RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6192
(174 letters)
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 93.0 bits (231), Expect = 2e-23
Identities = 34/207 (16%), Positives = 72/207 (34%), Gaps = 55/207 (26%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS---SL 63
K T +P +N++F + + ++L R + +V+D+ R+ +D +G+V+++
Sbjct: 60 KVHRKTLNPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ 118
Query: 64 CTDEPEWFYLTKHTL------ELQFPLS----------------NL-------------- 87
D P W + + EL F L NL
Sbjct: 119 PPDRPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVK 178
Query: 88 --------------SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDF 133
+ NT +P +N++ + + ++ + I V DY G N+
Sbjct: 179 ASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEV 237
Query: 134 LGEVIIELSSSLCTDEPEWFYLTKHKN 160
+G + ++ W + +
Sbjct: 238 IGVCRVGPEAADPHGREHWAEMLANPR 264
Score = 58.3 bits (141), Expect = 7e-11
Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS---S 144
+K T +P +N++F + + ++L R + +V+D+ R+ +D +G+V+++
Sbjct: 59 TKVHRKTLNPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAE 117
Query: 145 LCTDEPEWFYLTKHKNS 161
D P W + + +
Sbjct: 118 QPPDRPLWRDILEGGSE 134
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 89.9 bits (223), Expect = 2e-22
Identities = 34/190 (17%), Positives = 73/190 (38%), Gaps = 54/190 (28%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 59 KVHRKTLNPVFNEQFTFK-VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 117
Query: 67 EPEWFY------------LTKHTLELQFPLS------------NL--------------- 87
E + L L++ + NL
Sbjct: 118 VTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKI 177
Query: 88 -------------SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFL 134
+ NT +P +N+SF + + ++ + +TV DY + G ND +
Sbjct: 178 HLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAI 236
Query: 135 GEVIIELSSS 144
G+V + +S+
Sbjct: 237 GKVFVGYNST 246
Score = 60.2 bits (146), Expect = 2e-11
Identities = 14/78 (17%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 58 TKVHRKTLNPVFNEQFTFK-VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 116
Query: 148 DEPEWFYLTKHKNSGSNP 165
E + +
Sbjct: 117 HVTEEWRDLQSAEKEEQE 134
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 82.8 bits (205), Expect = 6e-21
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT 65
K + + +P+WNQ+ Y I L +++E+TVWDY R+ NDFLGEV+I+LSS S
Sbjct: 69 KYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD 128
Query: 66 DEPEWFYLTKHT 77
+ P W+ L + T
Sbjct: 129 NTPRWYPLKEQT 140
Score = 82.4 bits (204), Expect = 7e-21
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLC 146
+K + + +P+WNQ+ Y I L +++E+TVWDY R+ NDFLGEV+I+LSS S
Sbjct: 68 TKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL 127
Query: 147 TDEPEWFYLTKHKNS 161
+ P W+ L + S
Sbjct: 128 DNTPRWYPLKEQTES 142
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 80.4 bits (199), Expect = 4e-20
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--GVNDFLGEVIIELSSSL 145
+KT+ T +PKWNQ+F Y + R + + R +EIT+WD R ++FLGE++IEL ++L
Sbjct: 59 TKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL 118
Query: 146 CTDEPEWFYL 155
DEP W+ L
Sbjct: 119 LDDEPHWYKL 128
Score = 79.6 bits (197), Expect = 5e-20
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--GVNDFLGEVIIELSSSLC 64
KT+ T +PKWNQ+F Y + R + + R +EIT+WD R ++FLGE++IEL ++L
Sbjct: 60 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 119
Query: 65 TDEPEWFYL 73
DEP W+ L
Sbjct: 120 DDEPHWYKL 128
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 79.3 bits (196), Expect = 1e-19
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--GVNDFLGEVIIELSSSL 145
+KT+ T +PKWNQ+F Y + R + + R +EIT+WD R ++FLGE++IEL ++L
Sbjct: 62 TKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL 121
Query: 146 CTDEPEWFYLTKHKNSGSN 164
DEP W+ L H + S+
Sbjct: 122 LDDEPHWYKLQTHDSGPSS 140
Score = 78.1 bits (193), Expect = 3e-19
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--GVNDFLGEVIIELSSSLC 64
KT+ T +PKWNQ+F Y + R + + R +EIT+WD R ++FLGE++IEL ++L
Sbjct: 63 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 122
Query: 65 TDEPEWFYLTKH 76
DEP W+ L H
Sbjct: 123 DDEPHWYKLQTH 134
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 77.4 bits (191), Expect = 6e-19
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLC 146
+K +P WN++F + G + R + + V DY R+ ND +GEV I L+ L
Sbjct: 65 TKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLT 124
Query: 147 TDEPEWFYLTKHKNS 161
+ W L S
Sbjct: 125 QMQTFWKDLKPSGPS 139
Score = 77.0 bits (190), Expect = 9e-19
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT 65
K +P WN++F + G + R + + V DY R+ ND +GEV I L+ L
Sbjct: 66 KVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQ 125
Query: 66 DEPEWFYLTKHT 77
+ W L
Sbjct: 126 MQTFWKDLKPSG 137
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 76.9 bits (190), Expect = 8e-19
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT 65
K T +P +N+ Y G + L+ R ++++V N FLG + + L +L
Sbjct: 61 KISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSK 120
Query: 66 DEPEWFYLTKHT 77
+ +W+ LT T
Sbjct: 121 ETVKWYQLTAAT 132
Score = 76.6 bits (189), Expect = 1e-18
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLC 146
+K T +P +N+ Y G + L+ R ++++V N FLG + + L +L
Sbjct: 60 TKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLS 119
Query: 147 TDEPEWFYLT 156
+ +W+ LT
Sbjct: 120 KETVKWYQLT 129
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 77.0 bits (190), Expect = 1e-18
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+KTL NT +P WN++ Y GI D++ +++ I+V D ++G N+F+GE L L
Sbjct: 70 TKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL-KKLKA 128
Query: 148 DEPEWFYL 155
++ + F +
Sbjct: 129 NQRKNFNI 136
Score = 76.2 bits (188), Expect = 2e-18
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
KTL NT +P WN++ Y GI D++ +++ I+V D ++G N+F+GE L L +
Sbjct: 71 KTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL-KKLKAN 129
Query: 67 EPEWFYL 73
+ + F +
Sbjct: 130 QRKNFNI 136
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 76.6 bits (189), Expect = 1e-18
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
++ L T DP ++++F + GI + ++ ++ T+ + R+ +D +GEV+I LS +
Sbjct: 62 TRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121
Query: 148 DEP--EWFYLTKHKNSG 162
+ + +SG
Sbjct: 122 EGKMLMNREIISGPSSG 138
Score = 71.6 bits (176), Expect = 9e-17
Identities = 16/65 (24%), Positives = 35/65 (53%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
+ L T DP ++++F + GI + ++ ++ T+ + R+ +D +GEV+I LS ++
Sbjct: 63 RVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122
Query: 67 EPEWF 71
Sbjct: 123 GKMLM 127
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 76.7 bits (189), Expect = 1e-18
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+KT+ + +P+WN++F + ++ SD R + + +WD+ NDF+G + +S
Sbjct: 72 TKTIKCSLNPEWNETFRFQ-LKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKA 129
Query: 148 DEPEWFYLTKHK 159
WF L +
Sbjct: 130 GVDGWFKLLSQE 141
Score = 74.7 bits (184), Expect = 7e-18
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
KT+ + +P+WN++F + ++ SD R + + +WD+ NDF+G + +S
Sbjct: 73 KTIKCSLNPEWNETFRFQ-LKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 130
Query: 67 EPEWFYLTKH 76
WF L
Sbjct: 131 VDGWFKLLSQ 140
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 76.2 bits (188), Expect = 2e-18
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+KT+ +T +P+WN+SF + + K R + + +WD+ R NDF+G + +S +
Sbjct: 57 TKTIRSTLNPQWNESFTFKL--KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKM 114
Query: 148 DEPEWFYLTKHK 159
W+ L +
Sbjct: 115 PASGWYKLLNQE 126
Score = 74.3 bits (183), Expect = 8e-18
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
KT+ +T +P+WN+SF + + K R + + +WD+ R NDF+G + +S +
Sbjct: 58 KTIRSTLNPQWNESFTFKL--KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMP 115
Query: 67 EPEWFYLTKHT 77
W+ L
Sbjct: 116 ASGWYKLLNQE 126
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 72.0 bits (177), Expect = 8e-17
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
+T +P ++++ Y I S L R+++ +VW + R+G N FLGE I++ S
Sbjct: 66 SIKRDTVNPLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDK 124
Query: 67 E-PEWFYLTKHTLE 79
+ L
Sbjct: 125 KLDHCLPLHGKISA 138
Score = 70.8 bits (174), Expect = 2e-16
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+ +T +P ++++ Y I S L R+++ +VW + R+G N FLGE I++ S
Sbjct: 65 TSIKRDTVNPLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLD 123
Query: 148 DE-PEWFYL 155
+ L
Sbjct: 124 KKLDHCLPL 132
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 71.7 bits (176), Expect = 1e-16
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+ T P + + + + I + + R++ +TV D+ ++ + +G+V + L
Sbjct: 72 TGVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLV 130
Query: 148 DEPEWFYLTKHKNSGS 163
W+ S
Sbjct: 131 KGGHWWKALIPSGPSS 146
Score = 69.8 bits (171), Expect = 6e-16
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
T P + + + + I + + R++ +TV D+ ++ + +G+V + L
Sbjct: 73 GVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVK 131
Query: 67 EPEWFY 72
W+
Sbjct: 132 GGHWWK 137
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 69.7 bits (171), Expect = 6e-16
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLC 146
+K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 73 TKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131
Query: 147 TDEPEWFYL 155
EW L
Sbjct: 132 HVTEEWRDL 140
Score = 68.9 bits (169), Expect = 1e-15
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT 65
K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 74 KVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 132
Query: 66 DEPEWFYL 73
EW L
Sbjct: 133 VTEEWRDL 140
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 69.4 bits (170), Expect = 1e-15
Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLC 146
+K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 81 TKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 139
Query: 147 TDEPEWFYLTKHK 159
EW L +
Sbjct: 140 HVTEEWRDLQSAE 152
Score = 68.2 bits (167), Expect = 3e-15
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT 65
K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 82 KVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 140
Query: 66 DEPEWFYLT 74
EW L
Sbjct: 141 VTEEWRDLQ 149
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 69.4 bits (170), Expect = 1e-15
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
++ L ++ +N+ F+ + L +++ + V R + + LG I L+ +
Sbjct: 85 TRPLDASDTLVFNEVFWVS-MSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRS 143
Query: 148 DE--PEWFYL 155
E W+ L
Sbjct: 144 GERSTRWYNL 153
Score = 68.6 bits (168), Expect = 2e-15
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
+ L ++ +N+ F+ + L +++ + V R + + LG I L+ +
Sbjct: 86 RPLDASDTLVFNEVFWVS-MSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSG 144
Query: 67 E--PEWFYL 73
E W+ L
Sbjct: 145 ERSTRWYNL 153
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 68.2 bits (167), Expect = 2e-15
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVND--FLGEVIIELSS-S 144
+ T +P ++QSF + + +++ R++++ V + + D LG+V++ L+S
Sbjct: 64 THVSKKTLNPVFDQSFDFS-VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEE 122
Query: 145 LCTDEPEWFYLTKHKNSGS 163
L +W+ LT+ S
Sbjct: 123 LAKGWTQWYDLTEDSGPSS 141
Score = 66.6 bits (163), Expect = 9e-15
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVND--FLGEVIIELSS-SL 63
T +P ++QSF + + +++ R++++ V + + D LG+V++ L+S L
Sbjct: 65 HVSKKTLNPVFDQSFDFS-VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEEL 123
Query: 64 CTDEPEWFYLTKHT 77
+W+ LT+ +
Sbjct: 124 AKGWTQWYDLTEDS 137
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 67.4 bits (165), Expect = 4e-15
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLC 146
+ W + P + +L ++ +T+ R+ + GE+ + L S+
Sbjct: 63 TALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVP 121
Query: 147 TDEPEWFYL-TKHKNSG 162
+W L T +SG
Sbjct: 122 LGAAQWGELKTSGPSSG 138
Score = 66.6 bits (163), Expect = 9e-15
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT 65
W + P + +L ++ +T+ R+ + GE+ + L S+
Sbjct: 64 ALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL 122
Query: 66 DEPEWFYLTKHT 77
+W L
Sbjct: 123 GAAQWGELKTSG 134
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 65.5 bits (160), Expect = 3e-14
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 89 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 148
+ T +P++N+ FFY I+ SDL +S++I+VWDY ND++G + +S+
Sbjct: 79 QIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG-ER 136
Query: 149 EPEWFYLTKHK 159
W+ K+K
Sbjct: 137 LKHWYECLKNK 147
Score = 64.7 bits (158), Expect = 7e-14
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
+ T +P++N+ FFY I+ SDL +S++I+VWDY ND++G + +S+
Sbjct: 79 QIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG-ER 136
Query: 67 EPEWFYLTKH 76
W+ K+
Sbjct: 137 LKHWYECLKN 146
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 63.6 bits (155), Expect = 2e-13
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG-VNDFLGEVIIELSSSLC 146
++T+ + DP +++ FF+P ++ D + + + +TVW+ + +G + + S L
Sbjct: 67 TQTVPDCRDPAFHEHFFFP-VQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSLLT 124
Query: 147 TDEP--EWFYLTKHK 159
D+ W+YL
Sbjct: 125 PDKEISGWYYLLGEH 139
Score = 62.8 bits (153), Expect = 3e-13
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG-VNDFLGEVIIELSSSLCT 65
+T+ + DP +++ FF+P ++ D + + + +TVW+ + +G + + S L
Sbjct: 68 QTVPDCRDPAFHEHFFFP-VQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTP 125
Query: 66 DEP--EWFYLTKH 76
D+ W+YL
Sbjct: 126 DKEISGWYYLLGE 138
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 62.0 bits (151), Expect = 6e-13
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
T + +N+ F + I L+ S+E V D R N+ +G +++ ++
Sbjct: 72 HVKKCTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 126
Score = 62.0 bits (151), Expect = 6e-13
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 89 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 144
T + +N+ F + I L+ S+E V D R N+ +G +++ ++
Sbjct: 72 HVKKCTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 126
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 59.7 bits (145), Expect = 3e-12
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+K + N +P WN+ + S+ I V D+ G N +G + L L
Sbjct: 42 TKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVAL-KDLTG 100
Query: 148 DEPE--WFYLTKHKNSGSNPT 166
D+ + L N T
Sbjct: 101 DQSRSLPYKLISLLNEKGQDT 121
Score = 57.4 bits (139), Expect = 2e-11
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
K + N +P WN+ + S+ I V D+ G N +G + L L D
Sbjct: 43 KKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVAL-KDLTGD 101
Query: 67 EPEWFYLTKHTLE 79
+ +L
Sbjct: 102 QSRSLPYKLISLL 114
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 59.2 bits (144), Expect = 5e-12
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
T+ +P+WN+ F +P D +E+TV+D DFLG+V I L S+
Sbjct: 50 HTVYKNLNPEWNKVFTFPIKDIHD----VLEVTVFDEDGDKPPDFLGKVAIPL-LSIRDG 104
Query: 67 EPEWFYLTKHTLE 79
+P + L LE
Sbjct: 105 QPNCYVLKNKDLE 117
Score = 57.7 bits (140), Expect = 2e-11
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+ T+ +P+WN+ F +P D +E+TV+D DFLG+V I L S+
Sbjct: 49 THTVYKNLNPEWNKVFTFPIKDIHD----VLEVTVFDEDGDKPPDFLGKVAIPL-LSIRD 103
Query: 148 DEPEWFYLT----KHKNSGS 163
+P + L + G
Sbjct: 104 GQPNCYVLKNKDLEQAFKGV 123
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 59.0 bits (143), Expect = 9e-12
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 144
+ NT +P +N+SF + + ++ + +TV DY + G ND +G+V + +S+
Sbjct: 66 TTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121
Score = 59.0 bits (143), Expect = 1e-11
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
NT +P +N+SF + + ++ + +TV DY + G ND +G+V + +S+
Sbjct: 67 TIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 58.1 bits (141), Expect = 1e-11
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
T +P +N+SF + I L+ +I ITV D + ND +G++ + S
Sbjct: 58 VTKKRNLNPIFNESFAFD-IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG 112
Score = 58.1 bits (141), Expect = 1e-11
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 89 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 144
T +P +N+SF + I L+ +I ITV D + ND +G++ + S
Sbjct: 58 VTKKRNLNPIFNESFAFD-IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG 112
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 55.9 bits (135), Expect = 1e-10
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
KT+ + +PKWN+ + + + V+D R +DFLG+V + L +
Sbjct: 63 KTIKKSLNPKWNEEILFRVHPQQ----HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTEN 118
Query: 67 EPEWFYLTKHTLELQ 81
T L
Sbjct: 119 PRLERPYTFKDFVLH 133
Score = 55.5 bits (134), Expect = 1e-10
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+KT+ + +PKWN+ + + + V+D R +DFLG+V + L L T
Sbjct: 62 TKTIKKSLNPKWNEEILFRVHPQQ----HRLLFEVFDENRLTRDDFLGQVDVPL-YPLPT 116
Query: 148 DEPEWFYLTKHKN 160
+ P K+
Sbjct: 117 ENPRLERPYTFKD 129
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 56.3 bits (136), Expect = 1e-10
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVW-DYTRYGVNDFLGEVIIELSS-SL 145
++ T DP + QS + + + +++ VW DY R F+G I L L
Sbjct: 72 TRIARKTLDPLYQQSLVFDE----SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDL 127
Query: 146 CTDEPEWFYLT 156
+ W+ L
Sbjct: 128 SSMVIGWYKLF 138
Score = 56.3 bits (136), Expect = 1e-10
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVW-DYTRYGVNDFLGEVIIELSS-SLC 64
+ T DP + QS + + + +++ VW DY R F+G I L L
Sbjct: 73 RIARKTLDPLYQQSLVFDE----SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLS 128
Query: 65 TDEPEWFYLT 74
+ W+ L
Sbjct: 129 SMVIGWYKLF 138
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 52.6 bits (126), Expect = 3e-09
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
+ NTN PKW Q S + VW + + LG +++ +L
Sbjct: 73 EKCNNTNSPKWKQPLTVIVTPVS-----KLHFRVWSHQTLKSDVLLGTAALDIYETL--- 124
Query: 67 EPEWFYLTKHTLELQFPLSN 86
+ L + + LQ
Sbjct: 125 KSNNMKLEEVVVTLQLGGDK 144
Score = 52.2 bits (125), Expect = 4e-09
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
++ NTN PKW Q S + VW + + LG +++ +L +
Sbjct: 72 TEKCNNTNSPKWKQPLTVIVTPVS-----KLHFRVWSHQTLKSDVLLGTAALDIYETLKS 126
Query: 148 D----EPEWFYLT-KHKNSGSNPTIDNNV 171
+ E L + D ++
Sbjct: 127 NNMKLEEVVVTLQLGGDKEPTETIGDLSI 155
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 52.1 bits (125), Expect = 3e-09
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 16/81 (19%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDY-----------TRYGVNDFLGE 136
+KT+ +P W ++F + SD I++ V D + +DFLG+
Sbjct: 53 TKTIYGNLNPVWEENFHFECHNSSD----RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQ 108
Query: 137 VIIELSSSLCTDEPEWFYLTK 157
IIE+ +L + W+ L K
Sbjct: 109 TIIEV-RTLSGEMDVWYNLDK 128
Score = 51.7 bits (124), Expect = 4e-09
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDY-----------TRYGVNDFLGEV 55
KT+ +P W ++F + SD I++ V D + +DFLG+
Sbjct: 54 KTIYGNLNPVWEENFHFECHNSSD----RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQT 109
Query: 56 IIELSSSLCTDEPEWFYLTKHTLE 79
IIE+ +L + W+ L K T +
Sbjct: 110 IIEV-RTLSGEMDVWYNLDKRTDK 132
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 51.8 bits (124), Expect = 3e-09
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+ T TN P W+ F + IE+ V+ G +DF+ I+ L
Sbjct: 54 TATKQKTNSPAWHDEFVTD-VCNGR----KIELAVFHDAPIGYDDFVANCTIQFEELLQN 108
Query: 148 DE---PEWFYLTKH 158
+W L
Sbjct: 109 GSRHFEDWIDLEPE 122
Score = 50.6 bits (121), Expect = 8e-09
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
T TN P W+ F + IE+ V+ G +DF+ I+ L
Sbjct: 55 ATKQKTNSPAWHDEFVTD-VCNGR----KIELAVFHDAPIGYDDFVANCTIQFEELLQNG 109
Query: 67 E---PEWFYLTKH 76
+W L
Sbjct: 110 SRHFEDWIDLEPE 122
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 50.8 bits (122), Expect = 6e-09
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
+ N +P WN++F + + +EIT+ D +++ LG + SS+
Sbjct: 46 RHFNNDINPVWNETFEFI---LDPNQENVLEITLMDANY-VMDETLGTATFTV-SSMKVG 100
Query: 67 EP--EWFYLTKHT---LELQFPLSN 86
E F + T LE+ +++
Sbjct: 101 EKKEVPFIFNQVTEMVLEMSLEVAS 125
Score = 50.4 bits (121), Expect = 9e-09
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
++ N +P WN++F + + +EIT+ D +++ LG + SS+
Sbjct: 45 TRHFNNDINPVWNETFEFI---LDPNQENVLEITLMDANY-VMDETLGTATFTV-SSMKV 99
Query: 148 DEP--EWFYLTKHKN 160
E F +
Sbjct: 100 GEKKEVPFIFNQVTE 114
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 52.6 bits (125), Expect = 9e-09
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
+ N N+P+W + + S + + VWD +D LG S
Sbjct: 430 GVVWNNNNPRWTDKMDFENVLLSTGG--PLRVQVWDADYGWDDDLLGSCDRSPHSG---F 484
Query: 67 EPEWFYLTKHTLELQF 82
L ++ +
Sbjct: 485 HEVTCELNHGRVKFSY 500
Score = 52.2 bits (124), Expect = 1e-08
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+ + N N+P+W + + S + + VWD +D LG S
Sbjct: 429 TGVVWNNNNPRWTDKMDFENVLLSTGG--PLRVQVWDADYGWDDDLLGSCDRSPHSG--- 483
Query: 148 DEPEWFYL 155
L
Sbjct: 484 FHEVTCEL 491
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 50.7 bits (121), Expect = 2e-08
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+KT+ + +PKWN+ + + + I V+D R +DFLG+V + L L T
Sbjct: 50 TKTIKKSLNPKWNEEILFRVLPQR----HRILFEVFDENRLTRDDFLGQVDVPL-YPLPT 104
Query: 148 DEPEWFYLTKHKN 160
+ P K+
Sbjct: 105 ENPRMERPYTFKD 117
Score = 49.9 bits (119), Expect = 2e-08
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
KT+ + +PKWN+ + + + I V+D R +DFLG+V + L +
Sbjct: 51 KTIKKSLNPKWNEEILFRVLPQR----HRILFEVFDENRLTRDDFLGQVDVPLYPLPTEN 106
Query: 67 EPEWFYLTKHTLELQ 81
T L
Sbjct: 107 PRMERPYTFKDFVLH 121
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 49.7 bits (119), Expect = 2e-08
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVND---FLGEVIIELSSS 144
+ T+ NT DPKWNQ + + SI I+VW++ + FLG V + ++
Sbjct: 43 TDTVKNTLDPKWNQHYDLYVGKTD-----SITISVWNHKKIHKKQGAGFLGCVRLLSNAI 97
Query: 145 LCTDEPEWFYLTKHKNSGSNP 165
+ + L K + S+
Sbjct: 98 SRLKDTGYQRLDLCKLNPSDT 118
Score = 48.9 bits (117), Expect = 3e-08
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVND---FLGEVIIELSSSL 63
T+ NT DPKWNQ + + SI I+VW++ + FLG V + ++
Sbjct: 44 DTVKNTLDPKWNQHYDLYVGKTD-----SITISVWNHKKIHKKQGAGFLGCVRLLSNAIS 98
Query: 64 CTDEPEWFYLT 74
+ + L
Sbjct: 99 RLKDTGYQRLD 109
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 50.0 bits (119), Expect = 2e-08
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 10/76 (13%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+ T TN P +N+ F + +E+ V+ T G + F+ ++ L T
Sbjct: 76 TSTKQKTNKPTYNEEFCAN-VTDG----GHLELAVFHETPLGYDHFVANCTLQFQELLRT 130
Query: 148 DEPE-----WFYLTKH 158
W L
Sbjct: 131 TGASDTFEGWVDLEPE 146
Score = 49.2 bits (117), Expect = 5e-08
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
T TN P +N+ F + +E+ V+ T G + F+ ++ L T
Sbjct: 77 STKQKTNKPTYNEEFCAN-VTDG----GHLELAVFHETPLGYDHFVANCTLQFQELLRTT 131
Query: 67 EPE-----WFYLTKH 76
W L
Sbjct: 132 GASDTFEGWVDLEPE 146
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 45.0 bits (107), Expect = 8e-07
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS--SL 145
+ P+WN++F + + ++ ++D +D +GE I L
Sbjct: 47 NVAEGMGTTPEWNETFIFTVSEGTT----ELKAKIFDKDVGTEDDAVGEATIPLEPVFVE 102
Query: 146 CTDEPEWFYLTKHKNS 161
+ P + + K +
Sbjct: 103 GSIPPTAYNVVKDEEY 118
Score = 43.9 bits (104), Expect = 2e-06
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 13/81 (16%)
Query: 11 NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS--SLCTDEP 68
P+WN++F + + ++ ++D +D +GE I L + P
Sbjct: 52 MGTTPEWNETFIFTVSEGTT----ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPP 107
Query: 69 EWFYLTKH-------TLELQF 82
+ + K + L F
Sbjct: 108 TAYNVVKDEEYKGEIWVALSF 128
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 44.2 bits (104), Expect = 2e-06
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 88 SKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 146
S T+A + P W Q F + R + + VW+ + +G V I L +
Sbjct: 36 STTIAVRGSQPSWEQDFMFEINRLDL----GLTVEVWNKGLIW-DTMVGTVWIPLRTIRQ 90
Query: 147 TDE---PEWFYLTKHKNSGSNPT 166
++E EW L +
Sbjct: 91 SNEEGPGEWLTLDSQAIMADSEI 113
Score = 43.8 bits (103), Expect = 3e-06
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 11 NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE--- 67
+ P W Q F + R + + VW+ + +G V I L + ++E
Sbjct: 42 RGSQPSWEQDFMFEINRLDL----GLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGP 96
Query: 68 PEWFYLTKHTL 78
EW L +
Sbjct: 97 GEWLTLDSQAI 107
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 42.7 bits (100), Expect = 1e-05
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 9/85 (10%)
Query: 88 SKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 146
S T+A + P W Q F + R + + VW+ + +G V I L +
Sbjct: 45 STTIAVRGSQPSWEQDFMFEINRLDL----GLTVEVWNKGLIW-DTMVGTVWIPLRTIRQ 99
Query: 147 TDE---PEWFYLTKHKNSGSNPTID 168
++E EW L +
Sbjct: 100 SNEEGPGEWLTLDSQAIMADSEICG 124
Score = 40.4 bits (94), Expect = 6e-05
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 11 NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE--- 67
+ P W Q F + R + + VW+ + +G V I L + ++E
Sbjct: 51 RGSQPSWEQDFMFEINRLDL----GLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGP 105
Query: 68 PEWFYL 73
EW L
Sbjct: 106 GEWLTL 111
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 35.0 bits (79), Expect = 0.008
Identities = 6/81 (7%), Positives = 21/81 (25%)
Query: 93 NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEW 152
+ + W + F + + + + ++G V + +++ E
Sbjct: 51 SGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQ 110
Query: 153 FYLTKHKNSGSNPTIDNNVHS 173
+Y +
Sbjct: 111 WYPVTLPTGSGGSGGMGSGGG 131
Score = 34.6 bits (78), Expect = 0.013
Identities = 8/100 (8%), Positives = 24/100 (24%)
Query: 11 NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEW 70
+ + W + F + + + + ++G V + +++ E
Sbjct: 51 SGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQ 110
Query: 71 FYLTKHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRR 110
+Y S + + R
Sbjct: 111 WYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVR 150
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 34.5 bits (78), Expect = 0.013
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 11 NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
N +P+W+ F + + DL L + V DY NDF+G+ I +S
Sbjct: 546 NGFNPRWDMEFEFE-VTVPDLAL--VRFMVEDYDSSSKNDFIGQSTIPWNS 593
Score = 34.5 bits (78), Expect = 0.013
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 93 NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
N +P+W+ F + + DL L + V DY NDF+G+ I +S
Sbjct: 546 NGFNPRWDMEFEFE-VTVPDLAL--VRFMVEDYDSSSKNDFIGQSTIPWNS 593
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 34.5 bits (78), Expect = 0.013
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
++ N +P WN++F + + L EIT+ D ++ LG +SS
Sbjct: 60 TRHFNNDINPVWNETFEFILDPNQENVL---EITLMDANYVM-DETLGTATFTVSSMKVG 115
Query: 148 DEPEWFYLTKH 158
++ E ++
Sbjct: 116 EKKEVPFIFNQ 126
Score = 34.1 bits (77), Expect = 0.018
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
+ N +P WN++F + + L EIT+ D ++ LG +SS +
Sbjct: 61 RHFNNDINPVWNETFEFILDPNQENVL---EITLMDANYVM-DETLGTATFTVSSMKVGE 116
Query: 67 EPEWFYLTKH 76
+ E ++
Sbjct: 117 KKEVPFIFNQ 126
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 32.7 bits (74), Expect = 0.051
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
++T+ +T +PKWN + + DL + +T++D ++ +DFLG I ++
Sbjct: 423 TRTIQDTLNPKWNFNCQFFI---KDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAK 475
Score = 31.9 bits (72), Expect = 0.092
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
+T+ +T +PKWN + + DL + +T++D ++ +DFLG I ++
Sbjct: 424 RTIQDTLNPKWNFNCQFFI---KDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAK 475
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 2.0
Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 67/153 (43%)
Query: 33 LRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHTLELQFP--LSNLSKT 90
R + ++ +G E ++ + ++ +F + L+ QF L ++
Sbjct: 6 TRPLTLS------HG--SL--EHVLLVPTAS------FFIAS--QLQEQFNKILPEPTEG 47
Query: 91 LANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS------ 144
A ++P + +L V FLG V + S
Sbjct: 48 FAADDEPT------------TPAEL--------------VGKFLGYVSSLVEPSKVGQFD 81
Query: 145 ----LCTDEPEWFYLTKHKNSGSNPTIDNNVHS 173
LC E E YL N++H+
Sbjct: 82 QVLNLCLTEFENCYLE-----------GNDIHA 103
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 27.0 bits (59), Expect = 2.6
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 75 KHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFL 134
K +E + + K T P W+ + F I + R ++I V D +
Sbjct: 41 KEYVESENGQMYIQKK--PTMYPPWDST-FDAHINKG----RVMQIIVKGKN----VDLI 89
Query: 135 GEVIIELSS 143
E +EL S
Sbjct: 90 SETTVELYS 98
Score = 26.2 bits (57), Expect = 4.2
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 9/50 (18%)
Query: 12 TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
T P W+ + F I + R ++I V D + E +EL S
Sbjct: 58 TMYPPWDST-FDAHINKG----RVMQIIVKGKN----VDLISETTVELYS 98
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 27.6 bits (60), Expect = 2.8
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 11 NTNDPKWN-QSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
N DP ++ + F + + DL + + I V + F+G ++ L
Sbjct: 695 NGMDPYYDEKVFVFKKVVLPDLAV--VRIIVSEEN----GKFIGHRVMPLDG 740
Score = 27.6 bits (60), Expect = 2.8
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 93 NTNDPKWN-QSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
N DP ++ + F + + DL + + I V + F+G ++ L
Sbjct: 695 NGMDPYYDEKVFVFKKVVLPDLAV--VRIIVSEEN----GKFIGHRVMPLDG 740
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase,
mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella
enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Length = 259
Score = 27.0 bits (60), Expect = 3.6
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 18/69 (26%)
Query: 43 YTRYGVNDFL------GEVIIELSSSLCTDEPEWFY-LTKHTLELQFPLSNLSKTLANTN 95
Y+ +G+ DF+ G VI E+F H ++ F ++ + +
Sbjct: 43 YSVHGIKDFIICCGYKGYVIK-----------EYFANYFLHMSDVTFHMAENRMEVHHKR 91
Query: 96 DPKWNQSFF 104
WN +
Sbjct: 92 VEPWNVTLV 100
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein
binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Length = 126
Score = 25.5 bits (55), Expect = 7.2
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 15/53 (28%)
Query: 12 TNDPKWNQSF---FYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
T P+W +F Y G R I+I + + + EV + +S
Sbjct: 53 TMYPEWKSTFDAHIYEG--------RVIQIVLMRAA----EEPVSEVTVGVSV 93
Score = 25.5 bits (55), Expect = 7.2
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 15/53 (28%)
Query: 94 TNDPKWNQSF---FYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
T P+W +F Y G R I+I + + + EV + +S
Sbjct: 53 TMYPEWKSTFDAHIYEG--------RVIQIVLMRAA----EEPVSEVTVGVSV 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.426
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,710,908
Number of extensions: 146017
Number of successful extensions: 388
Number of sequences better than 10.0: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 105
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)