLGLIPFR---FNRRE 330 (574)
T ss_pred hCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhh-hhHhhHHHHHHHHHHHHHHhHHHHHHhhcccc---cCccc
Confidence 467888899999999999999999999999998765554 333 5677887 223456776 67777
Q ss_pred eEEEEeccccC
Q psy6190 73 GRSTTHLYSRS 83 (87)
Q Consensus 73 Q~im~y~~~~~ 83 (87)
..-+++-|-|-
T Consensus 331 k~fvSWvGLRG 341 (574)
T COG3263 331 KLFVSWVGLRG 341 (574)
T ss_pred hheeehhhccc
Confidence 77888888774
No 8
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=64.68 E-value=1.2 Score=38.71 Aligned_cols=67 Identities=9% Similarity=-0.018 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhccchhheeeehhhcccc--------ceEE-------EEEehhH-HHHHHhhhcccCCCCCceEEEEecc
Q psy6190 17 VKYAMKMLSSSSETIIFMFLGISTISDA--------HVCW-------TCDVDRP-YKYVIEEVWTVRLTSMNGRSTTHLY 80 (87)
Q Consensus 17 ~k~~~k~ls~~sEt~IFlyLG~s~~~~~--------~~W~-------~cl~~R~-Lt~llN~fR~~kI~~~dQ~im~y~~ 80 (87)
...+.+.+..+.+.++|+++|..+.... ..|. ++++.|. ..+++..+-....+++++..+++.|
T Consensus 289 ~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigWFG 368 (810)
T TIGR00844 289 ESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGHFG 368 (810)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHheeec
Confidence 3447888999999999999998874332 1244 4457786 3344333322345899999999999
Q ss_pred ccC
Q psy6190 81 SRS 83 (87)
Q Consensus 81 ~~~ 83 (87)
.|-
T Consensus 369 pRG 371 (810)
T TIGR00844 369 PIG 371 (810)
T ss_pred ccc
Confidence 883
No 9
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=23.25 E-value=65 Score=24.74 Aligned_cols=25 Identities=4% Similarity=-0.191 Sum_probs=23.1
Q ss_pred HHHHHhhhcccCCCCCceEEEEecc
Q psy6190 56 YKYVIEEVWTVRLTSMNGRSTTHLY 80 (87)
Q Consensus 56 Lt~llN~fR~~kI~~~dQ~im~y~~ 80 (87)
|..++|-.|..+.+..||.|+.+|.
T Consensus 9 lAgllnAlk~~g~~l~d~~iv~~GA 33 (279)
T cd05312 9 LAGLLAALRITGKPLSDQRILFLGA 33 (279)
T ss_pred HHHHHHHHHHhCCChhhcEEEEECc
Confidence 7889999999999999999999985
No 10
>PF03694 Erg28: Erg28 like protein; InterPro: IPR005352 This is a family of integral membrane proteins, which may contain four transmembrane helices. Members of this family are thought to be involved in sterol C-4 demethylation. In Saccharomyces cerevisiae (Baker's yeast) they may tether Erg26p (sterol dehydrogenase/decarboxylase) and Erg27p (3-ketoreductase) to the endoplasmic reticulum or may facilitate interaction between these proteins []. The family contains a conserved arginine and histidine that may be functionally important.; GO: 0016021 integral to membrane
Probab=21.69 E-value=72 Score=21.22 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=21.5
Q ss_pred cccccCCcchHH---HHHHHHHHHHhhccchhh
Q psy6190 4 YVEANISHKSHT---TVKYAMKMLSSSSETIIF 33 (87)
Q Consensus 4 Y~~~NlS~~S~~---t~k~~~k~ls~~sEt~IF 33 (87)
|+..|++.+.-- -..+......+++|.+||
T Consensus 61 ~~Ay~i~n~~lY~lt~~SfviAl~HF~sE~lvf 93 (111)
T PF03694_consen 61 YCAYNIHNKPLYDLTFWSFVIALGHFLSEWLVF 93 (111)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566788777733 344567778889999887
Done!