Query psy6192
Match_columns 174
No_of_seqs 162 out of 1564
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 20:03:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1028|consensus 99.9 1.6E-27 3.5E-32 191.2 12.3 140 2-143 202-393 (421)
2 cd08677 C2A_Synaptotagmin-13 C 99.8 2.2E-18 4.9E-23 115.0 6.6 71 2-73 47-118 (118)
3 KOG2059|consensus 99.7 3E-18 6.4E-23 140.3 8.1 148 4-157 40-253 (800)
4 KOG0696|consensus 99.7 2.9E-19 6.3E-24 140.0 2.0 84 85-170 218-303 (683)
5 cd08677 C2A_Synaptotagmin-13 C 99.7 2E-18 4.4E-23 115.2 5.7 70 85-155 48-118 (118)
6 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.2E-16 2.6E-21 108.8 7.0 71 85-156 54-125 (125)
7 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.7E-16 3.7E-21 108.1 6.8 71 3-74 54-125 (125)
8 cd08381 C2B_PI3K_class_II C2 d 99.7 2E-16 4.4E-21 107.2 7.1 70 85-155 50-121 (122)
9 cd04029 C2A_SLP-4_5 C2 domain 99.7 2.5E-16 5.5E-21 107.2 7.5 72 2-74 53-125 (125)
10 cd08680 C2_Kibra C2 domain fou 99.7 1.3E-16 2.7E-21 108.3 6.0 70 85-155 53-124 (124)
11 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.9E-16 4.1E-21 107.9 6.8 71 85-156 54-125 (125)
12 cd08381 C2B_PI3K_class_II C2 d 99.7 3.1E-16 6.7E-21 106.3 7.4 71 2-73 49-121 (122)
13 cd08395 C2C_Munc13 C2 domain t 99.7 3.9E-16 8.6E-21 105.2 7.4 73 3-76 39-113 (120)
14 cd08407 C2B_Synaptotagmin-13 C 99.7 3.6E-16 7.7E-21 107.9 7.3 71 85-157 55-125 (138)
15 cd08680 C2_Kibra C2 domain fou 99.7 2.8E-16 6.1E-21 106.6 6.5 71 2-73 52-124 (124)
16 cd08392 C2A_SLP-3 C2 domain fi 99.6 4E-16 8.7E-21 106.6 6.7 71 85-156 54-128 (128)
17 cd04028 C2B_RIM1alpha C2 domai 99.6 7.5E-16 1.6E-20 107.1 7.7 72 85-160 68-141 (146)
18 cd08392 C2A_SLP-3 C2 domain fi 99.6 6.5E-16 1.4E-20 105.5 7.3 71 2-73 53-127 (128)
19 cd08389 C2A_Synaptotagmin-14_1 99.6 1.8E-15 3.8E-20 102.9 8.8 72 85-157 52-124 (124)
20 cd08389 C2A_Synaptotagmin-14_1 99.6 1E-15 2.2E-20 104.1 7.5 73 2-75 51-124 (124)
21 cd08395 C2C_Munc13 C2 domain t 99.6 7.2E-16 1.6E-20 103.9 6.3 72 86-158 40-113 (120)
22 cd04028 C2B_RIM1alpha C2 domai 99.6 2E-15 4.3E-20 105.0 7.9 71 3-77 68-140 (146)
23 cd04010 C2B_RasA3 C2 domain se 99.6 1.9E-15 4.1E-20 105.5 7.8 77 85-162 36-127 (148)
24 cd08406 C2B_Synaptotagmin-12 C 99.6 2.1E-15 4.5E-20 104.0 7.8 71 85-157 53-123 (136)
25 cd08387 C2A_Synaptotagmin-8 C2 99.6 2.6E-15 5.6E-20 102.0 6.6 72 85-157 52-124 (124)
26 cd08388 C2A_Synaptotagmin-4-11 99.6 4.3E-15 9.4E-20 101.5 7.7 74 2-75 52-128 (128)
27 cd04031 C2A_RIM1alpha C2 domai 99.6 6E-15 1.3E-19 100.2 7.5 71 85-156 54-125 (125)
28 cd08385 C2A_Synaptotagmin-1-5- 99.6 4.8E-15 1E-19 100.7 6.8 71 85-156 52-123 (124)
29 cd08387 C2A_Synaptotagmin-8 C2 99.6 7.9E-15 1.7E-19 99.6 7.4 72 2-74 51-123 (124)
30 cd04010 C2B_RasA3 C2 domain se 99.6 8.3E-15 1.8E-19 102.3 7.2 75 2-77 35-124 (148)
31 cd04031 C2A_RIM1alpha C2 domai 99.6 9.8E-15 2.1E-19 99.2 7.4 73 2-74 53-125 (125)
32 cd08521 C2A_SLP C2 domain firs 99.6 8.8E-15 1.9E-19 99.1 6.8 70 85-155 53-123 (123)
33 cd08385 C2A_Synaptotagmin-1-5- 99.6 1.1E-14 2.4E-19 98.9 7.1 72 2-74 51-123 (124)
34 cd08386 C2A_Synaptotagmin-7 C2 99.6 1.6E-14 3.5E-19 98.2 7.7 74 2-75 51-125 (125)
35 cd08682 C2_Rab11-FIP_classI C2 99.6 1.4E-14 3E-19 98.7 7.1 73 2-75 31-109 (126)
36 cd08692 C2B_Tac2-N C2 domain s 99.6 4.8E-15 1E-19 101.3 4.8 71 85-157 52-123 (135)
37 cd08682 C2_Rab11-FIP_classI C2 99.6 9E-15 1.9E-19 99.7 6.1 72 85-157 32-109 (126)
38 cd08688 C2_KIAA0528-like C2 do 99.5 9.1E-15 2E-19 97.4 5.8 72 85-157 33-109 (110)
39 cd04030 C2C_KIAA1228 C2 domain 99.5 1.2E-14 2.7E-19 99.0 6.6 71 85-156 54-127 (127)
40 cd08408 C2B_Synaptotagmin-14_1 99.5 3.9E-15 8.4E-20 103.0 3.7 72 85-157 54-125 (138)
41 cd08386 C2A_Synaptotagmin-7 C2 99.5 1.9E-14 4.2E-19 97.8 7.0 73 85-157 52-125 (125)
42 cd08685 C2_RGS-like C2 domain 99.5 9.1E-15 2E-19 98.7 5.3 69 85-155 49-119 (119)
43 cd08388 C2A_Synaptotagmin-4-11 99.5 1.8E-14 3.8E-19 98.5 6.8 73 85-157 53-128 (128)
44 cd08521 C2A_SLP C2 domain firs 99.5 2.6E-14 5.7E-19 96.8 7.2 71 2-73 52-123 (123)
45 cd04030 C2C_KIAA1228 C2 domain 99.5 2.6E-14 5.6E-19 97.4 7.0 72 2-74 53-127 (127)
46 cd08376 C2B_MCTP_PRT C2 domain 99.5 3.5E-14 7.5E-19 95.3 7.3 76 2-80 32-108 (116)
47 cd08390 C2A_Synaptotagmin-15-1 99.5 4E-14 8.7E-19 95.9 7.1 72 3-75 51-123 (123)
48 cd04026 C2_PKC_alpha_gamma C2 99.5 4.8E-14 1E-18 96.7 7.1 79 85-165 51-131 (131)
49 cd08390 C2A_Synaptotagmin-15-1 99.5 3.2E-14 7E-19 96.4 6.1 71 86-157 52-123 (123)
50 cd08688 C2_KIAA0528-like C2 do 99.5 4.8E-14 1E-18 93.9 6.7 73 2-75 32-109 (110)
51 KOG1013|consensus 99.5 1.5E-14 3.3E-19 109.8 4.2 140 3-143 131-328 (362)
52 cd04022 C2A_MCTP_PRT_plant C2 99.5 5.1E-14 1.1E-18 96.1 6.4 75 85-160 33-111 (127)
53 KOG0696|consensus 99.5 4E-15 8.6E-20 117.0 0.9 73 2-76 217-289 (683)
54 cd08401 C2A_RasA2_RasA3 C2 dom 99.5 5.5E-14 1.2E-18 95.1 6.4 69 86-158 36-105 (121)
55 cd04011 C2B_Ferlin C2 domain s 99.5 6.5E-14 1.4E-18 93.3 6.6 74 1-75 31-110 (111)
56 cd08410 C2B_Synaptotagmin-17 C 99.5 1.8E-14 3.9E-19 99.4 3.9 73 85-158 52-124 (135)
57 cd08685 C2_RGS-like C2 domain 99.5 5.5E-14 1.2E-18 94.9 6.1 69 3-73 49-119 (119)
58 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 7.4E-14 1.6E-18 99.1 6.8 75 2-76 64-139 (162)
59 cd08378 C2B_MCTP_PRT_plant C2 99.5 1.3E-13 2.9E-18 93.3 7.5 71 85-159 29-105 (121)
60 cd08379 C2D_MCTP_PRT_plant C2 99.5 9.3E-14 2E-18 94.4 6.7 71 85-159 36-113 (126)
61 cd08407 C2B_Synaptotagmin-13 C 99.5 4.6E-14 1E-18 97.4 5.2 59 2-61 54-112 (138)
62 cd08404 C2B_Synaptotagmin-4 C2 99.5 2.6E-14 5.7E-19 98.6 4.0 72 85-158 53-124 (136)
63 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 7.1E-14 1.5E-18 99.2 6.2 73 85-157 65-138 (162)
64 cd08379 C2D_MCTP_PRT_plant C2 99.5 1.1E-13 2.3E-18 94.1 6.7 72 1-76 34-112 (126)
65 cd04039 C2_PSD C2 domain prese 99.5 9.3E-14 2E-18 92.2 6.1 62 2-65 37-98 (108)
66 cd04016 C2_Tollip C2 domain pr 99.5 1.4E-13 3E-18 93.0 7.0 69 85-157 34-105 (121)
67 cd08378 C2B_MCTP_PRT_plant C2 99.5 2.4E-13 5.2E-18 92.0 7.8 72 2-77 28-105 (121)
68 cd08409 C2B_Synaptotagmin-15 C 99.5 3.2E-14 6.9E-19 98.4 3.5 72 85-157 52-124 (137)
69 cd04016 C2_Tollip C2 domain pr 99.5 2.4E-13 5.1E-18 91.9 7.7 71 2-76 33-106 (121)
70 cd08401 C2A_RasA2_RasA3 C2 dom 99.5 2.5E-13 5.3E-18 92.0 7.7 70 3-76 35-105 (121)
71 cd04022 C2A_MCTP_PRT_plant C2 99.5 1.6E-13 3.5E-18 93.6 6.8 74 2-76 32-109 (127)
72 cd08384 C2B_Rabphilin_Doc2 C2 99.5 5.8E-14 1.3E-18 96.5 4.5 72 85-158 51-122 (133)
73 cd08675 C2B_RasGAP C2 domain s 99.5 2.6E-13 5.7E-18 93.7 7.6 75 85-160 35-123 (137)
74 cd04025 C2B_RasA1_RasA4 C2 dom 99.5 2.3E-13 5E-18 92.3 7.2 71 86-159 34-105 (123)
75 cd04025 C2B_RasA1_RasA4 C2 dom 99.5 3.4E-13 7.4E-18 91.4 8.0 72 2-76 32-104 (123)
76 cd08690 C2_Freud-1 C2 domain f 99.5 2.7E-13 5.9E-18 95.0 7.5 73 2-75 41-121 (155)
77 cd04050 C2B_Synaptotagmin-like 99.5 1.4E-13 3E-18 90.9 5.6 70 85-160 33-105 (105)
78 cd08678 C2_C21orf25-like C2 do 99.5 3.5E-13 7.6E-18 91.8 7.7 71 2-76 31-102 (126)
79 KOG1328|consensus 99.4 3.9E-14 8.6E-19 116.9 3.4 61 85-146 987-1049(1103)
80 cd04018 C2C_Ferlin C2 domain t 99.4 1.6E-13 3.5E-18 96.1 6.0 71 85-157 47-125 (151)
81 cd08408 C2B_Synaptotagmin-14_1 99.4 4.1E-14 8.8E-19 97.9 2.8 70 3-73 54-123 (138)
82 KOG1030|consensus 99.4 1.2E-13 2.7E-18 96.1 5.1 61 1-65 37-97 (168)
83 cd04041 C2A_fungal C2 domain f 99.4 1.2E-13 2.7E-18 92.0 4.9 70 85-157 38-108 (111)
84 cd04036 C2_cPLA2 C2 domain pre 99.4 2.7E-13 5.8E-18 91.5 6.5 71 2-76 35-106 (119)
85 cd04036 C2_cPLA2 C2 domain pre 99.4 2.5E-13 5.4E-18 91.6 6.3 70 85-158 36-106 (119)
86 cd08690 C2_Freud-1 C2 domain f 99.4 3.8E-13 8.2E-18 94.3 7.2 72 85-157 42-121 (155)
87 cd04018 C2C_Ferlin C2 domain t 99.4 3.1E-13 6.7E-18 94.6 6.7 65 1-67 45-109 (151)
88 cd08373 C2A_Ferlin C2 domain f 99.4 5.5E-13 1.2E-17 90.9 7.8 73 2-75 26-99 (127)
89 cd08376 C2B_MCTP_PRT C2 domain 99.4 2.8E-13 6.1E-18 90.9 6.1 71 85-158 33-104 (116)
90 cd08402 C2B_Synaptotagmin-1 C2 99.4 9.3E-14 2E-18 95.9 3.8 72 85-158 53-124 (136)
91 cd08675 C2B_RasGAP C2 domain s 99.4 7.4E-13 1.6E-17 91.5 7.9 75 2-77 34-122 (137)
92 cd08405 C2B_Synaptotagmin-7 C2 99.4 1.3E-13 2.7E-18 95.2 4.1 71 85-157 53-123 (136)
93 cd08373 C2A_Ferlin C2 domain f 99.4 6.3E-13 1.4E-17 90.6 7.5 73 85-158 27-100 (127)
94 cd04041 C2A_fungal C2 domain f 99.4 3.1E-13 6.6E-18 90.1 5.6 69 3-74 38-107 (111)
95 cd08678 C2_C21orf25-like C2 do 99.4 3.1E-13 6.7E-18 92.1 5.7 70 85-158 32-102 (126)
96 cd08404 C2B_Synaptotagmin-4 C2 99.4 1.1E-13 2.3E-18 95.6 3.4 71 3-75 53-123 (136)
97 cd08406 C2B_Synaptotagmin-12 C 99.4 2.5E-13 5.4E-18 93.7 5.1 69 3-73 53-121 (136)
98 cd04011 C2B_Ferlin C2 domain s 99.4 3.5E-13 7.7E-18 89.8 5.5 72 85-157 33-110 (111)
99 cd08394 C2A_Munc13 C2 domain f 99.4 4E-13 8.6E-18 90.7 5.7 71 85-161 32-105 (127)
100 cd08384 C2B_Rabphilin_Doc2 C2 99.4 2.1E-13 4.5E-18 93.7 4.1 70 3-74 51-120 (133)
101 cd08681 C2_fungal_Inn1p-like C 99.4 5E-13 1.1E-17 89.9 5.9 76 85-164 34-112 (118)
102 cd04042 C2A_MCTP_PRT C2 domain 99.4 6.3E-13 1.4E-17 89.9 6.2 71 86-160 35-106 (121)
103 cd04050 C2B_Synaptotagmin-like 99.4 6.7E-13 1.4E-17 87.6 6.1 71 1-77 31-104 (105)
104 cd04039 C2_PSD C2 domain prese 99.4 3.4E-13 7.5E-18 89.4 4.8 61 85-147 38-98 (108)
105 cd08692 C2B_Tac2-N C2 domain s 99.4 5.3E-13 1.1E-17 91.3 5.5 70 2-73 51-121 (135)
106 cd08409 C2B_Synaptotagmin-15 C 99.4 3E-13 6.6E-18 93.4 3.9 71 2-73 51-122 (137)
107 cd08410 C2B_Synaptotagmin-17 C 99.4 2.1E-13 4.6E-18 94.0 3.1 71 3-74 52-122 (135)
108 cd04042 C2A_MCTP_PRT C2 domain 99.4 1.3E-12 2.8E-17 88.4 6.9 70 3-76 34-104 (121)
109 cd08403 C2B_Synaptotagmin-3-5- 99.4 3.4E-13 7.5E-18 92.8 4.1 71 85-157 52-122 (134)
110 cd08400 C2_Ras_p21A1 C2 domain 99.4 2.1E-12 4.5E-17 88.0 7.9 70 86-159 36-106 (126)
111 cd04033 C2_NEDD4_NEDD4L C2 dom 99.4 1.6E-12 3.5E-17 89.2 6.5 70 85-158 40-116 (133)
112 KOG1030|consensus 99.4 5.4E-13 1.2E-17 93.0 4.1 59 85-147 39-97 (168)
113 cd04024 C2A_Synaptotagmin-like 99.4 2.4E-12 5.2E-17 87.7 7.2 72 2-76 35-110 (128)
114 cd04019 C2C_MCTP_PRT_plant C2 99.4 1.9E-12 4.2E-17 90.7 6.8 72 85-159 33-110 (150)
115 cd08405 C2B_Synaptotagmin-7 C2 99.4 4.1E-13 9E-18 92.6 3.1 69 3-73 53-121 (136)
116 cd04045 C2C_Tricalbin-like C2 99.4 1.7E-12 3.7E-17 87.7 6.0 78 85-166 35-112 (120)
117 cd08394 C2A_Munc13 C2 domain f 99.4 2.5E-12 5.4E-17 86.9 6.7 68 2-75 31-101 (127)
118 cd08681 C2_fungal_Inn1p-like C 99.4 2.6E-12 5.7E-17 86.4 6.8 71 2-76 33-105 (118)
119 cd08382 C2_Smurf-like C2 domai 99.4 3E-12 6.5E-17 86.9 7.0 71 85-160 34-108 (123)
120 cd04048 C2A_Copine C2 domain f 99.4 1.7E-12 3.7E-17 87.6 5.8 71 3-76 40-115 (120)
121 cd08400 C2_Ras_p21A1 C2 domain 99.3 5.1E-12 1.1E-16 86.1 8.1 70 3-76 35-105 (126)
122 cd08391 C2A_C2C_Synaptotagmin_ 99.3 2.2E-12 4.8E-17 87.0 6.2 70 85-158 40-110 (121)
123 cd04026 C2_PKC_alpha_gamma C2 99.3 3.7E-12 8E-17 87.2 7.4 73 2-76 50-122 (131)
124 cd04054 C2A_Rasal1_RasA4 C2 do 99.3 3.5E-12 7.7E-17 86.3 7.1 68 86-157 35-104 (121)
125 cd04048 C2A_Copine C2 domain f 99.3 1.9E-12 4.1E-17 87.5 5.6 71 85-158 40-115 (120)
126 cd08402 C2B_Synaptotagmin-1 C2 99.3 5.8E-13 1.3E-17 91.9 3.2 69 3-73 53-121 (136)
127 cd04043 C2_Munc13_fungal C2 do 99.3 3.1E-12 6.7E-17 87.0 6.8 71 86-159 38-112 (126)
128 cd08382 C2_Smurf-like C2 domai 99.3 4.3E-12 9.4E-17 86.1 7.4 70 2-76 33-106 (123)
129 cd04014 C2_PKC_epsilon C2 doma 99.3 3.2E-12 7E-17 87.7 6.7 69 86-159 49-120 (132)
130 cd08403 C2B_Synaptotagmin-3-5- 99.3 7.6E-13 1.6E-17 91.1 3.5 69 3-73 52-120 (134)
131 cd04032 C2_Perforin C2 domain 99.3 4.4E-12 9.5E-17 86.4 7.1 61 1-63 58-118 (127)
132 cd04024 C2A_Synaptotagmin-like 99.3 3.2E-12 6.8E-17 87.1 6.5 71 85-158 36-110 (128)
133 cd00276 C2B_Synaptotagmin C2 d 99.3 7.1E-13 1.5E-17 91.0 3.2 72 85-158 52-123 (134)
134 cd04049 C2_putative_Elicitor-r 99.3 6E-12 1.3E-16 85.4 7.7 78 2-80 33-113 (124)
135 cd04052 C2B_Tricalbin-like C2 99.3 1.5E-12 3.3E-17 86.8 4.7 74 86-164 27-102 (111)
136 cd08676 C2A_Munc13-like C2 dom 99.3 2.8E-12 6E-17 90.0 6.2 64 85-155 90-153 (153)
137 cd04043 C2_Munc13_fungal C2 do 99.3 6.2E-12 1.3E-16 85.5 7.5 72 3-77 37-112 (126)
138 cd08391 C2A_C2C_Synaptotagmin_ 99.3 6E-12 1.3E-16 84.9 7.1 70 2-75 39-109 (121)
139 cd04009 C2B_Munc13-like C2 dom 99.3 3.5E-12 7.5E-17 87.7 6.0 62 2-64 55-118 (133)
140 cd04019 C2C_MCTP_PRT_plant C2 99.3 6.5E-12 1.4E-16 88.0 7.3 73 2-77 32-110 (150)
141 cd04049 C2_putative_Elicitor-r 99.3 5.6E-12 1.2E-16 85.6 6.6 72 86-158 35-109 (124)
142 cd04033 C2_NEDD4_NEDD4L C2 dom 99.3 8E-12 1.7E-16 85.7 6.5 70 3-76 40-116 (133)
143 cd04014 C2_PKC_epsilon C2 doma 99.3 1.4E-11 3.1E-16 84.5 7.6 69 4-77 49-120 (132)
144 cd04032 C2_Perforin C2 domain 99.3 1.1E-11 2.4E-16 84.4 6.9 60 85-146 60-119 (127)
145 KOG1028|consensus 99.3 5.9E-12 1.3E-16 101.6 6.4 73 85-158 203-276 (421)
146 cd04035 C2A_Rabphilin_Doc2 C2 99.3 1.1E-11 2.5E-16 83.9 6.9 66 2-68 52-117 (123)
147 cd04009 C2B_Munc13-like C2 dom 99.3 9.4E-12 2E-16 85.5 6.4 63 85-148 56-120 (133)
148 cd08676 C2A_Munc13-like C2 dom 99.3 1.4E-11 3E-16 86.4 7.1 63 4-73 91-153 (153)
149 cd04038 C2_ArfGAP C2 domain pr 99.3 1.2E-11 2.6E-16 86.1 6.7 63 1-67 32-94 (145)
150 cd00276 C2B_Synaptotagmin C2 d 99.3 2.1E-12 4.5E-17 88.6 2.8 72 3-76 52-123 (134)
151 cd04045 C2C_Tricalbin-like C2 99.3 1.5E-11 3.2E-16 83.1 6.6 71 3-77 35-105 (120)
152 cd04054 C2A_Rasal1_RasA4 C2 do 99.3 1.8E-11 3.9E-16 82.8 7.0 68 4-75 35-104 (121)
153 cd08377 C2C_MCTP_PRT C2 domain 99.3 1.9E-11 4.2E-16 82.2 7.0 69 86-159 35-103 (119)
154 cd04040 C2D_Tricalbin-like C2 99.3 2.8E-11 6.1E-16 80.9 7.7 71 4-77 34-105 (115)
155 cd04015 C2_plant_PLD C2 domain 99.3 2.7E-11 5.9E-16 85.6 7.8 68 86-158 72-140 (158)
156 cd08375 C2_Intersectin C2 doma 99.3 1.1E-11 2.4E-16 85.5 5.6 59 85-146 48-106 (136)
157 cd04040 C2D_Tricalbin-like C2 99.3 1.5E-11 3.3E-16 82.2 6.2 72 86-160 34-106 (115)
158 cd04017 C2D_Ferlin C2 domain f 99.2 3.9E-11 8.4E-16 82.7 7.9 76 1-76 32-118 (135)
159 cd08686 C2_ABR C2 domain in th 99.2 2.2E-11 4.9E-16 81.2 6.4 54 3-61 32-92 (118)
160 cd04027 C2B_Munc13 C2 domain s 99.2 2.6E-11 5.7E-16 82.7 7.0 71 85-160 34-115 (127)
161 cd08375 C2_Intersectin C2 doma 99.2 1.7E-11 3.7E-16 84.6 6.0 60 2-64 47-106 (136)
162 cd08691 C2_NEDL1-like C2 domai 99.2 3.9E-11 8.4E-16 82.8 7.6 70 2-76 45-122 (137)
163 cd08377 C2C_MCTP_PRT C2 domain 99.2 4.5E-11 9.7E-16 80.4 7.4 70 2-76 33-102 (119)
164 cd04017 C2D_Ferlin C2 domain f 99.2 4.1E-11 8.9E-16 82.6 7.3 79 85-164 34-125 (135)
165 cd04035 C2A_Rabphilin_Doc2 C2 99.2 2.8E-11 6E-16 82.0 6.1 62 85-147 53-114 (123)
166 cd04052 C2B_Tricalbin-like C2 99.2 2.5E-11 5.4E-16 80.9 5.7 68 3-74 26-95 (111)
167 cd04046 C2_Calpain C2 domain p 99.2 5.9E-11 1.3E-15 80.8 7.7 68 1-74 34-101 (126)
168 cd04038 C2_ArfGAP C2 domain pr 99.2 1.9E-11 4E-16 85.2 5.2 60 85-148 34-93 (145)
169 cd08383 C2A_RasGAP C2 domain ( 99.2 4E-11 8.7E-16 80.4 6.6 70 86-158 32-101 (117)
170 cd08691 C2_NEDL1-like C2 domai 99.2 3.8E-11 8.2E-16 82.8 6.5 72 85-161 46-125 (137)
171 cd04051 C2_SRC2_like C2 domain 99.2 3.8E-11 8.3E-16 81.5 6.3 74 2-76 33-115 (125)
172 cd04051 C2_SRC2_like C2 domain 99.2 3.7E-11 8E-16 81.6 6.2 73 85-158 34-115 (125)
173 cd04027 C2B_Munc13 C2 domain s 99.2 5.7E-11 1.2E-15 81.0 7.1 70 2-76 33-113 (127)
174 cd04046 C2_Calpain C2 domain p 99.2 1.3E-10 2.9E-15 79.1 8.1 66 86-157 37-102 (126)
175 cd04037 C2E_Ferlin C2 domain f 99.2 4.9E-11 1.1E-15 81.0 5.9 58 4-64 36-93 (124)
176 cd04037 C2E_Ferlin C2 domain f 99.2 9E-11 2E-15 79.7 6.6 58 86-146 36-93 (124)
177 cd04021 C2_E3_ubiquitin_ligase 99.2 1.1E-10 2.5E-15 79.3 7.1 67 3-74 35-107 (125)
178 cd08374 C2F_Ferlin C2 domain s 99.2 5.7E-11 1.2E-15 81.2 5.4 64 84-148 39-125 (133)
179 cd04015 C2_plant_PLD C2 domain 99.2 1.5E-10 3.3E-15 81.8 7.6 68 4-76 72-140 (158)
180 cd04044 C2A_Tricalbin-like C2 99.1 6.6E-11 1.4E-15 80.1 5.3 77 85-165 38-117 (124)
181 cd04013 C2_SynGAP_like C2 doma 99.1 1.2E-10 2.6E-15 80.9 6.1 70 86-159 41-115 (146)
182 cd04044 C2A_Tricalbin-like C2 99.1 1.3E-10 2.8E-15 78.6 6.1 62 2-67 37-98 (124)
183 cd08383 C2A_RasGAP C2 domain ( 99.1 2.9E-10 6.3E-15 76.1 7.3 71 3-76 31-101 (117)
184 cd08374 C2F_Ferlin C2 domain s 99.1 1.2E-10 2.6E-15 79.6 5.3 63 2-65 39-124 (133)
185 cd08686 C2_ABR C2 domain in th 99.1 1.8E-10 3.9E-15 76.9 5.8 53 85-142 32-91 (118)
186 cd04021 C2_E3_ubiquitin_ligase 99.1 1.9E-10 4E-15 78.3 5.5 70 85-159 35-110 (125)
187 COG5038 Ca2+-dependent lipid-b 99.1 4.2E-10 9.1E-15 97.6 8.5 143 4-156 473-679 (1227)
188 cd04047 C2B_Copine C2 domain s 99.1 2E-10 4.2E-15 76.3 5.1 60 3-64 39-100 (110)
189 cd04047 C2B_Copine C2 domain s 99.1 1.6E-10 3.5E-15 76.7 4.5 57 86-146 40-100 (110)
190 cd04013 C2_SynGAP_like C2 doma 99.0 1.1E-09 2.5E-14 76.1 7.4 69 5-77 42-115 (146)
191 cd08684 C2A_Tac2-N C2 domain f 99.0 1.6E-10 3.5E-15 72.1 2.1 73 80-155 31-103 (103)
192 cd00275 C2_PLC_like C2 domain 99.0 1.5E-09 3.3E-14 73.8 6.9 69 2-76 42-111 (128)
193 PLN03008 Phospholipase D delta 99.0 7.4E-10 1.6E-14 94.3 5.8 79 77-160 80-161 (868)
194 cd00275 C2_PLC_like C2 domain 99.0 1.3E-09 2.8E-14 74.1 6.0 68 85-158 43-111 (128)
195 COG5038 Ca2+-dependent lipid-b 99.0 6.5E-09 1.4E-13 90.4 10.5 67 85-154 1074-1140(1227)
196 PLN03200 cellulose synthase-in 98.9 9.3E-10 2E-14 101.3 5.3 76 85-163 2012-2089(2102)
197 PLN03008 Phospholipase D delta 98.9 1.9E-09 4.2E-14 91.9 6.7 69 3-76 90-159 (868)
198 PLN03200 cellulose synthase-in 98.8 3.8E-09 8.2E-14 97.4 5.4 71 2-75 2011-2082(2102)
199 PF00168 C2: C2 domain; Inter 98.8 3.1E-09 6.8E-14 66.5 3.3 51 3-56 35-85 (85)
200 cd08684 C2A_Tac2-N C2 domain f 98.8 1.2E-09 2.6E-14 68.3 0.9 66 4-72 37-102 (103)
201 smart00239 C2 Protein kinase C 98.8 1.6E-08 3.5E-13 64.9 6.2 61 2-65 35-95 (101)
202 KOG1328|consensus 98.8 1.9E-09 4.1E-14 89.8 2.1 77 85-164 178-290 (1103)
203 cd00030 C2 C2 domain. The C2 d 98.8 1.9E-08 4.1E-13 64.2 5.8 68 85-155 33-102 (102)
204 cd00030 C2 C2 domain. The C2 d 98.8 3.2E-08 6.9E-13 63.2 6.7 69 2-73 32-102 (102)
205 PLN02952 phosphoinositide phos 98.8 1.7E-08 3.7E-13 84.2 6.4 70 2-76 513-582 (599)
206 PF00168 C2: C2 domain; Inter 98.7 7.6E-09 1.6E-13 64.8 2.9 50 86-138 36-85 (85)
207 PLN02223 phosphoinositide phos 98.7 2E-08 4.4E-13 82.4 6.1 68 85-157 452-519 (537)
208 smart00239 C2 Protein kinase C 98.7 2.7E-08 6E-13 63.8 5.5 61 85-148 36-96 (101)
209 PLN02952 phosphoinositide phos 98.7 2.6E-08 5.5E-13 83.1 6.6 68 85-157 514-581 (599)
210 PLN02223 phosphoinositide phos 98.7 1.8E-08 3.9E-13 82.6 5.5 69 3-76 452-520 (537)
211 KOG1327|consensus 98.6 8.5E-08 1.8E-12 78.2 6.9 135 5-146 44-236 (529)
212 PLN02222 phosphoinositide phos 98.6 6.3E-08 1.4E-12 80.6 5.7 69 2-75 495-563 (581)
213 PLN02230 phosphoinositide phos 98.6 5.5E-08 1.2E-12 81.1 4.9 69 3-76 513-581 (598)
214 PLN02230 phosphoinositide phos 98.5 1.1E-07 2.3E-12 79.4 5.2 68 85-157 513-580 (598)
215 KOG0169|consensus 98.5 7E-08 1.5E-12 81.1 3.8 60 3-65 658-718 (746)
216 PLN02222 phosphoinositide phos 98.5 1.5E-07 3.1E-12 78.5 5.2 68 85-157 496-563 (581)
217 KOG1326|consensus 98.5 9.2E-08 2E-12 82.2 4.1 54 5-61 650-703 (1105)
218 KOG0169|consensus 98.4 1.9E-07 4.1E-12 78.5 4.0 68 85-157 658-726 (746)
219 KOG1011|consensus 98.4 1.3E-07 2.7E-12 78.5 2.5 72 85-161 328-410 (1283)
220 KOG0905|consensus 98.4 2.2E-07 4.8E-12 81.2 2.9 74 3-76 1562-1636(1639)
221 KOG0905|consensus 98.4 2.5E-07 5.4E-12 80.9 3.2 73 85-157 1562-1635(1639)
222 PLN02228 Phosphoinositide phos 98.4 6.3E-07 1.4E-11 74.5 5.2 69 3-76 475-544 (567)
223 KOG1031|consensus 98.3 3.3E-07 7.1E-12 75.3 2.9 81 85-166 37-131 (1169)
224 PLN02228 Phosphoinositide phos 98.3 1.3E-06 2.7E-11 72.8 5.3 68 85-157 475-543 (567)
225 KOG1264|consensus 98.2 1.8E-06 3.9E-11 73.3 5.0 61 1-64 1101-1162(1267)
226 KOG2059|consensus 98.1 2.3E-06 5E-11 71.6 4.0 68 85-157 39-107 (800)
227 PLN02270 phospholipase D alpha 98.0 9E-06 1.9E-10 69.8 5.6 69 86-159 61-131 (808)
228 KOG1326|consensus 98.0 1.6E-05 3.4E-10 68.9 6.1 142 1-142 237-456 (1105)
229 KOG1031|consensus 97.9 5.7E-06 1.2E-10 68.2 2.8 61 3-64 37-98 (1169)
230 KOG1011|consensus 97.8 2.2E-05 4.7E-10 65.6 4.7 73 2-75 1163-1237(1283)
231 PLN02964 phosphatidylserine de 97.8 3E-05 6.5E-10 65.7 4.8 97 45-149 46-142 (644)
232 cd08683 C2_C2cd3 C2 domain fou 97.7 3.2E-05 6.9E-10 52.1 3.4 70 85-155 49-143 (143)
233 KOG1264|consensus 97.7 3.4E-05 7.4E-10 65.9 4.1 59 86-147 1104-1163(1267)
234 KOG1013|consensus 97.7 3.6E-05 7.8E-10 59.4 3.3 79 2-106 270-348 (362)
235 KOG2060|consensus 97.6 5E-05 1.1E-09 59.5 2.5 73 85-161 308-383 (405)
236 PLN02270 phospholipase D alpha 97.5 0.00024 5.1E-09 61.4 5.7 68 4-76 61-130 (808)
237 PLN02964 phosphatidylserine de 97.4 7.2E-05 1.6E-09 63.5 1.9 60 2-64 80-139 (644)
238 PLN02352 phospholipase D epsil 97.3 0.00038 8.1E-09 59.9 4.9 60 92-159 53-114 (758)
239 cd08683 C2_C2cd3 C2 domain fou 97.3 0.00046 1E-08 46.6 4.0 72 1-73 47-143 (143)
240 cd08689 C2_fungal_Pkc1p C2 dom 97.0 0.00064 1.4E-08 44.4 2.6 52 85-145 36-87 (109)
241 cd08689 C2_fungal_Pkc1p C2 dom 97.0 0.001 2.2E-08 43.5 3.4 52 3-63 36-87 (109)
242 cd08397 C2_PI3K_class_III C2 d 96.8 0.0044 9.4E-08 43.8 5.7 57 5-62 50-107 (159)
243 cd08397 C2_PI3K_class_III C2 d 96.6 0.006 1.3E-07 43.1 5.5 57 87-144 50-107 (159)
244 cd08380 C2_PI3K_like C2 domain 95.9 0.023 5E-07 39.9 5.4 56 6-62 49-107 (156)
245 KOG1265|consensus 95.8 0.028 6E-07 49.2 6.3 55 86-146 740-796 (1189)
246 PF00792 PI3K_C2: Phosphoinosi 95.8 0.016 3.5E-07 40.0 4.1 57 5-62 23-85 (142)
247 PF00792 PI3K_C2: Phosphoinosi 95.7 0.018 3.9E-07 39.8 4.2 57 87-144 23-85 (142)
248 cd08398 C2_PI3K_class_I_alpha 95.7 0.064 1.4E-06 37.9 6.9 49 95-144 53-106 (158)
249 KOG1327|consensus 95.6 0.014 3.1E-07 48.4 3.7 60 4-64 176-236 (529)
250 PF14429 DOCK-C2: C2 domain in 95.5 0.038 8.3E-07 39.9 5.4 58 85-143 60-120 (184)
251 cd08380 C2_PI3K_like C2 domain 95.5 0.036 7.9E-07 38.9 5.1 51 94-145 55-108 (156)
252 cd08695 C2_Dock-B C2 domains f 95.4 0.057 1.2E-06 39.2 5.8 55 4-59 55-111 (189)
253 cd08693 C2_PI3K_class_I_beta_d 95.4 0.054 1.2E-06 38.8 5.7 57 5-62 47-120 (173)
254 cd08695 C2_Dock-B C2 domains f 95.3 0.041 9E-07 39.9 4.9 57 86-143 55-113 (189)
255 PF12416 DUF3668: Cep120 prote 95.2 0.061 1.3E-06 42.7 5.8 71 87-158 32-114 (340)
256 PLN02352 phospholipase D epsil 95.1 0.041 8.8E-07 47.8 5.0 59 10-76 53-113 (758)
257 KOG3837|consensus 95.1 0.028 6.1E-07 45.2 3.7 74 85-159 405-489 (523)
258 KOG3837|consensus 95.0 0.029 6.2E-07 45.1 3.6 74 2-76 404-488 (523)
259 cd08694 C2_Dock-A C2 domains f 94.8 0.12 2.6E-06 37.7 6.1 55 4-59 55-113 (196)
260 cd08693 C2_PI3K_class_I_beta_d 94.8 0.1 2.3E-06 37.4 5.7 57 87-144 47-120 (173)
261 cd08694 C2_Dock-A C2 domains f 94.7 0.08 1.7E-06 38.6 5.0 56 86-142 55-114 (196)
262 cd08398 C2_PI3K_class_I_alpha 94.7 0.11 2.4E-06 36.6 5.7 56 5-62 46-106 (158)
263 cd08399 C2_PI3K_class_I_gamma 94.6 0.12 2.7E-06 37.2 5.7 56 5-61 49-121 (178)
264 PF14429 DOCK-C2: C2 domain in 94.5 0.1 2.3E-06 37.6 5.3 57 4-61 61-120 (184)
265 KOG1265|consensus 94.5 0.03 6.6E-07 49.0 2.7 57 2-64 738-796 (1189)
266 cd08399 C2_PI3K_class_I_gamma 94.1 0.15 3.2E-06 36.8 5.1 57 87-144 49-122 (178)
267 PF15627 CEP76-C2: CEP76 C2 do 93.8 0.15 3.3E-06 35.8 4.7 64 1-65 44-118 (156)
268 cd08679 C2_DOCK180_related C2 93.5 0.27 5.9E-06 35.3 5.7 55 88-143 56-115 (178)
269 cd04012 C2A_PI3K_class_II C2 d 92.9 0.27 5.9E-06 35.1 4.9 49 95-144 61-119 (171)
270 cd08679 C2_DOCK180_related C2 92.8 0.58 1.2E-05 33.6 6.6 55 6-61 56-115 (178)
271 cd04012 C2A_PI3K_class_II C2 d 92.7 0.26 5.7E-06 35.2 4.7 48 14-62 62-119 (171)
272 cd08696 C2_Dock-C C2 domains f 92.4 0.43 9.3E-06 34.4 5.4 58 85-143 55-118 (179)
273 cd08696 C2_Dock-C C2 domains f 91.1 1.1 2.5E-05 32.2 6.4 56 4-60 56-117 (179)
274 cd08697 C2_Dock-D C2 domains f 90.9 1.3 2.8E-05 32.1 6.5 56 4-60 58-122 (185)
275 PF12416 DUF3668: Cep120 prote 90.4 0.71 1.5E-05 36.7 5.3 73 3-76 30-114 (340)
276 smart00142 PI3K_C2 Phosphoinos 90.2 0.59 1.3E-05 30.2 4.0 40 5-45 52-92 (100)
277 smart00142 PI3K_C2 Phosphoinos 90.1 0.49 1.1E-05 30.6 3.5 38 88-126 53-91 (100)
278 KOG2060|consensus 89.8 0.092 2E-06 41.8 -0.2 71 3-77 308-381 (405)
279 PF15627 CEP76-C2: CEP76 C2 do 89.7 1.3 2.7E-05 31.3 5.5 64 85-149 46-120 (156)
280 cd08697 C2_Dock-D C2 domains f 89.3 1.3 2.8E-05 32.1 5.5 58 85-143 57-123 (185)
281 PF10358 NT-C2: N-terminal C2 85.5 0.9 1.9E-05 31.1 2.8 52 13-65 50-107 (143)
282 KOG0906|consensus 83.6 3.7 8.1E-05 35.4 6.0 45 98-143 78-123 (843)
283 PF10358 NT-C2: N-terminal C2 80.4 2 4.4E-05 29.2 3.0 53 94-147 49-107 (143)
284 PF11618 DUF3250: Protein of u 71.9 4.5 9.8E-05 26.6 2.7 59 4-65 13-76 (107)
285 cd08687 C2_PKN-like C2 domain 64.0 11 0.00023 24.2 3.0 41 13-61 31-71 (98)
286 PF15625 CC2D2AN-C2: CC2D2A N- 55.2 35 0.00077 24.2 4.9 46 95-145 62-107 (168)
287 PF07162 B9-C2: Ciliary basal 52.1 33 0.00072 24.3 4.4 46 14-60 56-102 (168)
288 PF07162 B9-C2: Ciliary basal 42.8 57 0.0012 23.1 4.3 46 96-142 56-102 (168)
289 KOG1329|consensus 34.0 58 0.0013 29.5 3.8 69 85-157 151-221 (887)
290 PF14909 SPATA6: Spermatogenes 34.0 73 0.0016 22.1 3.5 62 1-63 30-100 (140)
291 PF15625 CC2D2AN-C2: CC2D2A N- 33.4 1.2E+02 0.0025 21.5 4.7 41 16-61 65-105 (168)
292 PF01060 DUF290: Transthyretin 33.3 85 0.0018 19.1 3.5 23 35-57 13-35 (80)
293 KOG0906|consensus 32.6 62 0.0013 28.4 3.6 44 16-60 78-122 (843)
294 KOG4028|consensus 29.5 66 0.0014 22.0 2.7 27 34-60 74-100 (175)
295 PTZ00447 apical membrane antig 28.1 1.3E+02 0.0029 24.3 4.5 44 115-159 114-160 (508)
296 PHA02708 hypothetical protein; 26.7 1.2E+02 0.0026 20.7 3.5 26 116-141 96-121 (148)
297 KOG0904|consensus 25.5 47 0.001 30.2 1.8 39 4-43 382-421 (1076)
No 1
>KOG1028|consensus
Probab=99.95 E-value=1.6e-27 Score=191.19 Aligned_cols=140 Identities=28% Similarity=0.498 Sum_probs=123.4
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEeccc----
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTKH---- 76 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~~---- 76 (174)
+|.+|++.++|+||.|||+|.|. |+.+++...+|.+.|||+|+++++++||++.++|..+..... ..|.+|.+.
T Consensus 202 ~k~kT~v~r~tlnP~fnEtf~f~-v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~ 280 (421)
T KOG1028|consen 202 GKFKTRVHRKTLNPVFNETFRFE-VPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS 280 (421)
T ss_pred CcceeeeeecCcCCccccceEee-cCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCc
Confidence 57899999999999999999998 999999999999999999999999999999999988776554 459888763
Q ss_pred ---ceEec----c-C--------------------------C-------------CCccccccCCCCCccccEEEeCccc
Q psy6192 77 ---TLELQ----F-P--------------------------L-------------SNLSKTLANTNDPKWNQSFFYPGIR 109 (174)
Q Consensus 77 ---~~~l~----~-p--------------------------~-------------~~kT~~~~~t~~P~wne~~~f~~~~ 109 (174)
.+++. | | + ++||.+++++.||+|||+|.|. ++
T Consensus 281 ~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~-vp 359 (421)
T KOG1028|consen 281 EELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFD-VP 359 (421)
T ss_pred ccccceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEe-CC
Confidence 11221 1 1 0 7889999999999999999998 99
Q ss_pred cCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCc
Q psy6192 110 RSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143 (174)
Q Consensus 110 ~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~ 143 (174)
.+++.+..+.|+|||++.++++++||.+.++...
T Consensus 360 ~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 360 PEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred HHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 9999989999999999999999999999999885
No 2
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.75 E-value=2.2e-18 Score=115.04 Aligned_cols=71 Identities=14% Similarity=0.292 Sum_probs=63.0
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEe
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYL 73 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L 73 (174)
+|++|+++++|+||+|||+|.|. ++.+++...+|.|.|||+|+++++++||++.++++.+.... ...|.+|
T Consensus 47 ~k~kT~v~rktlnPvfnE~f~F~-v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 47 KEAQTALKKLALHTQWEEELVFP-LPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred cEEEcceecCCCCCccccEEEEe-CCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 47789999999999999999998 99999999999999999999999999999999999875443 3447654
No 3
>KOG2059|consensus
Probab=99.75 E-value=3e-18 Score=140.27 Aligned_cols=148 Identities=23% Similarity=0.486 Sum_probs=117.1
Q ss_pred EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEecccc-----
Q psy6192 4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKHT----- 77 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~~----- 77 (174)
.||.++.++++|.|.|.|.|+ ++..- ..|.|.|||.| +++|+.||++.+.-.++...+ ...|+.|++.+
T Consensus 40 ~RT~tv~ksL~PF~gEe~~~~-iP~~F---~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEV 114 (800)
T KOG2059|consen 40 CRTATVEKSLCPFFGEEFYFE-IPRTF---RYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEV 114 (800)
T ss_pred hhhhhhhhhcCCccccceEEe-cCcce---eeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceeccccCCChhh
Confidence 479999999999999999998 87664 56999999999 999999999999887766544 45599998631
Q ss_pred -e----Eec--------------------cCC--------------------CCccccccCCCCCccccEEEeCccccC-
Q psy6192 78 -L----ELQ--------------------FPL--------------------SNLSKTLANTNDPKWNQSFFYPGIRRS- 111 (174)
Q Consensus 78 -~----~l~--------------------~p~--------------------~~kT~~~~~t~~P~wne~~~f~~~~~~- 111 (174)
| ++. +|. .++|+++++|.+|.|+|.|.|. +..+
T Consensus 115 QG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~-~~~~~ 193 (800)
T KOG2059|consen 115 QGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFE-VTREE 193 (800)
T ss_pred ceeEEEEEEeccccCCCcchhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeee-ecccc
Confidence 1 111 111 3589999999999999999998 6543
Q ss_pred ------------CCCcceEEEEEEe-CCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192 112 ------------DLKLRSIEITVWD-YTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK 157 (174)
Q Consensus 112 ------------~~~~~~l~i~v~d-~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~ 157 (174)
+-....|.+.+|+ .+....+.|+|++.+++..+... +-+.||.|++
T Consensus 194 ~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp 253 (800)
T KOG2059|consen 194 SYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQP 253 (800)
T ss_pred ccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEec
Confidence 1123567888998 55666699999999999988744 5679999999
No 4
>KOG0696|consensus
Probab=99.75 E-value=2.9e-19 Score=140.02 Aligned_cols=84 Identities=29% Similarity=0.561 Sum_probs=79.1
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc--CCCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK--HKNSG 162 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~--~~~~~ 162 (174)
++||+++++++||+|||+|.|. +.+++.+ .+|.|+|||+++.++++|+|...++++++...+..+||.|+. +||+.
T Consensus 218 KqKTkTik~~LNP~wNEtftf~-Lkp~Dkd-rRlsiEvWDWDrTsRNDFMGslSFgisEl~K~p~~GWyKlLsqeEGEyy 295 (683)
T KOG0696|consen 218 KQKTKTIKATLNPVWNETFTFK-LKPSDKD-RRLSIEVWDWDRTSRNDFMGSLSFGISELQKAPVDGWYKLLSQEEGEYY 295 (683)
T ss_pred hhhhhhhhhhcCccccceeEEe-ccccccc-ceeEEEEecccccccccccceecccHHHHhhcchhhHHHHhhhhcCcee
Confidence 7899999999999999999999 8888777 999999999999999999999999999999999999999888 99999
Q ss_pred CCCccCCC
Q psy6192 163 SNPTIDNN 170 (174)
Q Consensus 163 ~~~~~~~~ 170 (174)
|||++++.
T Consensus 296 Nvp~~~~~ 303 (683)
T KOG0696|consen 296 NVPVPDED 303 (683)
T ss_pred ccCCCCch
Confidence 99998764
No 5
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.75 E-value=2e-18 Score=115.24 Aligned_cols=70 Identities=14% Similarity=0.334 Sum_probs=64.2
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeec
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYL 155 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L 155 (174)
+++|+++++|+||+|||+|.|. ++.+++.+.+|.|+|||+++++++++||++.++++++... +.++|..|
T Consensus 48 k~kT~v~rktlnPvfnE~f~F~-v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 48 EAQTALKKLALHTQWEEELVFP-LPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEEcceecCCCCCccccEEEEe-CCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 5789999999999999999999 9999999999999999999999999999999999987544 66789765
No 6
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.68 E-value=1.2e-16 Score=108.79 Aligned_cols=71 Identities=30% Similarity=0.607 Sum_probs=64.7
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLT 156 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~ 156 (174)
++||++++++.||+|||+|.|. ++..++....|.++|||++.++++++||++.|++.++... ....||+|+
T Consensus 54 ~~kT~v~~~t~nP~~nE~f~f~-v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 54 KRKTSVKKKTLNPVFNETLRYK-VEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred cccCccCcCCCCCccCceEEEE-CCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 5799999999999999999999 8887888889999999999999999999999999998766 457899985
No 7
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.67 E-value=1.7e-16 Score=108.09 Aligned_cols=71 Identities=31% Similarity=0.622 Sum_probs=63.5
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEec
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLT 74 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~ 74 (174)
++||+++++++||.|||+|.|. ++.+++....|.|.|||++.++++++||++.++|+.+.... ...|++|+
T Consensus 54 ~~kT~v~~~t~nP~~nE~f~f~-v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 54 KRKTSVKKKTLNPVFNETLRYK-VEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred cccCccCcCCCCCccCceEEEE-CCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 5799999999999999999998 98888887899999999999999999999999999987654 34599884
No 8
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.67 E-value=2e-16 Score=107.24 Aligned_cols=70 Identities=27% Similarity=0.516 Sum_probs=63.2
Q ss_pred CCccccccCCCCCccccEEEeCcc-ccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeec
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGI-RRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYL 155 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~-~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L 155 (174)
++||++++++.||+|||+|.|. + +..++....|.|+|||++.++++++||++.|++.++.... ...||+|
T Consensus 50 ~~kT~v~~~~~nP~wnE~F~f~-~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 50 KRKTKVVRKTRNPTFNEMLVYD-GLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred ceeCCccCCCCCCCcccEEEEe-cCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 5799999999999999999998 6 6666777899999999999999999999999999988774 5799987
No 9
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.67 E-value=2.5e-16 Score=107.21 Aligned_cols=72 Identities=36% Similarity=0.597 Sum_probs=63.9
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEec
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLT 74 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~ 74 (174)
.++||+++++++||.|||+|.|. ++.+.+....|.|.|||++.++++++||++.++++.+.... ...|++|+
T Consensus 53 ~~~kT~v~~~t~nP~wnE~f~f~-i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 53 SKRKTSIKRNTTNPVYNETLKYS-ISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred cceEeeeeeCCCCCcccceEEEE-CCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 36799999999999999999998 98887777889999999999999999999999999987655 44599984
No 10
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.67 E-value=1.3e-16 Score=108.34 Aligned_cols=70 Identities=21% Similarity=0.384 Sum_probs=64.3
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC--CcCceeec
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT--DEPEWFYL 155 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~--~~~~W~~L 155 (174)
++||++++++.||+|||+|.|+ ++.+++.+.+|.++|||++..+++++||.+.|+++++... +..+||.|
T Consensus 53 ~~kT~v~~~t~nPvfnE~F~f~-v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 53 LFRTKALEDQDKPVFNEVFRVP-ISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred eEEcCccCCCCCCccccEEEEE-CCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 4789999999999999999999 9999999999999999999999999999999999998655 36789986
No 11
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.66 E-value=1.9e-16 Score=107.86 Aligned_cols=71 Identities=35% Similarity=0.615 Sum_probs=64.8
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLT 156 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~ 156 (174)
++||++++++.||+|||+|.|. ++.+++.+..|.|+|||++..+++++||++.+++.++... ..+.||+|+
T Consensus 54 ~~kT~v~~~t~nP~wnE~f~f~-i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 54 KRKTSIKRNTTNPVYNETLKYS-ISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred ceEeeeeeCCCCCcccceEEEE-CCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 4789999999999999999999 9888887789999999999999999999999999999777 567999985
No 12
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.66 E-value=3.1e-16 Score=106.33 Aligned_cols=71 Identities=28% Similarity=0.504 Sum_probs=62.7
Q ss_pred ceEeceeecCCCCCccCceEEcCCc-CcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEe
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGI-RRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYL 73 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v-~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L 73 (174)
.++||+++++++||.|||+|.|+ + +.+++....|.|.|||++.++++++||++.++|+.+.... ...||+|
T Consensus 49 ~~~kT~v~~~~~nP~wnE~F~f~-~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 49 TKRKTKVVRKTRNPTFNEMLVYD-GLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CceeCCccCCCCCCCcccEEEEe-cCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 36899999999999999999998 6 6677777899999999999999999999999999987655 4559987
No 13
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.66 E-value=3.9e-16 Score=105.20 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=62.0
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcC-cCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCC-ceEEeccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRS-DLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP-EWFYLTKH 76 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~-~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~-~w~~L~~~ 76 (174)
+++|+++.+++||+|||+|.|. +..+ .+....|.|.|||++..+.+++||++.++++.+...+.. .|++|.+.
T Consensus 39 k~kTkv~~~tlnPvwNE~f~F~-v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 39 KFATKSKNNNWSPKYNETFQFI-LGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred EeeeEEecCCCCCccCcEEEEE-eeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 5689999999999999999998 8754 455678999999999888899999999999998866544 49999653
No 14
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.65 E-value=3.6e-16 Score=107.90 Aligned_cols=71 Identities=21% Similarity=0.359 Sum_probs=60.6
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~ 157 (174)
++||+++++++||+|||.|.|. ++.+++.+.+|.|+|||++.++++++||++.|++... ..+.++|..+..
T Consensus 55 kkkT~v~k~t~nPvfNE~f~F~-v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~-g~~~~hW~~ml~ 125 (138)
T cd08407 55 KKQTKRAKHKINPVWNEMIMFE-LPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTS-GTERQHWEEMLD 125 (138)
T ss_pred eeccceeeCCCCCccccEEEEE-CCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcCC-CcHHHHHHHHHh
Confidence 5789999999999999999999 9999999899999999999999999999999999752 113345655433
No 15
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.65 E-value=2.8e-16 Score=106.62 Aligned_cols=71 Identities=21% Similarity=0.389 Sum_probs=63.7
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC--CCceEEe
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD--EPEWFYL 73 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~--~~~w~~L 73 (174)
.++||+++++++||+|||+|.|+ ++.+++...+|.|.|||++.++++++||.+.++|+++.... ...||.|
T Consensus 52 ~~~kT~v~~~t~nPvfnE~F~f~-v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 52 CLFRTKALEDQDKPVFNEVFRVP-ISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred ceEEcCccCCCCCCccccEEEEE-CCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 37899999999999999999998 99999999999999999999999999999999999986553 3348875
No 16
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.64 E-value=4e-16 Score=106.57 Aligned_cols=71 Identities=24% Similarity=0.424 Sum_probs=63.8
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC----CcCceeecc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT----DEPEWFYLT 156 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~----~~~~W~~L~ 156 (174)
++||++++++.||+|||+|.|. ++..++.+..|.++|||.+.++++++||++.|++.++... ...+||+|.
T Consensus 54 k~kT~v~~~t~nPvfNE~F~f~-v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 54 KRKTAVKKGTVNPVFNETLKYV-VEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred eeecccccCCCCCccceEEEEE-cCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 5699999999999999999999 9888888889999999999999999999999999998654 345999983
No 17
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.64 E-value=7.5e-16 Score=107.11 Aligned_cols=72 Identities=22% Similarity=0.398 Sum_probs=63.0
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEE-eCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVW-DYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHKN 160 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~-d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~~ 160 (174)
++||+++++++||+|||+|.|. +. +.+..|.|+|| |++.++++++||++.|+|+++... ....||+|.+..+
T Consensus 68 k~KT~v~kktlnPvfNE~F~f~-v~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 68 KKKTKIARKTLDPLYQQQLVFD-VS---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred ceeceecCCCCCCccCCeEEEE-Ec---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 6799999999999999999999 76 45688999999 688888999999999999998655 5679999997543
No 18
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.64 E-value=6.5e-16 Score=105.53 Aligned_cols=71 Identities=27% Similarity=0.432 Sum_probs=63.3
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC----CCceEEe
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD----EPEWFYL 73 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~----~~~w~~L 73 (174)
.++||+++++++||+|||+|.|. ++.+++....|.+.|||++.++++++||++.++|+++...+ ...||+|
T Consensus 53 ~k~kT~v~~~t~nPvfNE~F~f~-v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 53 SKRKTAVKKGTVNPVFNETLKYV-VEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred ceeecccccCCCCCccceEEEEE-cCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 36799999999999999999998 98888888899999999999999999999999999986653 2459987
No 19
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.63 E-value=1.8e-15 Score=102.91 Aligned_cols=72 Identities=17% Similarity=0.383 Sum_probs=63.8
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~ 157 (174)
++||+++++ .||+|||+|.|+.++..++.+..|.++|||++.++++++||++.|+++++... ....|++|+|
T Consensus 52 ~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 52 RAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred eeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 578999887 99999999999746777788899999999999999999999999999999776 4568999975
No 20
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.63 E-value=1e-15 Score=104.10 Aligned_cols=73 Identities=16% Similarity=0.359 Sum_probs=63.7
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEecc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTK 75 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~ 75 (174)
+++||+++++ +||+|||+|.|+.++.+++...+|.+.|||++.++++++||++.++|+.+.... ...|++|++
T Consensus 51 ~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 51 QRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred ceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 5679999888 999999999997577788888999999999999999999999999999987654 345999874
No 21
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.63 E-value=7.2e-16 Score=103.93 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=62.5
Q ss_pred CccccccCCCCCccccEEEeCccccC-CCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeecccC
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRS-DLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH 158 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~-~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L~~~ 158 (174)
++|+++++++||+|||+|.|. ++.. .+....|.|.|||++..+++++||++.|++.++..++ ...|++|...
T Consensus 40 ~kTkv~~~tlnPvwNE~f~F~-v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 40 FATKSKNNNWSPKYNETFQFI-LGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred eeeEEecCCCCCccCcEEEEE-eeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 579999999999999999999 8754 4566789999999998888999999999999998774 4689999764
No 22
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.62 E-value=2e-15 Score=105.01 Aligned_cols=71 Identities=24% Similarity=0.441 Sum_probs=61.3
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEE-eCCCCCCCceEEEEEEecccccCCC-CCceEEecccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVW-DYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKHT 77 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~-d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~~ 77 (174)
|+||+++++|+||+|||+|.|. +. +....|.|.|| |++.++++++||++.|+|+.+.... ...||+|.+..
T Consensus 68 k~KT~v~kktlnPvfNE~F~f~-v~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 68 KKKTKIARKTLDPLYQQQLVFD-VS---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred ceeceecCCCCCCccCCeEEEE-Ec---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 7899999999999999999998 76 45678999999 6888889999999999999986554 34599997653
No 23
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.62 E-value=1.9e-15 Score=105.53 Aligned_cols=77 Identities=22% Similarity=0.532 Sum_probs=65.6
Q ss_pred CCccccccCCCCCccccEEEeCccc-------------cCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC--Cc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIR-------------RSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT--DE 149 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~-------------~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~--~~ 149 (174)
+++|+++++++||+|||+|.|. +. ..++....|.|.|||.+..++++|||++.|++.++... ..
T Consensus 36 ~~kT~v~~~t~nP~wNE~F~F~-v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~ 114 (148)
T cd04010 36 TKRTKVKKKTNNPQFDEAFYFD-VTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSH 114 (148)
T ss_pred ccCCccEeCCCCCccceEEEEE-EecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcC
Confidence 4789999999999999999998 73 33455578999999999888999999999999998875 45
Q ss_pred CceeecccCCCCC
Q psy6192 150 PEWFYLTKHKNSG 162 (174)
Q Consensus 150 ~~W~~L~~~~~~~ 162 (174)
..||+|.+.....
T Consensus 115 ~~W~~L~~~~~~~ 127 (148)
T cd04010 115 QAWYFLQPREEKS 127 (148)
T ss_pred cceeecCCccccc
Confidence 7999999876554
No 24
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.62 E-value=2.1e-15 Score=104.00 Aligned_cols=71 Identities=20% Similarity=0.299 Sum_probs=61.1
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~ 157 (174)
++||+++++++||+|||+|.|. ++..++.+..|.|+|||++.++++++||++.|+.... ..+.++|..+..
T Consensus 53 k~kT~v~k~t~nP~~nE~f~F~-v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~-g~~~~hW~~ml~ 123 (136)
T cd08406 53 KKKTSVKRDDTNPIFNEAMIFS-VPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAAS-GMGLSHWNQMLA 123 (136)
T ss_pred ccCCccccCCCCCeeceeEEEE-CCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCC-ChhHHHHHHHHH
Confidence 5789999999999999999999 9988898899999999999999999999999988642 224557776554
No 25
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.60 E-value=2.6e-15 Score=102.02 Aligned_cols=72 Identities=19% Similarity=0.452 Sum_probs=64.6
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~ 157 (174)
+++|++++++.||+|||+|.|. ++..++....|.|+|||++.++++++||++.++++++..+ ....||+|+.
T Consensus 52 ~~kT~v~~~t~~P~wne~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~~ 124 (124)
T cd08387 52 TKQSKIHKKTLNPEFDESFVFE-VPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQS 124 (124)
T ss_pred cEeCceEcCCCCCCcccEEEEe-CCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECcC
Confidence 4789999999999999999998 8877777788999999999999999999999999999766 5679999963
No 26
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.59 E-value=4.3e-15 Score=101.53 Aligned_cols=74 Identities=24% Similarity=0.393 Sum_probs=62.1
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC---CceEEecc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE---PEWFYLTK 75 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~---~~w~~L~~ 75 (174)
+++||+++++++||.|||+|.|..++.+++....|.|.|||++.++++++||++.++|+++...+. ..|.+|++
T Consensus 52 ~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 52 HKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred ceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 456999999999999999999943776777667899999999999999999999999999876522 23888864
No 27
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.58 E-value=6e-15 Score=100.24 Aligned_cols=71 Identities=51% Similarity=0.936 Sum_probs=61.4
Q ss_pred CCccccccCCCCCccccEEEeCccc-cCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIR-RSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT 156 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~-~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~ 156 (174)
+++|++++++.||+|||+|.|. +. ..++....|.|+|||.+..+++++||++.+++.+....+.++||+|+
T Consensus 54 ~~kT~v~~~t~nP~wne~f~f~-~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L~ 125 (125)
T cd04031 54 KRRTKTVKKTLNPEWNQTFEYS-NVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDDEPHWYPLQ 125 (125)
T ss_pred cccccccCCCCCCccccEEEEc-ccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccCCcceEECc
Confidence 5789999999999999999998 53 35566688999999999998999999999999985555667999985
No 28
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.58 E-value=4.8e-15 Score=100.68 Aligned_cols=71 Identities=25% Similarity=0.451 Sum_probs=63.3
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLT 156 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~ 156 (174)
+++|++++++.||+|||.|.|. ++..++....|.|+|||++.++++++||++.++++++..+ ..++|+.|.
T Consensus 52 ~~kT~v~~~t~nP~wne~f~f~-i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 52 KFETKVHRKTLNPVFNETFTFK-VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred ceecccCcCCCCCceeeeEEEe-CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 4689999999999999999999 8776666688999999999999999999999999998766 567999985
No 29
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.57 E-value=7.9e-15 Score=99.63 Aligned_cols=72 Identities=18% Similarity=0.433 Sum_probs=63.2
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEec
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLT 74 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~ 74 (174)
+++||++++++.||.|||+|.|. ++.+.+....|.|.|||++.++++++||++.++++++...+ ...|+.|+
T Consensus 51 ~~~kT~v~~~t~~P~wne~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 51 NTKQSKIHKKTLNPEFDESFVFE-VPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CcEeCceEcCCCCCCcccEEEEe-CCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 35789999999999999999998 88877777789999999999999999999999999987544 44599985
No 30
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.57 E-value=8.3e-15 Score=102.29 Aligned_cols=75 Identities=23% Similarity=0.502 Sum_probs=63.1
Q ss_pred ceEeceeecCCCCCccCceEEcCCcC-------------cCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC--C
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIR-------------RSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT--D 66 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~-------------~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~--~ 66 (174)
.++||+++++|+||+|||+|.|. +. .+++....|.|.|||++..+++++||++.+++..+... .
T Consensus 35 ~~~kT~v~~~t~nP~wNE~F~F~-v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~ 113 (148)
T cd04010 35 DTKRTKVKKKTNNPQFDEAFYFD-VTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGS 113 (148)
T ss_pred cccCCccEeCCCCCccceEEEEE-EecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCc
Confidence 46789999999999999999998 63 34555568999999999999999999999999998765 3
Q ss_pred CCceEEecccc
Q psy6192 67 EPEWFYLTKHT 77 (174)
Q Consensus 67 ~~~w~~L~~~~ 77 (174)
...||+|.+..
T Consensus 114 ~~~W~~L~~~~ 124 (148)
T cd04010 114 HQAWYFLQPRE 124 (148)
T ss_pred CcceeecCCcc
Confidence 45699997764
No 31
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.57 E-value=9.8e-15 Score=99.19 Aligned_cols=73 Identities=52% Similarity=0.963 Sum_probs=60.8
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEec
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT 74 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~ 74 (174)
.++||+++++++||.|||+|.|..+..+++....|.|.|||++..+++++||++.++|++........||+|+
T Consensus 53 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L~ 125 (125)
T cd04031 53 SKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDDEPHWYPLQ 125 (125)
T ss_pred ccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccCCcceEECc
Confidence 4678999999999999999999723435555678999999999999999999999999985444556799984
No 32
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.56 E-value=8.8e-15 Score=99.14 Aligned_cols=70 Identities=36% Similarity=0.671 Sum_probs=63.0
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeec
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYL 155 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L 155 (174)
+++|++++++.||+|||+|.|. +...++....|.|+|||.+..+++++||++.+++.++..+ ...+||+|
T Consensus 53 ~~kT~v~~~t~~P~wne~f~f~-i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 53 KRKTSVKKNTTNPVFNETLKYH-ISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred eeeccccCCCCCCcccceEEEe-CCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 4789999999999999999998 8877777789999999999999999999999999999665 46799987
No 33
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.56 E-value=1.1e-14 Score=98.91 Aligned_cols=72 Identities=26% Similarity=0.446 Sum_probs=62.3
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEec
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLT 74 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~ 74 (174)
+++||++++++.||.|||+|.|. ++..++....|.|.|||++.++++++||++.++++++.... ...|++|.
T Consensus 51 ~~~kT~v~~~t~nP~wne~f~f~-i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 51 KKFETKVHRKTLNPVFNETFTFK-VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CceecccCcCCCCCceeeeEEEe-CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 35799999999999999999998 87766666789999999999999999999999999886544 44599885
No 34
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.56 E-value=1.6e-14 Score=98.20 Aligned_cols=74 Identities=31% Similarity=0.529 Sum_probs=61.9
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEecc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTK 75 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~ 75 (174)
+++||+++++++||.|||+|.|..++.+.+....|.+.|||++.++++++||++.++++++..... ..|+.|++
T Consensus 51 ~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 51 HKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred cceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 457999999999999999999973344555567899999999999999999999999999876544 45999864
No 35
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.55 E-value=1.4e-14 Score=98.74 Aligned_cols=73 Identities=22% Similarity=0.383 Sum_probs=60.9
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCc---CcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC---CCCceEEecc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRR---SDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT---DEPEWFYLTK 75 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~---~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~---~~~~w~~L~~ 75 (174)
+++||+++++++||+|||+|.|. +.. ++.....|.|.|||++.++++++||.+.++|+++... ....|++|.+
T Consensus 31 ~~~kT~v~~~t~nP~Wne~f~F~-v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~ 109 (126)
T cd08682 31 EKYSTSVKEKTTSPVWKEECSFE-LPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLES 109 (126)
T ss_pred eeeeeeeecCCCCCEeCceEEEE-ecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence 56899999999999999999997 765 2344578999999999999999999999999987632 2345999964
No 36
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.55 E-value=4.8e-15 Score=101.32 Aligned_cols=71 Identities=18% Similarity=0.374 Sum_probs=59.3
Q ss_pred CCccccccCCC-CCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192 85 SNLSKTLANTN-DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~-~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~ 157 (174)
++||+++++|. +|+|||+|.|+ ++.+.. +.+|.|+|||++..+++++||++.|+.++....+.+||..+..
T Consensus 52 KkKT~v~k~t~~~P~fNEsF~Fd-v~~~~~-~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~ 123 (135)
T cd08692 52 KKKTRLVKSSNGQVKWGETMIFP-VTQQEH-GIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIA 123 (135)
T ss_pred eecCccEECCCCCceecceEEEe-CCchhh-eeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHh
Confidence 68999999995 69999999999 987654 5899999999999999999999999998754445567776543
No 37
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.55 E-value=9e-15 Score=99.67 Aligned_cols=72 Identities=21% Similarity=0.401 Sum_probs=61.7
Q ss_pred CCccccccCCCCCccccEEEeCcccc---CCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCC--C-CcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRR---SDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC--T-DEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~---~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~--~-~~~~W~~L~~ 157 (174)
+++|++++++.||+|||.|.|. ++. .+.....|.++|||.+.++++++||++.|++.++.. + ...+||+|.+
T Consensus 32 ~~kT~v~~~t~nP~Wne~f~F~-v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~ 109 (126)
T cd08682 32 KYSTSVKEKTTSPVWKEECSFE-LPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLES 109 (126)
T ss_pred eeeeeeecCCCCCEeCceEEEE-ecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence 5799999999999999999998 765 234557899999999999899999999999999873 2 4569999986
No 38
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.55 E-value=9.1e-15 Score=97.35 Aligned_cols=72 Identities=24% Similarity=0.505 Sum_probs=64.1
Q ss_pred CCccccccCCCCCcc-ccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC----CcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKW-NQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT----DEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~w-ne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~----~~~~W~~L~~ 157 (174)
++||++++++.||+| ||.|.|. ++..++.+..|.|+|||.+.++++++||++.+++.++... ....||+|.+
T Consensus 33 ~~kT~v~~~~~nP~W~ne~f~f~-i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 33 TYKTDVVKKSLNPVWNSEWFRFE-VDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eEecceecCCCCCcccCcEEEEE-cChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 579999999999999 9999998 8877776689999999999999999999999999998873 3579999965
No 39
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.55 E-value=1.2e-14 Score=98.97 Aligned_cols=71 Identities=23% Similarity=0.499 Sum_probs=62.8
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCC--CCCceeEEEEEeCCcCCCC-CcCceeecc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--GVNDFLGEVIIELSSSLCT-DEPEWFYLT 156 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~--~~~~~iG~~~l~l~~~~~~-~~~~W~~L~ 156 (174)
+++|++++++.||+|||+|.|. +...++....|.|.|||.+.+ +++++||++.+++.++... ...+||+|.
T Consensus 54 ~~kT~v~~~~~nP~wne~f~f~-i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 54 RRKTSVKKDNLNPVFDETFEFP-VSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred eEecccccCCCCCEECeEEEEe-cCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 5799999999999999999999 887777778999999998875 6899999999999998766 457999984
No 40
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.54 E-value=3.9e-15 Score=102.98 Aligned_cols=72 Identities=15% Similarity=0.326 Sum_probs=62.8
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~ 157 (174)
++||++++++.||+|||+|.|. ++..++.+.+|.|+|||.+.++++++||++.|++......+.++|+.+..
T Consensus 54 ~~kT~v~~~t~nPvfnEtF~f~-i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~ 125 (138)
T cd08408 54 KSKTSIRRGQPDPEFKETFVFQ-VALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKE 125 (138)
T ss_pred eccceeecCCCCCcEeeeEEEE-CCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHh
Confidence 4799999999999999999999 99888888999999999999999999999999998654444567777654
No 41
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.54 E-value=1.9e-14 Score=97.78 Aligned_cols=73 Identities=29% Similarity=0.522 Sum_probs=62.1
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~ 157 (174)
+++|++++++.||+|||.|.|..++...+....|.++|||++..+++++||++.+++.++... ....|+.|++
T Consensus 52 ~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 52 KLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred ceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 479999999999999999999722344455578999999999999999999999999998866 5579999975
No 42
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.54 E-value=9.1e-15 Score=98.68 Aligned_cols=69 Identities=19% Similarity=0.510 Sum_probs=59.3
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCC-CCceeEEEEEeCCcCCCC-CcCceeec
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG-VNDFLGEVIIELSSSLCT-DEPEWFYL 155 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~-~~~~iG~~~l~l~~~~~~-~~~~W~~L 155 (174)
++||++++++.||+|||+|.|. ++..++. ..|.|+|||.+... ++++||.+.|++.++..+ ...+||.|
T Consensus 49 ~~kT~v~~~t~~P~~nE~F~f~-v~~~~~~-~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 49 RQKTSTVPDSANPLFHETFSFD-VNERDYQ-KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred eEeCccccCCCCCccccEEEEE-cChHHhC-CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 4689999999999999999998 8776665 57899999998775 478999999999999755 46799987
No 43
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.54 E-value=1.8e-14 Score=98.50 Aligned_cols=73 Identities=22% Similarity=0.367 Sum_probs=62.8
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC---CcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT---DEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~---~~~~W~~L~~ 157 (174)
++||++++++.||+|||+|.|..++..++.+..|.++|||++.++++++||++.+++.++... +...|.+|++
T Consensus 53 ~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 53 KVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred eeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 368999999999999999999326666776678999999999999999999999999998765 3458999985
No 44
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.53 E-value=2.6e-14 Score=96.79 Aligned_cols=71 Identities=37% Similarity=0.652 Sum_probs=61.9
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEe
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYL 73 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L 73 (174)
.++||++++++.||.|||+|.|. +..+++....|.|.|||++.++++++||++.++|+++.... ...||+|
T Consensus 52 ~~~kT~v~~~t~~P~wne~f~f~-i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 52 SKRKTSVKKNTTNPVFNETLKYH-ISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred ceeeccccCCCCCCcccceEEEe-CCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 35789999999999999999998 88777767789999999999999999999999999986544 3459986
No 45
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.53 E-value=2.6e-14 Score=97.39 Aligned_cols=72 Identities=22% Similarity=0.502 Sum_probs=62.1
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCC--CCCceEEEEEEecccccCCCC-CceEEec
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--GVNDFLGEVIIELSSSLCTDE-PEWFYLT 74 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~--~~~~~lG~~~~~l~~~~~~~~-~~w~~L~ 74 (174)
.++||++++++.||.|||+|.|. +..+.+....|.|.|||.+.+ +++++||++.++++++..... ..|++|+
T Consensus 53 ~~~kT~v~~~~~nP~wne~f~f~-i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 53 TRRKTSVKKDNLNPVFDETFEFP-VSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ceEecccccCCCCCEECeEEEEe-cCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 46799999999999999999998 887777778899999999976 689999999999999865543 4599884
No 46
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.53 E-value=3.5e-14 Score=95.30 Aligned_cols=76 Identities=24% Similarity=0.300 Sum_probs=63.4
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEecccceEe
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTKHTLEL 80 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~~~~~l 80 (174)
++++|+++++|+||.|||+|.|. +... ....|.|.|||++..+++++||.+.++++++..... ..|++|.+..+.+
T Consensus 32 ~~~kT~v~~~t~nP~Wne~f~f~-~~~~--~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~G~~ 108 (116)
T cd08376 32 EKYKSKVCSKTLNPQWLEQFDLH-LFDD--QSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDGEGSL 108 (116)
T ss_pred EeEecccccCCCCCceeEEEEEE-ecCC--CCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCCCcEE
Confidence 46899999999999999999997 6543 246899999999999999999999999998776544 3499998775554
No 47
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.52 E-value=4e-14 Score=95.93 Aligned_cols=72 Identities=19% Similarity=0.422 Sum_probs=63.0
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCC-ceEEecc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP-EWFYLTK 75 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~-~w~~L~~ 75 (174)
.++|++++++.||.|||+|.|. ++...+....|.|.|||++..+++++||++.++|+++...... .|++|.+
T Consensus 51 ~~~T~v~~~~~~P~wne~f~f~-i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 51 SLQSKVKRKTQNPNFDETFVFQ-VSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred ceEeeeEcCCCCCccceEEEEE-cCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 4689999999999999999998 8877766678999999999999999999999999998766544 5999864
No 48
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.51 E-value=4.8e-14 Score=96.67 Aligned_cols=79 Identities=28% Similarity=0.561 Sum_probs=68.0
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc--CCCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK--HKNSG 162 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~--~~~~~ 162 (174)
+++|++++++.+|.|||+|.|. +...+. ...|.|+|||.+..+++++||++.+++.++.....+.||+|.+ +|++.
T Consensus 51 ~~rT~v~~~~~~P~wne~f~~~-~~~~~~-~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~~~ 128 (131)
T cd04026 51 KQKTKTIKKTLNPVWNETFTFD-LKPADK-DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGEYY 128 (131)
T ss_pred eecceeecCCCCCCccceEEEe-CCchhc-CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcCccCceEECcCccccccc
Confidence 4799999999999999999998 765543 3789999999998889999999999999988667779999988 67777
Q ss_pred CCC
Q psy6192 163 SNP 165 (174)
Q Consensus 163 ~~~ 165 (174)
|+|
T Consensus 129 ~~~ 131 (131)
T cd04026 129 NVP 131 (131)
T ss_pred cCC
Confidence 764
No 49
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.51 E-value=3.2e-14 Score=96.38 Aligned_cols=71 Identities=21% Similarity=0.433 Sum_probs=63.3
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK 157 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~ 157 (174)
++|++++++.||+|||.|.|. ++..++....|.|.|||.+..+++++||++.++++++... ....|++|.+
T Consensus 52 ~~T~v~~~~~~P~wne~f~f~-i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 52 LQSKVKRKTQNPNFDETFVFQ-VSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred eEeeeEcCCCCCccceEEEEE-cCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 689999999999999999998 8877776678999999999988899999999999998877 4569999964
No 50
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.51 E-value=4.8e-14 Score=93.87 Aligned_cols=73 Identities=23% Similarity=0.467 Sum_probs=62.6
Q ss_pred ceEeceeecCCCCCcc-CceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC----CCCceEEecc
Q psy6192 2 FKEFAKTLANTNDPKW-NQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT----DEPEWFYLTK 75 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w-~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~----~~~~w~~L~~ 75 (174)
+++||+++++++||.| ||+|.|. +....+....|.|.|||++.++++++||++.++++.+... ....||+|.+
T Consensus 32 ~~~kT~v~~~~~nP~W~ne~f~f~-i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 32 TTYKTDVVKKSLNPVWNSEWFRFE-VDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eeEecceecCCCCCcccCcEEEEE-cChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 4689999999999999 9999998 8777665678999999999999999999999999998763 2345999853
No 51
>KOG1013|consensus
Probab=99.50 E-value=1.5e-14 Score=109.84 Aligned_cols=140 Identities=24% Similarity=0.403 Sum_probs=110.6
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCc---eEE--ec---
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPE---WFY--LT--- 74 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~---w~~--L~--- 74 (174)
+.||++..+++||.|+|+.++..+..+++....+++.++|.+.+..++++|+..+.+..+....... |+. +.
T Consensus 131 slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~r 210 (362)
T KOG1013|consen 131 SLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSER 210 (362)
T ss_pred hhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCccc
Confidence 3678899999999999999888788888888999999999999999999999998776544322111 211 11
Q ss_pred -------ccc---eEecc-----------------------------------C-----CCCccccccCCCCCccccEEE
Q psy6192 75 -------KHT---LELQF-----------------------------------P-----LSNLSKTLANTNDPKWNQSFF 104 (174)
Q Consensus 75 -------~~~---~~l~~-----------------------------------p-----~~~kT~~~~~t~~P~wne~~~ 104 (174)
..+ .++.| | .++||.+.|++.+|.||+.|.
T Consensus 211 ad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~ 290 (362)
T KOG1013|consen 211 ADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFF 290 (362)
T ss_pred ccccchhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCcccccccc
Confidence 000 01111 1 178999999999999999999
Q ss_pred eCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCc
Q psy6192 105 YPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143 (174)
Q Consensus 105 f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~ 143 (174)
|. +.+.++....+.|+|||++.....+++|.+.+++..
T Consensus 291 ~~-i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 291 YD-IGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred cc-CCccchhcceEEEeecccCCCcCccCCCcccccccc
Confidence 99 999999999999999999998899999998887764
No 52
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.50 E-value=5.1e-14 Score=96.06 Aligned_cols=75 Identities=24% Similarity=0.360 Sum_probs=62.6
Q ss_pred CCccccccCCCCCccccEEEeCcccc-CCCCcceEEEEEEeCCCCC-CCceeEEEEEeCCcCCCC--CcCceeecccCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRR-SDLKLRSIEITVWDYTRYG-VNDFLGEVIIELSSSLCT--DEPEWFYLTKHKN 160 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~-~~~~~~~l~i~v~d~~~~~-~~~~iG~~~l~l~~~~~~--~~~~W~~L~~~~~ 160 (174)
+++|++++++.||+|||.|.|. +.. ..+....|.|+|||.+.+. ++++||++.+++.++... ...+||+|...+.
T Consensus 33 ~~rT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~ 111 (127)
T cd04022 33 KKRTRTKPKDLNPVWNEKLVFN-VSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGL 111 (127)
T ss_pred EecceeEcCCCCCccceEEEEE-ccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCC
Confidence 4789999999999999999998 753 3344578999999998886 899999999999998743 3569999998654
No 53
>KOG0696|consensus
Probab=99.50 E-value=4e-15 Score=117.04 Aligned_cols=73 Identities=32% Similarity=0.621 Sum_probs=65.7
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 76 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~ 76 (174)
-|++|++++.++||+|||+|.|. +..++.. ++|.|+|||+|+.++++|+|+.++.++++...+...||.|...
T Consensus 217 sKqKTkTik~~LNP~wNEtftf~-Lkp~Dkd-rRlsiEvWDWDrTsRNDFMGslSFgisEl~K~p~~GWyKlLsq 289 (683)
T KOG0696|consen 217 SKQKTKTIKATLNPVWNETFTFK-LKPSDKD-RRLSIEVWDWDRTSRNDFMGSLSFGISELQKAPVDGWYKLLSQ 289 (683)
T ss_pred hhhhhhhhhhhcCccccceeEEe-ccccccc-ceeEEEEecccccccccccceecccHHHHhhcchhhHHHHhhh
Confidence 36899999999999999999998 8887765 7899999999999999999999999999988888889987644
No 54
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.50 E-value=5.5e-14 Score=95.14 Aligned_cols=69 Identities=20% Similarity=0.393 Sum_probs=60.9
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH 158 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~ 158 (174)
++|+++++|.||+|||.|.|. ++.. ...|.|.|||.+.++++++||.+.++++++... ..+.||+|++.
T Consensus 36 ~kT~v~~kt~~P~WnE~F~f~-v~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 105 (121)
T cd08401 36 FRTKTVEKSLCPFFGEDFYFE-IPRT---FRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPV 105 (121)
T ss_pred EEeeEEECCCCCccCCeEEEE-cCCC---CCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEcc
Confidence 689999999999999999998 7743 268999999999999999999999999998765 45789999984
No 55
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.50 E-value=6.5e-14 Score=93.34 Aligned_cols=74 Identities=23% Similarity=0.492 Sum_probs=60.7
Q ss_pred CceEeceeecCCCCCccCceEEcCCcCc--CcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC----CceEEec
Q psy6192 1 GFKEFAKTLANTNDPKWNQSFFYPGIRR--SDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE----PEWFYLT 74 (174)
Q Consensus 1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~--~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~----~~w~~L~ 74 (174)
+++++|++++++.||.|||+|.|. +.. .++....|.|.|||++.++++++||++.++|+.+..... ..|++|.
T Consensus 31 ~~~~kT~~~~~t~nP~wne~f~f~-~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~ 109 (111)
T cd04011 31 GQKKYTSVKKGTNCPFYNEYFFFN-FHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT 109 (111)
T ss_pred CEeeeeeEEeccCCCccccEEEEe-cCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence 467899999999999999999997 433 334457899999999999999999999999998865432 2499986
Q ss_pred c
Q psy6192 75 K 75 (174)
Q Consensus 75 ~ 75 (174)
+
T Consensus 110 ~ 110 (111)
T cd04011 110 D 110 (111)
T ss_pred C
Confidence 5
No 56
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.50 E-value=1.8e-14 Score=99.38 Aligned_cols=73 Identities=25% Similarity=0.415 Sum_probs=62.1
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~ 158 (174)
+++|++++++.||+|||+|.|. ++..++.+..|.|+|||++..+++++||++.|+.........++|+.|.+.
T Consensus 52 ~~kT~v~~~t~nP~wnE~F~f~-i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~ 124 (135)
T cd08410 52 TKKTSCMRGTIDPFYNESFSFK-VPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNS 124 (135)
T ss_pred eEcCccccCCCCCccceeEEEe-CCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhC
Confidence 4789999999999999999999 887778777899999999999999999999988755444345788887664
No 57
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.49 E-value=5.5e-14 Score=94.86 Aligned_cols=69 Identities=19% Similarity=0.508 Sum_probs=58.1
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCC-CCceEEEEEEecccccCCC-CCceEEe
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG-VNDFLGEVIIELSSSLCTD-EPEWFYL 73 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~-~~~~lG~~~~~l~~~~~~~-~~~w~~L 73 (174)
++||+++++++||.|||+|.|. ++.+++. ..|.|.|||++..+ ++++||.+.|++.++.... ...||.|
T Consensus 49 ~~kT~v~~~t~~P~~nE~F~f~-v~~~~~~-~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 49 RQKTSTVPDSANPLFHETFSFD-VNERDYQ-KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred eEeCccccCCCCCccccEEEEE-cChHHhC-CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 5689999999999999999998 8777664 56889999999876 4789999999999987544 3459876
No 58
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.49 E-value=7.4e-14 Score=99.08 Aligned_cols=75 Identities=31% Similarity=0.610 Sum_probs=62.3
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH 76 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~ 76 (174)
.++||+++++++||.|||+|.|..++.+++....|.|.|||++.++++++||++.+.++.+.... ..+|+.+...
T Consensus 64 ~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~ 139 (162)
T cd04020 64 SKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE 139 (162)
T ss_pred cceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence 46799999999999999999997344556666789999999999999999999999999876543 4558888654
No 59
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.49 E-value=1.3e-13 Score=93.27 Aligned_cols=71 Identities=32% Similarity=0.681 Sum_probs=59.8
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC------cCceeecccC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD------EPEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~------~~~W~~L~~~ 158 (174)
+++|++++++.||+|||.|.|. +. .+....|.++|||.+.. ++++||++.++++++.... ..+||+|.+.
T Consensus 29 ~~kT~v~~~t~nP~Wne~F~f~-~~--~~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~ 104 (121)
T cd08378 29 KGSTKAIERTSNPEWNQVFAFS-KD--RLQGSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDK 104 (121)
T ss_pred cccccccCCCCCCccceEEEEE-cC--CCcCCEEEEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCC
Confidence 5799999999999999999998 54 33457899999999877 8899999999999987542 3589999885
Q ss_pred C
Q psy6192 159 K 159 (174)
Q Consensus 159 ~ 159 (174)
.
T Consensus 105 ~ 105 (121)
T cd08378 105 K 105 (121)
T ss_pred C
Confidence 4
No 60
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.48 E-value=9.3e-14 Score=94.44 Aligned_cols=71 Identities=18% Similarity=0.364 Sum_probs=60.1
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCC------CCceeEEEEEeCCcCCCCC-cCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG------VNDFLGEVIIELSSSLCTD-EPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~------~~~~iG~~~l~l~~~~~~~-~~~W~~L~~ 157 (174)
+.+|++++++.||+|||+|.|. +.... ..|.|+|||.+..+ ++++||++.+++.++..+. ...||+|.+
T Consensus 36 ~~rTk~~~~~~nP~WnE~f~f~-v~~~~---~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 36 WVRTRTVEDSSNPRWNEQYTWP-VYDPC---TVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred EeEcCcccCCCCCcceeEEEEE-ecCCC---CEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 4689999999999999999998 65322 47999999998763 8999999999999987764 479999987
Q ss_pred CC
Q psy6192 158 HK 159 (174)
Q Consensus 158 ~~ 159 (174)
..
T Consensus 112 ~~ 113 (126)
T cd08379 112 LN 113 (126)
T ss_pred CC
Confidence 44
No 61
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.48 E-value=4.6e-14 Score=97.40 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=55.1
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~ 61 (174)
+|+||+++++++||+|||+|.|. ++.+.+....|.|+|||++.++++++||.+.+.+..
T Consensus 54 ~kkkT~v~k~t~nPvfNE~f~F~-v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 54 KKKQTKRAKHKINPVWNEMIMFE-LPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred ceeccceeeCCCCCccccEEEEE-CCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 36799999999999999999998 999999889999999999999999999999998864
No 62
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.48 E-value=2.6e-14 Score=98.62 Aligned_cols=72 Identities=21% Similarity=0.344 Sum_probs=63.0
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~ 158 (174)
++||++++++.||+|||+|.|. ++..++....|.|+|||++.++++++||++.+++.. ...+.++|+.|...
T Consensus 53 ~~kT~v~k~t~nP~w~e~F~f~-v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~~~~~~~w~~l~~~ 124 (136)
T cd08404 53 KKKTHVKKCTLNPVFNESFVFD-IPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA-SGSGGHHWKEVCNP 124 (136)
T ss_pred eEcCccccCCCCCccCceEEEE-CCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC-CCchHHHHHHHHhC
Confidence 4789999999999999999999 887777768899999999999999999999999998 44466789988664
No 63
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.48 E-value=7.1e-14 Score=99.20 Aligned_cols=73 Identities=30% Similarity=0.632 Sum_probs=60.6
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~ 157 (174)
++||++++++.||+|||.|.|..+...++.+..|.|+|||++.++++++||++.+++.++... ..+.|+.|.+
T Consensus 65 ~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 65 KQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred ceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 579999999999999999999722345666678999999999998999999999999998655 3456776654
No 64
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.48 E-value=1.1e-13 Score=94.12 Aligned_cols=72 Identities=18% Similarity=0.336 Sum_probs=59.2
Q ss_pred CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCC------CCceEEEEEEecccccCCCC-CceEEe
Q psy6192 1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG------VNDFLGEVIIELSSSLCTDE-PEWFYL 73 (174)
Q Consensus 1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~------~~~~lG~~~~~l~~~~~~~~-~~w~~L 73 (174)
+++.||+++++++||+|||+|.|. +... ...|.|.|||++..+ .+++||++.++++.+..... ..|++|
T Consensus 34 ~~~~rTk~~~~~~nP~WnE~f~f~-v~~~---~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L 109 (126)
T cd08379 34 PKWVRTRTVEDSSNPRWNEQYTWP-VYDP---CTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPL 109 (126)
T ss_pred CEEeEcCcccCCCCCcceeEEEEE-ecCC---CCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEe
Confidence 356799999999999999999997 6432 247999999999874 89999999999998876544 459999
Q ss_pred ccc
Q psy6192 74 TKH 76 (174)
Q Consensus 74 ~~~ 76 (174)
...
T Consensus 110 ~~~ 112 (126)
T cd08379 110 LSL 112 (126)
T ss_pred EeC
Confidence 743
No 65
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.48 E-value=9.3e-14 Score=92.16 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=53.8
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 65 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~ 65 (174)
+++||+++++++||+|||+|.|. +..... ...|.|.|||++..+++++||.+.++|+.+...
T Consensus 37 ~~~kT~v~~~t~nPvWne~f~f~-v~~~~~-~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 37 RVFRTSWRRHTLNPVFNERLAFE-VYPHEK-NFDIQFKVLDKDKFSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred EeEeeeeecCCCCCcccceEEEE-EeCccC-CCEEEEEEEECCCCCCCcceEEEEEEHHHHHhh
Confidence 46799999999999999999997 765443 368999999999999999999999999987643
No 66
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.48 E-value=1.4e-13 Score=93.02 Aligned_cols=69 Identities=19% Similarity=0.405 Sum_probs=57.9
Q ss_pred CCccccccC-CCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCC-cCCCC-CcCceeeccc
Q psy6192 85 SNLSKTLAN-TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS-SSLCT-DEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~-t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~-~~~~~-~~~~W~~L~~ 157 (174)
+.+|+++++ +.||+|||.|.|. ++.. ...|.|+|||.+.+++|++||.+.|++. .+..+ ....|++|.+
T Consensus 34 ~~kT~v~~~~~~nP~WNe~F~f~-v~~~---~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~ 105 (121)
T cd04016 34 VYETPTAYNGAKNPRWNKTIQCT-LPEG---VDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSG 105 (121)
T ss_pred EEEeEEccCCCCCCccCeEEEEE-ecCC---CcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcC
Confidence 368999865 7999999999998 7643 2579999999999999999999999996 45554 4679999987
No 67
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.47 E-value=2.4e-13 Score=92.00 Aligned_cols=72 Identities=32% Similarity=0.682 Sum_probs=58.7
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC------CCceEEecc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD------EPEWFYLTK 75 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~------~~~w~~L~~ 75 (174)
+++||++++++.||.|||+|.|. +. .+....|.|.|||++.. .+++||.+.++++.+.... ...|++|.+
T Consensus 28 ~~~kT~v~~~t~nP~Wne~F~f~-~~--~~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~ 103 (121)
T cd08378 28 YKGSTKAIERTSNPEWNQVFAFS-KD--RLQGSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLED 103 (121)
T ss_pred ccccccccCCCCCCccceEEEEE-cC--CCcCCEEEEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccC
Confidence 46799999999999999999997 54 33357899999999987 7899999999999876432 235999976
Q ss_pred cc
Q psy6192 76 HT 77 (174)
Q Consensus 76 ~~ 77 (174)
..
T Consensus 104 ~~ 105 (121)
T cd08378 104 KK 105 (121)
T ss_pred CC
Confidence 54
No 68
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.47 E-value=3.2e-14 Score=98.36 Aligned_cols=72 Identities=15% Similarity=0.298 Sum_probs=61.3
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~ 157 (174)
+++|++++++.||+|||.|.|. ++..++....|.|+|||.+..+++++||++.|+......+ +.++|..|..
T Consensus 52 ~~kT~v~~~~~nP~fnE~F~f~-i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 52 TKKTEVVDGAASPSFNESFSFK-VTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred eeecccEeCCCCCcccceEEEE-CCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 5789999999999999999999 9888888889999999999999999999999997644333 4567777654
No 69
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.47 E-value=2.4e-13 Score=91.85 Aligned_cols=71 Identities=17% Similarity=0.357 Sum_probs=57.7
Q ss_pred ceEeceeecC-CCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccc-ccCC-CCCceEEeccc
Q psy6192 2 FKEFAKTLAN-TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT-DEPEWFYLTKH 76 (174)
Q Consensus 2 ~k~rT~~~~~-t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~-~~~~-~~~~w~~L~~~ 76 (174)
++.||+++.+ +.||.|||+|.|. +... ...|.|.|||++.+++|++||.+.+++.. +... ....|++|.+.
T Consensus 33 ~~~kT~v~~~~~~nP~WNe~F~f~-v~~~---~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~ 106 (121)
T cd04016 33 AVYETPTAYNGAKNPRWNKTIQCT-LPEG---VDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGK 106 (121)
T ss_pred EEEEeEEccCCCCCCccCeEEEEE-ecCC---CcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCc
Confidence 4678999865 7999999999998 7643 24699999999999999999999999963 4433 35669999763
No 70
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.47 E-value=2.5e-13 Score=91.96 Aligned_cols=70 Identities=20% Similarity=0.353 Sum_probs=59.6
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH 76 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~ 76 (174)
..||+++++|+||.|||+|.|. ++.. ...|.|.|||++.++++++||.+.++++++.... ...|++|++.
T Consensus 35 ~~kT~v~~kt~~P~WnE~F~f~-v~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 105 (121)
T cd08401 35 VFRTKTVEKSLCPFFGEDFYFE-IPRT---FRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPV 105 (121)
T ss_pred EEEeeEEECCCCCccCCeEEEE-cCCC---CCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEcc
Confidence 4689999999999999999998 7643 2579999999999999999999999999876443 4459999863
No 71
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.47 E-value=1.6e-13 Score=93.58 Aligned_cols=74 Identities=26% Similarity=0.379 Sum_probs=60.4
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCc-CcCCcceEEEEEEeCCCCC-CCceEEEEEEecccccCC--CCCceEEeccc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRR-SDLKLRSIEITVWDYTRYG-VNDFLGEVIIELSSSLCT--DEPEWFYLTKH 76 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~-~~~~~~~L~i~v~d~~~~~-~~~~lG~~~~~l~~~~~~--~~~~w~~L~~~ 76 (174)
+++||++++++.||.|||+|.|. +.. ..+....|.|.|||++.++ .+++||++.++++.+... ....|++|+..
T Consensus 32 ~~~rT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~ 109 (127)
T cd04022 32 QKKRTRTKPKDLNPVWNEKLVFN-VSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR 109 (127)
T ss_pred EEecceeEcCCCCCccceEEEEE-ccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC
Confidence 56899999999999999999998 653 3333468999999999887 899999999999987732 23459999754
No 72
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.46 E-value=5.8e-14 Score=96.48 Aligned_cols=72 Identities=29% Similarity=0.576 Sum_probs=61.8
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~ 158 (174)
+++|++++++.||+|||+|.|. +...++....|.|+|||++..+++++||++.+++.+. ....++|+.++..
T Consensus 51 ~~kT~v~~~t~nP~wne~f~f~-~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~-~~~~~~W~~~l~~ 122 (133)
T cd08384 51 KHKTQVKKKTLNPEFNEEFFYD-IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAK-GERLRHWLDCLKN 122 (133)
T ss_pred CceeeeEeccCCCCcccEEEEE-CCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCCC-CchHHHHHHHHhC
Confidence 4799999999999999999998 8877777788999999999988999999999999852 2345689987663
No 73
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.46 E-value=2.6e-13 Score=93.74 Aligned_cols=75 Identities=24% Similarity=0.594 Sum_probs=64.2
Q ss_pred CCccccccCCCCCccccEEEeCccccC-------------CCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRS-------------DLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEP 150 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~-------------~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~ 150 (174)
+++|++++++.||.|||.|.|. +... ++....|.|+|||.+..++++|||++.+++.++... ...
T Consensus 35 ~~rT~vv~~t~nP~Wne~f~f~-~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~ 113 (137)
T cd08675 35 TKRTKVKKKTNNPRFDEAFYFE-LTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQ 113 (137)
T ss_pred eeccceeeCCCCCCcceEEEEE-ccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCccc
Confidence 4799999999999999999998 6543 335578999999999888999999999999998765 467
Q ss_pred ceeecccCCC
Q psy6192 151 EWFYLTKHKN 160 (174)
Q Consensus 151 ~W~~L~~~~~ 160 (174)
.||+|.+.+.
T Consensus 114 ~W~~L~~~~~ 123 (137)
T cd08675 114 AWYFLQPREA 123 (137)
T ss_pred ceEecCCcCC
Confidence 9999999653
No 74
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.46 E-value=2.3e-13 Score=92.28 Aligned_cols=71 Identities=24% Similarity=0.544 Sum_probs=61.4
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCC
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHK 159 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~ 159 (174)
++|++++++.||+|||.|.|. +.... ...|.|+|||++..+++++||++.+++.++... ..+.||.|.+.+
T Consensus 34 ~kT~v~~~t~nP~Wne~f~f~-~~~~~--~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~ 105 (123)
T cd04025 34 LETSVVKKSCYPRWNEVFEFE-LMEGA--DSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDP 105 (123)
T ss_pred EeceeecCCCCCccCcEEEEE-cCCCC--CCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCC
Confidence 689999999999999999998 65433 478999999999998999999999999998765 457999999844
No 75
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.46 E-value=3.4e-13 Score=91.42 Aligned_cols=72 Identities=24% Similarity=0.517 Sum_probs=60.4
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH 76 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~ 76 (174)
++.+|+++++++||.|||+|.|. +.... ...|.|.|||++..+.+++||.+.++++++.... ...|+.|.+.
T Consensus 32 ~~~kT~v~~~t~nP~Wne~f~f~-~~~~~--~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~ 104 (123)
T cd04025 32 QTLETSVVKKSCYPRWNEVFEFE-LMEGA--DSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPD 104 (123)
T ss_pred EEEeceeecCCCCCccCcEEEEE-cCCCC--CCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCC
Confidence 45789999999999999999997 65543 4679999999999999999999999999876543 4559998753
No 76
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.45 E-value=2.7e-13 Score=95.04 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=61.0
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcC------cCCcceEEEEEEeCCCC-CCCceEEEEEEecccccCCC-CCceEEe
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRS------DLKLRSIEITVWDYTRY-GVNDFLGEVIIELSSSLCTD-EPEWFYL 73 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~------~~~~~~L~i~v~d~~~~-~~~~~lG~~~~~l~~~~~~~-~~~w~~L 73 (174)
++.||+++++|+||+|||+|.|. +... .+....|.+.|||++.+ ++|++||.+.++|+.+.... ...|++|
T Consensus 41 ~k~KT~v~k~TlnPvfNE~f~f~-I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L 119 (155)
T cd08690 41 QSGKTSTIKDTNSPEYNESFKLN-INRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDL 119 (155)
T ss_pred ceeecCcccCCCCCcccceEEEE-eccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEh
Confidence 57899999999999999999998 8655 34567799999999986 57999999999999987654 3458887
Q ss_pred cc
Q psy6192 74 TK 75 (174)
Q Consensus 74 ~~ 75 (174)
..
T Consensus 120 ~~ 121 (155)
T cd08690 120 MD 121 (155)
T ss_pred hh
Confidence 53
No 77
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.45 E-value=1.4e-13 Score=90.88 Aligned_cols=70 Identities=27% Similarity=0.390 Sum_probs=58.9
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC---cCceeecccCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD---EPEWFYLTKHKN 160 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~---~~~W~~L~~~~~ 160 (174)
+++|++++++.||+|||.|.|. +...+ ...|.|+|||.+. +++||++.+++.++.... ..+||+|.+.|+
T Consensus 33 ~~kT~v~~~t~nP~Wne~f~f~-v~~~~--~~~l~v~v~d~~~---~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g~ 105 (105)
T cd04050 33 TQKSKVKERTNNPVWEEGFTFL-VRNPE--NQELEIEVKDDKT---GKSLGSLTLPLSELLKEPDLTLDQPFPLDNSGP 105 (105)
T ss_pred EEeCccccCCCCCcccceEEEE-eCCCC--CCEEEEEEEECCC---CCccEEEEEEHHHhhccccceeeeeEecCCCCC
Confidence 4789999999999999999999 76533 3579999999876 789999999999987653 469999988763
No 78
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.45 E-value=3.5e-13 Score=91.80 Aligned_cols=71 Identities=21% Similarity=0.368 Sum_probs=60.0
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH 76 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~ 76 (174)
+++||+++++|+||.|||+|.|. +... ...|.|.|||++..+++++||.+.++++.+.... ...|++|.+.
T Consensus 31 ~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 102 (126)
T cd08678 31 QKYQSSTQKNTSNPFWDEHFLFE-LSPN---SKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGR 102 (126)
T ss_pred cEEEeEEEecCCCCccCceEEEE-eCCC---CCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCC
Confidence 46799999999999999999998 7543 3579999999999999999999999999877554 4459998754
No 79
>KOG1328|consensus
Probab=99.45 E-value=3.9e-14 Score=116.91 Aligned_cols=61 Identities=23% Similarity=0.363 Sum_probs=54.5
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCC--cceEEEEEEeCCCCCCCceeEEEEEeCCcCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLK--LRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 146 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~--~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~ 146 (174)
.++|+|+++|+||+|+|.|.|. ++++... ...+.++|+|+|.++.++|-|++.+.|+.+..
T Consensus 987 ~q~T~V~~rtLnPVfDE~FeFs-Vp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 987 VQKTKVVSRTLNPVFDETFEFS-VPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred hhhhhhhhccccchhhhheeee-cCccccccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 5899999999999999999999 8765533 47899999999999999999999999998754
No 80
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.45 E-value=1.6e-13 Score=96.05 Aligned_cols=71 Identities=25% Similarity=0.482 Sum_probs=60.3
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCc--------Cceeecc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE--------PEWFYLT 156 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~--------~~W~~L~ 156 (174)
+.||++++++.||+|||.|.|. +..+... ..|.|+|||.+..+++++||++.|++.++...+. ++|+.|.
T Consensus 47 ~~kT~v~~~t~nPvWNE~f~f~-v~~p~~~-~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 47 KVKTSVKKNSYNPEWNEQIVFP-EMFPPLC-ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred eeecceEcCCCCCCcceEEEEE-eeCCCcC-CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 3689999999999999999998 6544444 6899999999999999999999999998876654 4777776
Q ss_pred c
Q psy6192 157 K 157 (174)
Q Consensus 157 ~ 157 (174)
+
T Consensus 125 g 125 (151)
T cd04018 125 G 125 (151)
T ss_pred c
Confidence 5
No 81
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.45 E-value=4.1e-14 Score=97.88 Aligned_cols=70 Identities=17% Similarity=0.330 Sum_probs=59.3
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEe
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL 73 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L 73 (174)
++||++++++.||+|||+|.|. ++.+++....|.|.|||++.++++++||++.+.+..........|+.+
T Consensus 54 ~~kT~v~~~t~nPvfnEtF~f~-i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~ 123 (138)
T cd08408 54 KSKTSIRRGQPDPEFKETFVFQ-VALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEM 123 (138)
T ss_pred eccceeecCCCCCcEeeeEEEE-CCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHH
Confidence 5799999999999999999998 999888889999999999999999999999988864433223346665
No 82
>KOG1030|consensus
Probab=99.44 E-value=1.2e-13 Score=96.13 Aligned_cols=61 Identities=23% Similarity=0.537 Sum_probs=53.4
Q ss_pred CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC
Q psy6192 1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 65 (174)
Q Consensus 1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~ 65 (174)
+++.||+++.+++||+|||.|.|. +.... ..|.+.|||+|.+++||+||.++|++..+...
T Consensus 37 ~q~lkT~~v~~n~NPeWNe~ltf~-v~d~~---~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 37 NQKLKTRVVYKNLNPEWNEELTFT-VKDPN---TPLKVTVYDKDTFSSDDFMGEATIPLKPLLEA 97 (168)
T ss_pred CeeeeeeeecCCCCCcccceEEEE-ecCCC---ceEEEEEEeCCCCCcccccceeeeccHHHHHH
Confidence 467899999999999999999998 65443 56999999999999999999999999876543
No 83
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.44 E-value=1.2e-13 Score=92.01 Aligned_cols=70 Identities=19% Similarity=0.508 Sum_probs=59.5
Q ss_pred CCccccccCCCCCccccEEEeCccccCCC-CcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~ 157 (174)
.++|++++++.||+|||.|.|. +...++ ....|.++|||++.++++++||++.+++.++. +...|++|..
T Consensus 38 ~~kT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~--~~~~~~~~~~ 108 (111)
T cd04041 38 LYSTRIIRKDLNPVWEETWFVL-VTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI--EDRNWMGRRE 108 (111)
T ss_pred cEeeeeECCCCCCccceeEEEE-eCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh--cCCCCCcccc
Confidence 3699999999999999999998 655443 34689999999999999999999999999886 5668888764
No 84
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.44 E-value=2.7e-13 Score=91.45 Aligned_cols=71 Identities=28% Similarity=0.433 Sum_probs=59.5
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEeccc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTKH 76 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~~ 76 (174)
+++||++++++.||.|||+|.|. +.... ...|.|.|||++.. ++++||++.++++.+..... ..|++|.+.
T Consensus 35 ~~~kT~vv~~t~nP~Wne~f~f~-i~~~~--~~~l~v~v~d~d~~-~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~ 106 (119)
T cd04036 35 EKKRTKTIKNSINPVWNETFEFR-IQSQV--KNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ 106 (119)
T ss_pred ccCccceecCCCCCccceEEEEE-eCccc--CCEEEEEEEECCCC-CCcccEEEEEEHHHCCCCCcEEEEEECCCC
Confidence 46799999999999999999997 76542 35799999999998 89999999999998775543 449999764
No 85
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.44 E-value=2.5e-13 Score=91.62 Aligned_cols=70 Identities=27% Similarity=0.431 Sum_probs=60.7
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~ 158 (174)
+++|++++++.||+|||.|.|. +... ....|.|+|||.+.. ++++||++.+++.++..+ ....|++|.+.
T Consensus 36 ~~kT~vv~~t~nP~Wne~f~f~-i~~~--~~~~l~v~v~d~d~~-~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~ 106 (119)
T cd04036 36 KKRTKTIKNSINPVWNETFEFR-IQSQ--VKNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ 106 (119)
T ss_pred cCccceecCCCCCccceEEEEE-eCcc--cCCEEEEEEEECCCC-CCcccEEEEEEHHHCCCCCcEEEEEECCCC
Confidence 5799999999999999999998 7654 235799999999988 899999999999998776 45789999875
No 86
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.44 E-value=3.8e-13 Score=94.33 Aligned_cols=72 Identities=24% Similarity=0.366 Sum_probs=61.9
Q ss_pred CCccccccCCCCCccccEEEeCccccC------CCCcceEEEEEEeCCCC-CCCceeEEEEEeCCcCCCC-CcCceeecc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRS------DLKLRSIEITVWDYTRY-GVNDFLGEVIIELSSSLCT-DEPEWFYLT 156 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~------~~~~~~l~i~v~d~~~~-~~~~~iG~~~l~l~~~~~~-~~~~W~~L~ 156 (174)
++||+++++|+||+|||+|.|. +... .+....|.++|||.+.+ ++|++||++.++|+.+... ....|++|.
T Consensus 42 k~KT~v~k~TlnPvfNE~f~f~-I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~ 120 (155)
T cd08690 42 SGKTSTIKDTNSPEYNESFKLN-INRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLM 120 (155)
T ss_pred eeecCcccCCCCCcccceEEEE-eccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhh
Confidence 6899999999999999999999 8654 35567899999999876 5799999999999998776 456799987
Q ss_pred c
Q psy6192 157 K 157 (174)
Q Consensus 157 ~ 157 (174)
.
T Consensus 121 ~ 121 (155)
T cd08690 121 D 121 (155)
T ss_pred h
Confidence 5
No 87
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.44 E-value=3.1e-13 Score=94.62 Aligned_cols=65 Identities=28% Similarity=0.503 Sum_probs=55.1
Q ss_pred CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC
Q psy6192 1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE 67 (174)
Q Consensus 1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~ 67 (174)
|++.||+++++++||+|||+|.|. +..... ...|.|+|||++..+++++||.+.++++.+.....
T Consensus 45 g~~~kT~v~~~t~nPvWNE~f~f~-v~~p~~-~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~ 109 (151)
T cd04018 45 GQKVKTSVKKNSYNPEWNEQIVFP-EMFPPL-CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGD 109 (151)
T ss_pred CEeeecceEcCCCCCCcceEEEEE-eeCCCc-CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCc
Confidence 456799999999999999999997 654443 36899999999999999999999999998765543
No 88
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.44 E-value=5.5e-13 Score=90.94 Aligned_cols=73 Identities=27% Similarity=0.407 Sum_probs=60.7
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEecc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTK 75 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~ 75 (174)
.++||++++++.||.|||+|.|. +.........|.|.|||++..+.+++||.+.++++++..+.. ..|++|.+
T Consensus 26 ~~~kT~v~~~~~nP~Wne~f~f~-~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~ 99 (127)
T cd08373 26 VKKKTRVLENELNPVWNETFEWP-LAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLD 99 (127)
T ss_pred EeeecceeCCCcCCcccceEEEE-eCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcC
Confidence 46899999999999999999998 654434457899999999999999999999999998876544 33888853
No 89
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.43 E-value=2.8e-13 Score=90.86 Aligned_cols=71 Identities=24% Similarity=0.341 Sum_probs=61.5
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~ 158 (174)
+++|+++++|.||.|||.|.|. +... ....|.|+|||.+..+++++||++.++++++..+ ..+.|++|.+.
T Consensus 33 ~~kT~v~~~t~nP~Wne~f~f~-~~~~--~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~ 104 (116)
T cd08376 33 KYKSKVCSKTLNPQWLEQFDLH-LFDD--QSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG 104 (116)
T ss_pred eEecccccCCCCCceeEEEEEE-ecCC--CCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC
Confidence 4789999999999999999998 6543 2478999999999998999999999999998766 45689999875
No 90
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.43 E-value=9.3e-14 Score=95.85 Aligned_cols=72 Identities=22% Similarity=0.411 Sum_probs=60.4
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~ 158 (174)
+++|++++++.||+|||.|.|. ++..++....|.|+|||++.++++++||++.|++... ..+..+|+.|...
T Consensus 53 ~~kT~v~~~t~nP~wne~f~f~-i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~-~~~~~~W~~~~~~ 124 (136)
T cd08402 53 KKKTTIKKRTLNPYYNESFSFE-VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT-GAELRHWSDMLAS 124 (136)
T ss_pred eeeccceeCCCCCcccceEEEE-CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC-ChHHHHHHHHHhC
Confidence 4689999999999999999999 8877777678999999999999999999999999863 2244577776553
No 91
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.42 E-value=7.4e-13 Score=91.50 Aligned_cols=75 Identities=24% Similarity=0.557 Sum_probs=62.5
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcC-------------cCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC-CC
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRS-------------DLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DE 67 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~-------------~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~-~~ 67 (174)
+++||++++++.||.|||+|.|. +... ++....|.|.|||++..+.+++||.+.+++..+... ..
T Consensus 34 ~~~rT~vv~~t~nP~Wne~f~f~-~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~ 112 (137)
T cd08675 34 DTKRTKVKKKTNNPRFDEAFYFE-LTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSH 112 (137)
T ss_pred CeeccceeeCCCCCCcceEEEEE-ccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcc
Confidence 46899999999999999999998 5443 345678999999999998999999999999987654 34
Q ss_pred CceEEecccc
Q psy6192 68 PEWFYLTKHT 77 (174)
Q Consensus 68 ~~w~~L~~~~ 77 (174)
..|++|.+.+
T Consensus 113 ~~W~~L~~~~ 122 (137)
T cd08675 113 QAWYFLQPRE 122 (137)
T ss_pred cceEecCCcC
Confidence 5699998764
No 92
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.42 E-value=1.3e-13 Score=95.19 Aligned_cols=71 Identities=24% Similarity=0.383 Sum_probs=60.1
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~ 157 (174)
+++|++++++.||+|||.|.|. ++..++.+..|.|+|||.+.++++++||++.+++.+. ....++|+.|..
T Consensus 53 ~~kT~v~~~t~~P~wne~F~f~-i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~-~~~~~~w~~~~~ 123 (136)
T cd08405 53 KKKTVIKKRTLNPVFNESFIFN-IPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG-GLELKHWKDMLS 123 (136)
T ss_pred cccCcceeCCCCCcccceEEEe-CCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC-CchHHHHHHHHh
Confidence 4789999999999999999998 8776676678999999999999999999999999875 224456776654
No 93
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.42 E-value=6.3e-13 Score=90.63 Aligned_cols=73 Identities=26% Similarity=0.399 Sum_probs=62.6
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeecccC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L~~~ 158 (174)
+++|++++++.||+|||.|.|. +.........|.|+|||++..+++++||++.++++++...+ ...|++|.+.
T Consensus 27 ~~kT~v~~~~~nP~Wne~f~f~-~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~ 100 (127)
T cd08373 27 KKKTRVLENELNPVWNETFEWP-LAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDS 100 (127)
T ss_pred eeecceeCCCcCCcccceEEEE-eCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCC
Confidence 4799999999999999999998 75443445889999999999989999999999999988764 4689999864
No 94
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.42 E-value=3.1e-13 Score=90.11 Aligned_cols=69 Identities=19% Similarity=0.495 Sum_probs=57.1
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcC-CcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEec
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT 74 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~-~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~ 74 (174)
.++|+++++++||.|||+|.|. +...++ ....|.|.|||++.++.+++||++.++++++. ....|+++.
T Consensus 38 ~~kT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~--~~~~~~~~~ 107 (111)
T cd04041 38 LYSTRIIRKDLNPVWEETWFVL-VTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI--EDRNWMGRR 107 (111)
T ss_pred cEeeeeECCCCCCccceeEEEE-eCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh--cCCCCCccc
Confidence 4799999999999999999997 655433 34689999999999999999999999999886 334477664
No 95
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.42 E-value=3.1e-13 Score=92.06 Aligned_cols=70 Identities=21% Similarity=0.393 Sum_probs=61.0
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~ 158 (174)
+++|++++++.||+|||.|.|. +... ...|.|+|||.+..+++++||++.+++.++... ....|++|++.
T Consensus 32 ~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 102 (126)
T cd08678 32 KYQSSTQKNTSNPFWDEHFLFE-LSPN---SKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGR 102 (126)
T ss_pred EEEeEEEecCCCCccCceEEEE-eCCC---CCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCC
Confidence 3799999999999999999998 7532 367999999999998999999999999998866 45689999875
No 96
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.42 E-value=1.1e-13 Score=95.57 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=60.2
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEecc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK 75 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~ 75 (174)
++||+++++++||.|||+|.|. ++...+....|.|.|||++.++++++||++.+++.. .......|++|..
T Consensus 53 ~~kT~v~k~t~nP~w~e~F~f~-v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~~~~~~~w~~l~~ 123 (136)
T cd08404 53 KKKTHVKKCTLNPVFNESFVFD-IPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA-SGSGGHHWKEVCN 123 (136)
T ss_pred eEcCccccCCCCCccCceEEEE-CCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC-CCchHHHHHHHHh
Confidence 5689999999999999999998 887777667899999999999999999999999987 3334455877643
No 97
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.42 E-value=2.5e-13 Score=93.65 Aligned_cols=69 Identities=22% Similarity=0.323 Sum_probs=57.5
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEe
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL 73 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L 73 (174)
|+||+++++++||+|||+|.|. ++.+++....|.|.|||++.++++++||.+.+..... ......|..+
T Consensus 53 k~kT~v~k~t~nP~~nE~f~F~-v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~-g~~~~hW~~m 121 (136)
T cd08406 53 KKKTSVKRDDTNPIFNEAMIFS-VPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAAS-GMGLSHWNQM 121 (136)
T ss_pred ccCCccccCCCCCeeceeEEEE-CCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCC-ChhHHHHHHH
Confidence 5689999999999999999998 9988888899999999999999999999999866532 2222336554
No 98
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.41 E-value=3.5e-13 Score=89.78 Aligned_cols=72 Identities=21% Similarity=0.421 Sum_probs=60.6
Q ss_pred CCccccccCCCCCccccEEEeCccc--cCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC----cCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIR--RSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD----EPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~--~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~----~~~W~~L~~ 157 (174)
+++|++++++.||.|||.|.|. +. ..++.+..|.|+|||.+.++++++||++.++++++.... ...|++|.+
T Consensus 33 ~~kT~~~~~t~nP~wne~f~f~-~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 33 KKYTSVKKGTNCPFYNEYFFFN-FHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred eeeeeEEeccCCCccccEEEEe-cCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 4789999999999999999998 53 334555789999999999888999999999999986552 358999864
No 99
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.41 E-value=4e-13 Score=90.73 Aligned_cols=71 Identities=25% Similarity=0.513 Sum_probs=57.1
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC---cCceeecccCCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD---EPEWFYLTKHKNS 161 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~---~~~W~~L~~~~~~ 161 (174)
+.+|++.++ .||.|||.|.|. +.. .. ..|.|+|||.+.+ +|++||++.|+|+++..+. ..+||+|.++-..
T Consensus 32 k~kT~v~~~-~nP~WnE~F~F~-~~~--~~-~~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~ 105 (127)
T cd08394 32 KSTTIAVRG-SQPCWEQDFMFE-INR--LD-LGLVIELWNKGLI-WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEVNM 105 (127)
T ss_pred EeEeeECCC-CCCceeeEEEEE-EcC--CC-CEEEEEEEeCCCc-CCCceEEEEEEhHHcccCCCCCCCccEecChHHhc
Confidence 357888877 599999999998 643 33 4599999998865 9999999999999988663 2589999985443
No 100
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.41 E-value=2.1e-13 Score=93.73 Aligned_cols=70 Identities=30% Similarity=0.572 Sum_probs=58.7
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEec
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT 74 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~ 74 (174)
+++|+++++++||.|||+|.|. +..+++....|.|.|||++..+++++||.+.++++.. ......|+++.
T Consensus 51 ~~kT~v~~~t~nP~wne~f~f~-~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~-~~~~~~W~~~l 120 (133)
T cd08384 51 KHKTQVKKKTLNPEFNEEFFYD-IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAK-GERLRHWLDCL 120 (133)
T ss_pred CceeeeEeccCCCCcccEEEEE-CCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCCC-CchHHHHHHHH
Confidence 5789999999999999999998 8877776678999999999999999999999999752 22334487764
No 101
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.40 E-value=5e-13 Score=89.89 Aligned_cols=76 Identities=22% Similarity=0.477 Sum_probs=60.3
Q ss_pred CCcccccc-CCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCCC-C
Q psy6192 85 SNLSKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHKN-S 161 (174)
Q Consensus 85 ~~kT~~~~-~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~~-~ 161 (174)
+++|++++ .+.||+|||.|.|. +... ....|.|+|||.+..+ +++||++.+++.++... ...+|++|...+. .
T Consensus 34 ~~kT~~~~~~~~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~ 109 (118)
T cd08681 34 TKKTKTDFRGGQHPEWDEELRFE-ITED--KKPILKVAVFDDDKRK-PDLIGDTEVDLSPALKEGEFDDWYELTLKGRYA 109 (118)
T ss_pred ccccccccCCCCCCccCceEEEE-ecCC--CCCEEEEEEEeCCCCC-CcceEEEEEecHHHhhcCCCCCcEEeccCCcEe
Confidence 47888765 47999999999998 7654 2368999999998775 89999999999997665 5579999987543 3
Q ss_pred CCC
Q psy6192 162 GSN 164 (174)
Q Consensus 162 ~~~ 164 (174)
|.+
T Consensus 110 G~i 112 (118)
T cd08681 110 GEV 112 (118)
T ss_pred eEE
Confidence 444
No 102
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.40 E-value=6.3e-13 Score=89.89 Aligned_cols=71 Identities=27% Similarity=0.472 Sum_probs=61.3
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCCC
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHKN 160 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~~ 160 (174)
++|++++++.||+|||.|.|. +.. .. ..|.|+|||.+..+++++||++.+++.++..+ ..+.|++|.+.+.
T Consensus 35 ~kT~~~~~t~nP~Wne~f~f~-v~~--~~-~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~ 106 (121)
T cd04042 35 YKSKTIYKNLNPVWDEKFTLP-IED--VT-QPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS 106 (121)
T ss_pred EEeeeccCCCCCccceeEEEE-ecC--CC-CeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC
Confidence 699999999999999999998 653 23 68999999999999999999999999998866 5678999987443
No 103
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.40 E-value=6.7e-13 Score=87.60 Aligned_cols=71 Identities=25% Similarity=0.361 Sum_probs=58.0
Q ss_pred CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC---CCceEEecccc
Q psy6192 1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD---EPEWFYLTKHT 77 (174)
Q Consensus 1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~---~~~w~~L~~~~ 77 (174)
|+++||++++++.||.|||+|.|. +.... ...|.|.|||++. +++||.+.++|..+...+ ...|++|.+.+
T Consensus 31 ~~~~kT~v~~~t~nP~Wne~f~f~-v~~~~--~~~l~v~v~d~~~---~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 31 KTTQKSKVKERTNNPVWEEGFTFL-VRNPE--NQELEIEVKDDKT---GKSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred CEEEeCccccCCCCCcccceEEEE-eCCCC--CCEEEEEEEECCC---CCccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 356899999999999999999998 65433 3579999999986 789999999999877554 34599997653
No 104
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.40 E-value=3.4e-13 Score=89.43 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=53.6
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~ 147 (174)
++||+++++++||+|||.|.|. +..... ...|.|.|||++..+++++||++.++|.++..+
T Consensus 38 ~~kT~v~~~t~nPvWne~f~f~-v~~~~~-~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 38 VFRTSWRRHTLNPVFNERLAFE-VYPHEK-NFDIQFKVLDKDKFSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred eEeeeeecCCCCCcccceEEEE-EeCccC-CCEEEEEEEECCCCCCCcceEEEEEEHHHHHhh
Confidence 3689999999999999999998 765443 368999999999999999999999999998765
No 105
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.40 E-value=5.3e-13 Score=91.28 Aligned_cols=70 Identities=20% Similarity=0.415 Sum_probs=56.5
Q ss_pred ceEeceeecCCC-CCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEe
Q psy6192 2 FKEFAKTLANTN-DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL 73 (174)
Q Consensus 2 ~k~rT~~~~~t~-nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L 73 (174)
.|+||+++++|+ ||+|||+|.|+ ++.++. ...|.|.|||++..+++++||.+.+........+...|.++
T Consensus 51 ~KkKT~v~k~t~~~P~fNEsF~Fd-v~~~~~-~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m 121 (135)
T cd08692 51 YKKKTRLVKSSNGQVKWGETMIFP-VTQQEH-GIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDT 121 (135)
T ss_pred eeecCccEECCCCCceecceEEEe-CCchhh-eeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHH
Confidence 468899999995 69999999998 988754 57899999999999999999999998865433333446554
No 106
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.39 E-value=3e-13 Score=93.44 Aligned_cols=71 Identities=15% Similarity=0.278 Sum_probs=58.1
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC-CCCceEEe
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYL 73 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~-~~~~w~~L 73 (174)
+++||+++++++||.|||+|.|. ++.+++....|.|.|||++..+++++||++.+........ +...|..+
T Consensus 51 ~~~kT~v~~~~~nP~fnE~F~f~-i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~ 122 (137)
T cd08409 51 KTKKTEVVDGAASPSFNESFSFK-VTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDM 122 (137)
T ss_pred eeeecccEeCCCCCcccceEEEE-CCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHH
Confidence 36789999999999999999998 9988888889999999999999999999999876433322 22336554
No 107
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.39 E-value=2.1e-13 Score=94.02 Aligned_cols=71 Identities=25% Similarity=0.410 Sum_probs=56.5
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEec
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT 74 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~ 74 (174)
+++|+++++|+||.|||+|.|. ++.+++....|.|.|||++..+++++||.+.+............|..|.
T Consensus 52 ~~kT~v~~~t~nP~wnE~F~f~-i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~ 122 (135)
T cd08410 52 TKKTSCMRGTIDPFYNESFSFK-VPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRML 122 (135)
T ss_pred eEcCccccCCCCCccceeEEEe-CCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHH
Confidence 5789999999999999999998 8887777678999999999999999999987654333222233466653
No 108
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.38 E-value=1.3e-12 Score=88.38 Aligned_cols=70 Identities=26% Similarity=0.444 Sum_probs=58.9
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH 76 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~ 76 (174)
.++|++++++.||.|||+|.|. +.. . ...|.|.|||++..+++++||.+.++++++..+. ...|++|.+.
T Consensus 34 ~~kT~~~~~t~nP~Wne~f~f~-v~~--~-~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~ 104 (121)
T cd04042 34 VYKSKTIYKNLNPVWDEKFTLP-IED--V-TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDP 104 (121)
T ss_pred EEEeeeccCCCCCccceeEEEE-ecC--C-CCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCC
Confidence 5789999999999999999997 642 2 3679999999999999999999999999887554 3459998644
No 109
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.38 E-value=3.4e-13 Score=92.78 Aligned_cols=71 Identities=20% Similarity=0.385 Sum_probs=59.7
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~ 157 (174)
+++|++++++.||.|||.|.|. ++...+....|.|+|||++..+++++||++.|++... ..+.++|+.+..
T Consensus 52 ~~kT~v~~~t~nP~wne~f~f~-i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~-~~~~~~w~~~~~ 122 (134)
T cd08403 52 KKKTSVKKNTLNPTYNEALVFD-VPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNAD-GQGREHWNEMLA 122 (134)
T ss_pred eecCCcccCCCCCcccceEEEE-CCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCCCC-CchHHHHHHHHH
Confidence 3689999999999999999998 8777676678999999999999999999999998732 335567887655
No 110
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.38 E-value=2.1e-12 Score=88.02 Aligned_cols=70 Identities=20% Similarity=0.387 Sum_probs=57.9
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeecccCC
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKHK 159 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L~~~~ 159 (174)
.+|+++ ++.||.|||.|.|. +....+ ..+.|.|||.+..+++++||++.+++.++..++ .+.||+|.+..
T Consensus 36 ~kT~v~-~~~nP~WnE~f~f~-~~~~~~--~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~ 106 (126)
T cd08400 36 ARTKVR-EGPNPVWSEEFVFD-DLPPDV--NSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSAS 106 (126)
T ss_pred EEeecC-CCCCCccCCEEEEe-cCCCCc--CEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCC
Confidence 478875 58999999999998 654433 468899999999999999999999999987764 46899998853
No 111
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.36 E-value=1.6e-12 Score=89.23 Aligned_cols=70 Identities=29% Similarity=0.489 Sum_probs=59.8
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-------cCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-------EPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-------~~~W~~L~~ 157 (174)
+++|++++++.||+|||.|.|. +... ...|.|+|||.+..+++++||++.+++.++.... ...||+|.+
T Consensus 40 ~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~ 115 (133)
T cd04033 40 SVQTKTIKKTLNPKWNEEFFFR-VNPR---EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP 115 (133)
T ss_pred ceeeeEEcCCCCCcEeeEEEEE-EcCC---CCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeee
Confidence 3689999999999999999998 7543 2579999999999999999999999999987652 248999987
Q ss_pred C
Q psy6192 158 H 158 (174)
Q Consensus 158 ~ 158 (174)
.
T Consensus 116 ~ 116 (133)
T cd04033 116 R 116 (133)
T ss_pred c
Confidence 4
No 112
>KOG1030|consensus
Probab=99.36 E-value=5.4e-13 Score=92.97 Aligned_cols=59 Identities=22% Similarity=0.561 Sum_probs=52.8
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~ 147 (174)
+.||+++++++||+|||.|+|. +.... ..|.++|||+|.++++||||.++|++..+...
T Consensus 39 ~lkT~~v~~n~NPeWNe~ltf~-v~d~~---~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 39 KLKTRVVYKNLNPEWNEELTFT-VKDPN---TPLKVTVYDKDTFSSDDFMGEATIPLKPLLEA 97 (168)
T ss_pred eeeeeeecCCCCCcccceEEEE-ecCCC---ceEEEEEEeCCCCCcccccceeeeccHHHHHH
Confidence 4689999999999999999999 76554 56999999999999999999999999887654
No 113
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.36 E-value=2.4e-12 Score=87.69 Aligned_cols=72 Identities=29% Similarity=0.549 Sum_probs=59.4
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC---CC-CCceEEeccc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC---TD-EPEWFYLTKH 76 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~---~~-~~~w~~L~~~ 76 (174)
++++|+++++++||.|||+|.|. +.. .....|.|.|||++..+.+++||.+.++++++.. .. ...|+.|.+.
T Consensus 35 ~~~kT~~~~~t~~P~Wne~f~~~-~~~--~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~ 110 (128)
T cd04024 35 QRFKTQTIPNTLNPKWNYWCEFP-IFS--AQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKST 110 (128)
T ss_pred EEEecceecCCcCCccCCcEEEE-ecC--CCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCc
Confidence 46799999999999999999997 654 2346899999999999899999999999998763 12 3459999754
No 114
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.36 E-value=1.9e-12 Score=90.71 Aligned_cols=72 Identities=17% Similarity=0.307 Sum_probs=59.2
Q ss_pred CCccccccC-CCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-----CcCceeecccC
Q psy6192 85 SNLSKTLAN-TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-----DEPEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~-t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-----~~~~W~~L~~~ 158 (174)
+++|+++++ +.||+|||.|.|. +... ....+.|.|||.+..+++++||++.|+++++... ...+||+|.+.
T Consensus 33 ~~kTk~~~~~t~nP~WNE~F~f~-v~~~--~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~ 109 (150)
T cd04019 33 VLRTRPSQTRNGNPSWNEELMFV-AAEP--FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERP 109 (150)
T ss_pred EeeeEeccCCCCCCcccCcEEEE-ecCc--cCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCC
Confidence 368888866 6999999999998 6532 2368999999999888999999999999998643 34799999985
Q ss_pred C
Q psy6192 159 K 159 (174)
Q Consensus 159 ~ 159 (174)
+
T Consensus 110 ~ 110 (150)
T cd04019 110 G 110 (150)
T ss_pred C
Confidence 4
No 115
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.36 E-value=4.1e-13 Score=92.61 Aligned_cols=69 Identities=26% Similarity=0.406 Sum_probs=57.0
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEe
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL 73 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L 73 (174)
++||++++++.||.|||+|.|. ++.+.+....|.|.|||++.++++++||.+.+++... ......|+++
T Consensus 53 ~~kT~v~~~t~~P~wne~F~f~-i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~-~~~~~~w~~~ 121 (136)
T cd08405 53 KKKTVIKKRTLNPVFNESFIFN-IPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG-GLELKHWKDM 121 (136)
T ss_pred cccCcceeCCCCCcccceEEEe-CCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC-CchHHHHHHH
Confidence 4689999999999999999998 8777666678999999999999999999999999865 2222335554
No 116
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.36 E-value=1.7e-12 Score=87.71 Aligned_cols=78 Identities=22% Similarity=0.399 Sum_probs=66.8
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccCCCCCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHKNSGSN 164 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~~~~~~~ 164 (174)
+++|++++++.||.|||.|.|. +... ...|.|+|||.+..+++++||++.+++.++.....+.||.|.+.++-..+
T Consensus 35 ~~kT~~~~~t~~P~Wne~f~~~-v~~~---~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 35 KGRTVTISNTLNPVWDEVLYVP-VTSP---NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKKNEDGKYVEYDDEEERLK 110 (120)
T ss_pred eeceeEECCCcCCccCceEEEE-ecCC---CCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCCCCCceEEecCCCcceee
Confidence 3789999999999999999997 6543 26899999999999999999999999999988888899999987765555
Q ss_pred Cc
Q psy6192 165 PT 166 (174)
Q Consensus 165 ~~ 166 (174)
+.
T Consensus 111 ~~ 112 (120)
T cd04045 111 RL 112 (120)
T ss_pred Ee
Confidence 54
No 117
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.35 E-value=2.5e-12 Score=86.85 Aligned_cols=68 Identities=28% Similarity=0.553 Sum_probs=54.9
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC---CceEEecc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE---PEWFYLTK 75 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~---~~w~~L~~ 75 (174)
+|.+|++.++ .||.|||+|.|. +.. .. ..|.|.|||++.+ .|++||.+.++|+++...+. ..||+|.+
T Consensus 31 ~k~kT~v~~~-~nP~WnE~F~F~-~~~--~~-~~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 31 VKSTTIAVRG-SQPCWEQDFMFE-INR--LD-LGLVIELWNKGLI-WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred EEeEeeECCC-CCCceeeEEEEE-EcC--CC-CEEEEEEEeCCCc-CCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 4668888887 499999999997 543 33 4499999999965 89999999999999775542 46999974
No 118
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.35 E-value=2.6e-12 Score=86.38 Aligned_cols=71 Identities=21% Similarity=0.449 Sum_probs=57.2
Q ss_pred ceEeceeec-CCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192 2 FKEFAKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH 76 (174)
Q Consensus 2 ~k~rT~~~~-~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~ 76 (174)
++++|+++. +++||.|||+|.|. +.... ...|.|.|||++..+ +++||++.++++++.... ...|++|...
T Consensus 33 ~~~kT~~~~~~~~nP~Wne~f~f~-v~~~~--~~~l~i~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~ 105 (118)
T cd08681 33 VTKKTKTDFRGGQHPEWDEELRFE-ITEDK--KPILKVAVFDDDKRK-PDLIGDTEVDLSPALKEGEFDDWYELTLK 105 (118)
T ss_pred CccccccccCCCCCCccCceEEEE-ecCCC--CCEEEEEEEeCCCCC-CcceEEEEEecHHHhhcCCCCCcEEeccC
Confidence 467888875 57899999999998 76542 467999999999876 899999999999875543 4569999754
No 119
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.35 E-value=3e-12 Score=86.87 Aligned_cols=71 Identities=28% Similarity=0.396 Sum_probs=59.7
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCC--CceeEEEEEeCCcCCCCC--cCceeecccCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELSSSLCTD--EPEWFYLTKHKN 160 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~--~~~iG~~~l~l~~~~~~~--~~~W~~L~~~~~ 160 (174)
.++|++++++.||.|||.|.|. +.. ...|.|+|||++..+. +++||++.+++.++.... ...|++|.+.+.
T Consensus 34 ~~kT~v~~~t~nP~Wne~f~~~-~~~----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~ 108 (123)
T cd08382 34 THSTDVAKKTLDPKWNEHFDLT-VGP----SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKK 108 (123)
T ss_pred ceEccEEcCCCCCcccceEEEE-eCC----CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCC
Confidence 4799999999999999999998 754 3789999999988765 579999999999987553 468999977554
No 120
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.35 E-value=1.7e-12 Score=87.65 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=58.3
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCC----CCCCceEEEEEEecccccCCCCC-ceEEeccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTR----YGVNDFLGEVIIELSSSLCTDEP-EWFYLTKH 76 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~----~~~~~~lG~~~~~l~~~~~~~~~-~w~~L~~~ 76 (174)
++||+++++++||.|||+|.|. +..+. ...|.|.|||++. .+.+++||++.++++++...... .|+.|.+.
T Consensus 40 ~~kT~vi~~t~nP~wne~f~f~-~~~~~--~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~~ 115 (120)
T cd04048 40 IGRTEVIKNNLNPDFVTTFTVD-YYFEE--VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKGG 115 (120)
T ss_pred eccEeEeCCCCCCCceEEEEEE-EEeEe--eeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccCC
Confidence 4799999999999999999997 55444 3579999999997 88999999999999998765433 37777443
No 121
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.35 E-value=5.1e-12 Score=86.10 Aligned_cols=70 Identities=21% Similarity=0.388 Sum_probs=56.4
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEeccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTKH 76 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~~ 76 (174)
+.||+++ ++.||.|||+|.|. +...++ ..|.|.|||++..+++++||.+.++|+.+..... ..|+.|.+.
T Consensus 35 ~~kT~v~-~~~nP~WnE~f~f~-~~~~~~--~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~ 105 (126)
T cd08400 35 VARTKVR-EGPNPVWSEEFVFD-DLPPDV--NSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSA 105 (126)
T ss_pred EEEeecC-CCCCCccCCEEEEe-cCCCCc--CEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccC
Confidence 3578874 68999999999997 654443 3688999999999999999999999998775543 459999754
No 122
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.35 E-value=2.2e-12 Score=87.00 Aligned_cols=70 Identities=27% Similarity=0.430 Sum_probs=59.6
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeecccC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L~~~ 158 (174)
.++|++++++.||+|||.|.|. +... ....|.|+|||.+.. ++++||++.+++.++...+ ...||+|.+.
T Consensus 40 ~~kT~~~~~t~~P~W~e~f~~~-v~~~--~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 110 (121)
T cd08391 40 TFKSKVIKENLNPKWNEVYEAV-VDEV--PGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV 110 (121)
T ss_pred eEEccccCCCCCCcccceEEEE-eCCC--CCCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCC
Confidence 4799999999999999999998 6533 346899999999888 8999999999999987664 5699999864
No 123
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.35 E-value=3.7e-12 Score=87.25 Aligned_cols=73 Identities=30% Similarity=0.609 Sum_probs=62.0
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 76 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~ 76 (174)
.++||++++++.||.|||+|.|. +...+. ...|.|.|||++..+.+++||.+.++++++.......||+|...
T Consensus 50 ~~~rT~v~~~~~~P~wne~f~~~-~~~~~~-~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~ 122 (131)
T cd04026 50 TKQKTKTIKKTLNPVWNETFTFD-LKPADK-DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMPVDGWYKLLNQ 122 (131)
T ss_pred ceecceeecCCCCCCccceEEEe-CCchhc-CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcCccCceEECcCc
Confidence 35789999999999999999998 765543 46899999999998899999999999998876555669998654
No 124
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.35 E-value=3.5e-12 Score=86.26 Aligned_cols=68 Identities=18% Similarity=0.319 Sum_probs=58.9
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC--CcCceeeccc
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT--DEPEWFYLTK 157 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~--~~~~W~~L~~ 157 (174)
++|++++++.||+|||.|.|. +... ...|.|.|||.+..+++++||++.++++.+... ..++|++|.+
T Consensus 35 ~kT~v~~~t~nP~Wne~f~~~-~~~~---~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~ 104 (121)
T cd04054 35 IRTATVWKTLNPFWGEEYTVH-LPPG---FHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTE 104 (121)
T ss_pred eeeeeEcCCCCCcccceEEEe-eCCC---CCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECee
Confidence 699999999999999999998 6533 267999999999999999999999999887654 3579999987
No 125
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.34 E-value=1.9e-12 Score=87.45 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=59.6
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCC----CCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTR----YGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~----~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~ 158 (174)
.++|++++++.||+|||.|.|. +..+. ...|.|+|||++. .+++++||++.+++.++... ....|+.|.+.
T Consensus 40 ~~kT~vi~~t~nP~wne~f~f~-~~~~~--~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~~ 115 (120)
T cd04048 40 IGRTEVIKNNLNPDFVTTFTVD-YYFEE--VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKGG 115 (120)
T ss_pred eccEeEeCCCCCCCceEEEEEE-EEeEe--eeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccCC
Confidence 3799999999999999999997 55433 2479999999997 78999999999999999876 45679998553
No 126
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.34 E-value=5.8e-13 Score=91.89 Aligned_cols=69 Identities=25% Similarity=0.445 Sum_probs=56.8
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEe
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL 73 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L 73 (174)
+++|+++++++||.|||+|.|. ++.+.+....|.|.|||++.++++++||++.+++... ......|+++
T Consensus 53 ~~kT~v~~~t~nP~wne~f~f~-i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~-~~~~~~W~~~ 121 (136)
T cd08402 53 KKKTTIKKRTLNPYYNESFSFE-VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT-GAELRHWSDM 121 (136)
T ss_pred eeeccceeCCCCCcccceEEEE-CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC-ChHHHHHHHH
Confidence 5689999999999999999998 8877766678999999999999999999999999753 2222336655
No 127
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.34 E-value=3.1e-12 Score=87.00 Aligned_cols=71 Identities=23% Similarity=0.445 Sum_probs=59.1
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC----CcCceeecccCC
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT----DEPEWFYLTKHK 159 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~----~~~~W~~L~~~~ 159 (174)
++|++++++.||.|||.|.|. +... ....|.|+|||.+..+++++||++.+++..+... ....|++|.+.|
T Consensus 38 ~kT~~~~~t~~P~Wne~f~f~-i~~~--~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~~g 112 (126)
T cd04043 38 AKTRTIYDTLNPRWDEEFELE-VPAG--EPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDTQG 112 (126)
T ss_pred ecccEecCCCCCcccceEEEE-cCCC--CCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcCCCC
Confidence 699999999999999999998 7654 2468999999999888999999999999875432 345899998744
No 128
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.34 E-value=4.3e-12 Score=86.07 Aligned_cols=70 Identities=27% Similarity=0.353 Sum_probs=57.8
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCC--CceEEEEEEecccccCCC--CCceEEeccc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELSSSLCTD--EPEWFYLTKH 76 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~--~~~lG~~~~~l~~~~~~~--~~~w~~L~~~ 76 (174)
+.+||+++++++||.|||+|.|. +.. ...|.|.|||++..++ +++||++.+++.++.... ...|++|.+.
T Consensus 33 ~~~kT~v~~~t~nP~Wne~f~~~-~~~----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 106 (123)
T cd08382 33 QTHSTDVAKKTLDPKWNEHFDLT-VGP----SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKL 106 (123)
T ss_pred cceEccEEcCCCCCcccceEEEE-eCC----CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecC
Confidence 46799999999999999999998 654 4689999999998875 589999999999976443 3569988543
No 129
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.34 E-value=3.2e-12 Score=87.71 Aligned_cols=69 Identities=25% Similarity=0.445 Sum_probs=59.3
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC---CcCceeecccCC
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT---DEPEWFYLTKHK 159 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~---~~~~W~~L~~~~ 159 (174)
.+|++++++.||.|||+|.|. +. ....|.|.|||.+..+.+++||++.++++++..+ ..+.|++|.+.|
T Consensus 49 ~kT~~~~~t~~P~Wne~f~~~-v~----~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~G 120 (132)
T cd04014 49 GKTSTKPKTNSPVWNEEFTTE-VH----NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEPQG 120 (132)
T ss_pred eEEeEcCCCCCCCcceeEEEE-cC----CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccCCc
Confidence 588999999999999999998 75 2368999999999888899999999999998762 457999998654
No 130
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.34 E-value=7.6e-13 Score=91.07 Aligned_cols=69 Identities=22% Similarity=0.411 Sum_probs=56.7
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEe
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL 73 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L 73 (174)
+++|+++++++||.|||+|.|. +..+.+....|.|.|||++..+++++||++.+++... ......|+++
T Consensus 52 ~~kT~v~~~t~nP~wne~f~f~-i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~-~~~~~~w~~~ 120 (134)
T cd08403 52 KKKTSVKKNTLNPTYNEALVFD-VPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNAD-GQGREHWNEM 120 (134)
T ss_pred eecCCcccCCCCCcccceEEEE-CCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCCCC-CchHHHHHHH
Confidence 5689999999999999999998 8777776678999999999999999999999987632 2223347665
No 131
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.34 E-value=4.4e-12 Score=86.35 Aligned_cols=61 Identities=23% Similarity=0.450 Sum_probs=50.8
Q ss_pred CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccccc
Q psy6192 1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL 63 (174)
Q Consensus 1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~ 63 (174)
|+++||+++++++||+|||+|.|...... ....|.|+|||++.++.+++||.+.++|....
T Consensus 58 ~~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 58 GQEKRTEVIWNNNNPRWNATFDFGSVELS--PGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CccccCceecCCCCCcCCCEEEEecccCC--CCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 35689999999999999999999612222 34689999999999999999999999998544
No 132
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.34 E-value=3.2e-12 Score=87.10 Aligned_cols=71 Identities=30% Similarity=0.573 Sum_probs=60.4
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCC---C-CcCceeecccC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC---T-DEPEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~---~-~~~~W~~L~~~ 158 (174)
+++|++++++.||.|||.|.|. +.. .....|.|+|||.+..+++++||++.+++.++.. . ....||.|.+.
T Consensus 36 ~~kT~~~~~t~~P~Wne~f~~~-~~~--~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~ 110 (128)
T cd04024 36 RFKTQTIPNTLNPKWNYWCEFP-IFS--AQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKST 110 (128)
T ss_pred EEecceecCCcCCccCCcEEEE-ecC--CCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCc
Confidence 3789999999999999999998 654 3347899999999998899999999999999863 2 34689999875
No 133
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.33 E-value=7.1e-13 Score=90.97 Aligned_cols=72 Identities=22% Similarity=0.341 Sum_probs=63.2
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~ 158 (174)
+++|++++++.||.|||+|.|. +....+....|.|+|||.+..+++++||.+.+++++ ...+.++|+.|...
T Consensus 52 ~~~T~~~~~~~~P~wne~f~f~-i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~-~~~~~~~W~~l~~~ 123 (134)
T cd00276 52 KKKTSVKKGTLNPVFNEAFSFD-VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS-GGEELEHWNEMLAS 123 (134)
T ss_pred eecCcceecCCCCeeeeeEEEE-CCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC-CCcHHHHHHHHHhC
Confidence 4689999999999999999999 887766668899999999988899999999999998 44467899998875
No 134
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.33 E-value=6e-12 Score=85.41 Aligned_cols=78 Identities=19% Similarity=0.359 Sum_probs=62.3
Q ss_pred ceEeceeecC-CCCCccCceEEcCCcCcCcC-CcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEecccce
Q psy6192 2 FKEFAKTLAN-TNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKHTL 78 (174)
Q Consensus 2 ~k~rT~~~~~-t~nP~w~E~f~f~~v~~~~~-~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~~~ 78 (174)
++++|++.++ +.||.|||+|.|. +..... ....|.|.|||.+.++.+++||.+.+++.++...+ ...|+.|.+...
T Consensus 33 ~~~~T~~~~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~ 111 (124)
T cd04049 33 QERKSKVAKGDGRNPEWNEKFKFT-VEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAKY 111 (124)
T ss_pred EeeeeeEcCCCCCCCcccceEEEE-ecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeeccce
Confidence 4568888874 8999999999998 765432 24679999999999999999999999999887554 445999988765
Q ss_pred Ee
Q psy6192 79 EL 80 (174)
Q Consensus 79 ~l 80 (174)
++
T Consensus 112 ~~ 113 (124)
T cd04049 112 NV 113 (124)
T ss_pred EE
Confidence 44
No 135
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.33 E-value=1.5e-12 Score=86.76 Aligned_cols=74 Identities=23% Similarity=0.388 Sum_probs=60.4
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC--CcCceeecccCCCCCC
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT--DEPEWFYLTKHKNSGS 163 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~--~~~~W~~L~~~~~~~~ 163 (174)
++|++++++.||+|||.|.|. +... ....|.|.|||.+.+ ++++||.+.++|.++... ....||+|++ +..|.
T Consensus 27 ~kT~v~~~t~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~~~~w~~L~~-~~~G~ 101 (111)
T cd04052 27 YTTRVKKKTNNPSWNASTEFL-VTDR--RKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSVGQQWFPLSG-NGQGR 101 (111)
T ss_pred EEEeeeccCCCCccCCceEEE-ecCc--CCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhccceeEECCC-CCCCE
Confidence 688999999999999999998 6532 346799999999988 899999999999988544 3469999985 34454
Q ss_pred C
Q psy6192 164 N 164 (174)
Q Consensus 164 ~ 164 (174)
+
T Consensus 102 i 102 (111)
T cd04052 102 I 102 (111)
T ss_pred E
Confidence 4
No 136
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.33 E-value=2.8e-12 Score=89.97 Aligned_cols=64 Identities=27% Similarity=0.588 Sum_probs=55.8
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeec
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL 155 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L 155 (174)
.++|++++++.||+|||.|.|. +.. +....|.|+|||.+ +++||++.++++++...+..+||+|
T Consensus 90 ~~kT~v~~~tlnP~WnE~F~f~-v~~--~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L 153 (153)
T cd08676 90 IKVTEVKPQTLNPVWNETFRFE-VED--VSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL 153 (153)
T ss_pred cEecceecCCCCCccccEEEEE-ecc--CCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence 4789999999999999999998 643 34578999999987 8899999999999986678899987
No 137
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.33 E-value=6.2e-12 Score=85.52 Aligned_cols=72 Identities=22% Similarity=0.428 Sum_probs=58.5
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC----CCCceEEecccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT----DEPEWFYLTKHT 77 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~----~~~~w~~L~~~~ 77 (174)
..||+++++++||.|||+|.|. +.... ...|.|.|||++..+.+++||++.++|+..... ....|++|.+.+
T Consensus 37 ~~kT~~~~~t~~P~Wne~f~f~-i~~~~--~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~~g 112 (126)
T cd04043 37 IAKTRTIYDTLNPRWDEEFELE-VPAGE--PLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDTQG 112 (126)
T ss_pred eecccEecCCCCCcccceEEEE-cCCCC--CCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcCCCC
Confidence 4699999999999999999998 76542 467999999999988999999999999875432 233599997643
No 138
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.32 E-value=6e-12 Score=84.86 Aligned_cols=70 Identities=26% Similarity=0.406 Sum_probs=58.5
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEecc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTK 75 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~ 75 (174)
+.++|++++++.||.|||+|.|. +... ....|.|.|||++.. .+++||.+.++++++.... ...|++|.+
T Consensus 39 ~~~kT~~~~~t~~P~W~e~f~~~-v~~~--~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 109 (121)
T cd08391 39 QTFKSKVIKENLNPKWNEVYEAV-VDEV--PGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLED 109 (121)
T ss_pred EeEEccccCCCCCCcccceEEEE-eCCC--CCCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccCccceEEECcC
Confidence 45799999999999999999987 6433 346899999999988 8899999999999877554 345999975
No 139
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.32 E-value=3.5e-12 Score=87.70 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=53.1
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCc--CCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSD--LKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 64 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~--~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~ 64 (174)
.++||+++++|+||+|||+|.|. +.... .....|.|.|||++.++++++||++.++|+++..
T Consensus 55 ~~~kT~v~~~t~nP~wnE~f~f~-i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 55 PTPKTQVKKKTLFPLFDESFEFN-VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred cccccccCcCCCCCccCCEEEEE-echhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 36799999999999999999998 66532 2346899999999999999999999999988763
No 140
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.32 E-value=6.5e-12 Score=88.03 Aligned_cols=73 Identities=16% Similarity=0.280 Sum_probs=58.6
Q ss_pred ceEeceeecC-CCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC-----CCCceEEecc
Q psy6192 2 FKEFAKTLAN-TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-----DEPEWFYLTK 75 (174)
Q Consensus 2 ~k~rT~~~~~-t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~-----~~~~w~~L~~ 75 (174)
++++|+++.+ ++||.|||+|.|. +... ....|.|.|||++..+++++||.+.++|+.+... ....|++|..
T Consensus 32 ~~~kTk~~~~~t~nP~WNE~F~f~-v~~~--~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~ 108 (150)
T cd04019 32 QVLRTRPSQTRNGNPSWNEELMFV-AAEP--FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLER 108 (150)
T ss_pred EEeeeEeccCCCCCCcccCcEEEE-ecCc--cCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcC
Confidence 5678998876 6999999999997 6432 2357999999999988999999999999987643 1345999976
Q ss_pred cc
Q psy6192 76 HT 77 (174)
Q Consensus 76 ~~ 77 (174)
..
T Consensus 109 ~~ 110 (150)
T cd04019 109 PG 110 (150)
T ss_pred CC
Confidence 54
No 141
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.31 E-value=5.6e-12 Score=85.56 Aligned_cols=72 Identities=22% Similarity=0.379 Sum_probs=60.4
Q ss_pred CccccccC-CCCCccccEEEeCccccCCC-CcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192 86 NLSKTLAN-TNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH 158 (174)
Q Consensus 86 ~kT~~~~~-t~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~ 158 (174)
++|++.++ +.||.|||.|.|. +..... ....|.|.|||.+.++++++||++.+++.++... ..+.|+.|.+.
T Consensus 35 ~~T~~~~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 35 RKSKVAKGDGRNPEWNEKFKFT-VEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred eeeeEcCCCCCCCcccceEEEE-ecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 57777764 8999999999998 765532 2367999999999988999999999999998766 45799999884
No 142
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.29 E-value=8e-12 Score=85.74 Aligned_cols=70 Identities=27% Similarity=0.472 Sum_probs=58.1
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-------CCceEEecc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-------EPEWFYLTK 75 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-------~~~w~~L~~ 75 (174)
+++|+++++|.||.|||+|.|. +... ...|.|.|||++.++++++||.+.++++++.... ...|++|.+
T Consensus 40 ~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~ 115 (133)
T cd04033 40 SVQTKTIKKTLNPKWNEEFFFR-VNPR---EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP 115 (133)
T ss_pred ceeeeEEcCCCCCcEeeEEEEE-EcCC---CCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeee
Confidence 4689999999999999999997 6543 2569999999999999999999999999877542 235999875
Q ss_pred c
Q psy6192 76 H 76 (174)
Q Consensus 76 ~ 76 (174)
.
T Consensus 116 ~ 116 (133)
T cd04033 116 R 116 (133)
T ss_pred c
Confidence 3
No 143
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.29 E-value=1.4e-11 Score=84.50 Aligned_cols=69 Identities=25% Similarity=0.430 Sum_probs=58.2
Q ss_pred EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC---CCCceEEecccc
Q psy6192 4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT---DEPEWFYLTKHT 77 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~---~~~~w~~L~~~~ 77 (174)
.+|++++++.||.|||+|.|. +. ....|.|.|||++..+.+++||.+.++|+++... ....|++|.+.+
T Consensus 49 ~kT~~~~~t~~P~Wne~f~~~-v~----~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~G 120 (132)
T cd04014 49 GKTSTKPKTNSPVWNEEFTTE-VH----NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEPQG 120 (132)
T ss_pred eEEeEcCCCCCCCcceeEEEE-cC----CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccCCc
Confidence 589999999999999999998 75 2367999999999988999999999999987752 345599998653
No 144
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.29 E-value=1.1e-11 Score=84.39 Aligned_cols=60 Identities=20% Similarity=0.381 Sum_probs=50.9
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 146 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~ 146 (174)
++||++++++.||+|||+|.|. ..... ....|.|+|||++..+++++||++.+++.....
T Consensus 60 ~~kT~vi~~t~nPvWNE~F~f~-~~~~~-~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 60 EKRTEVIWNNNNPRWNATFDFG-SVELS-PGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred cccCceecCCCCCcCCCEEEEe-cccCC-CCCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 5899999999999999999996 42222 347899999999999999999999999986553
No 145
>KOG1028|consensus
Probab=99.28 E-value=5.9e-12 Score=101.63 Aligned_cols=73 Identities=25% Similarity=0.471 Sum_probs=67.3
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeecccC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L~~~ 158 (174)
+.+|++.++|+||+|||+|.|. ++..++....|.++|||+|.++++++||++.+++..+.... ...|.+|++.
T Consensus 203 k~kT~v~r~tlnP~fnEtf~f~-v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~ 276 (421)
T KOG1028|consen 203 KFKTRVHRKTLNPVFNETFRFE-VPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPS 276 (421)
T ss_pred cceeeeeecCcCCccccceEee-cCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccc
Confidence 6799999999999999999999 99999999999999999999999999999999998887664 5679999983
No 146
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.28 E-value=1.1e-11 Score=83.90 Aligned_cols=66 Identities=32% Similarity=0.497 Sum_probs=55.0
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCC
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP 68 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~ 68 (174)
.++||++++++.||.|||+|.|..+..+++....|.|.|||++.. .+++||.+.++++++..+...
T Consensus 52 ~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~ 117 (123)
T cd04035 52 TKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTK 117 (123)
T ss_pred CceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcce
Confidence 357999999999999999999953555555567899999999988 889999999999988765443
No 147
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.28 E-value=9.4e-12 Score=85.54 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=54.3
Q ss_pred CCccccccCCCCCccccEEEeCccccCC--CCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSD--LKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 148 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~--~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~ 148 (174)
+++|+++++|+||+|||.|.|. +...+ .....|.|+|||++..+++++||++.++++++..-+
T Consensus 56 ~~kT~v~~~t~nP~wnE~f~f~-i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~ 120 (133)
T cd04009 56 TPKTQVKKKTLFPLFDESFEFN-VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVE 120 (133)
T ss_pred ccccccCcCCCCCccCCEEEEE-echhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCccc
Confidence 5799999999999999999998 76532 345789999999999988999999999999987443
No 148
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.28 E-value=1.4e-11 Score=86.41 Aligned_cols=63 Identities=27% Similarity=0.595 Sum_probs=53.8
Q ss_pred EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEe
Q psy6192 4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL 73 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L 73 (174)
++|+++++++||.|||+|.|. +.. +....|.|.|||++ +++||.+.++++++.......||+|
T Consensus 91 ~kT~v~~~tlnP~WnE~F~f~-v~~--~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L 153 (153)
T cd08676 91 KVTEVKPQTLNPVWNETFRFE-VED--VSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL 153 (153)
T ss_pred EecceecCCCCCccccEEEEE-ecc--CCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence 689999999999999999997 643 23468999999998 8999999999999885556679986
No 149
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.27 E-value=1.2e-11 Score=86.11 Aligned_cols=63 Identities=17% Similarity=0.411 Sum_probs=54.0
Q ss_pred CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC
Q psy6192 1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE 67 (174)
Q Consensus 1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~ 67 (174)
++++||++++++.||.|||+|.|. +... ...|.|.|||++.++.+++||.+.+++..+.....
T Consensus 32 ~~~~kT~vvk~t~nP~WnE~f~f~-i~~~---~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 32 NQKVKTRVIKKNLNPVWNEELTLS-VPNP---MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAK 94 (145)
T ss_pred CEEEEeeeEcCCCCCeecccEEEE-ecCC---CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhh
Confidence 356899999999999999999997 6543 46799999999999999999999999988765433
No 150
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.27 E-value=2.1e-12 Score=88.62 Aligned_cols=72 Identities=24% Similarity=0.347 Sum_probs=60.8
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 76 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~ 76 (174)
+++|++++++.||.|||+|.|. ++...+....|.|.|||.+..+.+++||.+.++++. .......|++|...
T Consensus 52 ~~~T~~~~~~~~P~wne~f~f~-i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~-~~~~~~~W~~l~~~ 123 (134)
T cd00276 52 KKKTSVKKGTLNPVFNEAFSFD-VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS-GGEELEHWNEMLAS 123 (134)
T ss_pred eecCcceecCCCCeeeeeEEEE-CCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC-CCcHHHHHHHHHhC
Confidence 5689999999999999999998 887776667899999999998899999999999998 33334458887544
No 151
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.27 E-value=1.5e-11 Score=83.12 Aligned_cols=71 Identities=25% Similarity=0.448 Sum_probs=60.0
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEecccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHT 77 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~~ 77 (174)
+++|++++++.||.|||+|.|. +... ...|.|.|||++..+++++||++.+++.++.......||.|.+..
T Consensus 35 ~~kT~~~~~t~~P~Wne~f~~~-v~~~---~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~~~~~~~~~~~~~ 105 (120)
T cd04045 35 KGRTVTISNTLNPVWDEVLYVP-VTSP---NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKKNEDGKYVEYDDE 105 (120)
T ss_pred eeceeEECCCcCCccCceEEEE-ecCC---CCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCCCCCceEEecCCC
Confidence 4789999999999999999886 5443 257999999999999999999999999998877666688886553
No 152
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.26 E-value=1.8e-11 Score=82.77 Aligned_cols=68 Identities=18% Similarity=0.306 Sum_probs=57.3
Q ss_pred EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC--CCceEEecc
Q psy6192 4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD--EPEWFYLTK 75 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~--~~~w~~L~~ 75 (174)
.||+++++++||.|||.|.|. +... ...|.|.|||++.++++++||.+.+.+..+.... ...|++|.+
T Consensus 35 ~kT~v~~~t~nP~Wne~f~~~-~~~~---~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~ 104 (121)
T cd04054 35 IRTATVWKTLNPFWGEEYTVH-LPPG---FHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTE 104 (121)
T ss_pred eeeeeEcCCCCCcccceEEEe-eCCC---CCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECee
Confidence 599999999999999999997 6533 2579999999999999999999999988776432 456999975
No 153
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.26 E-value=1.9e-11 Score=82.19 Aligned_cols=69 Identities=33% Similarity=0.611 Sum_probs=58.7
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccCC
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHK 159 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~~ 159 (174)
++|++++++.||.|||+|.|. +.. + ...+.|+|||.+..+++++||++.+++.++.. +..+||.|.+..
T Consensus 35 ~~T~~~~~t~nP~W~e~f~~~-~~~--~-~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~-~~~~~~~l~~~~ 103 (119)
T cd08377 35 LQTHTIYKTLNPEWNKIFTFP-IKD--I-HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKN-GERKWYALKDKK 103 (119)
T ss_pred eecceecCCcCCccCcEEEEE-ecC--c-CCEEEEEEEECCCCCCCceeeEEEEEHHHCCC-CCceEEECcccC
Confidence 689999999999999999998 643 2 37899999999988899999999999988754 456899998743
No 154
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.26 E-value=2.8e-11 Score=80.93 Aligned_cols=71 Identities=28% Similarity=0.418 Sum_probs=59.2
Q ss_pred EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEecccc
Q psy6192 4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTKHT 77 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~~~ 77 (174)
++|+++.++.||.|||+|.|. +... ....|.|.|||++..+.+++||++.+++.++..... ..|++|.+.+
T Consensus 34 ~~T~v~~~~~~P~Wne~f~~~-~~~~--~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g 105 (115)
T cd04040 34 FKTKTIKKTLNPVWNESFEVP-VPSR--VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQG 105 (115)
T ss_pred eeeceecCCCCCcccccEEEE-eccC--CCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCC
Confidence 689999999999999999997 6543 346899999999999999999999999998765433 4499987654
No 155
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.26 E-value=2.7e-11 Score=85.61 Aligned_cols=68 Identities=22% Similarity=0.426 Sum_probs=57.5
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH 158 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~ 158 (174)
.+|++++++.||+|||.|.|. +... . ..|.|+|||.+.++ +++||++.++++++..+ ..++|++|.+.
T Consensus 72 ~rT~v~~~~~nP~WnE~F~~~-~~~~--~-~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~ 140 (158)
T cd04015 72 ARTRVIENSENPVWNESFHIY-CAHY--A-SHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS 140 (158)
T ss_pred eEEEEeCCCCCCccceEEEEE-ccCC--C-CEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC
Confidence 589999999999999999998 6533 2 57999999998774 68999999999998766 45799999774
No 156
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.26 E-value=1.1e-11 Score=85.55 Aligned_cols=59 Identities=31% Similarity=0.544 Sum_probs=52.2
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 146 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~ 146 (174)
+++|++++++.||.|||.|.|. +.. .....|.|+|||.+.++++++||++.+++.++..
T Consensus 48 ~~kT~vi~~t~nP~Wne~f~f~-v~~--~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 48 EHKTKVVSDTLNPKWNSSMQFF-VKD--LEQDVLCITVFDRDFFSPDDFLGRTEIRVADILK 106 (136)
T ss_pred eeeccccCCCCCCccCceEEEE-ecC--ccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhcc
Confidence 4799999999999999999998 643 3346899999999999899999999999999876
No 157
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.26 E-value=1.5e-11 Score=82.24 Aligned_cols=72 Identities=28% Similarity=0.415 Sum_probs=61.6
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCCC
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHKN 160 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~~ 160 (174)
++|+++.++.+|.|||+|.|. +... ....+.|.|||.+..+++++||++.+++.++..+ ....|++|.+.+.
T Consensus 34 ~~T~v~~~~~~P~Wne~f~~~-~~~~--~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~ 106 (115)
T cd04040 34 FKTKTIKKTLNPVWNESFEVP-VPSR--VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGG 106 (115)
T ss_pred eeeceecCCCCCcccccEEEE-eccC--CCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCC
Confidence 689999999999999999998 6543 3478999999999888999999999999998766 4568999988544
No 158
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.24 E-value=3.9e-11 Score=82.69 Aligned_cols=76 Identities=17% Similarity=0.423 Sum_probs=54.8
Q ss_pred CceEeceeecCCCCCccCceEEcCCcCc----CcC--CcceEEEEEEeCCCCCCCceEEEEEEe-cccccC----CCCCc
Q psy6192 1 GFKEFAKTLANTNDPKWNQSFFYPGIRR----SDL--KLRSIEITVWDYTRYGVNDFLGEVIIE-LSSSLC----TDEPE 69 (174)
Q Consensus 1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~----~~~--~~~~L~i~v~d~~~~~~~~~lG~~~~~-l~~~~~----~~~~~ 69 (174)
++++||+++++|+||.|||+|.|..... +.+ ....|.|.|||++..+++++||++.+. +..+.. .....
T Consensus 32 ~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~ 111 (135)
T cd04017 32 NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQ 111 (135)
T ss_pred CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCce
Confidence 3578999999999999999999862221 111 124689999999999999999999873 332222 23446
Q ss_pred eEEeccc
Q psy6192 70 WFYLTKH 76 (174)
Q Consensus 70 w~~L~~~ 76 (174)
|++|...
T Consensus 112 W~~L~~~ 118 (135)
T cd04017 112 WFPIYKG 118 (135)
T ss_pred EEEeecC
Confidence 9999643
No 159
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.24 E-value=2.2e-11 Score=81.22 Aligned_cols=54 Identities=20% Similarity=0.469 Sum_probs=45.8
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeC-------CCCCCCceEEEEEEeccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDY-------TRYGVNDFLGEVIIELSS 61 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~-------~~~~~~~~lG~~~~~l~~ 61 (174)
+.||+++++|+||+|||+|.|. +. . ...|++.|||+ +..+.|+++|.+.+.|..
T Consensus 32 ~~KTk~i~~TlnPvWnE~F~i~-l~--~--s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 32 KAKTRVCRDTTEPNWNEEFEIE-LE--G--SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred eeeeeeecCCCCCccceEEEEE-eC--C--CCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 5799999999999999999998 65 2 45899999998 466889999888887753
No 160
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.24 E-value=2.6e-11 Score=82.67 Aligned_cols=71 Identities=30% Similarity=0.613 Sum_probs=57.6
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCC-----------CCCceeEEEEEeCCcCCCCCcCcee
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY-----------GVNDFLGEVIIELSSSLCTDEPEWF 153 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~-----------~~~~~iG~~~l~l~~~~~~~~~~W~ 153 (174)
+++|++++++.||+|||.|.|. +... ...|.|.|||++.. +.+++||++.+++.++. .....||
T Consensus 34 ~~kT~~v~~t~~P~Wne~f~f~-~~~~---~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~-~~~~~w~ 108 (127)
T cd04027 34 KKRTKTIPQNLNPVWNEKFHFE-CHNS---SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS-GEMDVWY 108 (127)
T ss_pred eeecceecCCCCCccceEEEEE-ecCC---CCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc-CCCCeEE
Confidence 3689999999999999999997 5432 25799999998752 46899999999998864 4556999
Q ss_pred ecccCCC
Q psy6192 154 YLTKHKN 160 (174)
Q Consensus 154 ~L~~~~~ 160 (174)
.|.+...
T Consensus 109 ~L~~~~~ 115 (127)
T cd04027 109 NLEKRTD 115 (127)
T ss_pred ECccCCC
Confidence 9998654
No 161
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.24 E-value=1.7e-11 Score=84.57 Aligned_cols=60 Identities=30% Similarity=0.510 Sum_probs=52.2
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 64 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~ 64 (174)
+++||++++++.||.|||+|.|. +.. .....|.|.|||++.++.+++||.+.+++.++..
T Consensus 47 ~~~kT~vi~~t~nP~Wne~f~f~-v~~--~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 47 QEHKTKVVSDTLNPKWNSSMQFF-VKD--LEQDVLCITVFDRDFFSPDDFLGRTEIRVADILK 106 (136)
T ss_pred EeeeccccCCCCCCccCceEEEE-ecC--ccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhcc
Confidence 46799999999999999999997 643 2346899999999999999999999999988765
No 162
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.24 E-value=3.9e-11 Score=82.77 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=55.4
Q ss_pred ceEeceeecCCCCCcc-CceEEcCCcCcCcCCcceEEEEEEeCCCCCC---CceEEEEEEecccccCCCC----CceEEe
Q psy6192 2 FKEFAKTLANTNDPKW-NQSFFYPGIRRSDLKLRSIEITVWDYTRYGV---NDFLGEVIIELSSSLCTDE----PEWFYL 73 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w-~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~---~~~lG~~~~~l~~~~~~~~----~~w~~L 73 (174)
+++||+++++++||+| ||+|.|. +..+ ..|.|+|||++..++ +++||++.++++++...+. ..|+.|
T Consensus 45 ~~~kT~v~~~tlnP~W~nE~f~f~-v~~~----~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l 119 (137)
T cd08691 45 QECRTSIVENTINPVWHREQFVFV-GLPT----DVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTL 119 (137)
T ss_pred ceeeeeeEcCCCCCceEceEEEEE-cCCC----CEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEEC
Confidence 4689999999999999 9999997 6432 479999999875444 7999999999998865532 237777
Q ss_pred ccc
Q psy6192 74 TKH 76 (174)
Q Consensus 74 ~~~ 76 (174)
...
T Consensus 120 ~k~ 122 (137)
T cd08691 120 GRR 122 (137)
T ss_pred CcC
Confidence 644
No 163
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.23 E-value=4.5e-11 Score=80.40 Aligned_cols=70 Identities=31% Similarity=0.575 Sum_probs=57.7
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 76 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~ 76 (174)
.+.+|++++++.||.|||+|.|. +.. + ...|.|.|||++..+.+++||.+.+++.++... ...|+.|.+.
T Consensus 33 ~~~~T~~~~~t~nP~W~e~f~~~-~~~--~-~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~-~~~~~~l~~~ 102 (119)
T cd08377 33 ARLQTHTIYKTLNPEWNKIFTFP-IKD--I-HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNG-ERKWYALKDK 102 (119)
T ss_pred EeeecceecCCcCCccCcEEEEE-ecC--c-CCEEEEEEEECCCCCCCceeeEEEEEHHHCCCC-CceEEECccc
Confidence 35699999999999999999997 542 2 367999999999988999999999999887543 3469998654
No 164
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.23 E-value=4.1e-11 Score=82.55 Aligned_cols=79 Identities=18% Similarity=0.402 Sum_probs=57.4
Q ss_pred CCccccccCCCCCccccEEEeCcccc-----CCC--CcceEEEEEEeCCCCCCCceeEEEEEeC-CcCCC----CCcCce
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRR-----SDL--KLRSIEITVWDYTRYGVNDFLGEVIIEL-SSSLC----TDEPEW 152 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~-----~~~--~~~~l~i~v~d~~~~~~~~~iG~~~l~l-~~~~~----~~~~~W 152 (174)
+++|++++++.||.|||.|.|. +.. .++ ....|.|+|||.+..+++++||++.+.. ..+.. ....+|
T Consensus 34 ~~kT~v~~~t~nP~Wne~~~f~-~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W 112 (135)
T cd04017 34 SQETEVIKETLSPTWDQTLIFD-EVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQW 112 (135)
T ss_pred eeEeeeEcCCCCCccCcEEEEe-eeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceE
Confidence 4799999999999999999997 321 111 1256899999999999999999998742 22222 245699
Q ss_pred eecccCC-CCCCC
Q psy6192 153 FYLTKHK-NSGSN 164 (174)
Q Consensus 153 ~~L~~~~-~~~~~ 164 (174)
++|...+ ..|.+
T Consensus 113 ~~L~~~~~~~Gei 125 (135)
T cd04017 113 FPIYKGGQSAGEL 125 (135)
T ss_pred EEeecCCCchhhe
Confidence 9998644 33444
No 165
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.22 E-value=2.8e-11 Score=82.03 Aligned_cols=62 Identities=32% Similarity=0.532 Sum_probs=53.0
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~ 147 (174)
+++|++++++.||+|||.|.|..+...++....+.|+|||.+.. ++++||++.++++++..+
T Consensus 53 ~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 53 KLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred ceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCC
Confidence 47999999999999999999952444555567899999999988 899999999999988765
No 166
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.22 E-value=2.5e-11 Score=80.87 Aligned_cols=68 Identities=24% Similarity=0.380 Sum_probs=56.4
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC--CCCceEEec
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT--DEPEWFYLT 74 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~--~~~~w~~L~ 74 (174)
.++|++++++.||.|||+|.|. +... ....|.|.|||++.+ .+++||.+.++|+++... ....|++|.
T Consensus 26 ~~kT~v~~~t~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~~~~w~~L~ 95 (111)
T cd04052 26 VYTTRVKKKTNNPSWNASTEFL-VTDR--RKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSVGQQWFPLS 95 (111)
T ss_pred EEEEeeeccCCCCccCCceEEE-ecCc--CCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhccceeEECC
Confidence 3689999999999999999997 6433 356799999999998 899999999999987533 235699997
No 167
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.22 E-value=5.9e-11 Score=80.83 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=54.0
Q ss_pred CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEec
Q psy6192 1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT 74 (174)
Q Consensus 1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~ 74 (174)
+++.||++++++.||.|||.|.|. +... ...|.|.|||++..+ +++||.+++.+.... .....|++|.
T Consensus 34 ~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~i~V~d~~~~~-d~~lG~~~~~l~~~~-~~~~~~~~l~ 101 (126)
T cd04046 34 GESVRSPVQKDTLSPEFDTQAIFY-RKKP---RSPIKIQVWNSNLLC-DEFLGQATLSADPND-SQTLRTLPLR 101 (126)
T ss_pred CEEEEeCccCCCCCCcccceEEEE-ecCC---CCEEEEEEEECCCCC-CCceEEEEEecccCC-CcCceEEEcc
Confidence 356899999999999999999996 5432 467999999999875 799999999998643 3334566664
No 168
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.22 E-value=1.9e-11 Score=85.18 Aligned_cols=60 Identities=17% Similarity=0.429 Sum_probs=52.9
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 148 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~ 148 (174)
+++|++++++.||+|||.|.|. +... ...|.|+|||++.++++++||++.+++..+....
T Consensus 34 ~~kT~vvk~t~nP~WnE~f~f~-i~~~---~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 34 KVKTRVIKKNLNPVWNEELTLS-VPNP---MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred EEEeeeEcCCCCCeecccEEEE-ecCC---CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhh
Confidence 4799999999999999999998 7644 4789999999999999999999999999876553
No 169
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.21 E-value=4e-11 Score=80.35 Aligned_cols=70 Identities=20% Similarity=0.326 Sum_probs=56.1
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 158 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~ 158 (174)
++|+++++ .||.|||+|.|. ++..++....|.|.+||.+....+.++|.+.|+.... ....++||+|.+.
T Consensus 32 ~kT~~~~~-~~P~Wne~f~f~-v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~~-~~~~~~w~~L~~~ 101 (117)
T cd08383 32 ARTKTVEK-LNPFWGEEFVFD-DPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKLDL-GQGKDEWFPLTPV 101 (117)
T ss_pred EecceEEC-CCCcccceEEEe-cCCccccEEEEEEEEEecccCCCeeEEEEEEecCcCC-CCcceeEEECccC
Confidence 68999888 999999999998 8776666678899999988776777888887766543 2356799999884
No 170
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.21 E-value=3.8e-11 Score=82.82 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=58.2
Q ss_pred CCccccccCCCCCcc-ccEEEeCccccCCCCcceEEEEEEeCCCCCC---CceeEEEEEeCCcCCCCC----cCceeecc
Q psy6192 85 SNLSKTLANTNDPKW-NQSFFYPGIRRSDLKLRSIEITVWDYTRYGV---NDFLGEVIIELSSSLCTD----EPEWFYLT 156 (174)
Q Consensus 85 ~~kT~~~~~t~~P~w-ne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~---~~~iG~~~l~l~~~~~~~----~~~W~~L~ 156 (174)
+++|+++++++||+| ||.|.|. +.. +..|.|+|||++..++ +++||++.+++.++.... ...||+|.
T Consensus 46 ~~kT~v~~~tlnP~W~nE~f~f~-v~~----~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~ 120 (137)
T cd08691 46 ECRTSIVENTINPVWHREQFVFV-GLP----TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLG 120 (137)
T ss_pred eeeeeeEcCCCCCceEceEEEEE-cCC----CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECC
Confidence 479999999999999 9999998 643 2579999999765433 789999999999987552 45799998
Q ss_pred cCCCC
Q psy6192 157 KHKNS 161 (174)
Q Consensus 157 ~~~~~ 161 (174)
..+..
T Consensus 121 k~~~~ 125 (137)
T cd08691 121 RRTPT 125 (137)
T ss_pred cCCCC
Confidence 65543
No 171
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.21 E-value=3.8e-11 Score=81.51 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=59.5
Q ss_pred ceEeceeec-CCCCCccCceEEcCCcCcCcC--CcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC------CceEE
Q psy6192 2 FKEFAKTLA-NTNDPKWNQSFFYPGIRRSDL--KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE------PEWFY 72 (174)
Q Consensus 2 ~k~rT~~~~-~t~nP~w~E~f~f~~v~~~~~--~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~------~~w~~ 72 (174)
++++|++.. ++.||.|||+|.|. +....+ ....|.|.|||++.++.+++||++.+++.++..... ..||+
T Consensus 33 ~~~~T~~~~~~~~~P~Wne~f~f~-v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~ 111 (125)
T cd04051 33 HKQSTPVDRDGGTNPTWNETLRFP-LDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQ 111 (125)
T ss_pred cccccccccCCCCCCCCCCEEEEE-cChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEE
Confidence 467888875 58999999999998 765532 246799999999998899999999999998775543 34898
Q ss_pred eccc
Q psy6192 73 LTKH 76 (174)
Q Consensus 73 L~~~ 76 (174)
|...
T Consensus 112 l~~~ 115 (125)
T cd04051 112 LRRP 115 (125)
T ss_pred eECC
Confidence 8754
No 172
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.21 E-value=3.7e-11 Score=81.60 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=60.0
Q ss_pred CCcccccc-CCCCCccccEEEeCccccCCC--CcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCc------Cceeec
Q psy6192 85 SNLSKTLA-NTNDPKWNQSFFYPGIRRSDL--KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE------PEWFYL 155 (174)
Q Consensus 85 ~~kT~~~~-~t~~P~wne~~~f~~~~~~~~--~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~------~~W~~L 155 (174)
+++|++.+ .+.||.|||.|.|. +....+ ....|.|+|||.+.++++++||++.+++.++..... ..||.|
T Consensus 34 ~~~T~~~~~~~~~P~Wne~f~f~-v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l 112 (125)
T cd04051 34 KQSTPVDRDGGTNPTWNETLRFP-LDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQL 112 (125)
T ss_pred ccccccccCCCCCCCCCCEEEEE-cChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEe
Confidence 47888875 58999999999998 765532 237899999999988899999999999999886632 589999
Q ss_pred ccC
Q psy6192 156 TKH 158 (174)
Q Consensus 156 ~~~ 158 (174)
...
T Consensus 113 ~~~ 115 (125)
T cd04051 113 RRP 115 (125)
T ss_pred ECC
Confidence 863
No 173
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.20 E-value=5.7e-11 Score=81.01 Aligned_cols=70 Identities=31% Similarity=0.608 Sum_probs=56.1
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCC-----------CCCceEEEEEEecccccCCCCCce
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY-----------GVNDFLGEVIIELSSSLCTDEPEW 70 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~-----------~~~~~lG~~~~~l~~~~~~~~~~w 70 (174)
++++|+++++++||.|||+|.|. +... ...|.|.|||++.. +.+++||.+.+++.++. .....|
T Consensus 33 ~~~kT~~v~~t~~P~Wne~f~f~-~~~~---~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~-~~~~~w 107 (127)
T cd04027 33 TKKRTKTIPQNLNPVWNEKFHFE-CHNS---SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS-GEMDVW 107 (127)
T ss_pred EeeecceecCCCCCccceEEEEE-ecCC---CCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc-CCCCeE
Confidence 45789999999999999999997 5322 35799999999853 46899999999998764 345579
Q ss_pred EEeccc
Q psy6192 71 FYLTKH 76 (174)
Q Consensus 71 ~~L~~~ 76 (174)
+.|.+.
T Consensus 108 ~~L~~~ 113 (127)
T cd04027 108 YNLEKR 113 (127)
T ss_pred EECccC
Confidence 999764
No 174
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.18 E-value=1.3e-10 Score=79.06 Aligned_cols=66 Identities=18% Similarity=0.338 Sum_probs=55.0
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK 157 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~ 157 (174)
++|++++++.||+|||.|.|. +... ...|.|+|||.+.. ++++||.+.++++++ .....+|++|+.
T Consensus 37 ~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~i~V~d~~~~-~d~~lG~~~~~l~~~-~~~~~~~~~l~~ 102 (126)
T cd04046 37 VRSPVQKDTLSPEFDTQAIFY-RKKP---RSPIKIQVWNSNLL-CDEFLGQATLSADPN-DSQTLRTLPLRK 102 (126)
T ss_pred EEeCccCCCCCCcccceEEEE-ecCC---CCEEEEEEEECCCC-CCCceEEEEEecccC-CCcCceEEEccc
Confidence 699999999999999999997 5432 37899999998876 589999999999875 345568899964
No 175
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.18 E-value=4.9e-11 Score=80.99 Aligned_cols=58 Identities=24% Similarity=0.442 Sum_probs=49.1
Q ss_pred EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192 4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 64 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~ 64 (174)
.||+++++++||.|||+|.|. +.... ...|.|.|||++..+++++||++.++++....
T Consensus 36 ~kT~~v~~t~nP~Wne~f~f~-~~~~~--~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 36 DRDNYIPNTLNPVFGKMFELE-ATLPG--NSILKISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred ceeeEEECCCCCccceEEEEE-ecCCC--CCEEEEEEEECCCCCCCceeEEEEEeeccccc
Confidence 478888999999999999997 54332 46899999999999999999999999986553
No 176
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.17 E-value=9e-11 Score=79.70 Aligned_cols=58 Identities=24% Similarity=0.443 Sum_probs=49.6
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCC
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 146 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~ 146 (174)
.+|++++++.||+|||.|.|. +... ....|.|+|||.+..+++++||++.+++++...
T Consensus 36 ~kT~~v~~t~nP~Wne~f~f~-~~~~--~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 36 DRDNYIPNTLNPVFGKMFELE-ATLP--GNSILKISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred ceeeEEECCCCCccceEEEEE-ecCC--CCCEEEEEEEECCCCCCCceeEEEEEeeccccc
Confidence 678888899999999999997 5432 246899999999999999999999999987654
No 177
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.17 E-value=1.1e-10 Score=79.33 Aligned_cols=67 Identities=24% Similarity=0.423 Sum_probs=55.3
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC---C---ceEEec
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE---P---EWFYLT 74 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~---~---~w~~L~ 74 (174)
+++|+++++++||.|||+|.|. +.. ...|.|.|||++..+.+++||++.++|+++...+. . .|++|.
T Consensus 35 ~~kT~v~~~t~~P~Wne~f~~~-~~~----~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~ 107 (125)
T cd04021 35 PKKTEVSKKTSNPKWNEHFTVL-VTP----QSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLS 107 (125)
T ss_pred cEEeeeeCCCCCCccccEEEEE-eCC----CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEE
Confidence 6799999999999999999997 642 35799999999999999999999999988764322 1 277775
No 178
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.16 E-value=5.7e-11 Score=81.18 Aligned_cols=64 Identities=20% Similarity=0.357 Sum_probs=56.6
Q ss_pred CCCccccccCCCC--CccccEEEeCcccc---------------------CCCCcceEEEEEEeCCCCCCCceeEEEEEe
Q psy6192 84 LSNLSKTLANTND--PKWNQSFFYPGIRR---------------------SDLKLRSIEITVWDYTRYGVNDFLGEVIIE 140 (174)
Q Consensus 84 ~~~kT~~~~~t~~--P~wne~~~f~~~~~---------------------~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~ 140 (174)
.+++|.+.++++| |.||+.|.|+ +.. +.+....|.++|||.|.++++++||.++|+
T Consensus 39 ~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~ 117 (133)
T cd08374 39 DKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELD 117 (133)
T ss_pred cccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEE
Confidence 3689999999999 9999999998 765 456678999999999999999999999999
Q ss_pred CCcCCCCC
Q psy6192 141 LSSSLCTD 148 (174)
Q Consensus 141 l~~~~~~~ 148 (174)
+..+....
T Consensus 118 l~~l~~~~ 125 (133)
T cd08374 118 LSILPRPA 125 (133)
T ss_pred hhhccccc
Confidence 99887653
No 179
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.16 E-value=1.5e-10 Score=81.81 Aligned_cols=68 Identities=22% Similarity=0.430 Sum_probs=55.6
Q ss_pred EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192 4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH 76 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~ 76 (174)
.||++++++.||.|||+|.|. +... ...|.|.|||++.++ +++||.+.++++.+.... ...|++|.+.
T Consensus 72 ~rT~v~~~~~nP~WnE~F~~~-~~~~---~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~ 140 (158)
T cd04015 72 ARTRVIENSENPVWNESFHIY-CAHY---ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS 140 (158)
T ss_pred eEEEEeCCCCCCccceEEEEE-ccCC---CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC
Confidence 589999999999999999997 6432 257999999999876 589999999999876544 3459999654
No 180
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.15 E-value=6.6e-11 Score=80.08 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=60.2
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCc-C-ceeecccCC-CC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-P-EWFYLTKHK-NS 161 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~-~-~W~~L~~~~-~~ 161 (174)
.++|++++++.||.|||.|.|. +.. ....|.|+|||.+..+++++||++.+++.++...+. . .|+.|...+ ..
T Consensus 38 ~~kT~~~~~~~~P~Wne~~~~~-v~~---~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~ 113 (124)
T cd04044 38 LARTKVKKDTSNPVWNETKYIL-VNS---LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPV 113 (124)
T ss_pred ceEeeeecCCCCCcceEEEEEE-eCC---CCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCccc
Confidence 4799999999999999999998 662 247899999999998899999999999999887643 3 345554432 23
Q ss_pred CCCC
Q psy6192 162 GSNP 165 (174)
Q Consensus 162 ~~~~ 165 (174)
|.+.
T Consensus 114 G~i~ 117 (124)
T cd04044 114 GELN 117 (124)
T ss_pred eEEE
Confidence 5443
No 181
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.14 E-value=1.2e-10 Score=80.93 Aligned_cols=70 Identities=13% Similarity=0.264 Sum_probs=56.0
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCC-C---CCCceeEEEEEeCCcCCCC-CcCceeecccCC
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTR-Y---GVNDFLGEVIIELSSSLCT-DEPEWFYLTKHK 159 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~-~---~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~ 159 (174)
.||+++.++.||.|+|.|.|. ..+. . ..+.|.||+.+. . .++.+||.+.|+++++..+ ..+.||+|.+..
T Consensus 41 aRT~v~~~~~nP~W~E~F~f~-~~~~--~-~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~ 115 (146)
T cd04013 41 ARTTSKLKTDTLFWGEHFEFS-NLPP--V-SVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPK 115 (146)
T ss_pred EEEEEEcCCCCCcceeeEEec-CCCc--c-cEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCC
Confidence 489999999999999999998 4433 2 569999975432 2 2578999999999999866 467999999843
No 182
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.13 E-value=1.3e-10 Score=78.65 Aligned_cols=62 Identities=23% Similarity=0.405 Sum_probs=53.6
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE 67 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~ 67 (174)
++.||+++.++.||.|||.|.|. +. . ....|.|.|||++..+.+++||.+.++++++.....
T Consensus 37 ~~~kT~~~~~~~~P~Wne~~~~~-v~--~-~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~ 98 (124)
T cd04044 37 ELARTKVKKDTSNPVWNETKYIL-VN--S-LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPE 98 (124)
T ss_pred cceEeeeecCCCCCcceEEEEEE-eC--C-CCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCcc
Confidence 46799999999999999999997 66 2 246899999999999999999999999998876544
No 183
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.12 E-value=2.9e-10 Score=76.15 Aligned_cols=71 Identities=20% Similarity=0.306 Sum_probs=54.0
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 76 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~ 76 (174)
.++|+++++ .||.|||+|.|. +...++....|.|.+||.+...++..+|.+.+..... ......|++|.+.
T Consensus 31 ~~kT~~~~~-~~P~Wne~f~f~-v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~~-~~~~~~w~~L~~~ 101 (117)
T cd08383 31 VARTKTVEK-LNPFWGEEFVFD-DPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKLDL-GQGKDEWFPLTPV 101 (117)
T ss_pred eEecceEEC-CCCcccceEEEe-cCCccccEEEEEEEEEecccCCCeeEEEEEEecCcCC-CCcceeEEECccC
Confidence 368999988 999999999998 8776655577889999988777777888776554333 2234559999764
No 184
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.11 E-value=1.2e-10 Score=79.57 Aligned_cols=63 Identities=22% Similarity=0.372 Sum_probs=55.5
Q ss_pred ceEeceeecCCCC--CccCceEEcCCcCc---------------------CcCCcceEEEEEEeCCCCCCCceEEEEEEe
Q psy6192 2 FKEFAKTLANTND--PKWNQSFFYPGIRR---------------------SDLKLRSIEITVWDYTRYGVNDFLGEVIIE 58 (174)
Q Consensus 2 ~k~rT~~~~~t~n--P~w~E~f~f~~v~~---------------------~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~ 58 (174)
.+++|.++.+++| |.||+.|.|+ +.. +.+...+|.+.|||.|.++++++||+++++
T Consensus 39 ~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~ 117 (133)
T cd08374 39 DKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELD 117 (133)
T ss_pred cccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEE
Confidence 4689999999999 9999999998 655 555667899999999999999999999999
Q ss_pred cccccCC
Q psy6192 59 LSSSLCT 65 (174)
Q Consensus 59 l~~~~~~ 65 (174)
|..+...
T Consensus 118 l~~l~~~ 124 (133)
T cd08374 118 LSILPRP 124 (133)
T ss_pred hhhcccc
Confidence 9877654
No 185
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.11 E-value=1.8e-10 Score=76.92 Aligned_cols=53 Identities=19% Similarity=0.460 Sum_probs=44.4
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeC-------CCCCCCceeEEEEEeCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDY-------TRYGVNDFLGEVIIELS 142 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~-------~~~~~~~~iG~~~l~l~ 142 (174)
+.||+++++|+||+|||.|.|. +.. ...|.+.|||+ +..+.+++||...+.++
T Consensus 32 ~~KTk~i~~TlnPvWnE~F~i~-l~~----s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 32 KAKTRVCRDTTEPNWNEEFEIE-LEG----SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred eeeeeeecCCCCCccceEEEEE-eCC----CCEEEEEEEEcccccccccccCcccEEEEEEEEEC
Confidence 4799999999999999999998 752 36899999997 46678999977777665
No 186
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.09 E-value=1.9e-10 Score=78.27 Aligned_cols=70 Identities=23% Similarity=0.425 Sum_probs=58.1
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC--c----CceeecccC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD--E----PEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~--~----~~W~~L~~~ 158 (174)
.++|++++++.||+|||.|.|. +.. ...|.|+|||.+..+.+++||++.+++.++.... . ..|+.|...
T Consensus 35 ~~kT~v~~~t~~P~Wne~f~~~-~~~----~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~ 109 (125)
T cd04021 35 PKKTEVSKKTSNPKWNEHFTVL-VTP----QSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSE 109 (125)
T ss_pred cEEeeeeCCCCCCccccEEEEE-eCC----CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEcc
Confidence 3799999999999999999998 643 3689999999999999999999999999987541 1 248888764
Q ss_pred C
Q psy6192 159 K 159 (174)
Q Consensus 159 ~ 159 (174)
+
T Consensus 110 ~ 110 (125)
T cd04021 110 N 110 (125)
T ss_pred C
Confidence 4
No 187
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.08 E-value=4.2e-10 Score=97.59 Aligned_cols=143 Identities=17% Similarity=0.295 Sum_probs=100.6
Q ss_pred EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCC---------------
Q psy6192 4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP--------------- 68 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~--------------- 68 (174)
-||+++++++||+|||+|... .+.+ ...|.++|||.+..+.|+++|...++|..+......
T Consensus 473 gkT~v~~nt~nPvwNEt~Yi~---lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vG 548 (1227)
T COG5038 473 GKTRVKKNTLNPVWNETFYIL---LNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVG 548 (1227)
T ss_pred CccceeeccCCccccceEEEE---eccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeeccCccce
Confidence 389999999999999998764 3344 367999999999999999999999999876554321
Q ss_pred ------ceEEecccc------------eE---ecc-----------C---------------CCCccccccCCCCCcccc
Q psy6192 69 ------EWFYLTKHT------------LE---LQF-----------P---------------LSNLSKTLANTNDPKWNQ 101 (174)
Q Consensus 69 ------~w~~L~~~~------------~~---l~~-----------p---------------~~~kT~~~~~t~~P~wne 101 (174)
.|++..... .+ +.. + ..+.|+.++.+.+|.||+
T Consensus 549 rL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~ 628 (1227)
T COG5038 549 RLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNL 628 (1227)
T ss_pred EEEEeeeeecccCCccccccccCCcccCCcceeEEEeeccccccCccccccceeEEEEecceEEeccceeeeccCCceee
Confidence 122211100 00 000 0 035567888999999999
Q ss_pred EEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCc--Cceeecc
Q psy6192 102 SFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE--PEWFYLT 156 (174)
Q Consensus 102 ~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~--~~W~~L~ 156 (174)
++.-. -.......+.+.+.|.. ..+.||....++.++..... ..||++.
T Consensus 629 ~~~~~---v~~~~ns~~~~~~~d~~---~g~~i~~~~~~l~~li~~t~dt~~~f~~~ 679 (1227)
T COG5038 629 QYNVL---VTDRKNSSIKVVTFDVQ---SGKVIATEGSTLPDLIDRTLDTFLVFPLR 679 (1227)
T ss_pred ecceE---eccCcceeEEEEecccc---cCceeccccccchHhhhccccceEEEEcC
Confidence 87744 44455688999998864 34578888888888766633 3788887
No 188
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.08 E-value=2e-10 Score=76.28 Aligned_cols=60 Identities=32% Similarity=0.507 Sum_probs=48.6
Q ss_pred eEeceeecCCCCCccCceEEcCC--cCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPG--IRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 64 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~--v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~ 64 (174)
+++|+++++++||.|| +|.|.. +...+. ...|.|+|||++..+++++||.+.++++.+..
T Consensus 39 ~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~-~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 39 VYRTEVIKNTLNPVWK-PFTIPLQKLCNGDY-DRPIKIEVYDYDSSGKHDLIGEFETTLDELLK 100 (110)
T ss_pred EEeeeEeccCCCCceE-EEEEEHHHhcCCCc-CCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhc
Confidence 4799999999999999 677651 112222 36899999999999999999999999998763
No 189
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.08 E-value=1.6e-10 Score=76.72 Aligned_cols=57 Identities=33% Similarity=0.580 Sum_probs=48.0
Q ss_pred CccccccCCCCCccccEEEeCccccCCCC----cceEEEEEEeCCCCCCCceeEEEEEeCCcCCC
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLK----LRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 146 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~----~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~ 146 (174)
++|++++++.||+|| .|.|. + ..+. ...|.|+|||++..+++++||++.++++++..
T Consensus 40 ~kT~vi~~t~nP~Wn-~f~~~-~--~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 40 YRTEVIKNTLNPVWK-PFTIP-L--QKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLK 100 (110)
T ss_pred EeeeEeccCCCCceE-EEEEE-H--HHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhc
Confidence 799999999999999 56665 3 2221 37899999999999999999999999999873
No 190
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.03 E-value=1.1e-09 Score=76.06 Aligned_cols=69 Identities=12% Similarity=0.283 Sum_probs=54.0
Q ss_pred eceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCC-C---CCceEEEEEEecccccCCC-CCceEEecccc
Q psy6192 5 FAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY-G---VNDFLGEVIIELSSSLCTD-EPEWFYLTKHT 77 (174)
Q Consensus 5 rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~-~---~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~~ 77 (174)
||+++.++.||.|+|.|.|. .... ...|.|.||+.+.. + .+.+||.+.+++..+.... ...||+|.+..
T Consensus 42 RT~v~~~~~nP~W~E~F~f~-~~~~---~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~ 115 (146)
T cd04013 42 RTTSKLKTDTLFWGEHFEFS-NLPP---VSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPK 115 (146)
T ss_pred EEEEEcCCCCCcceeeEEec-CCCc---ccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCC
Confidence 99999999999999999997 4333 24699999875532 2 5789999999999887554 34599997654
No 191
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=99.01 E-value=1.6e-10 Score=72.08 Aligned_cols=73 Identities=16% Similarity=0.323 Sum_probs=63.6
Q ss_pred eccCCCCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeec
Q psy6192 80 LQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL 155 (174)
Q Consensus 80 l~~p~~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L 155 (174)
+.-|...||++++...||+|+|+|+|. +...++.+.+|.++|+. ...++..||.+.++++++...+..||..+
T Consensus 31 l~kpv~~KsS~rrgs~d~~f~ETFVFq-i~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~geeE~~HW~e~ 103 (103)
T cd08684 31 LPKPVHFKSSAKEGSNDIEFMETFVFA-IKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTLSTQETDHWLEI 103 (103)
T ss_pred cCCCccccchhhcCCCChhHHHHHHHH-HHHhhccceEEEEEeec--cCCccceeeEEEeecccCCHHHhhhhhcC
Confidence 344567899999999999999999999 99999999999999988 55678899999999998877777889753
No 192
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.00 E-value=1.5e-09 Score=73.76 Aligned_cols=69 Identities=25% Similarity=0.379 Sum_probs=54.7
Q ss_pred ceEeceeecCCC-CCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192 2 FKEFAKTLANTN-DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 76 (174)
Q Consensus 2 ~k~rT~~~~~t~-nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~ 76 (174)
.++||+++.++. ||.|||+|.|. +.... ...|.|.|||.+.. ++++||.+.++++.+. ....|++|.+.
T Consensus 42 ~~~kT~~~~~~~~~P~w~e~f~f~-~~~~~--~~~l~~~V~d~~~~-~~~~iG~~~~~l~~l~--~g~~~~~l~~~ 111 (128)
T cd00275 42 AKFKTKVVKNNGFNPVWNETFEFD-VTVPE--LAFLRFVVYDEDSG-DDDFLGQACLPLDSLR--QGYRHVPLLDS 111 (128)
T ss_pred CcEeeeeecCCCcCCccCCcEEEE-EeCCC--eEEEEEEEEeCCCC-CCcEeEEEEEEhHHhc--CceEEEEecCC
Confidence 357899988776 99999999997 65433 34799999999988 8999999999999874 34457777543
No 193
>PLN03008 Phospholipase D delta
Probab=98.98 E-value=7.4e-10 Score=94.35 Aligned_cols=79 Identities=19% Similarity=0.392 Sum_probs=64.2
Q ss_pred ceEeccCC--CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCcee
Q psy6192 77 TLELQFPL--SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWF 153 (174)
Q Consensus 77 ~~~l~~p~--~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~ 153 (174)
-..+.++. +.||++++++.||+|||+|.|. ++.. ...|.|+|+|.+.++ +++||.+.|++.++..+ ..+.|+
T Consensus 80 YV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~-vah~---~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl 154 (868)
T PLN03008 80 YVTVVVPQATLARTRVLKNSQEPLWDEKFNIS-IAHP---FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWF 154 (868)
T ss_pred eEEEEECCcceeeEEeCCCCCCCCcceeEEEE-ecCC---CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEE
Confidence 34445554 3489999999999999999998 7653 268999999999986 58999999999998877 467999
Q ss_pred ecccCCC
Q psy6192 154 YLTKHKN 160 (174)
Q Consensus 154 ~L~~~~~ 160 (174)
+|....+
T Consensus 155 ~Ll~~~~ 161 (868)
T PLN03008 155 PVLGASG 161 (868)
T ss_pred EccccCC
Confidence 9988543
No 194
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=98.98 E-value=1.3e-09 Score=74.07 Aligned_cols=68 Identities=24% Similarity=0.394 Sum_probs=54.9
Q ss_pred CCccccccCCC-CCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC
Q psy6192 85 SNLSKTLANTN-DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 158 (174)
Q Consensus 85 ~~kT~~~~~t~-~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~ 158 (174)
+++|++++++. ||+|||+|.|. +...+ ...|.+.|||.+.. ++++||++.++++++. ....|++|.+.
T Consensus 43 ~~kT~~~~~~~~~P~w~e~f~f~-~~~~~--~~~l~~~V~d~~~~-~~~~iG~~~~~l~~l~--~g~~~~~l~~~ 111 (128)
T cd00275 43 KFKTKVVKNNGFNPVWNETFEFD-VTVPE--LAFLRFVVYDEDSG-DDDFLGQACLPLDSLR--QGYRHVPLLDS 111 (128)
T ss_pred cEeeeeecCCCcCCccCCcEEEE-EeCCC--eEEEEEEEEeCCCC-CCcEeEEEEEEhHHhc--CceEEEEecCC
Confidence 47888877775 99999999998 66443 25789999999887 8999999999999874 33478888763
No 195
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.95 E-value=6.5e-09 Score=90.41 Aligned_cols=67 Identities=24% Similarity=0.268 Sum_probs=57.0
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceee
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFY 154 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~ 154 (174)
.++|+++++|+||+|||.+... +.+.. ...+.|.|+|++...+++.||++.++|..+..++.+.|.-
T Consensus 1074 vyktkv~KktlNPvwNEe~~i~-v~~r~--~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i 1140 (1227)
T COG5038 1074 VYKTKVVKKTLNPVWNEEFTIE-VLNRV--KDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNI 1140 (1227)
T ss_pred cccccchhccCCCCccccceEe-eeccc--cceEEEEEeecccCCCccccccccccHhhcCcCCccceee
Confidence 5899999999999999999976 55443 4589999999999999999999999999998876655543
No 196
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.94 E-value=9.3e-10 Score=101.28 Aligned_cols=76 Identities=17% Similarity=0.391 Sum_probs=61.9
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCC-CCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHK-NSG 162 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~-~~~ 162 (174)
++||++++++.||+|||.|.|. +..+.. +..+.|+|||++.++ ++.||++.|++.++... ....||+|.+++ ..|
T Consensus 2012 ~~kTkvvk~~~nP~Wne~f~~~-~~~p~~-~~~l~iev~d~d~f~-kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G 2088 (2102)
T PLN03200 2012 PRQTKVVSHSSSPEWKEGFTWA-FDSPPK-GQKLHISCKSKNTFG-KSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDG 2088 (2102)
T ss_pred cccccccCCCCCCCcccceeee-ecCCCC-CCceEEEEEecCccC-CCCCceEEEEHHHHhcCceeeeeeecCcccccCC
Confidence 4789999999999999999976 544322 367999999999995 45899999999998866 567999999854 355
Q ss_pred C
Q psy6192 163 S 163 (174)
Q Consensus 163 ~ 163 (174)
.
T Consensus 2089 ~ 2089 (2102)
T PLN03200 2089 S 2089 (2102)
T ss_pred C
Confidence 5
No 197
>PLN03008 Phospholipase D delta
Probab=98.94 E-value=1.9e-09 Score=91.85 Aligned_cols=69 Identities=20% Similarity=0.425 Sum_probs=57.6
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCC-ceEEeccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP-EWFYLTKH 76 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~-~w~~L~~~ 76 (174)
..||++++++.||+|||+|.|. +... ...|.|.|||+|.++. ++||.+.+++.++...... .|++|...
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~-vah~---~s~L~f~VkD~D~~ga-D~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~ 159 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNIS-IAHP---FAYLEFQVKDDDVFGA-QIIGTAKIPVRDIASGERISGWFPVLGA 159 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEE-ecCC---CceEEEEEEcCCccCC-ceeEEEEEEHHHcCCCCceEEEEEcccc
Confidence 3589999999999999999998 7652 3579999999999975 8999999999998766543 59998653
No 198
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.84 E-value=3.8e-09 Score=97.40 Aligned_cols=71 Identities=15% Similarity=0.339 Sum_probs=56.6
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEecc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTK 75 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~ 75 (174)
.++||++++++.||.|||.|.|. +..... ...|.|+|||+|.+++ +.||.+.+++..+..... ..||+|.+
T Consensus 2011 ~~~kTkvvk~~~nP~Wne~f~~~-~~~p~~-~~~l~iev~d~d~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200 2011 PPRQTKVVSHSSSPEWKEGFTWA-FDSPPK-GQKLHISCKSKNTFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred CcccccccCCCCCCCcccceeee-ecCCCC-CCceEEEEEecCccCC-CCCceEEEEHHHHhcCceeeeeeecCc
Confidence 37899999999999999999865 333222 3569999999999955 599999999999876544 45999975
No 199
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=98.83 E-value=3.1e-09 Score=66.52 Aligned_cols=51 Identities=37% Similarity=0.775 Sum_probs=45.2
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEE
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVI 56 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~ 56 (174)
+++|++++++.+|.|+|+|.|. +...... .|.|.|||.+..+++++||++.
T Consensus 35 ~~~T~~~~~~~~P~w~e~~~~~-~~~~~~~--~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 35 KYKTKVKKNTSNPVWNEEFEFP-LDDPDLD--SLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEECCBSSBSSEEEEEEEEEE-ESHGCGT--EEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeeeeeccccceeeeeeeee-eeccccc--ceEEEEEECCCCCCCCEEEEEC
Confidence 5899999999999999999998 7776655 4999999999999999999973
No 200
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.81 E-value=1.2e-09 Score=68.26 Aligned_cols=66 Identities=14% Similarity=0.278 Sum_probs=58.0
Q ss_pred EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEE
Q psy6192 4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFY 72 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~ 72 (174)
.||+++++..||.|+|+|+|+ +....+.+-+|.|.|+. ...+.+.||.|++.++.+..++..+|.+
T Consensus 37 ~KsS~rrgs~d~~f~ETFVFq-i~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~geeE~~HW~e 102 (103)
T cd08684 37 FKSSAKEGSNDIEFMETFVFA-IKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTLSTQETDHWLE 102 (103)
T ss_pred ccchhhcCCCChhHHHHHHHH-HHHhhccceEEEEEeec--cCCccceeeEEEeecccCCHHHhhhhhc
Confidence 578999999999999999998 99999998999999988 5578899999999999887776666754
No 201
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.81 E-value=1.6e-08 Score=64.86 Aligned_cols=61 Identities=38% Similarity=0.671 Sum_probs=51.9
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 65 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~ 65 (174)
...+|+++.++.||.|||+|.|. +.... ...|.|.|||.+..+.+.++|.+.+++..+...
T Consensus 35 ~~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 35 EKKKTKVVKNTLNPVWNETFEFE-VPPPE--LAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred ceEeeeEecCCCCCcccceEEEE-ecCcc--cCEEEEEEEecCCccCCceeEEEEEEHHHcccC
Confidence 35789999999999999999998 65544 578999999999888899999999998876554
No 202
>KOG1328|consensus
Probab=98.80 E-value=1.9e-09 Score=89.79 Aligned_cols=77 Identities=23% Similarity=0.491 Sum_probs=64.6
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCC-----------------------------------
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG----------------------------------- 129 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~----------------------------------- 129 (174)
.+-|+++++|+||.|+|.|-|. + ++.....+.+.+||+|.-.
T Consensus 178 Ikatsvk~~TLnPkW~EkF~F~-I--eDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d 254 (1103)
T KOG1328|consen 178 IKATSVKKKTLNPKWSEKFQFT-I--EDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDD 254 (1103)
T ss_pred hhhcccccccCCcchhhheeee-h--hccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCc
Confidence 3568899999999999999998 4 4555678999999876421
Q ss_pred -CCceeEEEEEeCCcCCCCCcCceeecccCCCCCCC
Q psy6192 130 -VNDFLGEVIIELSSSLCTDEPEWFYLTKHKNSGSN 164 (174)
Q Consensus 130 -~~~~iG~~~l~l~~~~~~~~~~W~~L~~~~~~~~~ 164 (174)
.|+|+|++.|++.++...+.++||.|++..+.+.|
T Consensus 255 ~tDDFLGciNipl~EiP~~Gld~WFkLepRS~~S~V 290 (1103)
T KOG1328|consen 255 CTDDFLGCINIPLAEIPPDGLDQWFKLEPRSDKSKV 290 (1103)
T ss_pred cccccccccccchhcCCcchHHHHhccCcccccccc
Confidence 38899999999999999999999999997776554
No 203
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.78 E-value=1.9e-08 Score=64.22 Aligned_cols=68 Identities=35% Similarity=0.688 Sum_probs=56.2
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCC-CC-CcCceeec
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL-CT-DEPEWFYL 155 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~-~~-~~~~W~~L 155 (174)
.++|+++..+.||.|||.|.|. +... ....+.|.||+......+.+||.+.+++..+. .. ....|++|
T Consensus 33 ~~~T~~~~~~~~P~w~~~~~~~-~~~~--~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 33 KFKTKVVKNTLNPVWNETFEFP-VLDP--ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred eEecceeCCCCCCcccceEEEE-ccCC--CCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 4688889889999999999998 6543 34779999999988877899999999999987 33 45688875
No 204
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.77 E-value=3.2e-08 Score=63.17 Aligned_cols=69 Identities=36% Similarity=0.667 Sum_probs=55.3
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccccc-CC-CCCceEEe
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL-CT-DEPEWFYL 73 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~-~~-~~~~w~~L 73 (174)
...+|.++.++.||.|||.|.|. +... ....|.|.||+.+..+.+.++|.+.+.+..+. .. ....|++|
T Consensus 32 ~~~~T~~~~~~~~P~w~~~~~~~-~~~~--~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 32 QKFKTKVVKNTLNPVWNETFEFP-VLDP--ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ceEecceeCCCCCCcccceEEEE-ccCC--CCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 45789999999999999999997 6543 24679999999999888899999999998876 22 33447654
No 205
>PLN02952 phosphoinositide phospholipase C
Probab=98.76 E-value=1.7e-08 Score=84.18 Aligned_cols=70 Identities=23% Similarity=0.357 Sum_probs=58.1
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 76 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~ 76 (174)
.+++|+++.++.||+|||+|.|. +...++. .|+|.|||+|..+.++++|...+++..+..+ ..|++|...
T Consensus 513 ~~~kTkvi~nN~nPvWnE~F~F~-i~~PELA--llrf~V~D~D~~~~ddfiGq~~lPv~~Lr~G--yR~VpL~~~ 582 (599)
T PLN02952 513 AKKKTKIIEDNWYPAWNEEFSFP-LTVPELA--LLRIEVREYDMSEKDDFGGQTCLPVSELRPG--IRSVPLHDK 582 (599)
T ss_pred cceeeeeccCCCCcccCCeeEEE-EEcCCcc--EEEEEEEecCCCCCCCeEEEEEcchhHhcCC--ceeEeCcCC
Confidence 35789999999999999999998 7766653 7999999999998999999999999877543 347777544
No 206
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=98.74 E-value=7.6e-09 Score=64.75 Aligned_cols=50 Identities=36% Similarity=0.792 Sum_probs=44.5
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEE
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVI 138 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~ 138 (174)
++|++++++.+|.|||.|.|. +...... .|.|.|||.+..+++++||++.
T Consensus 36 ~~T~~~~~~~~P~w~e~~~~~-~~~~~~~--~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 36 YKTKVKKNTSNPVWNEEFEFP-LDDPDLD--SLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEECCBSSBSSEEEEEEEEEE-ESHGCGT--EEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeeeeccccceeeeeeeee-eeccccc--ceEEEEEECCCCCCCCEEEEEC
Confidence 799999999999999999998 7776655 3999999999998899999873
No 207
>PLN02223 phosphoinositide phospholipase C
Probab=98.74 E-value=2e-08 Score=82.35 Aligned_cols=68 Identities=22% Similarity=0.366 Sum_probs=56.6
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~ 157 (174)
+++|++..++.||+|||.|.|. +..+++. .|.|.|+|++....++|+|+..|++.++..+ -++.+|.+
T Consensus 452 ~~kT~v~nNg~nPvWne~F~F~-i~~PELA--lLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~G--yR~VpL~~ 519 (537)
T PLN02223 452 IMKTTVKNNEWKPTWGEEFTFP-LTYPDLA--LISFEVYDYEVSTADAFCGQTCLPVSELIEG--IRAVPLYD 519 (537)
T ss_pred eeEEEeCCCCcCceecceeEEE-EEccCce--EEEEEEEecCCCCCCcEEEEEecchHHhcCC--ceeEeccC
Confidence 4678888888999999999999 8776654 7899999999888999999999999987443 35577766
No 208
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.73 E-value=2.7e-08 Score=63.75 Aligned_cols=61 Identities=36% Similarity=0.685 Sum_probs=51.5
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 148 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~ 148 (174)
.++|+.+.++.+|.|||.|.|. +.... ...|.|+|||....+.+.++|.+.+++.++....
T Consensus 36 ~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 36 KKKTKVVKNTLNPVWNETFEFE-VPPPE--LAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred eEeeeEecCCCCCcccceEEEE-ecCcc--cCEEEEEEEecCCccCCceeEEEEEEHHHcccCc
Confidence 4789999888999999999998 65543 5789999999887777899999999998876553
No 209
>PLN02952 phosphoinositide phospholipase C
Probab=98.73 E-value=2.6e-08 Score=83.14 Aligned_cols=68 Identities=22% Similarity=0.363 Sum_probs=58.4
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~ 157 (174)
+++|+++.++.||+|||.|.|. +..+++. .+.|.|+|++..+.++|+|+..|+++.+..+- +|++|.+
T Consensus 514 ~~kTkvi~nN~nPvWnE~F~F~-i~~PELA--llrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy--R~VpL~~ 581 (599)
T PLN02952 514 KKKTKIIEDNWYPAWNEEFSFP-LTVPELA--LLRIEVREYDMSEKDDFGGQTCLPVSELRPGI--RSVPLHD 581 (599)
T ss_pred ceeeeeccCCCCcccCCeeEEE-EEcCCcc--EEEEEEEecCCCCCCCeEEEEEcchhHhcCCc--eeEeCcC
Confidence 6789999999999999999998 7766654 78999999998889999999999999875443 5899976
No 210
>PLN02223 phosphoinositide phospholipase C
Probab=98.73 E-value=1.8e-08 Score=82.60 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=55.8
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 76 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~ 76 (174)
+++|++..++.||+|||+|.|. +...++. .|+|.|+|+|..+.++++|+..+++..+.. +...++|...
T Consensus 452 ~~kT~v~nNg~nPvWne~F~F~-i~~PELA--lLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~--GyR~VpL~~~ 520 (537)
T PLN02223 452 IMKTTVKNNEWKPTWGEEFTFP-LTYPDLA--LISFEVYDYEVSTADAFCGQTCLPVSELIE--GIRAVPLYDE 520 (537)
T ss_pred eeEEEeCCCCcCceecceeEEE-EEccCce--EEEEEEEecCCCCCCcEEEEEecchHHhcC--CceeEeccCC
Confidence 4678888899999999999998 8776654 799999999998899999999999987653 3334556443
No 211
>KOG1327|consensus
Probab=98.64 E-value=8.5e-08 Score=78.24 Aligned_cols=135 Identities=22% Similarity=0.354 Sum_probs=96.1
Q ss_pred eceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCC----CCCceEEEEEEecccccCCCCCc-----------
Q psy6192 5 FAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY----GVNDFLGEVIIELSSSLCTDEPE----------- 69 (174)
Q Consensus 5 rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~----~~~~~lG~~~~~l~~~~~~~~~~----------- 69 (174)
||.++.+.+||.|-+.|... .-++.. +.|++.++|.+.. ...+++|.+.+.++.+.......
T Consensus 44 rte~i~~~~~p~f~~~~~l~-y~fE~v--Q~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~ 120 (529)
T KOG1327|consen 44 RTEVIRNVLNPFFTKKFLLQ-YRFEKV--QLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNA 120 (529)
T ss_pred ceeeeeccCCccceeeechh-heeeee--eeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccC
Confidence 79999999999999998776 666665 4799999997753 56799999999987655432110
Q ss_pred -----------------eEEecccceEe--------ccC--------------CCCccccccCCCCCccccEEEeCcccc
Q psy6192 70 -----------------WFYLTKHTLEL--------QFP--------------LSNLSKTLANTNDPKWNQSFFYPGIRR 110 (174)
Q Consensus 70 -----------------w~~L~~~~~~l--------~~p--------------~~~kT~~~~~t~~P~wne~~~f~~~~~ 110 (174)
+..+.-...++ ..| ..++|.+.+++++|.|.+. . ++.
T Consensus 121 ~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~---~-i~~ 196 (529)
T KOG1327|consen 121 GSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPF---S-ISL 196 (529)
T ss_pred CcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCccccc---c-cch
Confidence 10000000000 001 1578999999999999974 2 333
Q ss_pred CCCC----cceEEEEEEeCCCCCCCceeEEEEEeCCcCCC
Q psy6192 111 SDLK----LRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 146 (174)
Q Consensus 111 ~~~~----~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~ 146 (174)
..++ +..+.|.+||++..+++++||++...+.++..
T Consensus 197 ~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 197 QSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred hhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 3333 37889999999999899999999999888754
No 212
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.61 E-value=6.3e-08 Score=80.59 Aligned_cols=69 Identities=22% Similarity=0.351 Sum_probs=55.9
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEecc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK 75 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~ 75 (174)
.++||+++.++.||.|||+|.|. +...++. .|+|.|+|+|..+.++++|...+++..+..+ ...++|..
T Consensus 495 ~~~rTk~v~nn~nP~W~e~f~F~-i~~PeLA--llRf~V~d~D~~~~ddfigq~~lPv~~Lr~G--yR~V~L~~ 563 (581)
T PLN02222 495 VMKKTKTLEDNWIPAWDEVFEFP-LTVPELA--LLRLEVHEYDMSEKDDFGGQTCLPVWELSQG--IRAFPLHS 563 (581)
T ss_pred ceeeeEecCCCCCcccCCeeEEE-EEcCcee--EEEEEEEECCCCCCCcEEEEEEcchhhhhCc--cceEEccC
Confidence 35789999999999999999998 7766654 7999999999888899999999999876543 22345543
No 213
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.60 E-value=5.5e-08 Score=81.09 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=56.0
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 76 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~ 76 (174)
++||++..++.||.|||+|.|. +...++. .|+|.|+|+|....++++|+..+++..+..+ ...++|...
T Consensus 513 ~~kT~v~~n~~nP~Wneef~F~-l~vPELA--llRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~G--yR~V~L~~~ 581 (598)
T PLN02230 513 MEKTKIEYDTWTPIWNKEFIFP-LAVPELA--LLRVEVHEHDINEKDDFGGQTCLPVSEIRQG--IHAVPLFNR 581 (598)
T ss_pred ccceeccCCCCCCccCCeeEEE-EEcCcee--EEEEEEEECCCCCCCCEEEEEEcchHHhhCc--cceEeccCC
Confidence 4688888999999999999998 7776654 7999999999988999999999999876543 333455443
No 214
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.54 E-value=1.1e-07 Score=79.42 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=56.9
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~ 157 (174)
+++|++..++.||+|||.|.|. +..+++. .|.|.|+|++...+++|+|+..|++.++..+ -+..+|.+
T Consensus 513 ~~kT~v~~n~~nP~Wneef~F~-l~vPELA--llRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~G--yR~V~L~~ 580 (598)
T PLN02230 513 MEKTKIEYDTWTPIWNKEFIFP-LAVPELA--LLRVEVHEHDINEKDDFGGQTCLPVSEIRQG--IHAVPLFN 580 (598)
T ss_pred ccceeccCCCCCCccCCeeEEE-EEcCcee--EEEEEEEECCCCCCCCEEEEEEcchHHhhCc--cceEeccC
Confidence 5788998899999999999999 7766654 7899999999888999999999999987443 33467766
No 215
>KOG0169|consensus
Probab=98.53 E-value=7e-08 Score=81.07 Aligned_cols=60 Identities=25% Similarity=0.477 Sum_probs=52.9
Q ss_pred eEece-eecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC
Q psy6192 3 KEFAK-TLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 65 (174)
Q Consensus 3 k~rT~-~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~ 65 (174)
+++|+ +..++.||.|+|+|.|. ++..++. .|+|.|+|+|..++|+|+|+..+++..+..+
T Consensus 658 ~~~Tk~v~~NgfnP~W~e~f~F~-l~vPELA--liRF~V~d~d~~~~ddF~GQ~tlP~~~L~~G 718 (746)
T KOG0169|consen 658 EQKTKVVKNNGFNPIWDEEFEFQ-LSVPELA--LIRFEVHDYDYIGKDDFIGQTTLPVSELRQG 718 (746)
T ss_pred hhhceeeccCCcCcccCCeEEEE-Eecccee--EEEEEEEecCCCCcccccceeeccHHHhhCc
Confidence 46888 56788999999999999 8888875 7999999999999999999999999877643
No 216
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.51 E-value=1.5e-07 Score=78.46 Aligned_cols=68 Identities=22% Similarity=0.364 Sum_probs=56.6
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~ 157 (174)
+++|+++.++.||+|||.|.|. +..+++. .|.|.|+|++....++|||+..|++..+..+ -+..+|.+
T Consensus 496 ~~rTk~v~nn~nP~W~e~f~F~-i~~PeLA--llRf~V~d~D~~~~ddfigq~~lPv~~Lr~G--yR~V~L~~ 563 (581)
T PLN02222 496 MKKTKTLEDNWIPAWDEVFEFP-LTVPELA--LLRLEVHEYDMSEKDDFGGQTCLPVWELSQG--IRAFPLHS 563 (581)
T ss_pred eeeeEecCCCCCcccCCeeEEE-EEcCcee--EEEEEEEECCCCCCCcEEEEEEcchhhhhCc--cceEEccC
Confidence 6789999998999999999998 7766654 7899999999888899999999999987443 34466655
No 217
>KOG1326|consensus
Probab=98.51 E-value=9.2e-08 Score=82.19 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=44.3
Q ss_pred eceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccc
Q psy6192 5 FAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61 (174)
Q Consensus 5 rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~ 61 (174)
++..+.+|+||+|++.|.+. .+.. ....|.+.|||+|..+.++.+|+..++|..
T Consensus 650 ~~~yip~tlnPVfgkmfel~-~~lp--~ek~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 650 RAHYIPNTLNPVFGKMFELE-CLLP--FEKDLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred hhhcCcCCCCcHHHHHHHhh-cccc--hhhcceeEEEEeecccccchhhceehhhhh
Confidence 56788999999999988765 3322 246789999999999999999999998854
No 218
>KOG0169|consensus
Probab=98.43 E-value=1.9e-07 Score=78.51 Aligned_cols=68 Identities=24% Similarity=0.411 Sum_probs=56.6
Q ss_pred CCccc-cccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192 85 SNLSK-TLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~-~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~ 157 (174)
.++|+ +..++-||.|+|.|.|. +..+++. -|.+.|+|++..++|+|+|+..|+++++..+=+ + .+|.+
T Consensus 658 ~~~Tk~v~~NgfnP~W~e~f~F~-l~vPELA--liRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyR-h-VpL~~ 726 (746)
T KOG0169|consen 658 EQKTKVVKNNGFNPIWDEEFEFQ-LSVPELA--LIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYR-H-VPLLS 726 (746)
T ss_pred hhhceeeccCCcCcccCCeEEEE-Eecccee--EEEEEEEecCCCCcccccceeeccHHHhhCcee-e-eeecC
Confidence 67899 66778999999999999 8887766 789999999999999999999999998755422 2 55555
No 219
>KOG1011|consensus
Probab=98.42 E-value=1.3e-07 Score=78.54 Aligned_cols=72 Identities=26% Similarity=0.605 Sum_probs=57.5
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCC-----------CCCceeEEEEEeCCcCCCCCcCcee
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY-----------GVNDFLGEVIIELSSSLCTDEPEWF 153 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~-----------~~~~~iG~~~l~l~~~~~~~~~~W~ 153 (174)
+++|+++...+||+|||.|+|. ...+ ..++.+.|||.+.. .+|+|+|+..|.+..+ .+.+.-||
T Consensus 328 krrtrti~~~lnpvw~ekfhfe-chns---tdrikvrvwded~dlksklrqkl~resddflgqtvievrtl-sgemdvwy 402 (1283)
T KOG1011|consen 328 KRRTRTIHQELNPVWNEKFHFE-CHNS---TDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTL-SGEMDVWY 402 (1283)
T ss_pred chhhHhhhhccchhhhhheeee-ecCC---CceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEec-ccchhhhc
Confidence 6788999999999999999998 3322 37899999997643 2688999999998765 45677999
Q ss_pred ecccCCCC
Q psy6192 154 YLTKHKNS 161 (174)
Q Consensus 154 ~L~~~~~~ 161 (174)
.|..+.+.
T Consensus 403 nlekrtdk 410 (1283)
T KOG1011|consen 403 NLEKRTDK 410 (1283)
T ss_pred chhhccch
Confidence 99885554
No 220
>KOG0905|consensus
Probab=98.37 E-value=2.2e-07 Score=81.20 Aligned_cols=74 Identities=26% Similarity=0.389 Sum_probs=66.1
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH 76 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~ 76 (174)
|+||+++++|.||.|||++++.+++.+.+..+.|.++||..+.+..+.++|.+.++|..+.... ...||.|...
T Consensus 1562 KRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1562 KRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred hhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 6899999999999999999999899999988999999999999999999999999999887543 4469998643
No 221
>KOG0905|consensus
Probab=98.37 E-value=2.5e-07 Score=80.90 Aligned_cols=73 Identities=25% Similarity=0.395 Sum_probs=65.8
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L~~ 157 (174)
|+||++.++|+||.|||.+++.+++.+.+..+.|.++||..+.+..+.++|.+.|+|.+....+ ...||.|..
T Consensus 1562 KRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1562 KRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred hhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 8899999999999999999999778888888999999999999999999999999999987764 459999853
No 222
>PLN02228 Phosphoinositide phospholipase C
Probab=98.35 E-value=6.3e-07 Score=74.52 Aligned_cols=69 Identities=23% Similarity=0.337 Sum_probs=55.7
Q ss_pred eEeceeecCCCCCcc-CceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192 3 KEFAKTLANTNDPKW-NQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH 76 (174)
Q Consensus 3 k~rT~~~~~t~nP~w-~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~ 76 (174)
++||+++.++.||.| ||+|.|. +...++. .|+|.|+|+|..+.++++|...+++..+.. +...++|...
T Consensus 475 ~~rTk~~~n~~nP~W~~e~f~F~-~~~pELA--~lRf~V~D~d~~~~d~figq~~lPv~~Lr~--GYR~VpL~~~ 544 (567)
T PLN02228 475 SYRTETAVDQWFPIWGNDEFLFQ-LRVPELA--LLWFKVQDYDNDTQNDFAGQTCLPLPELKS--GVRAVRLHDR 544 (567)
T ss_pred cceeeccCCCCCceECCCeEEEE-EEcCcee--EEEEEEEeCCCCCCCCEEEEEEcchhHhhC--CeeEEEccCC
Confidence 578999988899999 9999998 7766654 799999999988899999999999987643 3334455443
No 223
>KOG1031|consensus
Probab=98.33 E-value=3.3e-07 Score=75.32 Aligned_cols=81 Identities=22% Similarity=0.433 Sum_probs=67.4
Q ss_pred CCccccccCCCCCccc-cEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-----------CcCce
Q psy6192 85 SNLSKTLANTNDPKWN-QSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-----------DEPEW 152 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wn-e~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-----------~~~~W 152 (174)
.+||.+-.+++||.|| +.|.|. +...+++++.|.|.+.|++..+.++-||.|.|+++-+... -..+|
T Consensus 37 t~ktdvf~kslnp~wnsdwfkfe-vddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw 115 (1169)
T KOG1031|consen 37 TFKTDVFLKSLNPQWNSDWFKFE-VDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGW 115 (1169)
T ss_pred ceehhhhhhhcCCcccccceEEe-cChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeee
Confidence 4789999999999999 799998 9999999999999999999999999999999999876432 12589
Q ss_pred eeccc--CCCCCCCCc
Q psy6192 153 FYLTK--HKNSGSNPT 166 (174)
Q Consensus 153 ~~L~~--~~~~~~~~~ 166 (174)
+++.+ .|=.|.+.+
T Consensus 116 ~pifdtihgirgeinv 131 (1169)
T KOG1031|consen 116 FPIFDTIHGIRGEINV 131 (1169)
T ss_pred eecceecccccceeEE
Confidence 99887 343444433
No 224
>PLN02228 Phosphoinositide phospholipase C
Probab=98.27 E-value=1.3e-06 Score=72.77 Aligned_cols=68 Identities=25% Similarity=0.365 Sum_probs=56.4
Q ss_pred CCccccccCCCCCcc-ccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKW-NQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~w-ne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~ 157 (174)
+++|++++++.||+| ||.|.|. +..+++. -|.|.|+|.+..+.++|||+..|+++.+.. .-+..+|.+
T Consensus 475 ~~rTk~~~n~~nP~W~~e~f~F~-~~~pELA--~lRf~V~D~d~~~~d~figq~~lPv~~Lr~--GYR~VpL~~ 543 (567)
T PLN02228 475 SYRTETAVDQWFPIWGNDEFLFQ-LRVPELA--LLWFKVQDYDNDTQNDFAGQTCLPLPELKS--GVRAVRLHD 543 (567)
T ss_pred cceeeccCCCCCceECCCeEEEE-EEcCcee--EEEEEEEeCCCCCCCCEEEEEEcchhHhhC--CeeEEEccC
Confidence 578999888899999 9999999 8766654 789999999988899999999999998733 334567766
No 225
>KOG1264|consensus
Probab=98.22 E-value=1.8e-06 Score=73.34 Aligned_cols=61 Identities=15% Similarity=0.295 Sum_probs=52.0
Q ss_pred CceEeceeecCCCCCccC-ceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192 1 GFKEFAKTLANTNDPKWN-QSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 64 (174)
Q Consensus 1 ~~k~rT~~~~~t~nP~w~-E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~ 64 (174)
+++++|.++.+.+||+|| |+|.|. +...++ ..|+|.|||.|.++...|||.+.+++..+..
T Consensus 1101 ~~~~t~~V~dNGlnPiWn~e~ftFe-I~nPe~--A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1101 NKFKTTVVNDNGLNPIWNPEKFTFE-IYNPEF--AFLRFVVYEEDMFSDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred CceEEEEeccCCCCCCCCCcceEEE-eeCCce--EEEEEEEecccccCCcceeeeeecchhhhhc
Confidence 345677788999999999 999998 877665 4899999999999999999999999976543
No 226
>KOG2059|consensus
Probab=98.14 E-value=2.3e-06 Score=71.55 Aligned_cols=68 Identities=24% Similarity=0.450 Sum_probs=60.0
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~ 157 (174)
..+|.++.+++.|.|.|.|.|. ++..= ..|.|-|||.+ +++|+.||.+.|.-.++... +.+.|+.|++
T Consensus 39 v~RT~tv~ksL~PF~gEe~~~~-iP~~F---~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~ 107 (800)
T KOG2059|consen 39 VCRTATVEKSLCPFFGEEFYFE-IPRTF---RYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQP 107 (800)
T ss_pred hhhhhhhhhhcCCccccceEEe-cCcce---eeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceeccc
Confidence 3789999999999999999998 77542 56999999999 99999999999998887655 6789999998
No 227
>PLN02270 phospholipase D alpha
Probab=98.03 E-value=9e-06 Score=69.82 Aligned_cols=69 Identities=20% Similarity=0.421 Sum_probs=56.4
Q ss_pred CccccccCC-CCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCC
Q psy6192 86 NLSKTLANT-NDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHK 159 (174)
Q Consensus 86 ~kT~~~~~t-~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~ 159 (174)
.+|+++.+. .||+|||+|... +.... ..+.|+|.|.+.++ ..+||.+.|++.++..+ ..++||++..+.
T Consensus 61 ~rtr~~~~~~~~p~w~e~f~i~---~ah~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~ 131 (808)
T PLN02270 61 GRTRKIENEPKNPRWYESFHIY---CAHMA-SNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDND 131 (808)
T ss_pred EEEeecCCCCCCCccccceEEe---eccCc-ceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCC
Confidence 589999875 599999998855 44444 77999999988774 45999999999998877 578999998744
No 228
>KOG1326|consensus
Probab=97.97 E-value=1.6e-05 Score=68.91 Aligned_cols=142 Identities=17% Similarity=0.280 Sum_probs=92.6
Q ss_pred CceEeceeecCCCCCccCceEEcCCcCcCc-----CC-cceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEec
Q psy6192 1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSD-----LK-LRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT 74 (174)
Q Consensus 1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~-----~~-~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~ 74 (174)
|+-+.|.++.+|+||.|+.+..|.++..-. +. --.+.+++||.++.+.++++|...+...-....+...|+++.
T Consensus 237 ~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~~p~lkw~p~~ 316 (1105)
T KOG1326|consen 237 GQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQCPALKWVPTM 316 (1105)
T ss_pred cccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEecCCccceEEee
Confidence 456789999999999999999997432210 00 135779999999999999999976665544444555677664
Q ss_pred ccc---e-------------EeccCC-----------------------------------------------------C
Q psy6192 75 KHT---L-------------ELQFPL-----------------------------------------------------S 85 (174)
Q Consensus 75 ~~~---~-------------~l~~p~-----------------------------------------------------~ 85 (174)
..+ + .+..|. .
T Consensus 317 rg~~l~gd~l~a~eliq~~~~i~~p~~~~~~~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~ 396 (1105)
T KOG1326|consen 317 RGAFLDGDVLIAAELIQIGKPIPQPPPQREIIFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGER 396 (1105)
T ss_pred cccccccchhHHHHHHhhcCCCCCCCcccccceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCce
Confidence 321 0 011110 1
Q ss_pred Cccccc-cCCCCCccccEEEeCc--cccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCC
Q psy6192 86 NLSKTL-ANTNDPKWNQSFFYPG--IRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS 142 (174)
Q Consensus 86 ~kT~~~-~~t~~P~wne~~~f~~--~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~ 142 (174)
-.+-.+ ....||.++..+.+-. ++..++.-..+.++|.|.+.+++-..+|++.+.-.
T Consensus 397 v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l 456 (1105)
T KOG1326|consen 397 VSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSL 456 (1105)
T ss_pred EeeeeehhhhhCCCCceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhh
Confidence 112222 2335777776665541 34455555789999999999999999999877643
No 229
>KOG1031|consensus
Probab=97.94 E-value=5.7e-06 Score=68.23 Aligned_cols=61 Identities=23% Similarity=0.452 Sum_probs=55.0
Q ss_pred eEeceeecCCCCCccC-ceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192 3 KEFAKTLANTNDPKWN-QSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 64 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~-E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~ 64 (174)
..+|.+..+++||.|| +-|.|+ +...++++..|.|.+.|+|.++.++-||++.+++..+-.
T Consensus 37 t~ktdvf~kslnp~wnsdwfkfe-vddadlqdeplqi~lld~dtysandaigkv~i~idpl~~ 98 (1169)
T KOG1031|consen 37 TFKTDVFLKSLNPQWNSDWFKFE-VDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCL 98 (1169)
T ss_pred ceehhhhhhhcCCcccccceEEe-cChhhhccCCeeEEEecccccccccccceeeeccChHHH
Confidence 4688899999999999 578897 989999999999999999999999999999999987544
No 230
>KOG1011|consensus
Probab=97.85 E-value=2.2e-05 Score=65.65 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=60.3
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCc-CCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCc-eEEecc
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSD-LKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPE-WFYLTK 75 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~-~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~-w~~L~~ 75 (174)
+|+.|+++.++..|.|||+|.|- +..+. .....|.+.|-||...+.|+.+|...+.|+++...+... |++|..
T Consensus 1163 RK~~TKtKsnnWaPKyNEtF~f~-Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1163 RKFSTKTKSNNWAPKYNETFHFF-LGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred hhccccccCCCcCcccCceeEEE-eccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence 45669999999999999999997 65543 345779999999998889999999999999988766554 999954
No 231
>PLN02964 phosphatidylserine decarboxylase
Probab=97.79 E-value=3e-05 Score=65.70 Aligned_cols=97 Identities=16% Similarity=0.291 Sum_probs=73.3
Q ss_pred CCCCCceEEEEEEecccccCCCCCceEEecccceEeccCCCCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEe
Q psy6192 45 RYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWD 124 (174)
Q Consensus 45 ~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~~~~l~~p~~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d 124 (174)
.++.+++-|-+.+.|-.....-...|+..---+-. .+||...++|.||+|||...|. +.+.++. ...+.|||
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~f~t~~~~~~~~p~~~~~~~~~-~~~~~~~--~~~~~~~~ 117 (644)
T PLN02964 46 AVSAEDFSGIALLTLVGAEMKFKDKWLACVSFGEQ-----TFRTETSDSTDKPVWNSEKKLL-LEKNGPH--LARISVFE 117 (644)
T ss_pred ceecccccCeEEEEeehhhhccCCcEEEEEEecce-----eeeeccccccCCcccchhhceE-eccCCcc--eEEEEEEe
Confidence 34677888888888765444444557665322211 3799999999999999988887 7666655 35999999
Q ss_pred CCCCCCCceeEEEEEeCCcCCCCCc
Q psy6192 125 YTRYGVNDFLGEVIIELSSSLCTDE 149 (174)
Q Consensus 125 ~~~~~~~~~iG~~~l~l~~~~~~~~ 149 (174)
.+.++.++.+|.+.+++..+...+.
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi 142 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEP 142 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHH
Confidence 9999999999999999988766543
No 232
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.74 E-value=3.2e-05 Score=52.12 Aligned_cols=70 Identities=23% Similarity=0.373 Sum_probs=54.4
Q ss_pred CCccccccCCCCCccccEEEeCccc-------------cCCCCcceEEEEEEeCCCC----------CCCceeEEEEEeC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIR-------------RSDLKLRSIEITVWDYTRY----------GVNDFLGEVIIEL 141 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~-------------~~~~~~~~l~i~v~d~~~~----------~~~~~iG~~~l~l 141 (174)
.++|++..++-.|.|+-.+.|. .+ .+-+....+.++||....- .+|-.||.+.|++
T Consensus 49 ~r~TrtVArSFcPeF~Hh~Efp-c~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl 127 (143)
T cd08683 49 LRRTRTVARSFCPEFNHHVEFP-CNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPL 127 (143)
T ss_pred eeeccchhhhcCCCccceEEEe-cccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeH
Confidence 4789999999999999999998 44 1224557899999974322 2445799999999
Q ss_pred CcCCCC--CcCceeec
Q psy6192 142 SSSLCT--DEPEWFYL 155 (174)
Q Consensus 142 ~~~~~~--~~~~W~~L 155 (174)
.++... +.++||++
T Consensus 128 ~~Ll~~rsGitGW~pi 143 (143)
T cd08683 128 RDLLTKRSGITGWYPI 143 (143)
T ss_pred HHHhhcccCccccccC
Confidence 998865 78999985
No 233
>KOG1264|consensus
Probab=97.73 E-value=3.4e-05 Score=65.87 Aligned_cols=59 Identities=15% Similarity=0.343 Sum_probs=50.4
Q ss_pred CccccccCCCCCccc-cEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC
Q psy6192 86 NLSKTLANTNDPKWN-QSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147 (174)
Q Consensus 86 ~kT~~~~~t~~P~wn-e~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~ 147 (174)
+.|.+..+.+||+|| |.|+|. +.++++. -|++.|+|.|.++...|||++..++..+..+
T Consensus 1104 ~t~~V~dNGlnPiWn~e~ftFe-I~nPe~A--~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1104 KTTVVNDNGLNPIWNPEKFTFE-IYNPEFA--FLRFVVYEEDMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred EEEEeccCCCCCCCCCcceEEE-eeCCceE--EEEEEEecccccCCcceeeeeecchhhhhcc
Confidence 345566788999999 999999 8887765 7899999999999888999999999987554
No 234
>KOG1013|consensus
Probab=97.68 E-value=3.6e-05 Score=59.39 Aligned_cols=79 Identities=22% Similarity=0.347 Sum_probs=63.1
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEecccceEec
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHTLELQ 81 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~~~~l~ 81 (174)
.|++|.+.++|++|.||+.|.|. +...++....+.|.+||++..+..+++|-+..-..
T Consensus 270 fkkKt~~~K~t~~p~fd~~~~~~-i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~--------------------- 327 (362)
T KOG1013|consen 270 FKKKTQQKKKTLNPEFDEEFFYD-IGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY--------------------- 327 (362)
T ss_pred hcccCcchhccCCcccccccccc-CCccchhcceEEEeecccCCCcCccCCCccccccc---------------------
Confidence 36789999999999999999998 99999988999999999998878888887654221
Q ss_pred cCCCCccccccCCCCCccccEEEeC
Q psy6192 82 FPLSNLSKTLANTNDPKWNQSFFYP 106 (174)
Q Consensus 82 ~p~~~kT~~~~~t~~P~wne~~~f~ 106 (174)
+++.+.+....|.|+..+.|.
T Consensus 328 ----rr~~v~~h~gr~~~~~~a~~~ 348 (362)
T KOG1013|consen 328 ----RRGEVHKHWGRCLFDQDANFE 348 (362)
T ss_pred ----ccchhhcCccccccccccccc
Confidence 456666666667777666655
No 235
>KOG2060|consensus
Probab=97.55 E-value=5e-05 Score=59.54 Aligned_cols=73 Identities=23% Similarity=0.357 Sum_probs=60.3
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEE-eCCCCCCCceeEEEEEeCCcCCCCC--cCceeecccCCCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVW-DYTRYGVNDFLGEVIIELSSSLCTD--EPEWFYLTKHKNS 161 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~-d~~~~~~~~~iG~~~l~l~~~~~~~--~~~W~~L~~~~~~ 161 (174)
+.+|+..++|+.|.|-....|. -+ .....|.++|| |+....++.|+|.+++-++++.... ...||+|.+....
T Consensus 308 k~ktk~A~kT~~plyqq~l~f~-~s---p~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsssl 383 (405)
T KOG2060|consen 308 KKKTKSARKTLDPLYQQQLSFD-QS---PPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSSL 383 (405)
T ss_pred ccccccccccCchhhhhhhhhc-cC---CCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCccC
Confidence 7889999999999999999988 33 34578999999 5777788899999999999987764 5699999885443
No 236
>PLN02270 phospholipase D alpha
Probab=97.47 E-value=0.00024 Score=61.37 Aligned_cols=68 Identities=22% Similarity=0.416 Sum_probs=53.8
Q ss_pred EeceeecCC-CCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEeccc
Q psy6192 4 EFAKTLANT-NDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTKH 76 (174)
Q Consensus 4 ~rT~~~~~t-~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~~ 76 (174)
-||.++.+. .||.|+|.|... +.... ..+.|.|-|.+.++. .+||.+.++..++..... ..|+++...
T Consensus 61 ~rtr~~~~~~~~p~w~e~f~i~-~ah~~---~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~ 130 (808)
T PLN02270 61 GRTRKIENEPKNPRWYESFHIY-CAHMA---SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDN 130 (808)
T ss_pred EEEeecCCCCCCCccccceEEe-eccCc---ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCC
Confidence 389999875 599999998776 54443 569999999999887 599999999998776544 449998653
No 237
>PLN02964 phosphatidylserine decarboxylase
Probab=97.41 E-value=7.2e-05 Score=63.45 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=50.2
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 64 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~ 64 (174)
+-+||++.++|+||+|||.-.|. +....+. ..+|.|||.+.++.++++|.+++++..+..
T Consensus 80 ~~f~t~~~~~~~~p~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~ 139 (644)
T PLN02964 80 QTFRTETSDSTDKPVWNSEKKLL-LEKNGPH--LARISVFETNRLSKNTLVGYCELDLFDFVT 139 (644)
T ss_pred eeeeeccccccCCcccchhhceE-eccCCcc--eEEEEEEecCCCCHHHhhhheeecHhhccH
Confidence 34799999999999999988886 6666654 469999999999999999999997755443
No 238
>PLN02352 phospholipase D epsilon
Probab=97.30 E-value=0.00038 Score=59.91 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=47.0
Q ss_pred cCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-C-cCceeecccCC
Q psy6192 92 ANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-D-EPEWFYLTKHK 159 (174)
Q Consensus 92 ~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~-~~~W~~L~~~~ 159 (174)
.+..||+|||+|... +....+..+.|+|.| ...+||.+.|++.++..+ . .++|+++..+.
T Consensus 53 ~~~~~p~w~e~f~i~---~ah~~~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~ 114 (758)
T PLN02352 53 SHEYDRVWNQTFQIL---CAHPLDSTITITLKT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN 114 (758)
T ss_pred CCCCCCccccceeEE---eeeecCCcEEEEEec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC
Confidence 455699999998855 444444579999988 356899999999998877 4 68999998744
No 239
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.25 E-value=0.00046 Score=46.61 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=52.3
Q ss_pred CceEeceeecCCCCCccCceEEcCCcC-------------cCcCCcceEEEEEEeCCCCC----------CCceEEEEEE
Q psy6192 1 GFKEFAKTLANTNDPKWNQSFFYPGIR-------------RSDLKLRSIEITVWDYTRYG----------VNDFLGEVII 57 (174)
Q Consensus 1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~-------------~~~~~~~~L~i~v~d~~~~~----------~~~~lG~~~~ 57 (174)
+.+++|+++.++-+|.|+-.+.|. ++ .+.+....+.++||+...-+ .|-.||.+.+
T Consensus 47 ~e~r~TrtVArSFcPeF~Hh~Efp-c~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~I 125 (143)
T cd08683 47 KELRRTRTVARSFCPEFNHHVEFP-CNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKI 125 (143)
T ss_pred CceeeccchhhhcCCCccceEEEe-cccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEe
Confidence 356789999999999999988886 43 12334456889999976432 3457999999
Q ss_pred ecccccCC--CCCceEEe
Q psy6192 58 ELSSSLCT--DEPEWFYL 73 (174)
Q Consensus 58 ~l~~~~~~--~~~~w~~L 73 (174)
++.++... +...||++
T Consensus 126 Pl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 126 PLRDLLTKRSGITGWYPI 143 (143)
T ss_pred eHHHHhhcccCccccccC
Confidence 99987643 23448874
No 240
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=96.98 E-value=0.00064 Score=44.40 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=38.8
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCC
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL 145 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~ 145 (174)
+.+|++ +.||.|||.|.|+ +. ....+++.|||...- ..-.||-.-|.++++.
T Consensus 36 kaRTr~---srnd~WnE~F~i~-Vd----k~nEiel~VyDk~~~-~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 36 RARTKP---SRNDRWNEDFEIP-VE----KNNEEEVIVYDKGGD-QPVPVGLLWLRLSDIA 87 (109)
T ss_pred EEeccC---CCCCcccceEEEE-ec----CCcEEEEEEEeCCCC-eecceeeehhhHHHHH
Confidence 356766 5899999999998 63 247899999997542 3346888888888764
No 241
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=96.96 E-value=0.001 Score=43.47 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=37.8
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL 63 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~ 63 (174)
+.||++ +.||.|||+|.|+ + +. ...+.+.|||...- ..-.+|..-+.++++.
T Consensus 36 kaRTr~---srnd~WnE~F~i~-V--dk--~nEiel~VyDk~~~-~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 36 RARTKP---SRNDRWNEDFEIP-V--EK--NNEEEVIVYDKGGD-QPVPVGLLWLRLSDIA 87 (109)
T ss_pred EEeccC---CCCCcccceEEEE-e--cC--CcEEEEEEEeCCCC-eecceeeehhhHHHHH
Confidence 445655 4799999999998 6 32 45799999998642 3457888877776654
No 242
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.78 E-value=0.0044 Score=43.83 Aligned_cols=57 Identities=26% Similarity=0.415 Sum_probs=46.2
Q ss_pred eceeecCCCCCccCceEEcCCcCcCcCCc-ceEEEEEEeCCCCCCCceEEEEEEecccc
Q psy6192 5 FAKTLANTNDPKWNQSFFYPGIRRSDLKL-RSIEITVWDYTRYGVNDFLGEVIIELSSS 62 (174)
Q Consensus 5 rT~~~~~t~nP~w~E~f~f~~v~~~~~~~-~~L~i~v~d~~~~~~~~~lG~~~~~l~~~ 62 (174)
+|+.+.-+..+.|||-+.|+ +...++.. ..|.|.||+++..+....+|.+.++|-+.
T Consensus 50 ~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 50 QTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred EccccCCCCCcccceeEEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 55556556678999999999 88887764 67999999998766778999999998654
No 243
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.62 E-value=0.006 Score=43.14 Aligned_cols=57 Identities=26% Similarity=0.440 Sum_probs=43.7
Q ss_pred ccccccCCCCCccccEEEeCccccCCC-CcceEEEEEEeCCCCCCCceeEEEEEeCCcC
Q psy6192 87 LSKTLANTNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYGVNDFLGEVIIELSSS 144 (174)
Q Consensus 87 kT~~~~~t~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~ 144 (174)
.|+.+.-+..+.|||.+.|+ +...++ .++.|.|+|||....+....||.+.+.+-+-
T Consensus 50 ~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 50 QTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred EccccCCCCCcccceeEEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 44444444668899999999 876665 4478999999987655667899999999774
No 244
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.92 E-value=0.023 Score=39.88 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=42.3
Q ss_pred ceeecCCCCCccCceEEcCCcCcCcCC-cceEEEEEEeCCCCC--CCceEEEEEEecccc
Q psy6192 6 AKTLANTNDPKWNQSFFYPGIRRSDLK-LRSIEITVWDYTRYG--VNDFLGEVIIELSSS 62 (174)
Q Consensus 6 T~~~~~t~nP~w~E~f~f~~v~~~~~~-~~~L~i~v~d~~~~~--~~~~lG~~~~~l~~~ 62 (174)
|.......++.|||.+.|+ +...++. ...|.|.+|+.+..+ ....||.+.++|-+.
T Consensus 49 t~~~~~~~~~~Wne~l~F~-i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 49 TKKVPFSTSVTWNEWLTFD-ILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ccCCcCCCCCcccceeEcc-chhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 3333334689999999998 7776665 367899999987654 468999999998653
No 245
>KOG1265|consensus
Probab=95.82 E-value=0.028 Score=49.21 Aligned_cols=55 Identities=20% Similarity=0.454 Sum_probs=41.4
Q ss_pred Cccccc-cCCCCCcccc-EEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCC
Q psy6192 86 NLSKTL-ANTNDPKWNQ-SFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 146 (174)
Q Consensus 86 ~kT~~~-~~t~~P~wne-~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~ 146 (174)
++|++. .++.||+|+| .|+|..|-.+++. .|.|.||+.+ +.+||+=.++++.+..
T Consensus 740 ~rtrt~~~n~~npvy~eepfvF~KVvLpeLA--~lRiavyeEg----gK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 740 FRTRTVQGNSFNPVYEEEPFVFRKVVLPELA--SLRIAVYEEG----GKFIGQRILPVDGLNA 796 (1189)
T ss_pred hhhccccCCCCCcccccCCcccceecccchh--heeeeeeccC----CceeeeeccchhcccC
Confidence 566654 4679999994 8999855555554 8999999854 4599999999987643
No 246
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=95.79 E-value=0.016 Score=40.05 Aligned_cols=57 Identities=23% Similarity=0.291 Sum_probs=42.7
Q ss_pred eceeecCC-CCCccCceEEcCCcCcCcCCc-ceEEEEEEeCCCCCCC----ceEEEEEEecccc
Q psy6192 5 FAKTLANT-NDPKWNQSFFYPGIRRSDLKL-RSIEITVWDYTRYGVN----DFLGEVIIELSSS 62 (174)
Q Consensus 5 rT~~~~~t-~nP~w~E~f~f~~v~~~~~~~-~~L~i~v~d~~~~~~~----~~lG~~~~~l~~~ 62 (174)
.|+...-+ .++.|||.+.|+ +...++.. ..|.|.||..+..... ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 56666555 799999999998 87777764 6788999998876555 6999999998654
No 247
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=95.74 E-value=0.018 Score=39.79 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=42.2
Q ss_pred ccccccCC-CCCccccEEEeCccccCCC-CcceEEEEEEeCCCCCCC----ceeEEEEEeCCcC
Q psy6192 87 LSKTLANT-NDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYGVN----DFLGEVIIELSSS 144 (174)
Q Consensus 87 kT~~~~~t-~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~~~----~~iG~~~l~l~~~ 144 (174)
.|+....+ .++.|||.+.|+ +...++ .+..|.|+||........ ..||.+.+.+-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 45545444 789999999999 876554 447799999987765554 6899999999875
No 248
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.72 E-value=0.064 Score=37.88 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=37.4
Q ss_pred CCCccccEEEeCccccCCC-CcceEEEEEEeCCCCC----CCceeEEEEEeCCcC
Q psy6192 95 NDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYG----VNDFLGEVIIELSSS 144 (174)
Q Consensus 95 ~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~----~~~~iG~~~l~l~~~ 144 (174)
.++.|||.+.|+ +...++ .++.|.|++|+..... ....||.+.+.|-+-
T Consensus 53 ~~~~WnEwL~fp-I~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 53 SNPRWNEWLDYD-IYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred CCCccceeEEcc-cchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECC
Confidence 579999999999 876665 4478999999975422 124699999999774
No 249
>KOG1327|consensus
Probab=95.59 E-value=0.014 Score=48.37 Aligned_cols=60 Identities=25% Similarity=0.376 Sum_probs=44.7
Q ss_pred EeceeecCCCCCccCceEEc-CCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192 4 EFAKTLANTNDPKWNQSFFY-PGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 64 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f-~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~ 64 (174)
++|.++++++||.|.+...- ..+...+. ...+.+.+||++..+.+++||++..++..+..
T Consensus 176 ~~tEv~~n~l~p~w~~~~i~~~~l~~~~~-~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 176 YRTEVVKNTLNPQWAPFSISLQSLCSKDG-NRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred cccceeccCCCCcccccccchhhhcccCC-CCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 58999999999999973211 10111111 36788999999999999999999988887653
No 250
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.50 E-value=0.038 Score=39.90 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=38.8
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCC---ceeEEEEEeCCc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVN---DFLGEVIIELSS 143 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~---~~iG~~~l~l~~ 143 (174)
...|.+...+.+|.|+|.|-.+ ++.....+.-|.|++++...-.+. ..+|.+.++|.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~-LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQ-LPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEE-E-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEE-cCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3678888888999999999998 998888888999999987643322 689999999987
No 251
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.50 E-value=0.036 Score=38.87 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=39.6
Q ss_pred CCCCccccEEEeCccccCCC-CcceEEEEEEeCCCCC--CCceeEEEEEeCCcCC
Q psy6192 94 TNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYG--VNDFLGEVIIELSSSL 145 (174)
Q Consensus 94 t~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~--~~~~iG~~~l~l~~~~ 145 (174)
..++.|||.+.|+ +...++ .+..|.|++|+..... ....||.+.+.+-+..
T Consensus 55 ~~~~~Wne~l~F~-i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 55 STSVTWNEWLTFD-ILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred CCCCcccceeEcc-chhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEccc
Confidence 3679999999999 765554 4478999999976543 4578999999998743
No 252
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=95.38 E-value=0.057 Score=39.17 Aligned_cols=55 Identities=16% Similarity=0.320 Sum_probs=44.1
Q ss_pred EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCC--CCceEEEEEEec
Q psy6192 4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG--VNDFLGEVIIEL 59 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~--~~~~lG~~~~~l 59 (174)
.+|.+...+.+|.|+|++... ++.+......|.|..++...-. ....+|.+-++|
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~-lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLP-IPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEe-cChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 578888888899999999998 9999998899999888755322 125688887777
No 253
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.38 E-value=0.054 Score=38.84 Aligned_cols=57 Identities=16% Similarity=0.302 Sum_probs=42.4
Q ss_pred eceeecCCCCCccCceEEcCCcCcCcCCc-ceEEEEEEeCCCCC----------------CCceEEEEEEecccc
Q psy6192 5 FAKTLANTNDPKWNQSFFYPGIRRSDLKL-RSIEITVWDYTRYG----------------VNDFLGEVIIELSSS 62 (174)
Q Consensus 5 rT~~~~~t~nP~w~E~f~f~~v~~~~~~~-~~L~i~v~d~~~~~----------------~~~~lG~~~~~l~~~ 62 (174)
.|+.+.-+.++.|||.+.|+ +...++.. ..|.|.||+....+ ....||.+.+.|-+.
T Consensus 47 ~T~~~~~~~~~~Wnewl~F~-I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 47 KTSEVSGKNDPVWNETLEFD-INVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred EccccCCCCccccceeEEcc-cchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 45555555679999999998 88877764 67889999976432 146899998888653
No 254
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=95.32 E-value=0.041 Score=39.90 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=46.6
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCC--CceeEEEEEeCCc
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELSS 143 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~--~~~iG~~~l~l~~ 143 (174)
++|.+...+.+|.|+|++-.. ++.+.....-|.++++....-.+ ...+|...++|-.
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~-lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLP-IPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEe-cChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 688899999999999999998 99998888999998887543321 2578988888854
No 255
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.16 E-value=0.061 Score=42.67 Aligned_cols=71 Identities=20% Similarity=0.461 Sum_probs=54.4
Q ss_pred ccccccCCCCCccccEEEeCcccc-----CCCCcceEEEEEEeCC-CCCCCceeEEEEEeCCcC---CCC---CcCceee
Q psy6192 87 LSKTLANTNDPKWNQSFFYPGIRR-----SDLKLRSIEITVWDYT-RYGVNDFLGEVIIELSSS---LCT---DEPEWFY 154 (174)
Q Consensus 87 kT~~~~~t~~P~wne~~~f~~~~~-----~~~~~~~l~i~v~d~~-~~~~~~~iG~~~l~l~~~---~~~---~~~~W~~ 154 (174)
.|-....+..|.||-.+.+. +.. ..++...|.+++|..+ ..+..+.||++.|+|.+. ..+ ....||+
T Consensus 32 ~TDpv~~~~~p~f~teL~WE-~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~ 110 (340)
T PF12416_consen 32 ETDPVPHTESPQFNTELAWE-CDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYK 110 (340)
T ss_pred eecCCCCCCCceeecceeee-ccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeE
Confidence 45566678889999888887 432 2345578999999887 556788999999999998 444 4569999
Q ss_pred cccC
Q psy6192 155 LTKH 158 (174)
Q Consensus 155 L~~~ 158 (174)
|.+-
T Consensus 111 LL~~ 114 (340)
T PF12416_consen 111 LLSS 114 (340)
T ss_pred cccc
Confidence 9884
No 256
>PLN02352 phospholipase D epsilon
Probab=95.10 E-value=0.041 Score=47.81 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=43.2
Q ss_pred cCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC--CCceEEeccc
Q psy6192 10 ANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD--EPEWFYLTKH 76 (174)
Q Consensus 10 ~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~--~~~w~~L~~~ 76 (174)
.+.-||.|+|.|... +.... ...+.|.|-| .-.+||.+.++..++.... ...|+++...
T Consensus 53 ~~~~~p~w~e~f~i~-~ah~~--~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~ 113 (758)
T PLN02352 53 SHEYDRVWNQTFQIL-CAHPL--DSTITITLKT-----KCSILGRFHIQAHQIVTEASFINGFFPLIME 113 (758)
T ss_pred CCCCCCccccceeEE-eeeec--CCcEEEEEec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccC
Confidence 455699999988776 44333 2458899977 2579999999999887653 3459998654
No 257
>KOG3837|consensus
Probab=95.06 E-value=0.028 Score=45.18 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=56.8
Q ss_pred CCccccccCCCCCccccEEEeCccccCC---------CCcceEEEEEEeCCCC-CCCceeEEEEEeCCcCCCC-CcCcee
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSD---------LKLRSIEITVWDYTRY-GVNDFLGEVIIELSSSLCT-DEPEWF 153 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~---------~~~~~l~i~v~d~~~~-~~~~~iG~~~l~l~~~~~~-~~~~W~ 153 (174)
+.||.+++.|.+|.|+|.|-.. +.... .....+.|++|....+ ++|.++|.+.+.+.-+... ..+..+
T Consensus 405 k~kt~vik~t~SPdfde~fkln-i~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~ 483 (523)
T KOG3837|consen 405 KLKTDVIKVTPSPDFDEDFKLN-IRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYL 483 (523)
T ss_pred cCccceeeCCCCCCcccceeee-ccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhce
Confidence 6789999999999999999987 64311 1235688999987654 6788999999999876655 556778
Q ss_pred ecccCC
Q psy6192 154 YLTKHK 159 (174)
Q Consensus 154 ~L~~~~ 159 (174)
+|.++.
T Consensus 484 ~l~DGR 489 (523)
T KOG3837|consen 484 PLKDGR 489 (523)
T ss_pred eccccc
Confidence 887743
No 258
>KOG3837|consensus
Probab=95.00 E-value=0.029 Score=45.13 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=53.7
Q ss_pred ceEeceeecCCCCCccCceEEcCCcCcCc---------CCcceEEEEEEeCCCC-CCCceEEEEEEecccccCC-CCCce
Q psy6192 2 FKEFAKTLANTNDPKWNQSFFYPGIRRSD---------LKLRSIEITVWDYTRY-GVNDFLGEVIIELSSSLCT-DEPEW 70 (174)
Q Consensus 2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~---------~~~~~L~i~v~d~~~~-~~~~~lG~~~~~l~~~~~~-~~~~w 70 (174)
++.+|.+++.|.+|.|+|.|... +.... ..+..+.|++|+...+ ++|.++|.+.+.|..+... ..++.
T Consensus 404 qk~kt~vik~t~SPdfde~fkln-i~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~ 482 (523)
T KOG3837|consen 404 QKLKTDVIKVTPSPDFDEDFKLN-IRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEY 482 (523)
T ss_pred ccCccceeeCCCCCCcccceeee-ccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhc
Confidence 56789999999999999988775 43311 1124588999997765 6789999999999876543 23446
Q ss_pred EEeccc
Q psy6192 71 FYLTKH 76 (174)
Q Consensus 71 ~~L~~~ 76 (174)
++|.+.
T Consensus 483 ~~l~DG 488 (523)
T KOG3837|consen 483 LPLKDG 488 (523)
T ss_pred eecccc
Confidence 666543
No 259
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.83 E-value=0.12 Score=37.69 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=43.2
Q ss_pred EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCC-C---CCceEEEEEEec
Q psy6192 4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY-G---VNDFLGEVIIEL 59 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~-~---~~~~lG~~~~~l 59 (174)
.+|.+...+.+|.|+|++... ++.+......|.|.+++...- . ....+|.+-++|
T Consensus 55 ~~S~V~Yh~~~P~W~EtIKl~-lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 55 YKSVIYYQVDKPKWFETFKVA-IPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred EEEEEEeecCCCCCceeEEEe-cChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 577787888899999999998 999999889999999876532 1 124677777776
No 260
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.76 E-value=0.1 Score=37.37 Aligned_cols=57 Identities=16% Similarity=0.363 Sum_probs=40.8
Q ss_pred ccccccCCCCCccccEEEeCccccCCC-CcceEEEEEEeCCCCC----------------CCceeEEEEEeCCcC
Q psy6192 87 LSKTLANTNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYG----------------VNDFLGEVIIELSSS 144 (174)
Q Consensus 87 kT~~~~~t~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~----------------~~~~iG~~~l~l~~~ 144 (174)
.|+...-+..+.|||.+.|+ +...++ .+..|.|+||+..... ....||.+.+.+-+.
T Consensus 47 ~T~~~~~~~~~~Wnewl~F~-I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 47 KTSEVSGKNDPVWNETLEFD-INVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred EccccCCCCccccceeEEcc-cchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 34443334669999999999 876665 4477999999865322 135899999998774
No 261
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.74 E-value=0.08 Score=38.58 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=45.9
Q ss_pred CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCC-C---CceeEEEEEeCC
Q psy6192 86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG-V---NDFLGEVIIELS 142 (174)
Q Consensus 86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~-~---~~~iG~~~l~l~ 142 (174)
++|-+...+.+|.|+|++-.. ++.+...+.-|.++++...... + ...+|...++|-
T Consensus 55 ~~S~V~Yh~~~P~W~EtIKl~-lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 55 YKSVIYYQVDKPKWFETFKVA-IPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred EEEEEEeecCCCCCceeEEEe-cChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 688888889999999999998 9999888899999998765321 1 246898888885
No 262
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.71 E-value=0.11 Score=36.63 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=41.0
Q ss_pred eceeecCCCCCccCceEEcCCcCcCcCCc-ceEEEEEEeCCCCC----CCceEEEEEEecccc
Q psy6192 5 FAKTLANTNDPKWNQSFFYPGIRRSDLKL-RSIEITVWDYTRYG----VNDFLGEVIIELSSS 62 (174)
Q Consensus 5 rT~~~~~t~nP~w~E~f~f~~v~~~~~~~-~~L~i~v~d~~~~~----~~~~lG~~~~~l~~~ 62 (174)
.|+.+.. .++.|||.+.|+ +...++.. ..|.|.+|+...-+ ....+|.+.+.|-+.
T Consensus 46 ~T~~v~~-~~~~WnEwL~fp-I~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 46 NTQRVPC-SNPRWNEWLDYD-IYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EecccCC-CCCccceeEEcc-cchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECC
Confidence 3444443 579999999998 88877764 67999999976422 235799999988653
No 263
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=94.59 E-value=0.12 Score=37.16 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=40.8
Q ss_pred eceeecCCCCCccCceEEcCCcCcCcCCc-ceEEEEEEeCCCCC----------------CCceEEEEEEeccc
Q psy6192 5 FAKTLANTNDPKWNQSFFYPGIRRSDLKL-RSIEITVWDYTRYG----------------VNDFLGEVIIELSS 61 (174)
Q Consensus 5 rT~~~~~t~nP~w~E~f~f~~v~~~~~~~-~~L~i~v~d~~~~~----------------~~~~lG~~~~~l~~ 61 (174)
+|..+.-+.+|.|||.+.|+ +...++.. ..|.|.||+....+ .+..||.+.+.|-+
T Consensus 49 ~T~~~~~~~~~~WnEwL~f~-I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 49 RTSPKPFTEEVLWNTWLEFD-IKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred eeeccCCCCCccccccEECc-cccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEc
Confidence 56666666789999999998 88877764 67999999974321 24567777777654
No 264
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=94.54 E-value=0.1 Score=37.64 Aligned_cols=57 Identities=9% Similarity=0.178 Sum_probs=37.3
Q ss_pred EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCC-C--ceEEEEEEeccc
Q psy6192 4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV-N--DFLGEVIIELSS 61 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~-~--~~lG~~~~~l~~ 61 (174)
..|.+..++.+|.|+|+|..+ ++.+......|.|.+++...-.. . ..+|.+.++|-.
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~-LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQ-LPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEE-E-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEE-cCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 467777788899999999998 88888778889999998664321 1 689999999976
No 265
>KOG1265|consensus
Probab=94.46 E-value=0.03 Score=48.97 Aligned_cols=57 Identities=19% Similarity=0.410 Sum_probs=44.1
Q ss_pred ceEeceee-cCCCCCccCc-eEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192 2 FKEFAKTL-ANTNDPKWNQ-SFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 64 (174)
Q Consensus 2 ~k~rT~~~-~~t~nP~w~E-~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~ 64 (174)
++.||+++ -++.||+|+| .|+|..|-..++. .|+|.||+.. ..+||.=.+++..+..
T Consensus 738 k~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA--~lRiavyeEg----gK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 738 KEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELA--SLRIAVYEEG----GKFIGQRILPVDGLNA 796 (1189)
T ss_pred hhhhhccccCCCCCcccccCCcccceecccchh--heeeeeeccC----CceeeeeccchhcccC
Confidence 45678877 4788999996 7899877777765 6999999877 3689988888876543
No 266
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=94.06 E-value=0.15 Score=36.77 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=40.4
Q ss_pred ccccccCCCCCccccEEEeCccccCCC-CcceEEEEEEeCCCCC----------------CCceeEEEEEeCCcC
Q psy6192 87 LSKTLANTNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYG----------------VNDFLGEVIIELSSS 144 (174)
Q Consensus 87 kT~~~~~t~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~----------------~~~~iG~~~l~l~~~ 144 (174)
+|+.+.-+.+|.|||.+.|+ +...++ .+..|.|+||+..... .+..||.+.+.|-+-
T Consensus 49 ~T~~~~~~~~~~WnEwL~f~-I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 49 RTSPKPFTEEVLWNTWLEFD-IKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred eeeccCCCCCccccccEECc-cccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcC
Confidence 45555455679999999999 876665 4478999999863211 134688888888763
No 267
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=93.82 E-value=0.15 Score=35.78 Aligned_cols=64 Identities=19% Similarity=0.429 Sum_probs=47.0
Q ss_pred CceEeceeecCCCCCccCceEEcCCcCcCcCC-----------cceEEEEEEeCCCCCCCceEEEEEEecccccCC
Q psy6192 1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLK-----------LRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 65 (174)
Q Consensus 1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~-----------~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~ 65 (174)
||+++|+.+..+.+|.|+|.|-|+ +..+... ...+.+.|.-.+..+...++|+-.++-..+...
T Consensus 44 ~QRF~S~~Vp~~~eP~f~e~Flf~-l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s 118 (156)
T PF15627_consen 44 GQRFRSKPVPCACEPDFNEEFLFE-LPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS 118 (156)
T ss_pred CceEecCCcccccCCCCCCcEEEE-ecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhcc
Confidence 578899999999999999999998 6655421 134667776667666667888877776655443
No 268
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=93.45 E-value=0.27 Score=35.31 Aligned_cols=55 Identities=9% Similarity=0.130 Sum_probs=42.3
Q ss_pred cccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCC-----CCCceeEEEEEeCCc
Q psy6192 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY-----GVNDFLGEVIIELSS 143 (174)
Q Consensus 88 T~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~-----~~~~~iG~~~l~l~~ 143 (174)
+.+.....+|.|+|.+-.. +|.......-|.+++++...- .....+|.+.++|-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~-LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQ-LPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEe-cCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3344444899999999998 887766778899999986633 235689999999975
No 269
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.88 E-value=0.27 Score=35.11 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=37.6
Q ss_pred CCCccccEEEeCccccCCC-CcceEEEEEEeCCCCC---------CCceeEEEEEeCCcC
Q psy6192 95 NDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYG---------VNDFLGEVIIELSSS 144 (174)
Q Consensus 95 ~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~---------~~~~iG~~~l~l~~~ 144 (174)
..+.|||.+.|+ +...++ .+..|.|++|+..... ....||.+.+.|-+.
T Consensus 61 ~~~~Wnewl~F~-i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 61 PRVVWDEWIEFP-IPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred ccccccceEECc-cchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 358899999999 765554 4478999999876543 346899999999774
No 270
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=92.83 E-value=0.58 Score=33.61 Aligned_cols=55 Identities=9% Similarity=0.125 Sum_probs=41.8
Q ss_pred ceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCC-----CCCceEEEEEEeccc
Q psy6192 6 AKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY-----GVNDFLGEVIIELSS 61 (174)
Q Consensus 6 T~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~-----~~~~~lG~~~~~l~~ 61 (174)
|.++....+|.|+|+|... ++.+......|.|.+++...- .....+|.+-++|-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~-LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQ-LPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEe-cCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 4444444899999999998 877776778899999986632 335789998888854
No 271
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.75 E-value=0.26 Score=35.16 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=37.5
Q ss_pred CCccCceEEcCCcCcCcCC-cceEEEEEEeCCCCC---------CCceEEEEEEecccc
Q psy6192 14 DPKWNQSFFYPGIRRSDLK-LRSIEITVWDYTRYG---------VNDFLGEVIIELSSS 62 (174)
Q Consensus 14 nP~w~E~f~f~~v~~~~~~-~~~L~i~v~d~~~~~---------~~~~lG~~~~~l~~~ 62 (174)
.+.|||.+.|+ +...++. ...|.|.+|+....+ ....||.+.+.|-+.
T Consensus 62 ~~~Wnewl~F~-i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 62 RVVWDEWIEFP-IPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred cccccceEECc-cchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 57799999998 7776665 367999999987654 357899999988653
No 272
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=92.38 E-value=0.43 Score=34.41 Aligned_cols=58 Identities=7% Similarity=0.065 Sum_probs=46.1
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCC------CceeEEEEEeCCc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV------NDFLGEVIIELSS 143 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~------~~~iG~~~l~l~~ 143 (174)
...|.+...+.+|.|+|.+-.. +|.......-|.++.++.+.-.+ ...+|...++|-.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~-LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIK-LPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEE-cCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 3678888899999999999998 88887777889999998654322 2468988888854
No 273
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=91.09 E-value=1.1 Score=32.23 Aligned_cols=56 Identities=9% Similarity=0.124 Sum_probs=42.9
Q ss_pred EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCC------CCceEEEEEEecc
Q psy6192 4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG------VNDFLGEVIIELS 60 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~------~~~~lG~~~~~l~ 60 (174)
..|.+...+.+|.|+|++-.. ++.......-|.|+.++.+--. ....+|.+-++|-
T Consensus 56 ~~S~V~yHnk~P~f~DEiKi~-LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 56 AYTAVTYHNKSPDFYDEIKIK-LPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred EEEEEEEeCCCCcccceEEEE-cCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 467888888899999999987 8888877788999998854321 1356888777774
No 274
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=90.86 E-value=1.3 Score=32.14 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=42.6
Q ss_pred EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCC--C-------CCceEEEEEEecc
Q psy6192 4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--G-------VNDFLGEVIIELS 60 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~--~-------~~~~lG~~~~~l~ 60 (174)
..|.+...+.+|.|.|++-.. ++.......-|.|..|+.+-- . ....+|.+-++|-
T Consensus 58 ~~s~V~yh~k~P~f~dEiKI~-LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl 122 (185)
T cd08697 58 AYAAVLHHNQNPEFYDEIKIE-LPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLL 122 (185)
T ss_pred EEEEEEEcCCCCccceeEEEe-cCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeee
Confidence 467788888999999999987 888888888899999986521 1 1245777766664
No 275
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=90.40 E-value=0.71 Score=36.72 Aligned_cols=73 Identities=19% Similarity=0.428 Sum_probs=53.6
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcC-----cCCcceEEEEEEeCC-CCCCCceEEEEEEecccc---cCC---CCCce
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRS-----DLKLRSIEITVWDYT-RYGVNDFLGEVIIELSSS---LCT---DEPEW 70 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~-----~~~~~~L~i~v~d~~-~~~~~~~lG~~~~~l~~~---~~~---~~~~w 70 (174)
..-|-.+..+-.|.||-.+.++ +... .+++..|++.+|-.+ .-+..+.+|.+.++|..+ ... ....|
T Consensus 30 ~l~TDpv~~~~~p~f~teL~WE-~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W 108 (340)
T PF12416_consen 30 SLETDPVPHTESPQFNTELAWE-CDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKW 108 (340)
T ss_pred eeeecCCCCCCCceeecceeee-ccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCe
Confidence 3456667788899999988886 4332 233466889999988 557789999999999987 333 34459
Q ss_pred EEeccc
Q psy6192 71 FYLTKH 76 (174)
Q Consensus 71 ~~L~~~ 76 (174)
|+|.+.
T Consensus 109 ~~LL~~ 114 (340)
T PF12416_consen 109 YKLLSS 114 (340)
T ss_pred eEcccc
Confidence 998754
No 276
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=90.16 E-value=0.59 Score=30.20 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=30.4
Q ss_pred eceeecCCCCCccCceEEcCCcCcCcCCc-ceEEEEEEeCCC
Q psy6192 5 FAKTLANTNDPKWNQSFFYPGIRRSDLKL-RSIEITVWDYTR 45 (174)
Q Consensus 5 rT~~~~~t~nP~w~E~f~f~~v~~~~~~~-~~L~i~v~d~~~ 45 (174)
.|+.+.-...+.|||-+.|+ +...++.. ..|.|.+|+...
T Consensus 52 ~t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 52 STSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIYEVKN 92 (100)
T ss_pred EecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEEEeeC
Confidence 45555555568999999998 88877764 678899998653
No 277
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=90.09 E-value=0.49 Score=30.59 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=27.5
Q ss_pred cccccCCCCCccccEEEeCccccCCC-CcceEEEEEEeCC
Q psy6192 88 SKTLANTNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYT 126 (174)
Q Consensus 88 T~~~~~t~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~ 126 (174)
|+.+.-...+.|||.+.|+ +...++ .+..|.|++|+..
T Consensus 53 t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 53 TSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIYEVK 91 (100)
T ss_pred ecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEEEee
Confidence 3333334558999999999 876665 4478999999864
No 278
>KOG2060|consensus
Probab=89.76 E-value=0.092 Score=41.75 Aligned_cols=71 Identities=24% Similarity=0.377 Sum_probs=54.9
Q ss_pred eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEe-CCCCCCCceEEEEEEecccccCCC--CCceEEecccc
Q psy6192 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWD-YTRYGVNDFLGEVIIELSSSLCTD--EPEWFYLTKHT 77 (174)
Q Consensus 3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d-~~~~~~~~~lG~~~~~l~~~~~~~--~~~w~~L~~~~ 77 (174)
|++|+...+|++|-|.....|. +......|.+.+|- +.+.-++.|+|.+++-+.++.... ...||+|.+..
T Consensus 308 k~ktk~A~kT~~plyqq~l~f~----~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 308 KKKTKSARKTLDPLYQQQLSFD----QSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred ccccccccccCchhhhhhhhhc----cCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 5789999999999999888876 23345779998874 666667889999999999887665 34599996543
No 279
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=89.69 E-value=1.3 Score=31.25 Aligned_cols=64 Identities=19% Similarity=0.408 Sum_probs=47.9
Q ss_pred CCccccccCCCCCccccEEEeCccccCCC-----------CcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDL-----------KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE 149 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~-----------~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~ 149 (174)
+++|+.+..+.+|.|+|.|-|. +..... ....+.+-|.-.+..+...++|.-.++.......+.
T Consensus 46 RF~S~~Vp~~~eP~f~e~Flf~-l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~ 120 (156)
T PF15627_consen 46 RFRSKPVPCACEPDFNEEFLFE-LPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN 120 (156)
T ss_pred eEecCCcccccCCCCCCcEEEE-ecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCC
Confidence 5789999999999999999998 764431 115566777666666666889998888887766643
No 280
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=89.34 E-value=1.3 Score=32.15 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=45.9
Q ss_pred CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCC--C-------CCceeEEEEEeCCc
Q psy6192 85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--G-------VNDFLGEVIIELSS 143 (174)
Q Consensus 85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~--~-------~~~~iG~~~l~l~~ 143 (174)
...|.+...+.+|.|+|.+-.. +|.......-|.++.++.+.. . ....+|...++|-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~-LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIE-LPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEe-cCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 3678888899999999999998 888877778899999986522 1 12468988888864
No 281
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=85.54 E-value=0.9 Score=31.06 Aligned_cols=52 Identities=21% Similarity=0.500 Sum_probs=37.0
Q ss_pred CCCccCceEEcCCcCc------CcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC
Q psy6192 13 NDPKWNQSFFYPGIRR------SDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 65 (174)
Q Consensus 13 ~nP~w~E~f~f~~v~~------~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~ 65 (174)
-.-.|||+|.+. +.. ..+....+.|.|+....-++...+|.+.++|+++...
T Consensus 50 ~~v~w~e~~~~~-~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~ 107 (143)
T PF10358_consen 50 GKVQWNEEFSFP-CTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANE 107 (143)
T ss_pred cEEEEeeEEEEE-EEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCc
Confidence 346799998776 322 2245567889998875434447999999999987754
No 282
>KOG0906|consensus
Probab=83.63 E-value=3.7 Score=35.44 Aligned_cols=45 Identities=29% Similarity=0.580 Sum_probs=36.7
Q ss_pred ccccEEEeCccccCCC-CcceEEEEEEeCCCCCCCceeEEEEEeCCc
Q psy6192 98 KWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYGVNDFLGEVIIELSS 143 (174)
Q Consensus 98 ~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~ 143 (174)
.|||.+.++ +..+++ .++.+.|++||......-.|+|...+.+..
T Consensus 78 ~wnewLtlp-vky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 78 NWNEWLTLP-VKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred chhhhhccc-cccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 499999998 866665 447799999998877788899998887765
No 283
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=80.43 E-value=2 Score=29.25 Aligned_cols=53 Identities=21% Similarity=0.494 Sum_probs=38.0
Q ss_pred CCCCccccEEEeCcccc------CCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC
Q psy6192 94 TNDPKWNQSFFYPGIRR------SDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147 (174)
Q Consensus 94 t~~P~wne~~~f~~~~~------~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~ 147 (174)
+..-.|||.|.+. +.. ..+....+.|.|+....-++...+|.+.|+|.+....
T Consensus 49 ~~~v~w~e~~~~~-~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~ 107 (143)
T PF10358_consen 49 NGKVQWNEEFSFP-CTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANE 107 (143)
T ss_pred ccEEEEeeEEEEE-EEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCc
Confidence 4557999999987 421 2256677889998764333336899999999997764
No 284
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=71.95 E-value=4.5 Score=26.56 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=32.1
Q ss_pred EeceeecCCCCCccCceEEcCCcCcCcC-----CcceEEEEEEeCCCCCCCceEEEEEEecccccCC
Q psy6192 4 EFAKTLANTNDPKWNQSFFYPGIRRSDL-----KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 65 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~-----~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~ 65 (174)
+.|.++. ..+|.+|-+-.|. |..+++ +...+.|+++.--. .....+|.+++++..+...
T Consensus 13 q~Tpvv~-G~~p~y~fts~y~-V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~ 76 (107)
T PF11618_consen 13 QTTPVVR-GLNPFYDFTSQYK-VTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLES 76 (107)
T ss_dssp EE---EE-SSS----EEEEEE-E--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH-
T ss_pred eccccee-CCCccceeEEEEE-EEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcC
Confidence 4566665 5699999999997 777665 34678899987552 3468899999999887643
No 285
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=64.01 E-value=11 Score=24.20 Aligned_cols=41 Identities=22% Similarity=0.419 Sum_probs=28.2
Q ss_pred CCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccc
Q psy6192 13 NDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61 (174)
Q Consensus 13 ~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~ 61 (174)
.+..|++.|.+. + +. .+.|.|.||-.|. ..+-|..-+.|.+
T Consensus 31 s~q~WDQ~Fti~-L--dR--sRELEI~VywrD~---RslCav~~lrLEd 71 (98)
T cd08687 31 SNQAWDQSFTLE-L--ER--SRELEIAVYWRDW---RSLCAVKFLKLED 71 (98)
T ss_pred ccccccceeEEE-e--ec--ccEEEEEEEEecc---hhhhhheeeEhhh
Confidence 378899999886 3 22 4679999998774 3455555566655
No 286
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=55.18 E-value=35 Score=24.16 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=34.7
Q ss_pred CCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCC
Q psy6192 95 NDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL 145 (174)
Q Consensus 95 ~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~ 145 (174)
..-.|||.|.+. +.. .- ..|.|.||.... ..+..|+.+.|++-...
T Consensus 62 F~v~f~~~f~v~-i~~--~P-esi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 62 FRVHFNEIFNVQ-ITR--WP-ESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eEEeccCEEEEE-Eec--CC-CEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 346678888877 532 33 789999999776 67889999999976643
No 287
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=52.13 E-value=33 Score=24.25 Aligned_cols=46 Identities=13% Similarity=0.261 Sum_probs=33.3
Q ss_pred CCccCceEEcCCcCcCcCC-cceEEEEEEeCCCCCCCceEEEEEEecc
Q psy6192 14 DPKWNQSFFYPGIRRSDLK-LRSIEITVWDYTRYGVNDFLGEVIIELS 60 (174)
Q Consensus 14 nP~w~E~f~f~~v~~~~~~-~~~L~i~v~d~~~~~~~~~lG~~~~~l~ 60 (174)
.-.||-.|.+. +...... --.|.++||..|.++++.+.|...+.|-
T Consensus 56 ~~~f~~P~d~~-~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 56 VAVFNHPFDLH-FKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred ceEEeccEEEE-EEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEeC
Confidence 35688766555 3333322 2579999999999999999999877774
No 288
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=42.77 E-value=57 Score=23.07 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=32.8
Q ss_pred CCccccEEEeCccccCCCCc-ceEEEEEEeCCCCCCCceeEEEEEeCC
Q psy6192 96 DPKWNQSFFYPGIRRSDLKL-RSIEITVWDYTRYGVNDFLGEVIIELS 142 (174)
Q Consensus 96 ~P~wne~~~f~~~~~~~~~~-~~l~i~v~d~~~~~~~~~iG~~~l~l~ 142 (174)
.-.||--|.+. +....... -.|.++||..|..+++.+.|...+.+-
T Consensus 56 ~~~f~~P~d~~-~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 56 VAVFNHPFDLH-FKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred ceEEeccEEEE-EEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEeC
Confidence 35688766665 44333322 579999999999999999988666653
No 289
>KOG1329|consensus
Probab=34.02 E-value=58 Score=29.45 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=52.2
Q ss_pred CCccccccCC-CCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192 85 SNLSKTLANT-NDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK 157 (174)
Q Consensus 85 ~~kT~~~~~t-~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~ 157 (174)
..+|...... .+|.|.+.|. +...... ..+.+++-+.+..+....+|.+.++...+..+ ....|+++..
T Consensus 151 ~~~t~~~~~f~e~s~~~f~~~---~~~~h~~-g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~ 221 (887)
T KOG1329|consen 151 YRRTHVIYEFLENSRWSFSFD---IGFAHKA-GYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILD 221 (887)
T ss_pred hhchhhhhcccccchhhhhcc---ccccccc-cEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeec
Confidence 4566666666 7799998876 4444444 67888888877776678999999999988875 5678999776
No 290
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=33.96 E-value=73 Score=22.06 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=37.8
Q ss_pred CceEeceeecCCCCCccCceEEcCCcC---------cCcCCcceEEEEEEeCCCCCCCceEEEEEEeccccc
Q psy6192 1 GFKEFAKTLANTNDPKWNQSFFYPGIR---------RSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL 63 (174)
Q Consensus 1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~---------~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~ 63 (174)
|+-++|+.....--=.++|.|.|.++- .+.+....+.|+++...... ...|...+-.++++.
T Consensus 30 g~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 30 GQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYYEENTRDFL 100 (140)
T ss_pred ccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEEeccccceE
Confidence 455666666444444467888887321 12334567888888866543 567777766666544
No 291
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=33.38 E-value=1.2e+02 Score=21.49 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=30.7
Q ss_pred ccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccc
Q psy6192 16 KWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61 (174)
Q Consensus 16 ~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~ 61 (174)
.|||.|.+. +.. .. ..|.+.||.... ..+..|+.+.+++-.
T Consensus 65 ~f~~~f~v~-i~~--~P-esi~l~i~E~~~-~~~~~la~v~vpvP~ 105 (168)
T PF15625_consen 65 HFNEIFNVQ-ITR--WP-ESIKLEIYEKSG-LSDRLLAEVFVPVPG 105 (168)
T ss_pred eccCEEEEE-Eec--CC-CEEEEEEEEccC-ccceEEEEEEeeCCC
Confidence 467877776 543 33 579999998887 678899999998754
No 292
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=33.27 E-value=85 Score=19.08 Aligned_cols=23 Identities=17% Similarity=0.577 Sum_probs=19.1
Q ss_pred eEEEEEEeCCCCCCCceEEEEEE
Q psy6192 35 SIEITVWDYTRYGVNDFLGEVII 57 (174)
Q Consensus 35 ~L~i~v~d~~~~~~~~~lG~~~~ 57 (174)
-..|.+|+.+.+..|++|++...
T Consensus 13 ~~~V~L~e~d~~~~Ddll~~~~T 35 (80)
T PF01060_consen 13 NVKVKLWEDDYFDPDDLLDETKT 35 (80)
T ss_pred CCEEEEEECCCCCCCceeEEEEE
Confidence 46699999998788999998755
No 293
>KOG0906|consensus
Probab=32.55 E-value=62 Score=28.43 Aligned_cols=44 Identities=30% Similarity=0.571 Sum_probs=35.0
Q ss_pred ccCceEEcCCcCcCcCC-cceEEEEEEeCCCCCCCceEEEEEEecc
Q psy6192 16 KWNQSFFYPGIRRSDLK-LRSIEITVWDYTRYGVNDFLGEVIIELS 60 (174)
Q Consensus 16 ~w~E~f~f~~v~~~~~~-~~~L~i~v~d~~~~~~~~~lG~~~~~l~ 60 (174)
.|||=+.++ +...++. ...|.|.+||...-..-.++|...+.+.
T Consensus 78 ~wnewLtlp-vky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf 122 (843)
T KOG0906|consen 78 NWNEWLTLP-VKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLF 122 (843)
T ss_pred chhhhhccc-cccccccccceEEEEEEecCCCceeeeccceEEEee
Confidence 499988887 7776665 3679999999887777889998877764
No 294
>KOG4028|consensus
Probab=29.49 E-value=66 Score=22.02 Aligned_cols=27 Identities=15% Similarity=0.428 Sum_probs=21.5
Q ss_pred ceEEEEEEeCCCCCCCceEEEEEEecc
Q psy6192 34 RSIEITVWDYTRYGVNDFLGEVIIELS 60 (174)
Q Consensus 34 ~~L~i~v~d~~~~~~~~~lG~~~~~l~ 60 (174)
-+|.+.+|.+|.+++..+-|.-.+.+-
T Consensus 74 prl~~qiw~~dnfgr~eiagyg~~~lp 100 (175)
T KOG4028|consen 74 PRLHFQIWHHDNFGRCEIAGYGFCHLP 100 (175)
T ss_pred ceeeeeeeecCcccceeecccceEecc
Confidence 468899999999999888877555443
No 295
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=28.09 E-value=1.3e+02 Score=24.31 Aligned_cols=44 Identities=16% Similarity=0.402 Sum_probs=32.6
Q ss_pred cceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC---CcCceeecccCC
Q psy6192 115 LRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT---DEPEWFYLTKHK 159 (174)
Q Consensus 115 ~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~---~~~~W~~L~~~~ 159 (174)
+.+|.+.++-.. +.+..-||.+.++++.-... +...||.+...|
T Consensus 114 DnTLkI~lfKKk-Lvkk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDG 160 (508)
T PTZ00447 114 DETLRVDLFTTK-LTKKVHIGQIKIDINASVISKSFPKNEWFVCFKDG 160 (508)
T ss_pred CceEEEEEEecc-ccceeEEEEEEecccHHHHhccCCccceEEEecCC
Confidence 378999998755 44667899999999873322 567999996644
No 296
>PHA02708 hypothetical protein; Provisional
Probab=26.71 E-value=1.2e+02 Score=20.66 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=21.3
Q ss_pred ceEEEEEEeCCCCCCCceeEEEEEeC
Q psy6192 116 RSIEITVWDYTRYGVNDFLGEVIIEL 141 (174)
Q Consensus 116 ~~l~i~v~d~~~~~~~~~iG~~~l~l 141 (174)
...+++|||...+..+.-|+++.+--
T Consensus 96 ~v~tV~v~DVr~L~~d~el~CvAv~G 121 (148)
T PHA02708 96 HVVTVTVYDVRGLRDDFELTCVAVVG 121 (148)
T ss_pred EEEEEEEEEhhccCCCceEEEEEEec
Confidence 45679999999998888899887754
No 297
>KOG0904|consensus
Probab=25.45 E-value=47 Score=30.16 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=28.5
Q ss_pred EeceeecCCCCCccCceEEcCCcCcCcCCc-ceEEEEEEeC
Q psy6192 4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKL-RSIEITVWDY 43 (174)
Q Consensus 4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~-~~L~i~v~d~ 43 (174)
+.|.-+..+.+|.||+.+.|+ +...++.. ..|-|.||.-
T Consensus 382 ~sTs~v~~~~~~~Wn~~leFD-I~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 382 RSTSEVPGCSFPLWNEWLEFD-IYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred cccCCCCCccchhccceeEee-eecCCCChhhhheeeeeEe
Confidence 455556667899999999998 87777764 4566777764
Done!