BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6192
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG--VNDFLGEVIIELSSSL 145
+KT+ T +PKWNQ+F Y + R + + R +EIT+WD R ++FLGE++IEL ++L
Sbjct: 62 TKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL 121
Query: 146 CTDEPEWFYLTKHKNSGSN 164
DEP W+ L H + S+
Sbjct: 122 LDDEPHWYKLQTHDSGPSS 140
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG--VNDFLGEVIIELS 60
K KT+ T +PKWNQ+F Y + R + + R +EIT+WD R ++FLGE++IEL
Sbjct: 59 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 118
Query: 61 SSLCTDEPEWFYLTKH 76
++L DEP W+ L H
Sbjct: 119 TALLDDEPHWYKLQTH 134
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG--VNDFLGEVIIELS 60
K KT+ T +PKWNQ+F Y + R + + R +EIT+WD R ++FLGE++IEL
Sbjct: 56 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 115
Query: 61 SSLCTDEPEWFYL 73
++L DEP W+ L
Sbjct: 116 TALLDDEPHWYKL 128
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG--VNDFLGEVIIELSSSL 145
+KT+ T +PKWNQ+F Y + R + + R +EIT+WD R ++FLGE++IEL ++L
Sbjct: 59 TKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL 118
Query: 146 CTDEPEWFYL 155
DEP W+ L
Sbjct: 119 LDDEPHWYKL 128
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
+K K + + +P+WNQ+ Y I L +++E+TVWDY R+ NDFLGEV+I+LSS
Sbjct: 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123
Query: 62 SLCTDE-PEWFYLTKHT 77
+ D P W+ L + T
Sbjct: 124 TSHLDNTPRWYPLKEQT 140
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+K + + +P+WNQ+ Y I L +++E+TVWDY R+ NDFLGEV+I+LSS+
Sbjct: 68 TKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL 127
Query: 148 DE-PEWFYLTKHKNS 161
D P W+ L + S
Sbjct: 128 DNTPRWYPLKEQTES 142
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIEL 141
+KTL NT +P WN++ Y GI D++ +++ I+V D ++G N+F+GE L
Sbjct: 68 TKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 121
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIEL 59
KTL NT +P WN++ Y GI D++ +++ I+V D ++G N+F+GE L
Sbjct: 69 KTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 121
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIEL 141
+KTL NT +P WN++ Y GI D++ +++ I+V D ++G N+F+GE L
Sbjct: 70 TKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 123
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIEL 59
KTL NT +P WN++ Y GI D++ +++ I+V D ++G N+F+GE L
Sbjct: 71 KTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 123
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
K+ KT+ +T +P+WN+SF + ++ SD K R + + +WD+ R NDF+G + +S
Sbjct: 55 KQKTKTIRSTLNPQWNESFTF-KLKPSD-KDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 112
Query: 63 LCTDEPEWFYL 73
+ W+ L
Sbjct: 113 MKMPASGWYKL 123
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+KT+ +T +P+WN+SF + ++ SD K R + + +WD+ R NDF+G + +S +
Sbjct: 58 TKTIRSTLNPQWNESFTF-KLKPSD-KDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKM 115
Query: 148 DEPEWFYL 155
W+ L
Sbjct: 116 PASGWYKL 123
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
K+ KT+ +T +P+WN+SF + ++ SD K R + + +WD+ R NDF+G + +S
Sbjct: 54 KQKTKTIRSTLNPQWNESFTF-KLKPSD-KDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 111
Query: 63 LCTDEPEWFYL 73
+ W+ L
Sbjct: 112 MKMPASGWYKL 122
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+KT+ +T +P+WN+SF + ++ SD K R + + +WD+ R NDF+G + +S +
Sbjct: 57 TKTIRSTLNPQWNESFTF-KLKPSD-KDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKM 114
Query: 148 DEPEWFYL 155
W+ L
Sbjct: 115 PASGWYKL 122
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 12 TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
T +P++N+ FFY I+ SDL +S++I+VWDY ND++G + +S+
Sbjct: 84 TLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 132
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 94 TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
T +P++N+ FFY I+ SDL +S++I+VWDY ND++G + +S+
Sbjct: 84 TLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 132
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 12 TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
T +P++N+ FFY I+ SDL +S++I+VWDY ND++G + +S+
Sbjct: 62 TLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 110
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 94 TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
T +P++N+ FFY I+ SDL +S++I+VWDY ND++G + +S+
Sbjct: 62 TLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 110
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 12 TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
T +P++N+ FFY I+ SDL +S++I+VWDY ND++G + +S+
Sbjct: 84 TLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 132
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 94 TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
T +P++N+ FFY I+ SDL +S++I+VWDY ND++G + +S+
Sbjct: 84 TLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 132
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
K+ KT+ ++ +P+WN++F + ++ SD K R + + +WD+ NDF+G + +S
Sbjct: 210 KQKTKTIKSSLNPEWNETFRFQ-LKESD-KDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 267
Query: 63 LCTDEPEWFYL 73
WF L
Sbjct: 268 QKAGVDGWFKL 278
Score = 40.0 bits (92), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+KT+ ++ +P+WN++F + ++ SD K R + + +WD+ NDF+G + +S
Sbjct: 213 TKTIKSSLNPEWNETFRFQ-LKESD-KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA 270
Query: 148 DEPEWFYL 155
WF L
Sbjct: 271 GVDGWFKL 278
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 75 KHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFL 134
KH LE + NL +P WN++F + G + R + + V DY R+ ND +
Sbjct: 60 KHKLETKVKRKNL--------NPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPI 111
Query: 135 GEVIIELS 142
GEV I L+
Sbjct: 112 GEVSIPLN 119
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 14 DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS 60
+P WN++F + G + R + + V DY R+ ND +GEV I L+
Sbjct: 73 NPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLN 119
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
K+ +T+ T +P WN++F + ++ D++ R + + VWD+ R NDF+G + +S
Sbjct: 58 KQKTRTVKATLNPVWNETFVF-NLKPGDVE-RRLSVEVWDWDRTSRNDFMGAMSFGVSEL 115
Query: 63 LCTDEPEWFYL 73
L W+ L
Sbjct: 116 LKAPVDGWYKL 126
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
++T+ T +P WN++F + ++ D++ R + + VWD+ R NDF+G + +S L
Sbjct: 61 TRTVKATLNPVWNETFVF-NLKPGDVE-RRLSVEVWDWDRTSRNDFMGAMSFGVSELLKA 118
Query: 148 DEPEWFYL 155
W+ L
Sbjct: 119 PVDGWYKL 126
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
K+ KT+ +T +P+WN+SF + ++ SD K R + + +WD+ R NDF G + +S
Sbjct: 56 KQKTKTIRSTLNPQWNESFTF-KLKPSD-KDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL 113
Query: 63 LCTDEPEWFYL 73
W+ L
Sbjct: 114 XKXPASGWYKL 124
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+KT+ +T +P+WN+SF + ++ SD K R + + +WD+ R NDF G + +S
Sbjct: 59 TKTIRSTLNPQWNESFTF-KLKPSD-KDRRLSVEIWDWDRTTRNDFXGSLSFGVSELXKX 116
Query: 148 DEPEWFYL 155
W+ L
Sbjct: 117 PASGWYKL 124
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 34/56 (60%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
++ L T DP ++++F + GI + ++ ++ T+ + R+ +D +GEV+I LS
Sbjct: 62 TRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG 117
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
+ L T DP ++++F + GI + ++ ++ T+ + R+ +D +GEV+I LS
Sbjct: 63 RVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG 117
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 11 NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
+T +P ++++ Y I S L R+++ +VW + R+G N FLGE I++ S
Sbjct: 70 DTVNPLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDS 119
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 93 NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
+T +P ++++ Y I S L R+++ +VW + R+G N FLGE I++ S
Sbjct: 70 DTVNPLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDS 119
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+KT+ T +PKWN+ F++ R + + V+D R +DFLG+V + L S L T
Sbjct: 64 TKTIKKTLNPKWNEEFYF----RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPL-SHLPT 118
Query: 148 DEP 150
++P
Sbjct: 119 EDP 121
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
KT+ T +PKWN+ F++ R + + V+D R +DFLG+V + L S L T+
Sbjct: 65 KTIKKTLNPKWNEEFYF----RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPL-SHLPTE 119
Query: 67 EP 68
+P
Sbjct: 120 DP 121
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
K+ KT+ + +P+WN++F + ++ SD K R + + +WD+ NDF+G + +S
Sbjct: 69 KQKTKTIKCSLNPEWNETFRF-QLKESD-KDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 126
Query: 63 LCTDEPEWFYL 73
WF L
Sbjct: 127 QKAGVDGWFKL 137
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+KT+ + +P+WN++F + ++ SD K R + + +WD+ NDF+G + +S
Sbjct: 72 TKTIKCSLNPEWNETFRF-QLKESD-KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA 129
Query: 148 DEPEWFYLTKHK 159
WF L +
Sbjct: 130 GVDGWFKLLSQE 141
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS- 61
K K T +P +N+ Y G + L+ R ++++V N FLG + + L
Sbjct: 57 KRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF 116
Query: 62 SLCTDEPEWFYLTKHT 77
+L + +W+ LT T
Sbjct: 117 NLSKETVKWYQLTAAT 132
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLC 146
+K T +P +N+ Y G + L+ R ++++V N FLG + + L +L
Sbjct: 60 TKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLS 119
Query: 147 TDEPEWFYLT 156
+ +W+ LT
Sbjct: 120 KETVKWYQLT 129
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 33.1 bits (74), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 15 PKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT 74
P+WN+ F +P D+ +E+TV+D DFLG+V I L S+ +P + L
Sbjct: 58 PEWNKVFTFPIKDIHDV----LEVTVFDEDGDKPPDFLGKVAIPL-LSIRDGQPNCYVLK 112
Query: 75 KHTLELQF 82
LE F
Sbjct: 113 NKDLEQAF 120
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 97 PKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
P+WN+ F +P D+ +E+TV+D DFLG+V I L S
Sbjct: 58 PEWNKVFTFPIKDIHDV----LEVTVFDEDGDKPPDFLGKVAIPLLS 100
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 33.1 bits (74), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+K T +P +N++F + + ++L R + +V+D+ R+ +D +G+V+++ L
Sbjct: 59 TKVHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAE 117
Query: 148 DEPE 151
P+
Sbjct: 118 QPPD 121
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
K T +P +N++F + + ++L R + +V+D+ R+ +D +G+V+++ L
Sbjct: 60 KVHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ 118
Query: 67 EPE 69
P+
Sbjct: 119 PPD 121
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 33.1 bits (74), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+K T +P +N++F + + ++L R + +V+D+ R+ +D +G+V+++ L
Sbjct: 60 TKVHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAE 118
Query: 148 DEPE 151
P+
Sbjct: 119 QPPD 122
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
K T +P +N++F + + ++L R + +V+D+ R+ +D +G+V+++ L
Sbjct: 61 KVHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ 119
Query: 67 EPE 69
P+
Sbjct: 120 PPD 122
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 8 TLANTNDPKWNQSF-FYPGIRRSDLKLRSIEITVWDYTR 45
T+ NT DPKWNQ + Y G K SI I+VW++ +
Sbjct: 45 TVKNTLDPKWNQHYDLYVG------KTDSITISVWNHKK 77
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 90 TLANTNDPKWNQSF-FYPGIRRSDLKLRSIEITVWDYTR 127
T+ NT DPKWNQ + Y G K SI I+VW++ +
Sbjct: 45 TVKNTLDPKWNQHYDLYVG------KTDSITISVWNHKK 77
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+KT+ + +PKWN+ + R + I V+D R +DFLG+V + L L T
Sbjct: 50 TKTIKKSLNPKWNEEILF----RVLPQRHRILFEVFDENRLTRDDFLGQVDVPL-YPLPT 104
Query: 148 DEPEW 152
+ P
Sbjct: 105 ENPRM 109
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
KT+ + +PKWN+ + R + I V+D R +DFLG+V + L L T+
Sbjct: 51 KTIKKSLNPKWNEEILF----RVLPQRHRILFEVFDENRLTRDDFLGQVDVPL-YPLPTE 105
Query: 67 EPEW 70
P
Sbjct: 106 NPRM 109
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+KT+ + +PKWN+ + R + + V+D R +DFLG+V + L L T
Sbjct: 62 TKTIKKSLNPKWNEEILF----RVHPQQHRLLFEVFDENRLTRDDFLGQVDVPL-YPLPT 116
Query: 148 DEP 150
+ P
Sbjct: 117 ENP 119
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
KT+ + +PKWN+ + R + + V+D R +DFLG+V + L L T+
Sbjct: 63 KTIKKSLNPKWNEEILF----RVHPQQHRLLFEVFDENRLTRDDFLGQVDVPL-YPLPTE 117
Query: 67 EP 68
P
Sbjct: 118 NP 119
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 7/39 (17%)
Query: 8 TLANTNDPKWNQSF-FYPGIRRSDLKLRSIEITVWDYTR 45
T+ NT DPKWNQ + Y G +SD S+ I+VW++ +
Sbjct: 43 TVKNTLDPKWNQHYDLYIG--KSD----SVTISVWNHKK 75
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 7/39 (17%)
Query: 90 TLANTNDPKWNQSF-FYPGIRRSDLKLRSIEITVWDYTR 127
T+ NT DPKWNQ + Y G +SD S+ I+VW++ +
Sbjct: 43 TVKNTLDPKWNQHYDLYIG--KSD----SVTISVWNHKK 75
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 14 DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
+P +N+SF + + ++ + +TV DY + G ND +G+V + +S+
Sbjct: 199 NPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 246
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 96 DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 144
+P +N+SF + + ++ + +TV DY + G ND +G+V + +S+
Sbjct: 199 NPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 246
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
+K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 58 TKVHRKTLNPVFNEQFTFK-VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 112
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 59 KVHRKTLNPVFNEQFTFK-VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 112
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 14 DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
+P +N+SF + + ++ + +TV DY + G ND +G+V + +S+
Sbjct: 74 NPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 96 DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 144
+P +N+SF + + ++ + +TV DY + G ND +G+V + +S+
Sbjct: 74 NPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 14 DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
+P +N+SF + + ++ + +TV DY + G ND +G+V + +S+
Sbjct: 67 NPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 114
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 96 DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 144
+P +N+SF + + ++ + +TV DY + G ND +G+V + +S+
Sbjct: 67 NPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 114
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 14 DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
+P +N+SF + + ++ + +TV DY + G ND +G+V + +S+
Sbjct: 66 NPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 113
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 96 DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 144
+P +N+SF + + ++ + +TV DY + G ND +G+V + +S+
Sbjct: 66 NPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 113
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
+K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 73 TKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 127
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 74 KVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 127
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
+K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 56 TKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 110
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 57 KVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 110
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
+K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 73 TKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 127
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 74 KVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 127
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
+K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 81 TKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 135
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 82 KVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 135
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS 60
G ++ A N +P+W+ F + + DL L + V DY NDF+G+ I +
Sbjct: 536 GSRQTAVITNNGFNPRWDMEFEFE-VTVPDLAL--VRFMVEDYDSSSKNDFIGQSTIPWN 592
Query: 61 S 61
S
Sbjct: 593 S 593
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS 60
G ++ A N +P+W+ F + + DL L + V DY NDF+G+ I +
Sbjct: 534 GSRQTAVITNNGFNPRWDMEFEFE-VTVPDLAL--VRFMVEDYDSSSKNDFIGQSTIPWN 590
Query: 61 S 61
S
Sbjct: 591 S 591
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 88 SKTLANTNDPKW--NQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS 142
++T+ +T +PKW N FF DL + +T++D ++ +DFLG I ++
Sbjct: 423 TRTIQDTLNPKWNFNCQFFI-----KDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVA 474
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 7 KTLANTNDPKW--NQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS 60
+T+ +T +PKW N FF DL + +T++D ++ +DFLG I ++
Sbjct: 424 RTIQDTLNPKWNFNCQFFI-----KDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVA 474
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
++T+ + DP +++ FF+P D K + +TVW+ L SL T
Sbjct: 67 TQTVPDCRDPAFHEHFFFPVQEEDDQK--RLLVTVWNRASQSRQSGLIGCXSFGVKSLLT 124
Query: 148 DEPE---WFYL 155
+ E W+YL
Sbjct: 125 PDKEISGWYYL 135
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
+T+ + DP +++ FF+P D K + +TVW+ L SL T
Sbjct: 68 QTVPDCRDPAFHEHFFFPVQEEDDQK--RLLVTVWNRASQSRQSGLIGCXSFGVKSLLTP 125
Query: 67 EPE---WFYL 73
+ E W+YL
Sbjct: 126 DKEISGWYYL 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,670,948
Number of Sequences: 62578
Number of extensions: 219862
Number of successful extensions: 556
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 85
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)