RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6192
(174 letters)
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 64.3 bits (156), Expect = 2e-14
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELSSSLC 64
KT+ T +PKWNQ+F Y + R + + R +EIT+WD R ++FLGE++IEL ++L
Sbjct: 56 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 115
Query: 65 TDEPEWFYL 73
DEP W+ L
Sbjct: 116 DDEPHWYKL 124
Score = 64.3 bits (156), Expect = 2e-14
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 89 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELSSSLC 146
KT+ T +PKWNQ+F Y + R + + R +EIT+WD R ++FLGE++IEL ++L
Sbjct: 56 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 115
Query: 147 TDEPEWFYL 155
DEP W+ L
Sbjct: 116 DDEPHWYKL 124
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 55.5 bits (133), Expect = 5e-11
Identities = 17/76 (22%), Positives = 37/76 (48%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
++ L T DP ++++F + GI + ++ ++ T+ + R+ +D +GEV+I LS +
Sbjct: 62 TRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121
Query: 148 DEPEWFYLTKHKNSGS 163
+ S
Sbjct: 122 EGKMLMNREIISGPSS 137
Score = 53.2 bits (127), Expect = 3e-10
Identities = 17/73 (23%), Positives = 36/73 (49%)
Query: 1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS 60
K + L T DP ++++F + GI + ++ ++ T+ + R+ +D +GEV+I LS
Sbjct: 57 KHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLS 116
Query: 61 SSLCTDEPEWFYL 73
++
Sbjct: 117 GIELSEGKMLMNR 129
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 53.2 bits (127), Expect = 4e-10
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+ T + +N+ F + I L+ S+E V D R N+ +G +++ ++ +
Sbjct: 56 THVKKCTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA-TAEGS 113
Query: 148 DEPEWFYLTKHKN 160
W +
Sbjct: 114 GGGHWKEICDFPR 126
Score = 51.6 bits (123), Expect = 1e-09
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
T + +N+ F + I L+ S+E V D R N+ +G +++ ++ +
Sbjct: 57 HVKKCTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA-TAEGSG 114
Query: 67 EPEWFYLTKH 76
W +
Sbjct: 115 GGHWKEICDF 124
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 50.1 bits (119), Expect = 4e-09
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+KT+ + +P+WN++F + + K R + + +WD+ NDF+G + +S
Sbjct: 56 TKTIKCSLNPEWNETFRFQL--KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA 113
Query: 148 DEPEWFYLTKHK 159
WF L +
Sbjct: 114 GVDGWFKLLSQE 125
Score = 48.2 bits (114), Expect = 2e-08
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
KT+ + +P+WN++F + + K R + + +WD+ NDF+G + +S
Sbjct: 57 KTIKCSLNPEWNETFRFQL--KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 114
Query: 67 EPEWFYLTKH 76
WF L
Sbjct: 115 VDGWFKLLSQ 124
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 48.7 bits (115), Expect = 2e-08
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT 65
K + + +P+WNQ+ Y I L +++E+TVWDY R+ NDFLGEV+I+LSS S
Sbjct: 69 KYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD 128
Query: 66 DEPEWFYLTKHT 77
+ P W+ L + T
Sbjct: 129 NTPRWYPLKEQT 140
Score = 48.4 bits (114), Expect = 2e-08
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLC 146
+K + + +P+WNQ+ Y I L +++E+TVWDY R+ NDFLGEV+I+LSS S
Sbjct: 68 TKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL 127
Query: 147 TDEPEWFYLTKHKNS 161
+ P W+ L + S
Sbjct: 128 DNTPRWYPLKEQTES 142
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 48.3 bits (114), Expect = 3e-08
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
++ T +P++N+ FFY I+ SDL +S++I+VWDY ND++G + S+
Sbjct: 56 TQIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLG-ISAKGE 113
Query: 148 DEPEWFYLTKHKN 160
W+ K+K+
Sbjct: 114 RLKHWYECLKNKD 126
Score = 46.7 bits (110), Expect = 8e-08
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
K + T +P++N+ FFY I+ SDL +S++I+VWDY ND++G + S+
Sbjct: 53 KHKTQIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLG-ISA 110
Query: 63 LCTDEPEWFYLTKH 76
W+ K+
Sbjct: 111 KGERLKHWYECLKN 124
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 48.3 bits (114), Expect = 3e-08
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+ NT +P +N+SF + + ++ + +TV DY + G ND +G+V + +S
Sbjct: 66 TTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY-NSTGA 123
Query: 148 DEPEWFYLTKHKNS 161
+ W + +
Sbjct: 124 ELRHWSDMLANPRR 137
Score = 47.5 bits (112), Expect = 6e-08
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
NT +P +N+SF + + ++ + +TV DY + G ND +G+V + +S+
Sbjct: 67 TIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 45.2 bits (106), Expect = 3e-07
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+ NT +P +N++ + + ++ + I V DY G N+ +G + ++
Sbjct: 61 TSIKKNTLNPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH 119
Query: 148 DEPEWFYLTKHKN 160
W + +
Sbjct: 120 GREHWAEMLANPR 132
Score = 45.2 bits (106), Expect = 4e-07
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
K NT +P +N++ + + ++ + I V DY G N+ +G + ++
Sbjct: 58 KRKTSIKKNTLNPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA 116
Query: 63 LCTDEPEWFYLTKH 76
W + +
Sbjct: 117 DPHGREHWAEMLAN 130
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 44.7 bits (105), Expect = 5e-07
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 73 TKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131
Query: 148 DE-PEWFYL 155
EW L
Sbjct: 132 HVTEEWRDL 140
Score = 44.0 bits (103), Expect = 9e-07
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
K T +P +N+ F + + S+L +++ + V+D+ R+ +D +GE + +++
Sbjct: 74 KVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 132
Query: 67 E-PEWFYL 73
EW L
Sbjct: 133 VTEEWRDL 140
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 43.0 bits (100), Expect = 2e-06
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC- 146
+K T +P +N++F + + ++L R + +V+D+ R+ +D +G+V+++ L
Sbjct: 57 TKVHRKTLNPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAE 115
Query: 147 --TDEPEWFYLTK 157
D P W + +
Sbjct: 116 QPPDRPLWRDILE 128
Score = 42.6 bits (99), Expect = 2e-06
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC-- 64
K T +P +N++F + + ++L R + +V+D+ R+ +D +G+V+++ L
Sbjct: 58 KVHRKTLNPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ 116
Query: 65 -TDEPEWFYLTK 75
D P W + +
Sbjct: 117 PPDRPLWRDILE 128
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 40.9 bits (95), Expect = 9e-06
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS 60
+ T+ +P+WN+ F +P D +E+TV+D DFLG+V I L
Sbjct: 37 NDRLQTHTVYKNLNPEWNKVFTFPIKDIHD----VLEVTVFDEDGDKPPDFLGKVAIPL- 91
Query: 61 SSLCTDEPEWFYLTKHTLE 79
S+ +P + L LE
Sbjct: 92 LSIRDGQPNCYVLKNKDLE 110
Score = 38.6 bits (89), Expect = 7e-05
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 89 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 148
T+ +P+WN+ F +P D +E+TV+D DFLG+V I L S+
Sbjct: 43 HTVYKNLNPEWNKVFTFPIKDIHD----VLEVTVFDEDGDKPPDFLGKVAIPL-LSIRDG 97
Query: 149 EPEWFYLTKHKNSG 162
+P + L
Sbjct: 98 QPNCYVLKNKDLEQ 111
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 40.5 bits (94), Expect = 1e-05
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 93 NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE--P 150
P+WN++F + + ++ ++D +D +GE I L P
Sbjct: 52 MGTTPEWNETFIFTVSEGT----TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPP 107
Query: 151 EWFYLTKHKNS 161
+ + K +
Sbjct: 108 TAYNVVKDEEY 118
Score = 39.7 bits (92), Expect = 3e-05
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 13/81 (16%)
Query: 11 NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE--P 68
P+WN++F + + ++ ++D +D +GE I L P
Sbjct: 52 MGTTPEWNETFIFTVSEGT----TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPP 107
Query: 69 EWFYLTKH-------TLELQF 82
+ + K + L F
Sbjct: 108 TAYNVVKDEEYKGEIWVALSF 128
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 36.8 bits (84), Expect = 3e-04
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
+ W + P + +L ++ +T+ R+ + GE+ + L +
Sbjct: 63 TALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVP 121
Query: 148 DEPE-WFYLTKHKNS 161
W L S
Sbjct: 122 LGAAQWGELKTSGPS 136
Score = 34.1 bits (77), Expect = 0.003
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 7 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
W + P + +L ++ +T+ R+ + GE+ + L +
Sbjct: 64 ALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL 122
Query: 67 EPE-WFYLTKH 76
W L
Sbjct: 123 GAAQWGELKTS 133
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 35.8 bits (82), Expect = 7e-04
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
++ + N +P WN++F + + +EIT+ D ++ LG + SS
Sbjct: 42 RKRTRHFNNDINPVWNETFEFI---LDPNQENVLEITLMDANYVM-DETLGTATFTV-SS 96
Query: 63 LCTDEP--EWFYLTKHT 77
+ E F + T
Sbjct: 97 MKVGEKKEVPFIFNQVT 113
Score = 35.5 bits (81), Expect = 8e-04
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 93 NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP-- 150
N +P WN++F + + +EIT+ D ++ LG + SS+ E
Sbjct: 50 NDINPVWNETFEFI---LDPNQENVLEITLMDANYVM-DETLGTATFTV-SSMKVGEKKE 104
Query: 151 EWFYLTKHKN 160
F +
Sbjct: 105 VPFIFNQVTE 114
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 34.4 bits (78), Expect = 0.002
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 96 DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL 155
+P+W+ F + + L + V DY NDF+G+ I +S +L
Sbjct: 56 NPRWDMEFEFEV---TVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNS--LKQGYRHVHL 110
Query: 156 TKHKN 160
Sbjct: 111 LSKNG 115
Score = 33.2 bits (75), Expect = 0.006
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 14 DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL 73
+P+W+ F + + L + V DY NDF+G+ I +S +L
Sbjct: 56 NPRWDMEFEFEV---TVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNS--LKQGYRHVHL 110
Query: 74 TKHTLE 79
+
Sbjct: 111 LSKNGD 116
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 34.0 bits (77), Expect = 0.003
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 10/89 (11%)
Query: 1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS 60
G + + NTN PKW Q + VW + + LG +++
Sbjct: 37 GQSKKTEKCNNTNSPKWKQPLTVIVTPV-----SKLHFRVWSHQTLKSDVLLGTAALDIY 91
Query: 61 SSLCTDEPEWFYLTKHTLELQFPLSNLSK 89
+L ++ + + + L +
Sbjct: 92 ETLKSNNMKL-----EEVVVTLQLGGDKE 115
Score = 32.8 bits (74), Expect = 0.007
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 89 KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 148
+ NTN PKW Q + VW + + LG +++ +L ++
Sbjct: 43 EKCNNTNSPKWKQPLTVIVTPV-----SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSN 97
Query: 149 ----EPEWFYLTKHKNSGSN 164
E L +
Sbjct: 98 NMKLEEVVVTLQLGGDKEPT 117
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 334
Score = 25.1 bits (53), Expect = 5.9
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 13 NDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG 47
DPK+ Q ++ G+ + DL ++ W G
Sbjct: 6 TDPKFPQQWYLSGVTQRDLNVKE----AWAQGFTG 36
Score = 25.1 bits (53), Expect = 5.9
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 95 NDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG 129
DPK+ Q ++ G+ + DL ++ W G
Sbjct: 6 TDPKFPQQWYLSGVTQRDLNVKE----AWAQGFTG 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.426
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 694,575
Number of extensions: 30931
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 34
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)