Query psy6190
Match_columns 87
No_of_seqs 101 out of 337
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 20:01:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6190.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6190hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vl6a1 c.2.1.7 (A:155-376) Ma 31.1 13 0.00092 24.8 2.2 25 56-80 10-34 (222)
2 d1zo0a1 d.108.1.7 (A:94-219) O 18.2 21 0.0015 22.0 1.2 14 33-46 97-110 (126)
3 d1gq2a1 c.2.1.7 (A:280-580) Mi 16.6 26 0.0019 24.2 1.5 25 56-80 9-33 (298)
4 d3euga_ c.18.1.1 (A:) Uracil-D 15.2 34 0.0025 22.6 1.8 26 14-39 138-163 (225)
5 d1pj3a1 c.2.1.7 (A:280-573) Mi 12.0 41 0.003 23.0 1.5 25 56-80 9-33 (294)
6 d2j8xa1 c.18.1.1 (A:26-255) Ur 12.0 48 0.0035 21.9 1.8 27 14-40 143-169 (230)
7 d1sh5a2 a.40.1.1 (A:128-237) A 11.6 52 0.0038 18.8 1.7 32 35-69 22-53 (110)
8 d2hxma1 c.18.1.1 (A:82-304) Ur 10.1 61 0.0044 21.2 1.8 27 14-40 142-168 (223)
9 d2h2ja2 b.85.7.3 (A:50-310) Ru 10.0 41 0.003 20.8 0.8 20 65-84 225-244 (261)
10 d1o0sa1 c.2.1.7 (A:296-603) Mi 9.6 56 0.0041 22.5 1.5 25 56-80 9-33 (308)
No 1
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}
Probab=31.07 E-value=13 Score=24.80 Aligned_cols=25 Identities=0% Similarity=-0.179 Sum_probs=23.0
Q ss_pred HHHHHhhhcccCCCCCceEEEEecc
Q psy6190 56 YKYVIEEVWTVRLTSMNGRSTTHLY 80 (87)
Q Consensus 56 Lt~llN~fR~~kI~~~dQ~im~y~~ 80 (87)
|..++|-.|..+-+.+||.++.||.
T Consensus 10 LAgll~a~~~~g~~l~d~riv~~GA 34 (222)
T d1vl6a1 10 SAAFLNALKLTEKKIEEVKVVVNGI 34 (222)
T ss_dssp HHHHHHHHHHHTCCTTTCEEEEECC
T ss_pred HHHHHHHHHHhCCChhhcEEEEECh
Confidence 7889999999899999999999985
No 2
>d1zo0a1 d.108.1.7 (A:94-219) Ornithine decarboxylase antizyme {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.23 E-value=21 Score=21.96 Aligned_cols=14 Identities=36% Similarity=0.731 Sum_probs=9.5
Q ss_pred heeeehhhccccce
Q psy6190 33 FMFLGISTISDAHV 46 (87)
Q Consensus 33 FlyLG~s~~~~~~~ 46 (87)
|.|+|.+++...|-
T Consensus 97 f~f~GFe~v~p~hp 110 (126)
T d1zo0a1 97 FSFLGFEIVRPGHP 110 (126)
T ss_dssp HTTTCCEEECCCCS
T ss_pred eeecceEEcCCCCC
Confidence 66778777776543
No 3
>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Probab=16.56 E-value=26 Score=24.21 Aligned_cols=25 Identities=0% Similarity=-0.191 Sum_probs=23.0
Q ss_pred HHHHHhhhcccCCCCCceEEEEecc
Q psy6190 56 YKYVIEEVWTVRLTSMNGRSTTHLY 80 (87)
Q Consensus 56 Lt~llN~fR~~kI~~~dQ~im~y~~ 80 (87)
|..++|-.|..+-+..||.++.||+
T Consensus 9 lAglinAlki~gk~l~d~kiV~~GA 33 (298)
T d1gq2a1 9 VAGLLAALRITKNRLSDHTVLFQGA 33 (298)
T ss_dssp HHHHHHHHHHHTSCGGGCCEEEECC
T ss_pred HHHHHHHHHHhCCCHHHcEEEEECc
Confidence 7889999999889999999999975
No 4
>d3euga_ c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia coli [TaxId: 562]}
Probab=15.17 E-value=34 Score=22.62 Aligned_cols=26 Identities=15% Similarity=0.418 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhccchhheeeehh
Q psy6190 14 HTTVKYAMKMLSSSSETIIFMFLGIS 39 (87)
Q Consensus 14 ~~t~k~~~k~ls~~sEt~IFlyLG~s 39 (87)
..-++.+++.|+.-.+.+||+..|=.
T Consensus 138 e~ft~~ii~~l~~~~~~vvfiLwG~~ 163 (225)
T d3euga_ 138 ETFTDKVISLINQHREGVVFLLWGSH 163 (225)
T ss_dssp HHHHHHHHHHHHHHCSSCEEEEESHH
T ss_pred HHHHHHHHHHHHccCCCeEEEEeeeh
Confidence 45678888999988999999999943
No 5
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.98 E-value=41 Score=23.03 Aligned_cols=25 Identities=0% Similarity=-0.246 Sum_probs=22.7
Q ss_pred HHHHHhhhcccCCCCCceEEEEecc
Q psy6190 56 YKYVIEEVWTVRLTSMNGRSTTHLY 80 (87)
Q Consensus 56 Lt~llN~fR~~kI~~~dQ~im~y~~ 80 (87)
|..++|-.|..+-+..||.|+.+|+
T Consensus 9 lAglinAlki~gk~l~d~kiv~~GA 33 (294)
T d1pj3a1 9 LAGLLAAQKVISKPISEHKILFLGA 33 (294)
T ss_dssp HHHHHHHHHHHCCCGGGCCEEEECC
T ss_pred HHHHHHHHHHhCCCHHHcEEEEECc
Confidence 7889999998888999999999985
No 6
>d2j8xa1 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstein-Barr virus [TaxId: 10376]}
Probab=11.96 E-value=48 Score=21.91 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhccchhheeeehhh
Q psy6190 14 HTTVKYAMKMLSSSSETIIFMFLGIST 40 (87)
Q Consensus 14 ~~t~k~~~k~ls~~sEt~IFlyLG~s~ 40 (87)
..-++.+++.|+.-.+.+||+..|=..
T Consensus 143 e~ft~~~i~~l~~~~~~vVfiLWG~~A 169 (230)
T d2j8xa1 143 AWFTDHVISLLSERLKACVFMLWGAKA 169 (230)
T ss_dssp HHHHHHHHHHHHHHCSSCEEEEESHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEEeecchh
Confidence 456788888898888999999999544
No 7
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.65 E-value=52 Score=18.80 Aligned_cols=32 Identities=9% Similarity=0.101 Sum_probs=20.4
Q ss_pred eeehhhccccceEEEEEehhHHHHHHhhhcccCCC
Q psy6190 35 FLGISTISDAHVCWTCDVDRPYKYVIEEVWTVRLT 69 (87)
Q Consensus 35 yLG~s~~~~~~~W~~cl~~R~Lt~llN~fR~~kI~ 69 (87)
|-|+.+-.+...|. =||++++|++.+|-.-|+
T Consensus 22 y~~v~v~nFs~sw~---DG~afcaLih~~~P~~id 53 (110)
T d1sh5a2 22 YQGLRCDNFTTSWR---DGRLFNAIIHRHKPMLID 53 (110)
T ss_dssp STTCCCCCSSGGGT---TSHHHHHHHHTTCTTTCC
T ss_pred CCCeeccCCccccc---CcHHHHHHHHHHCcccCC
Confidence 44555544444552 267799999999866554
No 8
>d2hxma1 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.14 E-value=61 Score=21.25 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhccchhheeeehhh
Q psy6190 14 HTTVKYAMKMLSSSSETIIFMFLGIST 40 (87)
Q Consensus 14 ~~t~k~~~k~ls~~sEt~IFlyLG~s~ 40 (87)
+.-+..+++.|+.-.+.+||+..|=..
T Consensus 142 ~~ft~~ii~~l~~~~~~vVfiLWG~~A 168 (223)
T d2hxma1 142 EQFTDAVVSWLNQNSNGLVFLLWGSYA 168 (223)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEESHHH
T ss_pred HHHHHHHHHHHhcccCCeEEEEeeehH
Confidence 456777888888888999999999544
No 9
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=9.98 E-value=41 Score=20.79 Aligned_cols=20 Identities=10% Similarity=0.002 Sum_probs=16.7
Q ss_pred ccCCCCCceEEEEeccccCC
Q psy6190 65 TVRLTSMNGRSTTHLYSRSN 84 (87)
Q Consensus 65 ~~kI~~~dQ~im~y~~~~~~ 84 (87)
..+|..-+|+-++||..++|
T Consensus 225 ~r~I~~GEEI~isYG~~~~n 244 (261)
T d2h2ja2 225 PLSVKAGEQVYIQYDLNKSN 244 (261)
T ss_dssp SSCCCTTSBCEECSCSSCCH
T ss_pred CCCCCCCCEEEEecCCCCCH
Confidence 46899999999999866665
No 10
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=9.56 E-value=56 Score=22.54 Aligned_cols=25 Identities=0% Similarity=-0.239 Sum_probs=22.4
Q ss_pred HHHHHhhhcccCCCCCceEEEEecc
Q psy6190 56 YKYVIEEVWTVRLTSMNGRSTTHLY 80 (87)
Q Consensus 56 Lt~llN~fR~~kI~~~dQ~im~y~~ 80 (87)
|..|+|-.|..+-+..||.|+.+|+
T Consensus 9 lAglinAlki~gk~l~d~kivi~GA 33 (308)
T d1o0sa1 9 VAGLLTCTRVTKKLVSQEKYLFFGA 33 (308)
T ss_dssp HHHHHHHHHHHCCCGGGCCEEEECC
T ss_pred HHHHHHHHHHhCCCHHHcEEEEECc
Confidence 7889999998888899999999975
Done!