BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6196
(146 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48612|PELO_DROME Protein pelota OS=Drosophila melanogaster GN=pelo PE=2 SV=2
Length = 395
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 71/89 (79%), Positives = 84/89 (94%)
Query: 47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
GRNI+ENQYVKMGAYHTLDLELNRKFEL KPEWD+IALERIE+AC+ ++ADVAAV+MQE
Sbjct: 85 GRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQE 144
Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
GLA++ LITASM+LVR+KIE +IPRKR+G
Sbjct: 145 GLAHVCLITASMTLVRSKIEVSIPRKRKG 173
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 1 MGAYHTLDLELNRKFELSKPEWDSLYTARI 30
MGAYHTLDLELNRKFEL KPEWD++ RI
Sbjct: 96 MGAYHTLDLELNRKFELRKPEWDTIALERI 125
>sp|Q5U567|PELO_XENLA Protein pelota homolog OS=Xenopus laevis GN=pelo PE=2 SV=1
Length = 383
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/89 (73%), Positives = 77/89 (86%)
Query: 47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
G NIQENQYVKMGAYHT++LE NRKF L+K +WDSI LERIE AC+ +ADVAAV+MQE
Sbjct: 85 GINIQENQYVKMGAYHTIELEPNRKFTLAKKQWDSIVLERIEQACDPAFSADVAAVVMQE 144
Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
GLA+I L+T SM+L+R KIET+IPRKRRG
Sbjct: 145 GLAHICLVTPSMTLLRAKIETSIPRKRRG 173
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 1 MGAYHTLDLELNRKFELSKPEWDSLYTARI 30
MGAYHT++LE NRKF L+K +WDS+ RI
Sbjct: 96 MGAYHTIELEPNRKFTLAKKQWDSIVLERI 125
>sp|Q7ZWC4|PELO_DANRE Protein pelota homolog OS=Danio rerio GN=pelo PE=2 SV=1
Length = 385
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 76/89 (85%)
Query: 47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
G NIQENQYVKMGAYHT++LELNRKF L+K WDS+ L+RIE AC+ + ADVAAV+MQE
Sbjct: 85 GTNIQENQYVKMGAYHTIELELNRKFTLAKKVWDSVVLDRIEQACDPAQKADVAAVVMQE 144
Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
GLAN++L+T +M+L+R K+E IPRKR+G
Sbjct: 145 GLANLVLVTPAMTLLRAKVEVTIPRKRKG 173
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 1 MGAYHTLDLELNRKFELSKPEWDSLYTARI 30
MGAYHT++LELNRKF L+K WDS+ RI
Sbjct: 96 MGAYHTIELELNRKFTLAKKVWDSVVLDRI 125
>sp|Q5RCE3|PELO_PONAB Protein pelota homolog OS=Pongo abelii GN=PELO PE=2 SV=1
Length = 385
Score = 132 bits (332), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 75/89 (84%)
Query: 47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+ +ADVAAV+MQE
Sbjct: 85 GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAVVMQE 144
Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
GLA+I L+T SM+L R K+E NIPRKR+G
Sbjct: 145 GLAHICLVTPSMTLTRAKVEVNIPRKRKG 173
>sp|Q9BRX2|PELO_HUMAN Protein pelota homolog OS=Homo sapiens GN=PELO PE=1 SV=2
Length = 385
Score = 132 bits (332), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 75/89 (84%)
Query: 47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+ +ADVAAV+MQE
Sbjct: 85 GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAVVMQE 144
Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
GLA+I L+T SM+L R K+E NIPRKR+G
Sbjct: 145 GLAHICLVTPSMTLTRAKVEVNIPRKRKG 173
>sp|Q58DV0|PELO_BOVIN Protein pelota homolog OS=Bos taurus GN=PELO PE=2 SV=2
Length = 385
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 75/89 (84%)
Query: 47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+ +ADVAAV+MQE
Sbjct: 85 GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAVVMQE 144
Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
GLA+I L+T SM+L R K+E NIPRKR+G
Sbjct: 145 GLAHICLVTPSMTLTRAKVEVNIPRKRKG 173
>sp|Q5XIP1|PELO_RAT Protein pelota homolog OS=Rattus norvegicus GN=Pelo PE=2 SV=1
Length = 385
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 75/89 (84%)
Query: 47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+ +ADVAAV+MQE
Sbjct: 85 GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAVVMQE 144
Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
GLA++ L+T SM+L R K+E NIPRKR+G
Sbjct: 145 GLAHVCLVTPSMTLTRAKVEVNIPRKRKG 173
>sp|Q80X73|PELO_MOUSE Protein pelota homolog OS=Mus musculus GN=Pelo PE=2 SV=3
Length = 385
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 75/89 (84%)
Query: 47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+ +ADVAAV+MQE
Sbjct: 85 GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAVVMQE 144
Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
GLA++ L+T SM+L R K+E NIPRKR+G
Sbjct: 145 GLAHVCLVTPSMTLTRAKVEVNIPRKRKG 173
>sp|Q5ZK01|PELO_CHICK Protein pelota homolog OS=Gallus gallus GN=PELO PE=2 SV=1
Length = 385
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 74/89 (83%)
Query: 47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+ ADVAAV+MQE
Sbjct: 85 GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWNADVAAVVMQE 144
Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
GLA++ L+T SM+L R K+E NIPRKR+G
Sbjct: 145 GLAHVCLVTPSMTLTRAKVEVNIPRKRKG 173
>sp|P50444|YNU6_CAEEL Uncharacterized protein R74.6 OS=Caenorhabditis elegans GN=R74.6
PE=3 SV=1
Length = 381
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 74/101 (73%)
Query: 36 FTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEK 95
F P + GRNI+EN VK+GAYHT+DLE NRKF L K EWDSI LER+ +A + +
Sbjct: 74 FDPGAQELHLKGRNIEENDIVKLGAYHTIDLEPNRKFTLQKTEWDSIDLERLNLALDPAQ 133
Query: 96 TADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGY 136
ADVAAV++ EGLAN+ LIT +M+L R KI+ IPRKR+G+
Sbjct: 134 AADVAAVVLHEGLANVCLITPAMTLTRAKIDMTIPRKRKGF 174
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 1 MGAYHTLDLELNRKFELSKPEWDSLYTARIGL 32
+GAYHT+DLE NRKF L K EWDS+ R+ L
Sbjct: 96 LGAYHTIDLEPNRKFTLQKTEWDSIDLERLNL 127
>sp|Q9USL5|DOM34_SCHPO Protein dom34 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=dom34 PE=1 SV=1
Length = 390
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 69/100 (69%)
Query: 36 FTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEK 95
F + GR + + VKMG+YHTLDLEL+R F L K EWD+ AL+R++ ACN +
Sbjct: 74 FDTKAAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSR 133
Query: 96 TADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRG 135
A++ AV++ EGLANI LIT M+++R +I+ IPRKRRG
Sbjct: 134 NAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRG 173
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 1 MGAYHTLDLELNRKFELSKPEWDSLYTARI 30
MG+YHTLDLEL+R F L K EWD+ R+
Sbjct: 96 MGSYHTLDLELHRNFTLYKNEWDAFALDRV 125
>sp|P33309|DOM34_YEAST Protein DOM34 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=DOM34 PE=1 SV=2
Length = 386
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 53/82 (64%)
Query: 53 NQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIM 112
N + +G Y + L+ F + K ++ + + ACNIE +D AAV++QEG+A++
Sbjct: 96 NVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACNIEYKSDTAAVVLQEGIAHVC 155
Query: 113 LITASMSLVRTKIETNIPRKRR 134
L+T+S ++++ KIE ++P+K+R
Sbjct: 156 LVTSSSTILKQKIEYSMPKKKR 177
>sp|O27679|PELO_METTH Protein pelota homolog OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=pelA PE=3 SV=2
Length = 353
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 31 GLKSPF-----TPAVGYYYYCGR----NIQE---NQYVKMGAYHTLDLELNRKFELSKPE 78
G+K F V ++ Y GR + E V MG++HTL+++LN + K
Sbjct: 57 GVKKTFYLGIRVETVSFHIYTGRLRATGVIERGPEDLVPMGSHHTLEVKLNTPLRIQKEH 116
Query: 79 WDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKR 133
W L+R+ +A K ++M++ +A + LI R I +IP KR
Sbjct: 117 WSRWTLKRLRMAVRASKNLKAIILVMEDDVAELGLIRQYGVEYRGPITGHIPGKR 171
>sp|C5A5T8|PELO_THEGJ Protein pelota homolog OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=pelA PE=3 SV=1
Length = 357
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 56 VKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLIT 115
V +G YHT+ +E + KP W +ER++ A K A V V++ EG A+I L+
Sbjct: 93 VPLGKYHTITIEEGTVVTIQKPRWKEHHIERLKEAIEASKRAKVMIVVIDEGEADIALVR 152
Query: 116 ASMSLVRTKIETNIPRKR 133
+ I N+ KR
Sbjct: 153 EYGVEMVASIRRNLGGKR 170
>sp|B6YUV3|PELO_THEON Protein pelota homolog OS=Thermococcus onnurineus (strain NA1)
GN=pelA PE=3 SV=1
Length = 357
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 56 VKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLIT 115
V +G YHT+ +E + KP W +ER+ A + K A V V++ +G A++ L+
Sbjct: 93 VPLGKYHTIAIEEGTVVTIQKPRWKEHHIERLREAVSASKRARVMIVVIDDGEADMALVR 152
Query: 116 ASMSLVRTKIETNIPRKR 133
+ T I N+ KR
Sbjct: 153 EYGVEILTSIRHNLGGKR 170
>sp|Q5JIB9|PELO_PYRKO Protein pelota homolog OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=pelA PE=3 SV=1
Length = 357
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 56 VKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLIT 115
V +G YHT+ +E + KP W +ER++ A K A V V++ +G A++ L+
Sbjct: 93 VPLGKYHTIAIEQGTVVTIQKPRWKEHHIERLKEAVAASKRARVMIVVIDDGEADMALVR 152
Query: 116 ASMSLVRTKIETNIPRKR 133
+ I N+ KR
Sbjct: 153 EYGVEILNSIRHNLGGKR 170
>sp|Q9V0V3|PELO_PYRAB Protein pelota homolog OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=pelA PE=3 SV=1
Length = 356
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%)
Query: 56 VKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLIT 115
V +G YHT+ +E + K W S +ERI+ A K A V V M++G A + ++
Sbjct: 93 VPLGKYHTIAVEPGMTITIQKERWRSHHVERIKEAVEASKRAKVMIVAMEDGEAEVAIVR 152
Query: 116 ASMSLVRTKIETNIPRKR 133
I NI KR
Sbjct: 153 EYGLDFIASIRHNIGGKR 170
>sp|Q46C69|PELO_METBF Protein pelota homolog OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=pelA PE=3 SV=1
Length = 350
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 58 MGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLI 114
+G+YHTL++E+ + K W + L+RI+ A K V V ++EG A+I +
Sbjct: 93 VGSYHTLNIEIGTNLSVIKEHWKNDQLQRIKDAEEASKRPKVVMVAIEEGDADIGFV 149
>sp|Q8TSZ1|PELO_METAC Protein pelota homolog OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=pelA PE=3 SV=1
Length = 350
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 58 MGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLI 114
+G+YHTL++E+ + K W + L+RI+ A K V V ++EG A+I +
Sbjct: 93 VGSYHTLNVEIGTNISIIKERWKNDQLQRIQDAEEAGKRPKVVIVAVEEGDADIGFV 149
>sp|Q8PVZ0|PELO_METMA Protein pelota homolog OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=pelA
PE=3 SV=1
Length = 350
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 59 GAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLI 114
G+YHTL++E+ + K W + L+RI+ A K V V ++EG A+I +
Sbjct: 94 GSYHTLNVEIGTNISIIKEHWKNDQLQRIQDAEEAGKRPKVVIVAVEEGDADIGFV 149
>sp|Q8U150|PELO_PYRFU Protein pelota homolog OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=pelA PE=3 SV=1
Length = 356
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 56 VKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLI 114
V +G YHTL +E + K +W + +ER++ A K A V V +++G A I ++
Sbjct: 93 VPLGRYHTLTVEPGTVITIQKEKWKNYHIERLKEAIESSKKARVMIVAIEDGEAEIAIV 151
>sp|Q0W6H4|PELO_UNCMA Protein pelota homolog OS=Uncultured methanogenic archaeon RC-I
GN=pelA PE=3 SV=1
Length = 357
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 59 GAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANI 111
GAYHTL++E + ++K W S +ERI A K +V V ++EG A I
Sbjct: 94 GAYHTLNIEPYSELSIAK-HWKSDQIERIRDAVEASKRPEVEIVTIEEGEAAI 145
>sp|Q6M133|PELO_METMP Protein pelota homolog OS=Methanococcus maripaludis (strain S2 /
LL) GN=pelA PE=3 SV=1
Length = 348
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 46 CGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQ 105
G+ I + +G+YHT+D+E + + K W +ER++ A + K V V+M
Sbjct: 82 SGKIIHAPDDIPIGSYHTIDIEPFLQVSVQK-NWKKWDIERLKEAEDSSKKPKVVVVIMD 140
Query: 106 EGLANIMLI 114
+ A+I L+
Sbjct: 141 DSEADIFLV 149
>sp|Q8TZ98|PELO_METKA Protein pelota homolog OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=pelA PE=3 SV=1
Length = 353
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 59 GAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASM 118
G++HT+++ ++ ++ K EW+ LERIE A + AV EG I+ +
Sbjct: 93 GSHHTVNVTTGKRIKIVKDEWERKDLERIEEAEMSRPPVMLVAVDTGEGTIGIVR-DYGL 151
Query: 119 SLVRTKIETNIPRKRRG 135
+V ++ N+P KR G
Sbjct: 152 DVV-ARVRHNVPGKRGG 167
>sp|O59148|PELO_PYRHO Protein pelota homolog OS=Pyrococcus horikoshii (strain ATCC 700860
/ DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pelA
PE=3 SV=1
Length = 356
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 56 VKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLI 114
V +G YHT+ +E L K W +ER++ A K A V V +++G A + ++
Sbjct: 93 VPLGKYHTIAVEPGTIITLQKERWKPYYIERLKEAVEASKRAKVMIVTIEDGEAEMAIV 151
>sp|A6VI74|PELO_METM7 Protein pelota homolog OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=pelA PE=3 SV=1
Length = 348
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 46 CGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQ 105
G+ I + + +G+YHT+D+E + + K W L R++ A + K V V+M
Sbjct: 82 SGKIIHAPEDIPIGSYHTIDIEPLLQVSVQK-NWKKWDLARLKDAEDSSKKPKVVVVIMD 140
Query: 106 EGLANIMLI 114
+ A+I L+
Sbjct: 141 DSEADIFLV 149
>sp|A6UUY1|PELO_META3 Protein pelota homolog OS=Methanococcus aeolicus (strain Nankai-3 /
ATCC BAA-1280) GN=pelA PE=3 SV=1
Length = 348
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 33 KSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACN 92
K F G I + V +G+YHT+D+E + + K W L+R++ A N
Sbjct: 69 KIKFDENTNRLRVSGPIIHGPEDVPIGSYHTIDIEPLKDVSIQK-NWKKWDLQRLKDAEN 127
Query: 93 IEKTADVAAVMMQEGLANIMLI 114
K + V+M + A + +I
Sbjct: 128 SAKKPKIIVVIMDDSDATVFII 149
>sp|Q3INN9|PELO_NATPD Protein pelota homolog OS=Natronomonas pharaonis (strain DSM 2160 /
ATCC 35678) GN=pelA PE=3 SV=1
Length = 355
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 41 GYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVA 100
G C R Q +G +HT ++E + + + K W LER+E A + DVA
Sbjct: 86 GDIVDCSREDQ------LGFHHTFNVEEHDELTVEKV-WQVDQLERLEEAVEAAEQPDVA 138
Query: 101 AVMMQEGLANIMLI 114
++EG A+I +
Sbjct: 139 IATVEEGQAHIHTV 152
>sp|A5UKW7|PELO_METS3 Protein pelota homolog OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=pelA PE=3 SV=1
Length = 353
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 23 DSLYTARIGLKSPFT-----PAVGYYYYCGR-------NIQENQYVKMGAYHTLDLELNR 70
D L + R G+K FT + ++ + G+ + +G++HT++++LN
Sbjct: 50 DKLRSDR-GVKKTFTLRIDVENITFHIFTGKLRLTGVITKGPEDLIPLGSHHTVEVKLNT 108
Query: 71 KFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLI 114
+ K +W + AL+R+ A K V++++ A + L+
Sbjct: 109 PITIKKEKWANWALKRLNQAIEASKKLAAIIVLLEDDTATLGLM 152
>sp|A9A8K6|PELO_METM6 Protein pelota homolog OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=pelA PE=3 SV=1
Length = 348
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 46 CGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQ 105
G+ I + +G+YHT+D+E + + K W L R++ A + K V V+M
Sbjct: 82 SGKIIHAPDDIPIGSYHTIDIEPLLQVSVQK-NWKKWDLARLKDAEDSSKKPKVVVVIMD 140
Query: 106 EGLANIMLI 114
+ A+I L+
Sbjct: 141 DSEADIFLV 149
>sp|A6UR75|PELO_METVS Protein pelota homolog OS=Methanococcus vannielii (strain SB / ATCC
35089 / DSM 1224) GN=pelA PE=3 SV=1
Length = 348
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 33 KSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACN 92
K F V G+ I + + +G+YHTLD+E + + K W L R++ A
Sbjct: 69 KVSFHEEVNRLRVSGKIIHAPEDIPIGSYHTLDIEPFTQISIQK-NWKKWDLTRLKEAEE 127
Query: 93 IEKTADVAAVMMQEGLANIMLI 114
K V V++ + A+I +
Sbjct: 128 SGKRPKVVVVILDDSEADIFTV 149
>sp|P40460|NDC80_YEAST Kinetochore protein NDC80 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TID3 PE=1 SV=1
Length = 691
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 48 RNIQENQYVKMGAYHTLDLEL---NRKFELSKPEWDSIAL-ERIEVACNIEKTADVAAVM 103
+N++ + K L+LEL N KFELSK E + + + +RIE+ +EK + + ++
Sbjct: 551 KNLKHDINEKTQINEKLELELSEANSKFELSKQENERLLVAQRIEIE-KMEKKINDSNLL 609
Query: 104 MQEGLANIMLITASMSLVRTKIETNIPRKRRGYFCATLYIVPI 146
M+ +++ + S L +++ ++ RKR ++++ I
Sbjct: 610 MKTKISDAEELVTSTELKLEELKVDLNRKRYKLHQQVIHVIDI 652
>sp|B8GIR5|PELO_METPE Protein pelota homolog OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=pelA PE=3 SV=1
Length = 340
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 19 KPEWDSLYTARIGLKSPFTPAVGYYYYCGRNIQENQYVK----MGAYHTLDLELNRKFEL 74
+PE RIG++ V ++ Y R ++ ++ +G+YHTL+LE N FE+
Sbjct: 54 RPEKAEKRPVRIGIR---VEKVEFHQYSSR-LRVTGLIESGPDVGSYHTLNLEPN--FEV 107
Query: 75 SKPE-WDSIALERIEVACNIEKTADVAAVMMQEGLANIMLI 114
S W ER++ A N + V + ++EG A + I
Sbjct: 108 SVIRFWSKSDRERVDRAVNSSGSGLVHVLAIEEGEAELFRI 148
>sp|A0B6U3|PELO_METTP Protein pelota homolog OS=Methanosaeta thermophila (strain DSM 6194
/ PT) GN=pelA PE=3 SV=2
Length = 347
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 19 KPEWDSLYTARIGLKSPFTPAVGYYYYCG-RNIQE--NQYVKMGAYHTLDLELNRKFELS 75
+PE T R+G+ AV ++ Y I V +G+YHTL++E + +
Sbjct: 54 RPEKAERRTVRLGIS---VEAVEFHTYSNWLRIHGVIKSGVDIGSYHTLNIEAGSELSII 110
Query: 76 KPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLI 114
K W L+RIE A V +++EG A I ++
Sbjct: 111 K-RWRPDELQRIEEAVAESNRPRVVLALVEEGEATIGVL 148
>sp|Q9HPR5|PELO_HALSA Protein pelota homolog OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=pelA PE=3 SV=1
Length = 357
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 41 GYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVA 100
G C R Q +G +HTL++ + E+ K W L R+ A DVA
Sbjct: 86 GTIEDCSREDQ------LGLHHTLNVAEREELEVEK-HWQPDQLNRLNEAVEATDQPDVA 138
Query: 101 AVMMQEGLANIMLI 114
++EG A+I ++
Sbjct: 139 IATVEEGEAHIHVV 152
>sp|B0R5R9|PELO_HALS3 Protein pelota homolog OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=pelA PE=3 SV=1
Length = 357
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 41 GYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVA 100
G C R Q +G +HTL++ + E+ K W L R+ A DVA
Sbjct: 86 GTIEDCSREDQ------LGLHHTLNVAEREELEVEK-HWQPDQLNRLNEAVEATDQPDVA 138
Query: 101 AVMMQEGLANIMLI 114
++EG A+I ++
Sbjct: 139 IATVEEGEAHIHVV 152
>sp|A4G0A4|PELO_METM5 Protein pelota homolog OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=pelA PE=3 SV=1
Length = 348
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 46 CGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQ 105
G+ I + +G+YHT+D+E + + K W L R++ A + K V V++
Sbjct: 82 SGKIIHAPDDIPIGSYHTIDIEPLLQVSVQK-NWKKWDLVRLKEAEDSSKKPKVVVVILD 140
Query: 106 EGLANIMLI 114
+ A+I L+
Sbjct: 141 DSEADIFLV 149
>sp|Q12W71|PELO_METBU Protein pelota homolog OS=Methanococcoides burtonii (strain DSM
6242) GN=pelA PE=3 SV=1
Length = 347
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 19 KPEWDSLYTARIGLKSPFTPAVGYYYYCGR----NIQENQYVKMGAYHTLDLELNRKFEL 74
+PE T R+G++ V ++ + R + E+ + G YHTL++E +
Sbjct: 55 RPEKAEKKTVRLGVR---VEDVEFHKFSNRLRVHGLIEHG-MDAGFYHTLNIEDGTNLSI 110
Query: 75 SKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLI 114
+K W LER+ A K V V ++EG A+I +
Sbjct: 111 TKY-WKKDQLERVNEAEAASKRPKVILVAIEEGDADIGFV 149
>sp|C6BUG6|KTHY_DESAD Thymidylate kinase OS=Desulfovibrio salexigens (strain ATCC 14822 /
DSM 2638 / NCIB 8403 / VKM B-1763) GN=tmk PE=3 SV=1
Length = 217
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 38 PAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTA 97
P +G RN+QEN+ + G + LE + + W ++ +RI V N ++T
Sbjct: 136 PEIGLKRAMTRNLQENKMQEEGRFEAESLEFHNRVREGYLTWAALNNDRI-VVVNADQTP 194
Query: 98 D 98
D
Sbjct: 195 D 195
>sp|Q2NFD9|PELO_METST Protein pelota homolog OS=Methanosphaera stadtmanae (strain DSM
3091) GN=pelA PE=3 SV=1
Length = 351
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 56 VKMGAYHTLDLELNRKFELSKPEWDSIALERI-----------EVACNIEKTADVAAVMM 104
+ +G++HT++++LN + K W+ +LER+ E+ IE ++
Sbjct: 94 IPLGSHHTINVQLNNSIRIKKI-WNKWSLERLNQAIEASNRANEIIVAIEDNTTELGIIK 152
Query: 105 QEGLANIMLITASMSLVRTKIETNIPRKRRGYF 137
Q G+ I I +S + IE N +K Y+
Sbjct: 153 QYGIDYIGPIIGDIS-GKQNIEKNRAQKVNEYY 184
>sp|A2BL82|PELO_HYPBU Protein pelota homolog OS=Hyperthermus butylicus (strain DSM 5456 /
JCM 9403) GN=pelA PE=3 SV=1
Length = 360
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 53 NQYVKMGAYHTLDLELNRKFELSKPE-WDSIALERIE 88
+Y +G YHTL +E R+ ++ KP W + +E+++
Sbjct: 88 EKYGVVGKYHTLSIEPGRELDIVKPSGWPQVLIEKLK 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,519,458
Number of Sequences: 539616
Number of extensions: 1737215
Number of successful extensions: 3638
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3563
Number of HSP's gapped (non-prelim): 95
length of query: 146
length of database: 191,569,459
effective HSP length: 106
effective length of query: 40
effective length of database: 134,370,163
effective search space: 5374806520
effective search space used: 5374806520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)