Query psy6190
Match_columns 87
No_of_seqs 101 out of 337
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 20:01:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kbv_A Sodium/hydrogen exchang 96.0 0.00018 6.1E-09 37.0 -3.1 14 70-83 1-14 (28)
2 2lxr_A NADH dehydrogenase I su 34.0 14 0.00049 22.5 1.0 35 1-35 1-35 (76)
3 3uf7_A UDG, uracil-DNA glycosy 10.5 1.5E+02 0.0052 21.3 2.3 26 14-39 142-167 (237)
4 4h62_V Mediator of RNA polymer 9.9 1.1E+02 0.0037 15.2 0.9 20 13-32 7-26 (31)
5 3fci_A UDG, uracil-DNA glycosy 9.7 1.7E+02 0.0058 20.8 2.3 26 14-39 142-167 (223)
6 2v2g_A Peroxiredoxin 6; oxidor 9.6 64 0.0022 22.2 0.0 11 76-86 220-230 (233)
7 3tr7_A UDG, uracil-DNA glycosy 9.4 1.6E+02 0.0056 21.0 2.1 26 14-39 147-172 (232)
8 1wyl_A NEDD9 interacting prote 8.9 1.9E+02 0.0065 17.8 2.1 18 53-70 38-55 (116)
9 3l32_A Phosphoprotein; antipar 8.7 1.1E+02 0.0039 16.6 0.8 14 19-32 25-38 (45)
10 3k6g_D Telomeric repeat-bindin 8.6 1.9E+02 0.0065 15.5 1.6 14 14-27 11-24 (42)
No 1
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=95.98 E-value=0.00018 Score=36.99 Aligned_cols=14 Identities=7% Similarity=-0.287 Sum_probs=11.8
Q ss_pred CCceEEEEeccccC
Q psy6190 70 SMNGRSTTHLYSRS 83 (87)
Q Consensus 70 ~~dQ~im~y~~~~~ 83 (87)
.+||+||||||.|-
T Consensus 1 ~~~Q~i~~~~GLRG 14 (28)
T 2kbv_A 1 XKDQFIIAYGGLRG 14 (28)
T ss_dssp -CHHHHTTTTSSCH
T ss_pred CCceeEEEeecchH
Confidence 36999999999983
No 2
>2lxr_A NADH dehydrogenase I subunit E; HP1264, oxidoreductase; NMR {Helicobacter pylori}
Probab=33.98 E-value=14 Score=22.46 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=24.2
Q ss_pred CCccccccCCcchHHHHHHHHHHHHhhccchhhee
Q psy6190 1 MKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMF 35 (87)
Q Consensus 1 m~hY~~~NlS~~S~~t~k~~~k~ls~~sEt~IFly 35 (87)
|++|-.-.+..+=--....++..=+...|..||+|
T Consensus 1 MkR~DLRhLk~~f~~rm~ei~~~~~~~gEV~IFlF 35 (76)
T 2lxr_A 1 MKRFDLRPLKAGIFERLEELIEKEMQPNEVAIFMF 35 (76)
T ss_dssp CCEEECGGGTTTTHHHHHHHHHTTSCTTCEEEEEE
T ss_pred CcccchhhhHHHHHHHHHHHHHhccCCCcEEEEEE
Confidence 66777666666555555555555567789999998
No 3
>3uf7_A UDG, uracil-DNA glycosylase; glycosylase, SSB C-terminal, base excision repair, hydrolase; HET: SO4; 1.20A {Escherichia coli} PDB: 1uug_A 1lqj_A 1lqm_A 1lqg_A 2uug_A 1eui_A 1eug_A 4eug_A 5eug_A 3eug_A 2eug_A 1flz_A 2jhq_A
Probab=10.46 E-value=1.5e+02 Score=21.29 Aligned_cols=26 Identities=15% Similarity=0.418 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhccchhheeeehh
Q psy6190 14 HTTVKYAMKMLSSSSETIIFMFLGIS 39 (87)
Q Consensus 14 ~~t~k~~~k~ls~~sEt~IFlyLG~s 39 (87)
+.-+..+.+.|+.-.|.+||+..|=.
T Consensus 142 e~fTd~vI~~l~~~~~~vVFlLWG~~ 167 (237)
T 3uf7_A 142 ETFTDKVISLINQHREGVVFLLWGSH 167 (237)
T ss_dssp HHHHHHHHHHHHHHCSSCEEEEESHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEEecHH
Confidence 45677888999999999999999944
No 4
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=9.86 E-value=1.1e+02 Score=15.16 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHhhccchh
Q psy6190 13 SHTTVKYAMKMLSSSSETII 32 (87)
Q Consensus 13 S~~t~k~~~k~ls~~sEt~I 32 (87)
++..-|++-++|..+-|+|+
T Consensus 7 trfdekqieelldncietfv 26 (31)
T 4h62_V 7 TRFDEKQIEELLDNCIETFV 26 (31)
T ss_dssp ---CHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 45556888888988888876
No 5
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 3tkb_A 4skn_E* 1okb_A
Probab=9.68 E-value=1.7e+02 Score=20.77 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhccchhheeeehh
Q psy6190 14 HTTVKYAMKMLSSSSETIIFMFLGIS 39 (87)
Q Consensus 14 ~~t~k~~~k~ls~~sEt~IFlyLG~s 39 (87)
..-+..+.+.|+.-.|.+||+..|=.
T Consensus 142 e~fTd~vI~~l~~~~~~vVFiLWG~~ 167 (223)
T 3fci_A 142 EQFTDAVVSWLNQNSNGLVFLLWGSY 167 (223)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEESHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECHH
Confidence 56788889999999999999999943
No 6
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=9.59 E-value=64 Score=22.15 Aligned_cols=11 Identities=36% Similarity=0.286 Sum_probs=0.8
Q ss_pred EEeccccCCCC
Q psy6190 76 TTHLYSRSNHN 86 (87)
Q Consensus 76 m~y~~~~~~~~ 86 (87)
=.+||+||.|.
T Consensus 220 ~~~~~~~~~~~ 230 (233)
T 2v2g_A 220 KSMGGSRSHHH 230 (233)
T ss_dssp CC---------
T ss_pred ccccCcccccc
Confidence 34678888763
No 7
>3tr7_A UDG, uracil-DNA glycosylase; DNA metabolism, hydrolase; 2.20A {Coxiella burnetii}
Probab=9.35 E-value=1.6e+02 Score=20.97 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhccchhheeeehh
Q psy6190 14 HTTVKYAMKMLSSSSETIIFMFLGIS 39 (87)
Q Consensus 14 ~~t~k~~~k~ls~~sEt~IFlyLG~s 39 (87)
+.-+..+.+.|+.-.|.+||+..|=.
T Consensus 147 e~fTd~vI~~l~~~~~~vVFiLWG~~ 172 (232)
T 3tr7_A 147 HRFTDKVIESLNDHPEGIVFLLWGSY 172 (232)
T ss_dssp HHHHHHHHHHGGGCSSCCEEEEESHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeCHH
Confidence 56788889999999999999999943
No 8
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=8.95 E-value=1.9e+02 Score=17.81 Aligned_cols=18 Identities=6% Similarity=-0.112 Sum_probs=13.5
Q ss_pred hhHHHHHHhhhcccCCCC
Q psy6190 53 DRPYKYVIEEVWTVRLTS 70 (87)
Q Consensus 53 ~R~Lt~llN~fR~~kI~~ 70 (87)
|+++++|++.+|-.-|++
T Consensus 38 G~af~aLih~~~P~lid~ 55 (116)
T 1wyl_A 38 GLALCALVYRLQPGLLEP 55 (116)
T ss_dssp SHHHHHHHHHHCTTSCCC
T ss_pred cHHHHHHHHHHCcCCCCH
Confidence 567999999998655543
No 9
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=8.69 E-value=1.1e+02 Score=16.64 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=11.8
Q ss_pred HHHHHHHhhccchh
Q psy6190 19 YAMKMLSSSSETII 32 (87)
Q Consensus 19 ~~~k~ls~~sEt~I 32 (87)
.|||+.|..+|-++
T Consensus 25 ~FfKiWS~~~e~I~ 38 (45)
T 3l32_A 25 RFLKIWSQTVEEIV 38 (45)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 48999999999765
No 10
>3k6g_D Telomeric repeat-binding factor 2; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=8.62 E-value=1.9e+02 Score=15.49 Aligned_cols=14 Identities=43% Similarity=0.422 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhh
Q psy6190 14 HTTVKYAMKMLSSS 27 (87)
Q Consensus 14 ~~t~k~~~k~ls~~ 27 (87)
-.+.|..||+||..
T Consensus 11 i~tLk~AFK~Ls~s 24 (42)
T 3k6g_D 11 MMTLKAAFKTLSGA 24 (42)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccC
Confidence 45788999999864
Done!