BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6193
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UQ26|RIMS2_HUMAN Regulating synaptic membrane exocytosis protein 2 OS=Homo sapiens
GN=RIMS2 PE=1 SV=2
Length = 1411
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 61 VIWVCILCRKKQELLSKTGQWI-NKGMNSTPQGD-AIMRKIEADMMFEDKRPKLERGT 116
V+WVC LCRK+QE+L+K+G W N G N+ Q D ++R + + ++K+PKL T
Sbjct: 161 VMWVCNLCRKQQEILTKSGAWFYNSGSNTPQQPDQKVLRGLRNEEAPQEKKPKLHEQT 218
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 22/25 (88%)
Query: 19 IPDLSHLTLEERQIIESVMMRQKQE 43
+PDLSHLT EER+II +VM RQK++
Sbjct: 26 MPDLSHLTEEERKIILAVMDRQKKK 50
>sp|Q9JIS1|RIMS2_RAT Regulating synaptic membrane exocytosis protein 2 OS=Rattus
norvegicus GN=Rims2 PE=1 SV=1
Length = 1555
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 19 IPDLSHLTLEERQIIESVMMRQKQEEERELEIMRSACQVYLMV 61
+PDLSHLT EER+II++VM RQK+EEE+E +++ Q + M
Sbjct: 26 MPDLSHLTEEERKIIQAVMDRQKKEEEKEQSVLKKLHQQFEMY 68
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 61 VIWVCILCRKKQELLSKTGQWI-NKGMNSTPQGD-AIMRKIEADMMFEDKRPKLERGT 116
V+WVC LCRK+QE+L+K+G W N G N+ Q D +R + ++ ++K+ KL T
Sbjct: 130 VMWVCNLCRKQQEILTKSGAWFYNSGSNTPQQPDQKALRGLRSEEAPQEKKAKLHEQT 187
>sp|Q22366|RIM_CAEEL Rab-3-interacting molecule unc-10 OS=Caenorhabditis elegans
GN=unc-10 PE=1 SV=2
Length = 1563
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 15 NADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRSACQ 56
+ ++PDLSHL+ EER+IIE+V RQK EE +E +I + A +
Sbjct: 3 DPSMMPDLSHLSAEEREIIENVFKRQKDEEAKETQISQKASE 44
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 62 IWVCILCRKKQELLSKTGQWINKGMNSTPQ 91
IW C LC+K+Q++L+KTG+W P+
Sbjct: 110 IWACSLCQKRQQILAKTGKWFQPEEQPQPK 139
>sp|Q9EQZ7|RIMS2_MOUSE Regulating synaptic membrane exocytosis protein 2 OS=Mus musculus
GN=Rims2 PE=1 SV=1
Length = 1530
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 61 VIWVCILCRKKQELLSKTGQWI-NKGMNSTPQGD-AIMRKIEADMMFEDKRPKLE 113
V+WVC LCRK+QE+L+K+G W N G N+ Q D + R + + ++K+ KL
Sbjct: 170 VMWVCNLCRKQQEILTKSGAWFYNSGSNTLQQPDQKVPRGLRNEEAPQEKKAKLH 224
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 29/34 (85%)
Query: 19 IPDLSHLTLEERQIIESVMMRQKQEEERELEIMR 52
+PDLSHLT EER+II +VM RQK+EEE+E +++
Sbjct: 26 MPDLSHLTEEERKIILAVMDRQKKEEEKEQSVLK 59
>sp|Q9JIR4|RIMS1_RAT Regulating synaptic membrane exocytosis protein 1 OS=Rattus
norvegicus GN=Rims1 PE=1 SV=1
Length = 1615
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 60 MVIWVCILCRKKQELLSKTGQWINKGMNSTPQGDAIM 96
+V+WVC LCRK+QE+L+K+G W P D +
Sbjct: 180 VVMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTL 216
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 19 IPDLSHLTLEERQIIESVMMRQ 40
+PDLSHLT EER II +VM RQ
Sbjct: 22 LPDLSHLTEEERNIIMAVMDRQ 43
>sp|Q86UR5|RIMS1_HUMAN Regulating synaptic membrane exocytosis protein 1 OS=Homo sapiens
GN=RIMS1 PE=1 SV=1
Length = 1692
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Query: 60 MVIWVCILCRKKQELLSKTGQWINKGMNSTPQ 91
+V+WVC LCRK+QE+L+K+G W S PQ
Sbjct: 157 VVMWVCNLCRKQQEILTKSGAWF---FGSGPQ 185
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 19 IPDLSHLTLEERQIIESVMMRQ 40
+PDLSHLT EER II +VM RQ
Sbjct: 22 LPDLSHLTEEERNIIMAVMDRQ 43
>sp|Q99NE5|RIMS1_MOUSE Regulating synaptic membrane exocytosis protein 1 OS=Mus musculus
GN=Rims1 PE=1 SV=2
Length = 1463
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 60 MVIWVCILCRKKQELLSKTGQWINKGMNSTPQGDAIM 96
+V+WVC LCRK+QE+L+K+G W P D +
Sbjct: 180 VVMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTL 216
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 19 IPDLSHLTLEERQIIESVMMRQ 40
+PDLSHLT EER II +VM RQ
Sbjct: 22 LPDLSHLTEEERNIIMAVMDRQ 43
>sp|Q6C030|DPB2_YARLI DNA polymerase epsilon subunit B OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB2 PE=3 SV=1
Length = 652
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 51 MRSA-CQVYLMVIWVCILCRKKQELLSKTGQWINKGMNSTPQGDA---IMRKIEADMMFE 106
M+S +V++++ + K+QE ++ G G++ P G I R++EA M+ E
Sbjct: 268 MKSGDAEVFVVITMGPPVAEKRQETITAYGNMDYLGLHGNPHGSVVRRIERQVEASMLAE 327
Query: 107 DKR 109
+KR
Sbjct: 328 EKR 330
>sp|A2QZ71|MRH4_ASPNC ATP-dependent RNA helicase mrh4, mitochondrial OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=mrh4 PE=3 SV=2
Length = 633
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 1 MCLTEGMVTSMAQTNADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRSACQVYLM 60
+ T ++ S+A+T+ ++ +SHL L+E +S+M R E+ I +SA ++ +
Sbjct: 327 LVATPHLLASIAKTDPYVLSRVSHLVLDE---ADSLMDRSFLPTTTEI-IEKSASSLHKL 382
Query: 61 VIWVCILCRKKQELLSKTGQWINKGMNSTPQGDAIMRKIE 100
++ + R LL K I + +TP AI R+++
Sbjct: 383 ILCSATIPRSLDNLLRKRYPDIRR--LTTPNLHAIPRRVQ 420
>sp|Q9Y2J0|RP3A_HUMAN Rabphilin-3A OS=Homo sapiens GN=RPH3A PE=1 SV=1
Length = 694
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 59 LMVIWVCILCRKKQELLSKTGQWINKGM 86
L +W+C +C +++E+ ++G W KG
Sbjct: 134 LHSVWLCKICIEQREVWKRSGAWFFKGF 161
>sp|O54880|RPH3L_RAT Rab effector Noc2 OS=Rattus norvegicus GN=Rph3al PE=1 SV=1
Length = 302
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 62 IWVCILCRKKQELLSKTGQWINKGM 86
+W+C +C +++E+ ++G W KG+
Sbjct: 135 LWLCKICSEQREVWKRSGAWFYKGL 159
>sp|Q768S4|RPH3L_MOUSE Rab effector Noc2 OS=Mus musculus GN=Rph3al PE=1 SV=1
Length = 302
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 62 IWVCILCRKKQELLSKTGQWINKGM 86
+W+C +C +++E+ ++G W KG+
Sbjct: 135 LWLCKICSEQREVWKRSGAWFYKGL 159
>sp|Q9UNE2|RPH3L_HUMAN Rab effector Noc2 OS=Homo sapiens GN=RPH3AL PE=1 SV=1
Length = 315
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 62 IWVCILCRKKQELLSKTGQWINKGM 86
+W+C +C +++E+ ++G W KG+
Sbjct: 135 LWLCKICSEQREVWKRSGAWFYKGL 159
>sp|Q58D79|RPH3L_BOVIN Rab effector Noc2 OS=Bos taurus GN=RPH3AL PE=2 SV=1
Length = 292
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 62 IWVCILCRKKQELLSKTGQWINKGM 86
+W+C +C +++E+ ++G W KG+
Sbjct: 135 LWLCKICSEQREVWKRSGAWFYKGI 159
>sp|P47709|RP3A_RAT Rabphilin-3A OS=Rattus norvegicus GN=Rph3a PE=1 SV=1
Length = 684
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 62 IWVCILCRKKQELLSKTGQWINKGM 86
+W+C +C +++E+ ++G W KG
Sbjct: 134 VWLCKICLEQREVWKRSGAWFFKGF 158
>sp|P47708|RP3A_MOUSE Rabphilin-3A OS=Mus musculus GN=Rph3a PE=1 SV=2
Length = 681
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 62 IWVCILCRKKQELLSKTGQWINKGM 86
+W+C +C +++E+ ++G W KG
Sbjct: 134 VWLCKICLEQREVWKRSGAWFFKGF 158
>sp|A6LSR9|RNY_CLOB8 Ribonuclease Y OS=Clostridium beijerinckii (strain ATCC 51743 /
NCIMB 8052) GN=rny PE=3 SV=1
Length = 513
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 70 KKQELLSKTGQWINKGMNSTPQGDAIMRKIEADMMFEDKRPKLERGTTKSSK 121
KK ELL K + IN+ M Q +A ++K ++E++R +LER + SS+
Sbjct: 100 KKSELLEKKDETINQRMLEVDQVEARVQK-----LYEERRAELERISALSSE 146
>sp|Q5ZM25|OLA1_CHICK Obg-like ATPase 1 OS=Gallus gallus GN=OLA1 PE=2 SV=1
Length = 396
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 69 RKKQELLSKTGQWINK---GMNSTPQGDAIMRKIEADMMFEDKRPKLERGTTKSS 120
RKK + L K +W++K G P A+ K++ DM E+K+ LE T+S+
Sbjct: 238 RKKNKWLIKIKEWVDKHDPGALVIPFSGALELKLQ-DMSAEEKQKYLEENMTQSA 291
>sp|Q06846|RP3A_BOVIN Rabphilin-3A OS=Bos taurus GN=RPH3A PE=1 SV=1
Length = 704
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 62 IWVCILCRKKQELLSKTGQWINKGM 86
+W+C +C +++E+ ++G W KG
Sbjct: 138 VWLCKICIEQREVWKRSGAWFFKGF 162
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,581,659
Number of Sequences: 539616
Number of extensions: 1369043
Number of successful extensions: 4632
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4604
Number of HSP's gapped (non-prelim): 33
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)