RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6193
         (122 letters)



>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 124

 Score = 38.9 bits (90), Expect = 2e-05
 Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 51/113 (45%)

Query: 25  LTLEERQIIESVMMRQKQEEERELEIMRSACQVYLM------------------------ 60
           LT EE++II  V+ R ++ E  E E +                                 
Sbjct: 3   LTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLG 62

Query: 61  ---------------------------VIWVCILCRKKQELLSKTGQWINKGM 86
                                       +W+C +C +++E+  ++G W  KG 
Sbjct: 63  SASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREVWKRSGAWFFKGF 115


>d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea
           virus [TaxId: 11099]}
          Length = 588

 Score = 25.6 bits (56), Expect = 1.7
 Identities = 4/37 (10%), Positives = 12/37 (32%)

Query: 62  IWVCILCRKKQELLSKTGQWINKGMNSTPQGDAIMRK 98
           I      ++  + +      + +    T  G+  +R 
Sbjct: 273 IQKYYYKKEWHKFIDTITDHMTEVPVITADGEVYIRN 309


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 424,302
Number of extensions: 17227
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 11
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)