RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6193
         (122 letters)



>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
          RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
          SCOP: g.50.1.1
          Length = 134

 Score = 48.0 bits (113), Expect = 3e-08
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 8/68 (11%)

Query: 20 PDLSHLTLEERQIIESVMMRQKQEEERELEIMRSACQVYLMVIW--------VCILCRKK 71
               LT EE++II  V+ R ++ E  E E +         +           CILC ++
Sbjct: 5  RKQEELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQ 64

Query: 72 QELLSKTG 79
            +L    
Sbjct: 65 LGMLGSAS 72


>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein,
          RAB, RAB27B, effector, SLP homology domain,
          acetylation, lipoprotein, membrane; HET: GTP; 3.00A
          {Mus musculus}
          Length = 153

 Score = 37.7 bits (86), Expect = 3e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 20 PDLSHLTLEERQIIESVMMRQKQEEERELEIMR 52
           DLS LT EE + + +V+ R      RE E ++
Sbjct: 12 LDLSTLTDEEAEHVWAVVQRDFDLRRREEERLQ 44


>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger
          domain, metal binding protein; NMR {Rattus norvegicus}
          PDB: 2cjs_C
          Length = 62

 Score = 29.7 bits (66), Expect = 0.045
 Identities = 10/13 (76%), Positives = 12/13 (92%)

Query: 61 VIWVCILCRKKQE 73
          V+WVC LCRK+QE
Sbjct: 50 VMWVCNLCRKQQE 62


>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain,
           heterodimer, pyrophosphate, G protein; HET: GDP AGS;
           2.70A {Pseudomonas syringae} SCOP: c.26.2.2
          Length = 325

 Score = 25.5 bits (55), Expect = 6.3
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 6/44 (13%)

Query: 6   GMVTSMAQTNADIIPDLSHLTLEERQ------IIESVMMRQKQE 43
           G V S A +  DII ++      ERQ           M  +K++
Sbjct: 279 GAVESEATSLTDIIQEMLLTRTSERQGRVIDHDGAGSMEEKKRQ 322


>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
           for structural genomics of infectious DISE; HET: SO4;
           2.89A {Bacillus anthracis}
          Length = 427

 Score = 24.9 bits (55), Expect = 8.0
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 10/39 (25%)

Query: 19  IPDLSHLTLEERQIIESVMMRQKQEEERELEIMRSACQV 57
           I ++     E R          K +EE  +EI++ A  V
Sbjct: 158 IGNVYPNICELRVF--------KTDEE--IEIIKEAIAV 186


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0718    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,744,569
Number of extensions: 89265
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 17
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)