Query psy6193
Match_columns 122
No_of_seqs 120 out of 173
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 20:05:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zet_C Melanophilin; complex, 99.9 8.9E-28 3E-32 181.3 4.7 78 11-88 3-134 (153)
2 1zbd_B Rabphilin-3A; G protein 99.9 7.1E-27 2.4E-31 173.0 5.4 73 18-90 3-126 (134)
3 3bc1_B Synaptotagmin-like prot 99.5 5E-14 1.7E-18 92.7 4.8 57 23-89 1-57 (59)
4 2a20_A Regulating synaptic mem 96.4 0.00051 1.7E-08 45.4 0.0 14 60-73 49-62 (62)
5 2csz_A Synaptotagmin-like prot 91.2 0.034 1.2E-06 37.8 -0.2 14 60-73 62-75 (76)
6 3j21_i 50S ribosomal protein L 55.4 4.9 0.00017 27.4 1.5 39 43-85 25-72 (83)
7 3iz5_m 60S ribosomal protein L 52.0 5.7 0.00019 27.6 1.4 30 53-86 37-74 (92)
8 2elj_A Transcriptional adapter 51.2 11 0.00037 25.3 2.7 27 6-32 1-30 (88)
9 3izc_m 60S ribosomal protein R 48.6 6.8 0.00023 27.2 1.4 30 53-86 37-74 (92)
10 2olm_A Nucleoporin-like protei 45.3 14 0.00046 26.9 2.6 32 43-74 8-58 (140)
11 2d0s_A Cytochrome C, cytochrom 42.0 27 0.00094 20.8 3.3 21 18-38 56-76 (79)
12 3ph2_B Cytochrome C6; photosyn 41.2 33 0.0011 20.3 3.6 24 18-41 58-82 (86)
13 2yrc_A Protein transport prote 40.1 3.8 0.00013 25.9 -0.9 13 61-73 32-44 (59)
14 1cch_A Cytochrome C551; electr 38.8 28 0.00097 20.6 3.0 20 18-38 60-79 (82)
15 3efo_B SEC24 related gene fami 37.9 5.3 0.00018 35.9 -0.7 20 55-74 101-132 (770)
16 3dr0_A Cytochrome C6; photosyn 37.6 36 0.0012 20.3 3.4 24 18-41 64-88 (93)
17 3eh2_A Protein transport prote 37.2 5.6 0.00019 35.7 -0.7 20 55-74 97-128 (766)
18 2exv_A Cytochrome C-551; alpha 37.1 30 0.001 20.6 2.9 20 18-38 60-79 (82)
19 1gdv_A Cytochrome C6; RED ALGA 36.9 47 0.0016 19.5 3.8 24 18-41 57-81 (85)
20 1mz4_A Cytochrome C550; PSII a 36.6 34 0.0012 22.8 3.4 25 18-42 100-124 (137)
21 2l4d_A SCO1/SENC family protei 36.3 48 0.0016 20.6 3.9 24 18-42 75-98 (110)
22 1a56_A C-551, ferricytochrome 36.0 22 0.00076 21.3 2.2 23 17-39 57-79 (81)
23 4a17_Y RPL37A, 60S ribosomal p 35.6 16 0.00054 25.9 1.6 29 54-86 38-74 (103)
24 3jyw_9 60S ribosomal protein L 35.1 8.8 0.0003 25.5 0.2 29 53-85 27-63 (72)
25 1yuz_A Nigerythrin; rubrythrin 35.0 45 0.0016 25.0 4.2 9 62-70 171-179 (202)
26 3l9k_W Dynein intermediate cha 34.1 20 0.0007 21.1 1.7 11 25-35 1-11 (38)
27 1pcx_A Protein transport prote 34.1 6.6 0.00023 35.4 -0.7 20 55-74 115-146 (810)
28 1f1c_A Cytochrome C549; dimeri 33.9 34 0.0012 22.1 3.0 26 17-42 97-122 (129)
29 1ayg_A Cytochrome C-552; elect 33.4 37 0.0012 20.3 2.9 20 19-39 59-78 (80)
30 2owa_A Arfgap-like finger doma 33.3 21 0.00072 25.9 2.0 45 21-74 14-69 (138)
31 1g2h_A Transcriptional regulat 32.8 79 0.0027 18.9 4.4 17 24-40 17-33 (61)
32 1ls9_A Cytochrome C6; omega lo 32.7 53 0.0018 19.9 3.6 25 18-42 62-87 (91)
33 1m2v_B SEC24, protein transpor 31.5 7.4 0.00025 35.9 -0.8 20 55-74 231-262 (926)
34 1f1f_A Cytochrome C6; heme, pr 31.0 59 0.002 19.3 3.6 24 18-41 61-85 (89)
35 1e29_A Cytochrome C549; electr 30.5 64 0.0022 21.9 4.1 26 17-42 99-124 (135)
36 3cc2_Z 50S ribosomal protein L 30.3 20 0.0007 25.8 1.5 27 55-85 63-97 (116)
37 3eh1_A Protein transport prote 29.9 8.6 0.00029 34.5 -0.7 20 55-74 88-118 (751)
38 1tjl_A DNAK suppressor protein 29.4 1.2E+02 0.004 22.0 5.5 22 55-76 114-146 (151)
39 3dmi_A Cytochrome C6; electron 29.0 67 0.0023 19.0 3.6 23 18-40 59-82 (88)
40 1urq_A M-tomosyn isoform; tran 28.8 59 0.002 20.5 3.4 22 27-48 18-39 (63)
41 1c6r_A Cytochrome C6; electron 28.6 69 0.0023 19.1 3.6 24 18-41 60-84 (89)
42 1cyi_A Cytochrome C6, cytochro 28.3 69 0.0024 19.2 3.6 24 18-41 59-83 (90)
43 2crr_A Stromal membrane-associ 28.0 6.9 0.00024 28.5 -1.4 20 55-74 32-62 (141)
44 1c75_A Cytochrome C-553; heme, 28.0 53 0.0018 19.2 2.9 20 19-39 50-69 (71)
45 3dxr_A Mitochondrial import in 27.0 28 0.00097 23.2 1.7 32 21-54 2-33 (89)
46 3lju_X ARF-GAP with dual PH do 26.3 36 0.0012 27.7 2.5 20 55-74 37-67 (386)
47 1wve_C 4-cresol dehydrogenase 26.2 59 0.002 19.6 3.0 21 19-39 50-72 (80)
48 3cu4_A Cytochrome C family pro 25.2 78 0.0027 18.9 3.4 21 19-39 60-82 (85)
49 2iqj_A Stromal membrane-associ 24.9 16 0.00054 26.4 0.1 20 55-74 30-60 (134)
50 1ffk_W Ribosomal protein L37AE 24.2 26 0.00089 23.1 1.0 28 54-85 29-64 (73)
51 4b8x_A SCO5413, possible MARR- 24.0 56 0.0019 22.0 2.8 18 22-39 119-136 (147)
52 3o47_A ADP-ribosylation factor 23.9 23 0.00079 27.6 0.8 16 55-70 40-65 (329)
53 3ivp_A Putative transposon-rel 23.9 1.1E+02 0.0038 19.9 4.2 25 21-45 90-114 (126)
54 1vq8_Z 50S ribosomal protein L 23.6 29 0.00098 23.2 1.2 28 54-85 29-64 (83)
55 4aik_A Transcriptional regulat 23.5 58 0.002 22.2 2.8 19 22-40 115-133 (151)
56 1gks_A Cytochrome C551; haloph 23.3 59 0.002 19.5 2.6 21 19-39 55-76 (78)
57 1lgh_B LH II, B800/850, light 23.0 74 0.0025 19.3 2.8 18 20-37 3-20 (45)
58 1n7s_A Vesicle-associated memb 22.9 91 0.0031 19.0 3.4 19 30-48 21-39 (63)
59 1jk0_B RNR Y4, ribonucleoside- 22.6 48 0.0016 26.7 2.5 33 14-46 63-95 (345)
60 3dp5_A OMCF, cytochrome C fami 22.5 88 0.003 19.8 3.4 22 18-39 73-96 (99)
61 1sfc_A VAMP 2, protein (synapt 22.3 84 0.0029 21.1 3.4 21 28-48 45-65 (96)
62 1l4a_A Synaptobrevin; snare, s 22.3 89 0.003 20.1 3.4 25 24-48 26-50 (80)
63 2zon_G Cytochrome C551; nitrit 21.8 43 0.0015 20.2 1.7 23 18-40 61-85 (87)
64 3oj7_A Putative histidine tria 21.4 54 0.0018 21.6 2.2 25 18-42 51-75 (117)
65 3o0r_C Nitric oxide reductase 21.1 1E+02 0.0034 20.5 3.6 21 18-39 111-131 (146)
66 2bx9_A Anti-trap, AT, tryptoph 20.8 9.8 0.00033 23.4 -1.5 31 54-84 11-45 (53)
No 1
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=99.94 E-value=8.9e-28 Score=181.27 Aligned_cols=78 Identities=23% Similarity=0.320 Sum_probs=64.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHhh------------------------hhccc-------
Q psy6193 11 MAQTNADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRSA------------------------CQVYL------- 59 (122)
Q Consensus 11 ~~~~~~~e~pdLS~LTeeEreiIl~VL~Rdk~le~~E~eRirrL------------------------C~~C~------- 59 (122)
.++.+|+++||||||||+||++|++||+||++++++|++||++| |++|+
T Consensus 3 ~~~~~m~~~~dLs~LteeEr~~Il~VL~Rd~~l~~~EeeRi~kLk~~l~~~~~k~~~~~~~~~~~~~~C~~C~~~fg~l~ 82 (153)
T 2zet_C 3 SGSSGMGKRLDLSTLTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLL 82 (153)
T ss_dssp --------CCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGTBCTTTCCBGGGCS
T ss_pred CCCCCCccCCCcccCCHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcccccCCCccchhhcCcccccc
Confidence 34567889999999999999999999999999999999999776 55555
Q ss_pred -----------------------ccccccchhhhhhhHhhhcccccccCCCC
Q psy6193 60 -----------------------MVIWVCILCRKKQELLSKTGQWINKGMNS 88 (122)
Q Consensus 60 -----------------------k~~W~C~vC~k~~eL~~kSGeWFye~~~~ 88 (122)
+++|+|++|++.++|+++||+|||++.++
T Consensus 83 ~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~rel~~kSGeWf~~~~~~ 134 (153)
T 2zet_C 83 NSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARVVKIGSLEWYYQHVRA 134 (153)
T ss_dssp SCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHHHHHHHHHCHHHHHHHHT
T ss_pred CCCCcCCCCCchhhcccccccCCCCcEeeHHHHHHHHHHHhccHHHHHHHHh
Confidence 46999999999999999999999998665
No 2
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=99.93 E-value=7.1e-27 Score=172.96 Aligned_cols=73 Identities=27% Similarity=0.556 Sum_probs=62.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHhh------------------hhccc--------------------
Q psy6193 18 IIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRSA------------------CQVYL-------------------- 59 (122)
Q Consensus 18 e~pdLS~LTeeEreiIl~VL~Rdk~le~~E~eRirrL------------------C~~C~-------------------- 59 (122)
..||||||||+||++|++||+||++++++|++||++| |++|+
T Consensus 3 ~~~dls~LteeE~~~Il~Vl~Rd~~l~~~E~~ri~kL~~~l~~~k~~~~~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~V 82 (134)
T 1zbd_B 3 HMRKQEELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNV 82 (134)
T ss_dssp -----CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCSSSBCSSSCCBCSTTSCCEEECTTTCCEE
T ss_pred CCCCcccCCHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCccccccCCCcccccCCCCCCCCCCccc
Confidence 4799999999999999999999999999999999888 55555
Q ss_pred -------------ccccccchhhhhhhHhhhcccccccCCCCCC
Q psy6193 60 -------------MVIWVCILCRKKQELLSKTGQWINKGMNSTP 90 (122)
Q Consensus 60 -------------k~~W~C~vC~k~~eL~~kSGeWFye~~~~~~ 90 (122)
+++|+|++|+++++|+++||+|||++.++..
T Consensus 83 C~~C~~~~~~~~~~~~W~C~vC~k~rel~~kSG~Wf~~~~~k~~ 126 (134)
T 1zbd_B 83 CTKCGVETSNNRPHPVWLCKICLEQREVWKRSGAWFFKGFPKQV 126 (134)
T ss_dssp ETTSEEECCCSSSSCCEEEHHHHHHHHHHHHTSHHHHTSCCCCC
T ss_pred ccccCCccCCCCCccceechhhHHHHHHHHhhhHHHHhcCcccc
Confidence 2599999999999999999999999998754
No 3
>3bc1_B Synaptotagmin-like protein 2; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Homo sapiens}
Probab=99.46 E-value=5e-14 Score=92.71 Aligned_cols=57 Identities=23% Similarity=0.338 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccccccccchhhhhhhHhhhcccccccCCCCC
Q psy6193 23 SHLTLEERQIIESVMMRQKQEEERELEIMRSACQVYLMVIWVCILCRKKQELLSKTGQWINKGMNST 89 (122)
Q Consensus 23 S~LTeeEreiIl~VL~Rdk~le~~E~eRirrLC~~C~k~~W~C~vC~k~~eL~~kSGeWFye~~~~~ 89 (122)
++||++|++.||+||+||..++..|++||++| +.. + +..+.++++||+|||+.+++-
T Consensus 1 ~~l~e~E~~~IL~VL~RD~~lr~~ee~RIrkL-----k~~-l----~~~~~~k~~sg~Wf~e~k~~r 57 (59)
T 3bc1_B 1 GSPEFEEQEAIMKVLQRDAALKRAEEERVRHL-----PEK-I----KDDQQLKNMSGQWFYEAKAKR 57 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG-----GGT-C----CCHHHHHHHHTGGGGC-----
T ss_pred CCCCHHHHHHHHHHHhhHHHHhhChHHHHHHH-----HHH-h----ccHHHhccccchhhHHHhhhc
Confidence 46899999999999999999999999999999 221 1 567889999999999998653
No 4
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=96.42 E-value=0.00051 Score=45.42 Aligned_cols=14 Identities=71% Similarity=1.474 Sum_probs=12.7
Q ss_pred ccccccchhhhhhh
Q psy6193 60 MVIWVCILCRKKQE 73 (122)
Q Consensus 60 k~~W~C~vC~k~~e 73 (122)
+++|+|++|+++||
T Consensus 49 k~~WvC~lC~k~qe 62 (62)
T 2a20_A 49 KVMWVCNLCRKQQE 62 (62)
T ss_dssp CEEEEEHHHHHHTC
T ss_pred eEEEEehhhhhccC
Confidence 68999999999985
No 5
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.23 E-value=0.034 Score=37.76 Aligned_cols=14 Identities=21% Similarity=0.650 Sum_probs=11.9
Q ss_pred ccccccchhhhhhh
Q psy6193 60 MVIWVCILCRKKQE 73 (122)
Q Consensus 60 k~~W~C~vC~k~~e 73 (122)
...|+|+||.+++|
T Consensus 62 ~~~W~C~VC~k~~e 75 (76)
T 2csz_A 62 NGTWRCKVCSGPSS 75 (76)
T ss_dssp TTCEEEHHHHSSCC
T ss_pred CCCEEEeeCchhhc
Confidence 56999999999864
No 6
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.36 E-value=4.9 Score=27.40 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=26.2
Q ss_pred HHHHHHHH-HHhhhhccc--------ccccccchhhhhhhHhhhcccccccC
Q psy6193 43 EEERELEI-MRSACQVYL--------MVIWVCILCRKKQELLSKTGQWINKG 85 (122)
Q Consensus 43 le~~E~eR-irrLC~~C~--------k~~W~C~vC~k~~eL~~kSGeWFye~ 85 (122)
..++|... -+..|.-|. ..+|.|.-|.+. +..|+|-++.
T Consensus 25 vkkie~~q~~ky~CpfCGk~~vkR~a~GIW~C~kCg~~----~AGGAy~~~T 72 (83)
T 3j21_i 25 VAAVEAKMRQKHTCPVCGRKAVKRISTGIWQCQKCGAT----FAGGAYLPVT 72 (83)
T ss_dssp HHHHHHHHHSCBCCSSSCSSCEEEEETTEEEETTTCCE----EECCSSSSSC
T ss_pred HHHHHHHhhcccCCCCCCCceeEecCcCeEEcCCCCCE----EeCCccccCc
Confidence 34444333 233399997 369999999985 5688887754
No 7
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=52.00 E-value=5.7 Score=27.61 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=23.1
Q ss_pred hhhhccc--------ccccccchhhhhhhHhhhcccccccCC
Q psy6193 53 SACQVYL--------MVIWVCILCRKKQELLSKTGQWINKGM 86 (122)
Q Consensus 53 rLC~~C~--------k~~W~C~vC~k~~eL~~kSGeWFye~~ 86 (122)
..|..|. ..+|.|.-|.+ .+..|+|-++..
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~~Cg~----~~AGGAy~~~T~ 74 (92)
T 3iz5_m 37 YFCEFCGKFAVKRKAVGIWGCKDCGK----VKAGGAYTMNTA 74 (92)
T ss_dssp BCCTTTCSSCBEEEETTEEECSSSCC----EEECCSSSSCCH
T ss_pred ccCcccCCCeeEecCcceEEcCCCCC----EEeCCcccCCCc
Confidence 3399997 36999999998 456889877653
No 8
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=51.25 E-value=11 Score=25.28 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=19.1
Q ss_pred cccccCCCCCC---CCCCCCCCCCHHHHHH
Q psy6193 6 GMVTSMAQTNA---DIIPDLSHLTLEERQI 32 (122)
Q Consensus 6 ~~~~~~~~~~~---~e~pdLS~LTeeErei 32 (122)
|-|+...++++ ..+|+...||++|++.
T Consensus 1 ~~~~~~~~~~l~di~~~p~~~lLs~~E~~L 30 (88)
T 2elj_A 1 GSSGSSGNMTISDIQHAPDYALLSNDEQQL 30 (88)
T ss_dssp CCSCCCSCCCSHHHHTSTTCSSSCHHHHHH
T ss_pred CCCCCCCCCCccccccCCCchhcCHHHHHH
Confidence 34455444444 5799999999999985
No 9
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=48.61 E-value=6.8 Score=27.22 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=23.0
Q ss_pred hhhhccc--------ccccccchhhhhhhHhhhcccccccCC
Q psy6193 53 SACQVYL--------MVIWVCILCRKKQELLSKTGQWINKGM 86 (122)
Q Consensus 53 rLC~~C~--------k~~W~C~vC~k~~eL~~kSGeWFye~~ 86 (122)
..|.-|. ..+|.|.-|.+ .+..|+|-++..
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~~C~~----~~AGGAy~~~T~ 74 (92)
T 3izc_m 37 YDCSFCGKKTVKRGAAGIWTCSCCKK----TVAGGAYTVSTA 74 (92)
T ss_dssp CCCSSSCSSCCEEEETTEEECTTTCC----EEECCSSSSCCH
T ss_pred CcCCCCCCceeeecccceEEcCCCCC----EEeCCcccCCCc
Confidence 3399997 36999999988 456889877653
No 10
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=45.30 E-value=14 Score=26.88 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhh--------hhccc--c--------cccccchhhh-hhhH
Q psy6193 43 EEERELEIMRSA--------CQVYL--M--------VIWVCILCRK-KQEL 74 (122)
Q Consensus 43 le~~E~eRirrL--------C~~C~--k--------~~W~C~vC~k-~~eL 74 (122)
++++.++.|+.| |++|. . ++.+|.-|.. .+.|
T Consensus 8 ~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~L 58 (140)
T 2olm_A 8 QEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGL 58 (140)
T ss_dssp HHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccC
Confidence 334444555544 99999 2 3567888877 4443
No 11
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=42.03 E-value=27 Score=20.80 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=17.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHH
Q psy6193 18 IIPDLSHLTLEERQIIESVMM 38 (122)
Q Consensus 18 e~pdLS~LTeeEreiIl~VL~ 38 (122)
.||.+..||++|.+.|...|.
T Consensus 56 ~Mp~~~~Ls~~ei~~l~~yl~ 76 (79)
T 2d0s_A 56 PMPPHPQVAEADIEKIVRWVL 76 (79)
T ss_dssp CBCCCTTSCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHH
Confidence 366667899999999988775
No 12
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=41.24 E-value=33 Score=20.35 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=19.0
Q ss_pred CCCCC-CCCCHHHHHHHHHHHHhHH
Q psy6193 18 IIPDL-SHLTLEERQIIESVMMRQK 41 (122)
Q Consensus 18 e~pdL-S~LTeeEreiIl~VL~Rdk 41 (122)
.||.+ ..||++|++.|...|....
T Consensus 58 ~Mp~~~~~ls~~ei~~l~~yl~~~~ 82 (86)
T 3ph2_B 58 GMPAFKGRLTDDQIAAVAAYVLDQA 82 (86)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCHHHHHHHHHHHHHhh
Confidence 46655 5799999999999987654
No 13
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=40.08 E-value=3.8 Score=25.91 Aligned_cols=13 Identities=23% Similarity=1.086 Sum_probs=10.4
Q ss_pred cccccchhhhhhh
Q psy6193 61 VIWVCILCRKKQE 73 (122)
Q Consensus 61 ~~W~C~vC~k~~e 73 (122)
..|.|++|....+
T Consensus 32 ~~W~C~~C~~~N~ 44 (59)
T 2yrc_A 32 KLWACNFCYQRNQ 44 (59)
T ss_dssp TEEECSSSCCEEE
T ss_pred CEEEcccCCCcCC
Confidence 4899999987654
No 14
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=38.78 E-value=28 Score=20.60 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHH
Q psy6193 18 IIPDLSHLTLEERQIIESVMM 38 (122)
Q Consensus 18 e~pdLS~LTeeEreiIl~VL~ 38 (122)
.||.+ .||++|++.|...|.
T Consensus 60 ~Mp~~-~ls~~ei~~l~~yl~ 79 (82)
T 1cch_A 60 PMPPN-PVTEEEAKILAEWVL 79 (82)
T ss_dssp CCCCC-SCCHHHHHHHHHHHH
T ss_pred CCCCC-CCCHHHHHHHHHHHH
Confidence 36666 899999999998775
No 15
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=37.90 E-value=5.3 Score=35.86 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=16.6
Q ss_pred hhccc------------ccccccchhhhhhhH
Q psy6193 55 CQVYL------------MVIWVCILCRKKQEL 74 (122)
Q Consensus 55 C~~C~------------k~~W~C~vC~k~~eL 74 (122)
|.+|+ ...|.|++|....++
T Consensus 101 C~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~ 132 (770)
T 3efo_B 101 CNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDV 132 (770)
T ss_dssp CTTTCCBSCTTCEEEGGGTEEECTTTCCEEEC
T ss_pred cCCCCCCcCCceEEecCCCEEEeccccccCCC
Confidence 99999 359999999987764
No 16
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=37.61 E-value=36 Score=20.32 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=18.9
Q ss_pred CCCCC-CCCCHHHHHHHHHHHHhHH
Q psy6193 18 IIPDL-SHLTLEERQIIESVMMRQK 41 (122)
Q Consensus 18 e~pdL-S~LTeeEreiIl~VL~Rdk 41 (122)
.||.+ ..||++|.+.|...|....
T Consensus 64 ~Mp~~~~~ls~~ei~~l~~yl~~l~ 88 (93)
T 3dr0_A 64 AMPAFGGRLSDADIANVAAYIADQA 88 (93)
T ss_dssp TBCCCBTTBCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 46666 6799999999999887553
No 17
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=37.20 E-value=5.6 Score=35.73 Aligned_cols=20 Identities=15% Similarity=0.431 Sum_probs=16.3
Q ss_pred hhccc------------ccccccchhhhhhhH
Q psy6193 55 CQVYL------------MVIWVCILCRKKQEL 74 (122)
Q Consensus 55 C~~C~------------k~~W~C~vC~k~~eL 74 (122)
|.+|+ ...|.|++|....++
T Consensus 97 C~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~ 128 (766)
T 3eh2_A 97 CNRCKAYMCPFMQFIEGGRRFQCCFCSCINDV 128 (766)
T ss_dssp CTTTCCBCCTTCEEEGGGTEEECTTTCCEEEC
T ss_pred cCCCCCEeCCceEEecCCCEEEeccccccCCC
Confidence 99999 248999999987653
No 18
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=37.07 E-value=30 Score=20.58 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=16.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHH
Q psy6193 18 IIPDLSHLTLEERQIIESVMM 38 (122)
Q Consensus 18 e~pdLS~LTeeEreiIl~VL~ 38 (122)
.||.+ .||++|.+.|...|.
T Consensus 60 ~Mp~~-~ls~~ei~~l~~yl~ 79 (82)
T 2exv_A 60 PMPPN-AVSDDEAQTLAKWVL 79 (82)
T ss_dssp CBCCC-CCCHHHHHHHHHHHH
T ss_pred CCCCC-CCCHHHHHHHHHHHH
Confidence 46666 899999999998775
No 19
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=36.94 E-value=47 Score=19.54 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=18.3
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHhHH
Q psy6193 18 IIPDLS-HLTLEERQIIESVMMRQK 41 (122)
Q Consensus 18 e~pdLS-~LTeeEreiIl~VL~Rdk 41 (122)
.||.+. .||++|++.|...|....
T Consensus 57 ~Mp~~~~~ls~~ei~~l~~yl~~~~ 81 (85)
T 1gdv_A 57 AMPAFGGRLVDEDIEDAANYVLSQS 81 (85)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 355544 799999999999887654
No 20
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=36.56 E-value=34 Score=22.83 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=20.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhHHH
Q psy6193 18 IIPDLSHLTLEERQIIESVMMRQKQ 42 (122)
Q Consensus 18 e~pdLS~LTeeEreiIl~VL~Rdk~ 42 (122)
.||.+..||++|...|...|.....
T Consensus 100 ~MP~~~~Lsd~ei~alaaYl~~~~~ 124 (137)
T 1mz4_A 100 IFPKMRNLTEKDLVAIAGHILVEPK 124 (137)
T ss_dssp TSGGGTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHccc
Confidence 4666677999999999999876644
No 21
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=36.30 E-value=48 Score=20.62 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=19.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhHHH
Q psy6193 18 IIPDLSHLTLEERQIIESVMMRQKQ 42 (122)
Q Consensus 18 e~pdLS~LTeeEreiIl~VL~Rdk~ 42 (122)
.||.+ .||++|+..|...|.....
T Consensus 75 ~Mp~~-~Ls~~ei~~l~~yl~~~~~ 98 (110)
T 2l4d_A 75 AMPNM-RLGDAEVSALISYLEEETA 98 (110)
T ss_dssp CCCCC-CCCHHHHHHHHHHHHHHHH
T ss_pred cCCCC-CCCHHHHHHHHHHHHHccc
Confidence 56766 5999999999999876543
No 22
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=36.03 E-value=22 Score=21.33 Aligned_cols=23 Identities=4% Similarity=0.120 Sum_probs=17.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh
Q psy6193 17 DIIPDLSHLTLEERQIIESVMMR 39 (122)
Q Consensus 17 ~e~pdLS~LTeeEreiIl~VL~R 39 (122)
..||.+..||++|.+.|...|..
T Consensus 57 ~~Mp~~~~Ls~~ei~~l~~yl~~ 79 (81)
T 1a56_A 57 IPMPPNVNVSDADAKALADWILT 79 (81)
T ss_dssp CCBCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh
Confidence 34665578999999999988754
No 23
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=35.62 E-value=16 Score=25.91 Aligned_cols=29 Identities=28% Similarity=0.603 Sum_probs=22.8
Q ss_pred hhhccc--------ccccccchhhhhhhHhhhcccccccCC
Q psy6193 54 ACQVYL--------MVIWVCILCRKKQELLSKTGQWINKGM 86 (122)
Q Consensus 54 LC~~C~--------k~~W~C~vC~k~~eL~~kSGeWFye~~ 86 (122)
.|.-|. ..+|.|.-|.+. +..|+|-++..
T Consensus 38 ~CpfCgk~~vKR~a~GIW~C~kCg~~----~AGGAy~~~T~ 74 (103)
T 4a17_Y 38 GCPFCGKVAVKRAAVGIWKCKPCKKI----IAGGAWELTTP 74 (103)
T ss_dssp ECTTTCCEEEEEEETTEEEETTTTEE----EECCSSCSSCH
T ss_pred CCCCCCCceeeecCcceEEcCCCCCE----EeCCcccCCCc
Confidence 399997 369999999884 46889987754
No 24
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=35.08 E-value=8.8 Score=25.50 Aligned_cols=29 Identities=24% Similarity=0.562 Sum_probs=22.0
Q ss_pred hhhhccc--------ccccccchhhhhhhHhhhcccccccC
Q psy6193 53 SACQVYL--------MVIWVCILCRKKQELLSKTGQWINKG 85 (122)
Q Consensus 53 rLC~~C~--------k~~W~C~vC~k~~eL~~kSGeWFye~ 85 (122)
..|.-|. ..+|.|.-|.+. +..|+|-++.
T Consensus 27 y~C~fCgk~~vkR~a~GIW~C~~C~~~----~AGGAy~~~T 63 (72)
T 3jyw_9 27 YDCSFCGKKTVKRGAAGIWTCSCCKKT----VAGGAYTVST 63 (72)
T ss_dssp BCCSSCCSSCBSBCSSSCBCCSSSCCC----CCCSSSSSCC
T ss_pred ccCCCCCCceeEecCCCeEECCCCCCE----EeCCccccCC
Confidence 3399997 369999999874 4678887664
No 25
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=34.97 E-value=45 Score=25.00 Aligned_cols=9 Identities=22% Similarity=0.818 Sum_probs=5.4
Q ss_pred ccccchhhh
Q psy6193 62 IWVCILCRK 70 (122)
Q Consensus 62 ~W~C~vC~k 70 (122)
.|+|.+|+-
T Consensus 171 ~~~C~~CG~ 179 (202)
T 1yuz_A 171 FHLCPICGY 179 (202)
T ss_dssp EEECSSSCC
T ss_pred EEEECCCCC
Confidence 566666654
No 26
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=34.13 E-value=20 Score=21.09 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=9.5
Q ss_pred CCHHHHHHHHH
Q psy6193 25 LTLEERQIIES 35 (122)
Q Consensus 25 LTeeEreiIl~ 35 (122)
||++|++.|+.
T Consensus 1 LseEEk~~I~~ 11 (38)
T 3l9k_W 1 LSEEQKQMIIL 11 (38)
T ss_dssp CCHHHHHHHHT
T ss_pred CCHHHHHHHhc
Confidence 79999999974
No 27
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=34.08 E-value=6.6 Score=35.41 Aligned_cols=20 Identities=25% Similarity=0.703 Sum_probs=16.4
Q ss_pred hhccc------------ccccccchhhhhhhH
Q psy6193 55 CQVYL------------MVIWVCILCRKKQEL 74 (122)
Q Consensus 55 C~~C~------------k~~W~C~vC~k~~eL 74 (122)
|.+|+ ...|.|++|....++
T Consensus 115 C~~CrayiNPf~~~~~~g~~W~C~~C~~~N~~ 146 (810)
T 1pcx_A 115 CRRCRSYMNPFVTFIEQGRRWRCNFCRLANDV 146 (810)
T ss_dssp CTTTCCBCCTTCEEETTTTEEECTTTCCEEEC
T ss_pred cCCccCEecCceEEeCCCCEEEccCCCCcCCC
Confidence 99998 248999999987654
No 28
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=33.90 E-value=34 Score=22.12 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=20.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhHHH
Q psy6193 17 DIIPDLSHLTLEERQIIESVMMRQKQ 42 (122)
Q Consensus 17 ~e~pdLS~LTeeEreiIl~VL~Rdk~ 42 (122)
..||.+..||++|+..|...|.....
T Consensus 97 ~~Mp~~~~Ls~~ei~~l~~Yl~~l~~ 122 (129)
T 1f1c_A 97 DIFPKMRNISEDDLYNVAGYILLQPK 122 (129)
T ss_dssp TTCGGGSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCc
Confidence 34776678999999999999876543
No 29
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=33.39 E-value=37 Score=20.34 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=16.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHh
Q psy6193 19 IPDLSHLTLEERQIIESVMMR 39 (122)
Q Consensus 19 ~pdLS~LTeeEreiIl~VL~R 39 (122)
||.+ .||++|.+.|...|..
T Consensus 59 Mp~~-~Lsd~ei~~l~~yl~~ 78 (80)
T 1ayg_A 59 MPPQ-NVTDAEAKQLAQWILS 78 (80)
T ss_dssp BCCC-CCCHHHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHHh
Confidence 6666 8999999999987753
No 30
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=33.32 E-value=21 Score=25.92 Aligned_cols=45 Identities=9% Similarity=0.304 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccc--c--------cccccchhhh-hhhH
Q psy6193 21 DLSHLTLEERQIIESVMMRQKQEEERELEIMRSACQVYL--M--------VIWVCILCRK-KQEL 74 (122)
Q Consensus 21 dLS~LTeeEreiIl~VL~Rdk~le~~E~eRirrLC~~C~--k--------~~W~C~vC~k-~~eL 74 (122)
+-.+.++++++.|++-|.+.. =-+.|++|. . ++.+|.-|.. .+.|
T Consensus 14 ~~~~~~~~~~~~l~~~l~~~p---------~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 69 (138)
T 2owa_A 14 EKGFVSDKLRDNFFQIVRNRP---------ENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKM 69 (138)
T ss_dssp TTSCBCHHHHHHHHHHHHHSG---------GGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHcCc---------CCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCC
Confidence 344677888888776332211 114499999 2 3567888887 5544
No 31
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=32.83 E-value=79 Score=18.87 Aligned_cols=17 Identities=12% Similarity=0.147 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHhH
Q psy6193 24 HLTLEERQIIESVMMRQ 40 (122)
Q Consensus 24 ~LTeeEreiIl~VL~Rd 40 (122)
.|.+-|++.|..+|.+.
T Consensus 17 ~l~~~Er~~I~~aL~~~ 33 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY 33 (61)
T ss_dssp SCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 47888999999999886
No 32
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=32.67 E-value=53 Score=19.89 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=19.2
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHhHHH
Q psy6193 18 IIPDLS-HLTLEERQIIESVMMRQKQ 42 (122)
Q Consensus 18 e~pdLS-~LTeeEreiIl~VL~Rdk~ 42 (122)
.||.+. .||++|...|...|.....
T Consensus 62 ~Mp~~~~~ls~~ei~~l~~yl~~~~~ 87 (91)
T 1ls9_A 62 AMPAWADRLDEDDIEAVSNYVYDQAV 87 (91)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCcchhhhCCHHHHHHHHHHHHHhcc
Confidence 366554 7999999999998876543
No 33
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=31.47 E-value=7.4 Score=35.90 Aligned_cols=20 Identities=25% Similarity=0.703 Sum_probs=16.4
Q ss_pred hhccc------------ccccccchhhhhhhH
Q psy6193 55 CQVYL------------MVIWVCILCRKKQEL 74 (122)
Q Consensus 55 C~~C~------------k~~W~C~vC~k~~eL 74 (122)
|.+|+ ...|.|++|....++
T Consensus 231 C~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~ 262 (926)
T 1m2v_B 231 CRRCRSYMNPFVTFIEQGRRWRCNFCRLANDV 262 (926)
T ss_dssp CSSSCCBCCTTCEEETTTTEEECTTTCCEEEC
T ss_pred cCCccCEecCceEEeCCCCEEEccCCCCCCCC
Confidence 99998 248999999987654
No 34
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=31.03 E-value=59 Score=19.35 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=18.3
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHhHH
Q psy6193 18 IIPDLS-HLTLEERQIIESVMMRQK 41 (122)
Q Consensus 18 e~pdLS-~LTeeEreiIl~VL~Rdk 41 (122)
.||.+. .||++|+..|...|....
T Consensus 61 ~Mp~~~~~ls~~ei~~l~~yl~~~~ 85 (89)
T 1f1f_A 61 AMPGFNGRLSPLQIEDVAAYVVDQA 85 (89)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCccccCCCHHHHHHHHHHHHHHh
Confidence 356554 699999999999887653
No 35
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=30.49 E-value=64 Score=21.93 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=20.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhHHH
Q psy6193 17 DIIPDLSHLTLEERQIIESVMMRQKQ 42 (122)
Q Consensus 17 ~e~pdLS~LTeeEreiIl~VL~Rdk~ 42 (122)
..||.+..||++|.+.|...|..+.+
T Consensus 99 ~~mp~~~~Lsd~ei~~laaYl~~~~~ 124 (135)
T 1e29_A 99 DIYPEMRNYTEDDIFDVAGYTLIAPK 124 (135)
T ss_dssp TTCGGGTTCCHHHHHHHHHHHHHHHH
T ss_pred hcccccccCCHHHHHHHHHHHHhccC
Confidence 34777778999999999999876543
No 36
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=30.32 E-value=20 Score=25.76 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=21.1
Q ss_pred hhccc--------ccccccchhhhhhhHhhhcccccccC
Q psy6193 55 CQVYL--------MVIWVCILCRKKQELLSKTGQWINKG 85 (122)
Q Consensus 55 C~~C~--------k~~W~C~vC~k~~eL~~kSGeWFye~ 85 (122)
|..|. ..+|.|.-|.+. +..|+|-++.
T Consensus 63 CPfCGk~~vKR~avGIW~C~~Cgk~----fAGGAy~~~T 97 (116)
T 3cc2_Z 63 CPNCGEDRVDRQGTGIWQCSYCDYK----FTGGSYKPET 97 (116)
T ss_dssp CSSSCCEEEEEEETTEEEETTTCCE----EECCSSSSSC
T ss_pred CCCCCCceeEecCceeEECCCCCCE----EECCCccccc
Confidence 98888 359999999985 3477887764
No 37
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=29.88 E-value=8.6 Score=34.47 Aligned_cols=20 Identities=25% Similarity=0.750 Sum_probs=16.4
Q ss_pred hhccc-----------ccccccchhhhhhhH
Q psy6193 55 CQVYL-----------MVIWVCILCRKKQEL 74 (122)
Q Consensus 55 C~~C~-----------k~~W~C~vC~k~~eL 74 (122)
|.+|+ ...|.|++|....++
T Consensus 88 C~rCrayiNPf~~f~~~~~w~Cn~C~~~N~~ 118 (751)
T 3eh1_A 88 CRSCRTYINPFVSFIDQRRWKCNLCYRVNDV 118 (751)
T ss_dssp CTTTCCBCCTTCEESSSSEEECTTTCCEEEC
T ss_pred ccCccCEeCCceEEecCCEEEcccccCCCCC
Confidence 88998 358999999887754
No 38
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=29.44 E-value=1.2e+02 Score=22.03 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=17.1
Q ss_pred hhccc-----------ccccccchhhhhhhHhh
Q psy6193 55 CQVYL-----------MVIWVCILCRKKQELLS 76 (122)
Q Consensus 55 C~~C~-----------k~~W~C~vC~k~~eL~~ 76 (122)
|..|. -..-.|.-|+...+.+-
T Consensus 114 C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E~~~ 146 (151)
T 1tjl_A 114 CESCGVEIGIRRLEARPTADLCIDCKTLAEIRE 146 (151)
T ss_dssp CSSSSCBCCHHHHHHCTTCCSCHHHHHHHHHHH
T ss_pred eCCCCCcchHHHHhcCCCcchhHHHHHHHHHHH
Confidence 99998 24778999998877553
No 39
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=29.04 E-value=67 Score=19.04 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=18.1
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHhH
Q psy6193 18 IIPDLS-HLTLEERQIIESVMMRQ 40 (122)
Q Consensus 18 e~pdLS-~LTeeEreiIl~VL~Rd 40 (122)
.||.+. .||++|...|...|...
T Consensus 59 ~Mp~~~~~ls~~ei~~l~~yl~~~ 82 (88)
T 3dmi_A 59 AMPAFGGRLSDEEIANVAAYVLAS 82 (88)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHH
Confidence 466555 69999999999988654
No 40
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=28.85 E-value=59 Score=20.50 Aligned_cols=22 Identities=14% Similarity=-0.079 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q psy6193 27 LEERQIIESVMMRQKQEEEREL 48 (122)
Q Consensus 27 eeEreiIl~VL~Rdk~le~~E~ 48 (122)
..=++.|..||+|.++++..+.
T Consensus 18 ~iM~~ni~kvlERGekL~~L~d 39 (63)
T 1urq_A 18 GELARARLALDERGQKLSDLEE 39 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999988864
No 41
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=28.63 E-value=69 Score=19.11 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=18.5
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHhHH
Q psy6193 18 IIPDLS-HLTLEERQIIESVMMRQK 41 (122)
Q Consensus 18 e~pdLS-~LTeeEreiIl~VL~Rdk 41 (122)
.||.+. .||++|+..|...|....
T Consensus 60 ~Mp~~~~~ls~~ei~~l~~yl~~~~ 84 (89)
T 1c6r_A 60 AMPAWSGTLDDDEIAAVAAYVYDQA 84 (89)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHc
Confidence 356553 699999999999887654
No 42
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=28.33 E-value=69 Score=19.20 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=18.7
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHhHH
Q psy6193 18 IIPDLS-HLTLEERQIIESVMMRQK 41 (122)
Q Consensus 18 e~pdLS-~LTeeEreiIl~VL~Rdk 41 (122)
.||.+. .||++|+..|...|....
T Consensus 59 ~Mp~~~~~ls~~ei~~l~~yl~~~~ 83 (90)
T 1cyi_A 59 AMPAWADRLSEEEIQAVAEYVFKQA 83 (90)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCHHHHHHHHHHHHhcc
Confidence 466554 699999999999887654
No 43
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.02 E-value=6.9 Score=28.51 Aligned_cols=20 Identities=25% Similarity=0.637 Sum_probs=14.4
Q ss_pred hhccc--c--------cccccchhhh-hhhH
Q psy6193 55 CQVYL--M--------VIWVCILCRK-KQEL 74 (122)
Q Consensus 55 C~~C~--k--------~~W~C~vC~k-~~eL 74 (122)
|++|. . .+.+|.-|.. .+.|
T Consensus 32 CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 62 (141)
T 2crr_A 32 CADCEAKGPRWASWNIGVFICIRCAGIHRNL 62 (141)
T ss_dssp CSSSCCSSCCSEETTTTEECCHHHHHHHHHH
T ss_pred CCCCCCCCCCeEEeccCeEEhhhhhHhHhcC
Confidence 99999 2 3567888877 5554
No 44
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=28.00 E-value=53 Score=19.16 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=16.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHh
Q psy6193 19 IPDLSHLTLEERQIIESVMMR 39 (122)
Q Consensus 19 ~pdLS~LTeeEreiIl~VL~R 39 (122)
||. ..||++|.+.|...|..
T Consensus 50 Mp~-~~ls~~ei~~l~~yl~~ 69 (71)
T 1c75_A 50 MPG-GIAKGAEAEAVAAWLAE 69 (71)
T ss_dssp BCS-CSSCHHHHHHHHHHHHT
T ss_pred CCC-CCCCHHHHHHHHHHHHh
Confidence 565 78999999999887753
No 45
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=27.03 E-value=28 Score=23.15 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=10.8
Q ss_pred CCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy6193 21 DLSHLTLEERQIIESVMMRQKQEEERELEIMRSA 54 (122)
Q Consensus 21 dLS~LTeeEreiIl~VL~Rdk~le~~E~eRirrL 54 (122)
||+.|++.+++.+..+|+ ..+++..- +.+.++
T Consensus 2 ~m~~l~~~~~~el~~~~~-e~q~k~~~-~l~~~l 33 (89)
T 3dxr_A 2 SMDALNSKEQQEFQKVVE-QKQMKDFM-RLYSNL 33 (89)
T ss_dssp ------------CCHHHH-HHHHHHHH-HHHHHH
T ss_pred chhcCCHHHHHHHHHHHH-HHHHHHHH-HHHHHH
Confidence 688999999999999986 33333332 245555
No 46
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=26.34 E-value=36 Score=27.68 Aligned_cols=20 Identities=15% Similarity=0.587 Sum_probs=14.3
Q ss_pred hhccc--c--------cccccchhhh-hhhH
Q psy6193 55 CQVYL--M--------VIWVCILCRK-KQEL 74 (122)
Q Consensus 55 C~~C~--k--------~~W~C~vC~k-~~eL 74 (122)
|++|. . ++.+|.-|.. .+.|
T Consensus 37 C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l 67 (386)
T 3lju_X 37 CADCGAPDPDWASYTLGVFICLSCSGIHRNI 67 (386)
T ss_dssp CTTTCCBSCCEEETTTTEEECHHHHHHHHTC
T ss_pred CccCCCCCCCeEEecccEEEhhhhchHhhCC
Confidence 99999 2 4678888876 4444
No 47
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=26.18 E-value=59 Score=19.61 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=16.9
Q ss_pred CCCC--CCCCHHHHHHHHHHHHh
Q psy6193 19 IPDL--SHLTLEERQIIESVMMR 39 (122)
Q Consensus 19 ~pdL--S~LTeeEreiIl~VL~R 39 (122)
||.+ ..||++|+..|...|..
T Consensus 50 Mp~~~~~~ls~~ei~~l~~yl~~ 72 (80)
T 1wve_C 50 MPAFPASYVDDESLTQVAEYLSS 72 (80)
T ss_dssp BCCCCTTTSCHHHHHHHHHHHHH
T ss_pred CCCCcccCCCHHHHHHHHHHHHH
Confidence 5655 58999999999988764
No 48
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=25.17 E-value=78 Score=18.89 Aligned_cols=21 Identities=10% Similarity=0.237 Sum_probs=16.8
Q ss_pred CCCCC--CCCHHHHHHHHHHHHh
Q psy6193 19 IPDLS--HLTLEERQIIESVMMR 39 (122)
Q Consensus 19 ~pdLS--~LTeeEreiIl~VL~R 39 (122)
||-+. .||++|.+.|...|..
T Consensus 60 Mp~~~~~~ls~~ei~~l~~yi~~ 82 (85)
T 3cu4_A 60 MPAFGEAMIPPADALKIGEYVVA 82 (85)
T ss_dssp SCCCCTTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH
Confidence 66565 6999999999988754
No 49
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=24.89 E-value=16 Score=26.35 Aligned_cols=20 Identities=25% Similarity=0.657 Sum_probs=14.4
Q ss_pred hhccc--c--------cccccchhhh-hhhH
Q psy6193 55 CQVYL--M--------VIWVCILCRK-KQEL 74 (122)
Q Consensus 55 C~~C~--k--------~~W~C~vC~k-~~eL 74 (122)
|++|. . ++.+|.-|.. .+.|
T Consensus 30 CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~l 60 (134)
T 2iqj_A 30 CADCQSKGPRWASWNIGVFICIRCAGIHRNL 60 (134)
T ss_dssp CTTTCCBSCCEEETTTTEEECHHHHHHHHHH
T ss_pred CCcCcCCCCCeEEecCCEEEhHhhhHHHhcC
Confidence 99999 2 3567888877 4544
No 50
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=24.17 E-value=26 Score=23.14 Aligned_cols=28 Identities=32% Similarity=0.644 Sum_probs=21.4
Q ss_pred hhhcccc--------cccccchhhhhhhHhhhcccccccC
Q psy6193 54 ACQVYLM--------VIWVCILCRKKQELLSKTGQWINKG 85 (122)
Q Consensus 54 LC~~C~k--------~~W~C~vC~k~~eL~~kSGeWFye~ 85 (122)
.|.-|.+ .+|.|.-|.+. +..|+|-++.
T Consensus 29 ~C~fCgk~~vkR~a~GIW~C~~C~~~----~AGGAy~~~T 64 (73)
T 1ffk_W 29 KCPVCGFPKLKRASTSIWVCGHCGYK----IAGGAYTPET 64 (73)
T ss_pred cCCCCCCceeEEEEeEEEECCCCCcE----EECCCccccc
Confidence 3888883 59999999875 3477887764
No 51
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=23.99 E-value=56 Score=22.03 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHHHh
Q psy6193 22 LSHLTLEERQIIESVMMR 39 (122)
Q Consensus 22 LS~LTeeEreiIl~VL~R 39 (122)
|+.|+++|++.+..+|.+
T Consensus 119 l~~l~~ee~~~l~~~L~~ 136 (147)
T 4b8x_A 119 LGAYDAEECGEIFAMLRP 136 (147)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH
Confidence 688999999999999876
No 52
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=23.94 E-value=23 Score=27.57 Aligned_cols=16 Identities=31% Similarity=0.825 Sum_probs=11.6
Q ss_pred hhccc--c--------cccccchhhh
Q psy6193 55 CQVYL--M--------VIWVCILCRK 70 (122)
Q Consensus 55 C~~C~--k--------~~W~C~vC~k 70 (122)
|++|. . .+.+|.-|..
T Consensus 40 c~dc~~~~~~~~~~~~~~~~c~~c~~ 65 (329)
T 3o47_A 40 CFECGAFNPQWVSVTYGIWICLECSG 65 (329)
T ss_dssp CTTTCCBSCCEEEGGGTEEECHHHHH
T ss_pred CCCCCCCCCCeEEecCCEEEChhhhh
Confidence 99999 2 3557777765
No 53
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=23.86 E-value=1.1e+02 Score=19.86 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=19.7
Q ss_pred CCCCCCHHHHHHHHHHHHhHHHHHH
Q psy6193 21 DLSHLTLEERQIIESVMMRQKQEEE 45 (122)
Q Consensus 21 dLS~LTeeEreiIl~VL~Rdk~le~ 45 (122)
.+..|++++++.|+.++..-.+.++
T Consensus 90 ~~~~l~~~~~~~i~~~i~~l~~~~~ 114 (126)
T 3ivp_A 90 KIDNFTDADLVIMESVADGIVKSKE 114 (126)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999877655443
No 54
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=23.63 E-value=29 Score=23.19 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=21.3
Q ss_pred hhhccc--------ccccccchhhhhhhHhhhcccccccC
Q psy6193 54 ACQVYL--------MVIWVCILCRKKQELLSKTGQWINKG 85 (122)
Q Consensus 54 LC~~C~--------k~~W~C~vC~k~~eL~~kSGeWFye~ 85 (122)
-|..|. ..+|.|.-|.... ..|+|-++.
T Consensus 29 ~Cp~CG~~~v~r~atGiW~C~~Cg~~~----aggay~~~t 64 (83)
T 1vq8_Z 29 ACPNCGEDRVDRQGTGIWQCSYCDYKF----TGGSYKPET 64 (83)
T ss_dssp ECSSSCCEEEEEEETTEEEETTTCCEE----ECCSSSSSC
T ss_pred cCCCCCCcceeccCCCeEECCCCCCEe----cCCEecccc
Confidence 399998 3589999999853 467787753
No 55
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=23.47 E-value=58 Score=22.20 Aligned_cols=19 Identities=11% Similarity=0.314 Sum_probs=16.6
Q ss_pred CCCCCHHHHHHHHHHHHhH
Q psy6193 22 LSHLTLEERQIIESVMMRQ 40 (122)
Q Consensus 22 LS~LTeeEreiIl~VL~Rd 40 (122)
++.|+++|++.+..+|.+=
T Consensus 115 ~~~l~~ee~~~l~~~L~kl 133 (151)
T 4aik_A 115 LGGISSDEIAVLSGLIDKL 133 (151)
T ss_dssp TTTSCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHH
Confidence 6789999999999998764
No 56
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=23.34 E-value=59 Score=19.50 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=15.9
Q ss_pred CCCC-CCCCHHHHHHHHHHHHh
Q psy6193 19 IPDL-SHLTLEERQIIESVMMR 39 (122)
Q Consensus 19 ~pdL-S~LTeeEreiIl~VL~R 39 (122)
||-+ ..||++|.+.|...|..
T Consensus 55 Mp~~~~~Lsd~ei~~l~~yi~~ 76 (78)
T 1gks_A 55 MPAYDGRADREDLVKAIEYMLS 76 (78)
T ss_dssp BCCCBTTBCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHh
Confidence 5555 47999999999887753
No 57
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=22.96 E-value=74 Score=19.30 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHHHHH
Q psy6193 20 PDLSHLTLEERQIIESVM 37 (122)
Q Consensus 20 pdLS~LTeeEreiIl~VL 37 (122)
..+|.||++|-+-+-.+.
T Consensus 3 ~s~tGLT~~EA~EfH~~~ 20 (45)
T 1lgh_B 3 RSLSGLTEEEAIAVHDQF 20 (45)
T ss_dssp CCSSSCCHHHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHH
Confidence 568999999988766543
No 58
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=22.87 E-value=91 Score=19.02 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.6
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q psy6193 30 RQIIESVMMRQKQEEEREL 48 (122)
Q Consensus 30 reiIl~VL~Rdk~le~~E~ 48 (122)
.+-|-.||+|.++++...+
T Consensus 21 ~~NI~~vl~RGekLd~L~~ 39 (63)
T 1n7s_A 21 RVNVDKVLERDQKLSELDD 39 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHH
Confidence 5668899999999988764
No 59
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
Probab=22.58 E-value=48 Score=26.74 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhHHHHHHH
Q psy6193 14 TNADIIPDLSHLTLEERQIIESVMMRQKQEEER 46 (122)
Q Consensus 14 ~~~~e~pdLS~LTeeEreiIl~VL~Rdk~le~~ 46 (122)
+...+..|...||+.||..|..||.--..++..
T Consensus 63 ~ls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~i 95 (345)
T 1jk0_B 63 ELAKDTEDFQKLTDDQKTYIGNLLALSISSDNL 95 (345)
T ss_dssp CCTTTSTTTTTSCTTHHHHHHHHHHHHC-----
T ss_pred ChhhhHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 444678899999999999999999876555544
No 60
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=22.49 E-value=88 Score=19.79 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=17.3
Q ss_pred CCCCCC--CCCHHHHHHHHHHHHh
Q psy6193 18 IIPDLS--HLTLEERQIIESVMMR 39 (122)
Q Consensus 18 e~pdLS--~LTeeEreiIl~VL~R 39 (122)
.||.+. .||++|.+.|...|..
T Consensus 73 ~MP~~~~~~Lsd~ei~~l~~Yi~~ 96 (99)
T 3dp5_A 73 GMPAFGEAMIPPADALKIGEYVVA 96 (99)
T ss_dssp TSCCCCTTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH
Confidence 467666 5999999999987753
No 61
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.31 E-value=84 Score=21.10 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q psy6193 28 EERQIIESVMMRQKQEEEREL 48 (122)
Q Consensus 28 eEreiIl~VL~Rdk~le~~E~ 48 (122)
-=++-|..||+|.++++..++
T Consensus 45 IM~~NI~kvLeRGEkLd~L~d 65 (96)
T 1sfc_A 45 IMRVNVDKVLERDQKLSELDD 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHH
Confidence 345567899999999988864
No 62
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=22.27 E-value=89 Score=20.11 Aligned_cols=25 Identities=16% Similarity=0.120 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHH
Q psy6193 24 HLTLEERQIIESVMMRQKQEEEREL 48 (122)
Q Consensus 24 ~LTeeEreiIl~VL~Rdk~le~~E~ 48 (122)
..+.-=++-|..||+|.++++..++
T Consensus 26 ev~~iM~~NI~~vLeRGekLd~L~~ 50 (80)
T 1l4a_A 26 EVVDIMRVNVDKVLERDSKISELDD 50 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3334445668899999999998875
No 63
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=21.83 E-value=43 Score=20.19 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=17.2
Q ss_pred CCCCCC--CCCHHHHHHHHHHHHhH
Q psy6193 18 IIPDLS--HLTLEERQIIESVMMRQ 40 (122)
Q Consensus 18 e~pdLS--~LTeeEreiIl~VL~Rd 40 (122)
.||.+. .||++|+..|...|...
T Consensus 61 ~Mp~~~~~~ls~~ei~~l~~yl~~~ 85 (87)
T 2zon_G 61 AMPPRGGTAADEATLRAAVAYMMDA 85 (87)
T ss_dssp TBCGGGGCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 355554 69999999999887653
No 64
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=21.37 E-value=54 Score=21.62 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=19.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhHHH
Q psy6193 18 IIPDLSHLTLEERQIIESVMMRQKQ 42 (122)
Q Consensus 18 e~pdLS~LTeeEreiIl~VL~Rdk~ 42 (122)
...+++.||++|++.+..++...++
T Consensus 51 H~~~l~dL~~~e~~~l~~l~~~~~~ 75 (117)
T 3oj7_A 51 HIASLNEITEENEAFIGKVLYKVSL 75 (117)
T ss_dssp CCCSGGGCCTTTHHHHHHHHHHHHH
T ss_pred HhCCHHHCCHHHHHHHHHHHHHHHH
Confidence 4788999999999888887765443
No 65
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=21.06 E-value=1e+02 Score=20.50 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=17.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHh
Q psy6193 18 IIPDLSHLTLEERQIIESVMMR 39 (122)
Q Consensus 18 e~pdLS~LTeeEreiIl~VL~R 39 (122)
.||.+. ||++|.+.|...|.-
T Consensus 111 ~Mp~~~-Ls~~ei~~l~ayl~~ 131 (146)
T 3o0r_C 111 AMPQFH-LSEGQVDDLAEFLKW 131 (146)
T ss_dssp CCCCCC-CCHHHHHHHHHHHHH
T ss_pred CCCCCC-cCHHHHHHHHHHHHH
Confidence 477776 999999999998753
No 66
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=20.83 E-value=9.8 Score=23.43 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=24.2
Q ss_pred hhhccc----ccccccchhhhhhhHhhhccccccc
Q psy6193 54 ACQVYL----MVIWVCILCRKKQELLSKTGQWINK 84 (122)
Q Consensus 54 LC~~C~----k~~W~C~vC~k~~eL~~kSGeWFye 84 (122)
.|..|. ...-.|..|.....+....|.||+.
T Consensus 11 ~C~~C~GsG~~~~~~C~~C~G~G~v~~~qG~~~~g 45 (53)
T 2bx9_A 11 ACPKCERAGEIEGTPCPACSGKGVILTAQGYTLLD 45 (53)
T ss_dssp ECTTTTTSSEETTEECTTTTTSSEEECHHHHHHHH
T ss_pred cCCCCcceeccCCCCCccCCCCccEEEEecccHHH
Confidence 388888 2345799999998888888888875
Done!